Query 001211
Match_columns 1123
No_of_seqs 419 out of 1292
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 18:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0998 Synaptic vesicle prote 100.0 6.7E-47 1.5E-51 460.5 42.9 814 4-1078 8-841 (847)
2 KOG1029 Endocytic adaptor prot 100.0 2.9E-38 6.3E-43 365.5 36.6 99 393-492 182-280 (1118)
3 PF12763 EF-hand_4: Cytoskelet 99.9 4.9E-24 1.1E-28 203.0 7.7 94 399-493 2-97 (104)
4 KOG0998 Synaptic vesicle prote 99.9 2.4E-20 5.2E-25 229.0 32.9 362 395-771 118-601 (847)
5 KOG1029 Endocytic adaptor prot 99.9 2.5E-19 5.4E-24 209.6 32.1 94 395-490 5-98 (1118)
6 KOG1955 Ral-GTPase effector RA 99.8 6.4E-19 1.4E-23 199.3 16.5 101 389-490 214-314 (737)
7 PF12763 EF-hand_4: Cytoskelet 99.7 9.6E-18 2.1E-22 160.1 6.5 83 4-87 7-91 (104)
8 smart00027 EH Eps15 homology d 99.7 2.9E-16 6.2E-21 145.9 11.5 95 397-492 1-95 (96)
9 PF12761 End3: Actin cytoskele 99.6 1.9E-15 4.1E-20 157.5 12.9 173 459-678 1-195 (195)
10 KOG1954 Endocytosis/signaling 99.5 4.1E-14 8.8E-19 158.0 5.9 100 391-493 430-529 (532)
11 smart00027 EH Eps15 homology d 99.2 3.1E-11 6.8E-16 112.4 9.3 84 4-87 7-90 (96)
12 KOG1955 Ral-GTPase effector RA 99.2 6.1E-12 1.3E-16 143.6 4.4 83 4-87 228-310 (737)
13 cd00052 EH Eps15 homology doma 99.0 9.7E-10 2.1E-14 93.8 8.2 67 9-75 1-67 (67)
14 KOG1954 Endocytosis/signaling 99.0 4.4E-10 9.5E-15 126.4 5.3 84 3-87 440-523 (532)
15 cd00052 EH Eps15 homology doma 99.0 2.3E-09 5.1E-14 91.4 8.3 67 409-475 1-67 (67)
16 PF00038 Filament: Intermediat 98.9 3.7E-08 8E-13 108.9 15.9 127 583-729 165-300 (312)
17 PF13499 EF-hand_7: EF-hand do 98.6 6.4E-08 1.4E-12 83.4 6.8 60 8-67 1-66 (66)
18 PF13499 EF-hand_7: EF-hand do 98.6 8.7E-08 1.9E-12 82.5 6.6 60 408-467 1-66 (66)
19 cd05022 S-100A13 S-100A13: S-1 98.4 8.2E-07 1.8E-11 83.3 8.1 72 6-77 7-83 (89)
20 cd05022 S-100A13 S-100A13: S-1 98.3 1.9E-06 4.1E-11 80.9 8.3 69 406-474 7-80 (89)
21 cd05027 S-100B S-100B: S-100B 98.3 3E-06 6.5E-11 79.1 8.9 71 6-76 7-86 (88)
22 cd05025 S-100A1 S-100A1: S-100 98.3 2.4E-06 5.1E-11 79.3 7.7 72 6-77 8-88 (92)
23 PTZ00183 centrin; Provisional 98.2 7.9E-06 1.7E-10 80.1 9.5 71 400-470 10-82 (158)
24 cd05031 S-100A10_like S-100A10 98.2 8.9E-06 1.9E-10 75.9 8.8 70 6-75 7-85 (94)
25 cd05026 S-100Z S-100Z: S-100Z 98.1 9.8E-06 2.1E-10 76.0 8.9 71 6-76 9-88 (93)
26 cd05027 S-100B S-100B: S-100B 98.1 1.2E-05 2.6E-10 75.1 9.2 67 406-472 7-82 (88)
27 PTZ00184 calmodulin; Provision 98.1 1.2E-05 2.6E-10 77.6 9.3 71 400-470 4-76 (149)
28 cd00213 S-100 S-100: S-100 dom 98.1 1.6E-05 3.4E-10 72.8 9.5 68 403-470 4-80 (88)
29 KOG0027 Calmodulin and related 98.1 7.7E-06 1.7E-10 82.1 7.8 64 6-69 84-149 (151)
30 cd05025 S-100A1 S-100A1: S-100 98.1 1.3E-05 2.7E-10 74.5 8.1 67 407-473 9-84 (92)
31 cd05031 S-100A10_like S-100A10 98.1 1.9E-05 4.1E-10 73.7 8.9 67 406-472 7-82 (94)
32 cd05029 S-100A6 S-100A6: S-100 98.0 2.4E-05 5.2E-10 73.1 9.5 71 402-472 3-82 (88)
33 cd05023 S-100A11 S-100A11: S-1 98.0 1.9E-05 4E-10 74.1 8.7 71 6-76 8-87 (89)
34 cd05029 S-100A6 S-100A6: S-100 98.0 1.5E-05 3.4E-10 74.4 8.2 67 7-73 10-83 (88)
35 COG5126 FRQ1 Ca2+-binding prot 98.0 1.3E-05 2.9E-10 82.8 7.9 65 4-68 89-155 (160)
36 PRK09039 hypothetical protein; 98.0 0.00019 4.1E-09 82.1 17.9 46 633-678 120-165 (343)
37 KOG0027 Calmodulin and related 98.0 2.6E-05 5.7E-10 78.3 9.3 75 401-475 2-78 (151)
38 cd05026 S-100Z S-100Z: S-100Z 98.0 3.5E-05 7.5E-10 72.4 9.2 66 407-472 10-84 (93)
39 cd00213 S-100 S-100: S-100 dom 98.0 3.3E-05 7.2E-10 70.7 8.7 68 5-72 6-82 (88)
40 PTZ00183 centrin; Provisional 97.9 2.5E-05 5.5E-10 76.6 7.9 66 5-70 15-82 (158)
41 cd05023 S-100A11 S-100A11: S-1 97.9 4.7E-05 1E-09 71.4 9.1 67 406-472 8-83 (89)
42 COG5126 FRQ1 Ca2+-binding prot 97.9 2.4E-05 5.3E-10 80.8 7.6 65 404-468 89-155 (160)
43 cd00051 EFh EF-hand, calcium b 97.9 3.7E-05 7.9E-10 62.2 7.0 59 409-467 2-62 (63)
44 cd00252 SPARC_EC SPARC_EC; ext 97.9 4E-05 8.7E-10 75.4 8.3 64 402-467 43-106 (116)
45 PF08317 Spc7: Spc7 kinetochor 97.9 0.0007 1.5E-08 76.8 18.8 132 585-723 154-297 (325)
46 KOG0041 Predicted Ca2+-binding 97.8 3.2E-05 6.9E-10 82.1 7.1 77 393-471 87-165 (244)
47 cd00252 SPARC_EC SPARC_EC; ext 97.8 5.5E-05 1.2E-09 74.4 8.0 59 7-67 48-106 (116)
48 PF09726 Macoilin: Transmembra 97.8 0.00049 1.1E-08 85.1 17.7 60 603-662 455-514 (697)
49 PTZ00184 calmodulin; Provision 97.8 6.9E-05 1.5E-09 72.4 8.0 66 5-70 9-76 (149)
50 cd00051 EFh EF-hand, calcium b 97.8 0.0001 2.2E-09 59.6 7.3 59 9-67 2-62 (63)
51 PRK09039 hypothetical protein; 97.7 0.0014 3E-08 75.2 18.7 101 583-683 77-184 (343)
52 PF13833 EF-hand_8: EF-hand do 97.7 6.8E-05 1.5E-09 62.7 5.9 49 20-68 1-52 (54)
53 smart00787 Spc7 Spc7 kinetocho 97.7 0.00098 2.1E-08 75.6 16.6 125 587-724 165-293 (312)
54 PRK11637 AmiB activator; Provi 97.7 0.0016 3.5E-08 76.1 18.5 62 587-648 61-122 (428)
55 PF13833 EF-hand_8: EF-hand do 97.7 8.3E-05 1.8E-09 62.2 5.6 49 420-468 1-52 (54)
56 KOG0977 Nuclear envelope prote 97.7 0.00014 3.1E-09 86.9 9.4 131 584-730 246-381 (546)
57 TIGR02169 SMC_prok_A chromosom 97.6 0.0018 3.8E-08 82.8 19.2 8 400-407 149-156 (1164)
58 TIGR02169 SMC_prok_A chromosom 97.6 0.0018 3.9E-08 82.8 19.2 20 694-713 461-480 (1164)
59 TIGR02168 SMC_prok_B chromosom 97.6 0.0024 5.1E-08 81.3 19.3 25 689-713 811-835 (1179)
60 TIGR02168 SMC_prok_B chromosom 97.6 0.0023 5E-08 81.4 19.1 19 49-70 28-46 (1179)
61 KOG0041 Predicted Ca2+-binding 97.5 0.00025 5.5E-09 75.5 7.0 67 5-71 97-165 (244)
62 cd05030 calgranulins Calgranul 97.4 0.00076 1.7E-08 62.8 8.4 66 406-471 7-81 (88)
63 cd05030 calgranulins Calgranul 97.4 0.00074 1.6E-08 62.9 8.3 67 7-73 8-83 (88)
64 KOG0250 DNA repair protein RAD 97.4 0.0059 1.3E-07 77.5 18.4 134 581-717 669-805 (1074)
65 PF10186 Atg14: UV radiation r 97.4 0.013 2.9E-07 64.0 19.1 131 589-722 22-161 (302)
66 TIGR01843 type_I_hlyD type I s 97.3 0.01 2.2E-07 67.8 18.3 70 645-716 198-267 (423)
67 KOG0034 Ca2+/calmodulin-depend 97.3 0.00067 1.5E-08 71.9 8.2 66 5-70 102-176 (187)
68 PF09726 Macoilin: Transmembra 97.3 0.0061 1.3E-07 75.8 17.5 103 580-684 467-579 (697)
69 PF08317 Spc7: Spc7 kinetochor 97.3 0.0068 1.5E-07 69.0 15.9 86 624-712 179-268 (325)
70 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.2 0.034 7.3E-07 55.8 18.9 125 581-711 4-128 (132)
71 PF13851 GAS: Growth-arrest sp 97.2 0.016 3.4E-07 62.3 17.5 135 589-723 29-178 (201)
72 PF07888 CALCOCO1: Calcium bin 97.2 0.0077 1.7E-07 72.6 16.5 82 581-662 151-232 (546)
73 KOG0964 Structural maintenance 97.2 0.0049 1.1E-07 77.1 15.2 139 581-728 679-822 (1200)
74 PF13851 GAS: Growth-arrest sp 97.2 0.022 4.7E-07 61.2 18.3 126 587-722 9-145 (201)
75 COG1196 Smc Chromosome segrega 97.2 0.0062 1.4E-07 79.6 16.8 78 604-681 379-456 (1163)
76 KOG0250 DNA repair protein RAD 97.2 0.0099 2.1E-07 75.6 17.6 46 600-645 343-388 (1074)
77 PF07888 CALCOCO1: Calcium bin 97.2 0.017 3.6E-07 69.8 18.7 48 581-628 165-212 (546)
78 PF04849 HAP1_N: HAP1 N-termin 97.2 0.011 2.3E-07 67.1 15.9 129 584-715 164-303 (306)
79 PF12718 Tropomyosin_1: Tropom 97.1 0.034 7.4E-07 56.8 18.1 39 589-627 23-61 (143)
80 COG1579 Zn-ribbon protein, pos 97.1 0.017 3.6E-07 63.7 16.8 98 587-684 31-137 (239)
81 PF15619 Lebercilin: Ciliary p 97.1 0.02 4.3E-07 61.3 16.8 114 603-716 70-192 (194)
82 PRK02224 chromosome segregatio 97.1 0.015 3.2E-07 73.5 18.5 12 402-413 147-159 (880)
83 COG1579 Zn-ribbon protein, pos 97.1 0.022 4.8E-07 62.7 17.3 55 623-677 90-144 (239)
84 KOG0034 Ca2+/calmodulin-depend 97.1 0.0017 3.7E-08 68.9 8.1 64 407-470 104-176 (187)
85 PHA02562 46 endonuclease subun 97.0 0.032 7E-07 66.7 19.5 60 654-716 341-400 (562)
86 PF04156 IncA: IncA protein; 97.0 0.024 5.2E-07 59.2 15.9 32 585-616 86-117 (191)
87 PF14658 EF-hand_9: EF-hand do 97.0 0.0017 3.7E-08 58.5 6.1 59 411-469 2-64 (66)
88 PF14658 EF-hand_9: EF-hand do 97.0 0.0017 3.7E-08 58.6 5.9 59 11-69 2-64 (66)
89 TIGR01843 type_I_hlyD type I s 96.9 0.036 7.8E-07 63.4 18.0 73 636-711 196-269 (423)
90 PF08614 ATG16: Autophagy prot 96.9 0.0057 1.2E-07 64.8 10.7 101 608-711 81-181 (194)
91 COG1196 Smc Chromosome segrega 96.9 0.027 5.8E-07 73.9 19.0 15 693-707 889-903 (1163)
92 PF12718 Tropomyosin_1: Tropom 96.9 0.048 1E-06 55.8 16.4 61 590-650 3-63 (143)
93 KOG1003 Actin filament-coating 96.9 0.07 1.5E-06 57.2 17.9 132 581-715 5-150 (205)
94 PF04156 IncA: IncA protein; 96.9 0.029 6.2E-07 58.6 15.1 25 604-628 91-115 (191)
95 KOG0161 Myosin class II heavy 96.9 0.034 7.3E-07 75.2 19.1 108 603-713 896-1010(1930)
96 PRK03918 chromosome segregatio 96.8 0.033 7.2E-07 70.2 18.3 16 743-758 747-762 (880)
97 PF10473 CENP-F_leu_zip: Leuci 96.8 0.087 1.9E-06 54.0 17.8 64 621-684 58-121 (140)
98 PF04111 APG6: Autophagy prote 96.8 0.008 1.7E-07 68.3 11.6 26 589-614 11-36 (314)
99 PRK02224 chromosome segregatio 96.8 0.032 7E-07 70.5 18.0 43 638-680 358-400 (880)
100 COG3883 Uncharacterized protei 96.8 0.084 1.8E-06 59.0 18.8 60 581-640 39-98 (265)
101 PF12128 DUF3584: Protein of u 96.8 0.037 7.9E-07 72.9 18.8 136 587-722 614-770 (1201)
102 PF00261 Tropomyosin: Tropomyo 96.8 0.064 1.4E-06 58.6 17.7 56 587-642 78-133 (237)
103 PRK04863 mukB cell division pr 96.8 0.042 9E-07 73.5 19.2 93 590-683 310-402 (1486)
104 smart00787 Spc7 Spc7 kinetocho 96.8 0.038 8.2E-07 63.1 16.3 58 651-711 205-262 (312)
105 PRK04863 mukB cell division pr 96.8 0.057 1.2E-06 72.3 20.2 118 628-746 368-506 (1486)
106 PF10168 Nup88: Nuclear pore c 96.7 0.078 1.7E-06 66.5 19.7 30 691-720 688-717 (717)
107 TIGR03007 pepcterm_ChnLen poly 96.7 0.048 1E-06 64.7 17.3 14 634-647 280-293 (498)
108 KOG0037 Ca2+-binding protein, 96.7 0.0054 1.2E-07 66.4 8.4 66 6-71 123-190 (221)
109 PLN02964 phosphatidylserine de 96.7 0.0053 1.2E-07 75.5 9.2 62 8-69 180-243 (644)
110 COG4372 Uncharacterized protei 96.7 0.11 2.4E-06 60.3 18.8 101 604-707 119-219 (499)
111 PF10481 CENP-F_N: Cenp-F N-te 96.7 0.054 1.2E-06 60.4 15.7 94 587-684 18-122 (307)
112 KOG0377 Protein serine/threoni 96.7 0.0037 8.1E-08 72.8 7.2 69 5-73 545-619 (631)
113 KOG0977 Nuclear envelope prote 96.7 0.04 8.8E-07 66.6 16.1 83 626-711 110-192 (546)
114 KOG0037 Ca2+-binding protein, 96.6 0.0068 1.5E-07 65.6 8.7 68 405-472 122-191 (221)
115 KOG0933 Structural maintenance 96.6 0.077 1.7E-06 67.3 18.2 105 603-713 771-875 (1174)
116 PF15619 Lebercilin: Ciliary p 96.6 0.19 4.1E-06 54.0 18.8 64 650-713 75-143 (194)
117 KOG0161 Myosin class II heavy 96.6 0.044 9.6E-07 74.1 17.2 124 589-715 903-1026(1930)
118 cd05024 S-100A10 S-100A10: A s 96.6 0.014 3E-07 55.8 9.3 69 7-76 8-83 (91)
119 KOG0044 Ca2+ sensor (EF-Hand s 96.5 0.006 1.3E-07 65.2 7.4 74 3-76 60-135 (193)
120 PHA02562 46 endonuclease subun 96.5 0.067 1.5E-06 64.1 17.1 36 627-662 335-370 (562)
121 PF10186 Atg14: UV radiation r 96.5 0.13 2.8E-06 56.4 18.0 92 612-706 60-151 (302)
122 PRK12309 transaldolase/EF-hand 96.5 0.0051 1.1E-07 71.9 7.3 55 6-71 333-387 (391)
123 KOG4302 Microtubule-associated 96.5 0.03 6.5E-07 69.0 14.0 131 586-726 38-205 (660)
124 TIGR01005 eps_transp_fam exopo 96.5 0.12 2.6E-06 64.8 19.5 88 633-720 320-408 (754)
125 KOG0377 Protein serine/threoni 96.5 0.0063 1.4E-07 71.0 7.7 69 406-474 546-620 (631)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.14 2.9E-06 51.6 16.0 62 623-684 25-86 (132)
127 KOG0996 Structural maintenance 96.5 0.053 1.2E-06 69.5 15.9 17 425-441 653-669 (1293)
128 PF00261 Tropomyosin: Tropomyo 96.4 0.22 4.7E-06 54.5 18.9 73 587-659 92-164 (237)
129 PF00036 EF-hand_1: EF hand; 96.4 0.0026 5.6E-08 48.5 2.9 27 42-68 1-27 (29)
130 KOG0971 Microtubule-associated 96.4 0.038 8.3E-07 69.0 14.3 173 580-754 332-532 (1243)
131 PF09304 Cortex-I_coil: Cortex 96.4 0.14 3E-06 50.4 15.2 81 582-683 11-91 (107)
132 TIGR03007 pepcterm_ChnLen poly 96.4 0.043 9.3E-07 65.1 14.5 12 441-452 81-92 (498)
133 KOG0028 Ca2+-binding protein ( 96.4 0.009 2E-07 62.2 7.5 63 6-68 105-169 (172)
134 KOG0243 Kinesin-like protein [ 96.4 0.12 2.7E-06 66.1 18.8 138 582-726 406-563 (1041)
135 TIGR01005 eps_transp_fam exopo 96.4 0.042 9E-07 68.7 14.8 17 439-455 83-99 (754)
136 PF00038 Filament: Intermediat 96.4 0.24 5.2E-06 55.5 19.2 25 692-716 259-283 (312)
137 PF05278 PEARLI-4: Arabidopsis 96.4 0.078 1.7E-06 59.3 15.0 95 589-684 151-248 (269)
138 PF11559 ADIP: Afadin- and alp 96.4 0.26 5.7E-06 50.2 17.7 94 613-712 57-150 (151)
139 KOG0044 Ca2+ sensor (EF-Hand s 96.3 0.0077 1.7E-07 64.4 6.9 74 407-480 64-139 (193)
140 COG4942 Membrane-bound metallo 96.3 0.24 5.2E-06 58.6 19.4 13 871-883 357-370 (420)
141 TIGR00606 rad50 rad50. This fa 96.3 0.058 1.2E-06 71.7 16.2 21 394-414 159-180 (1311)
142 KOG0976 Rho/Rac1-interacting s 96.3 0.13 2.8E-06 63.8 17.2 49 580-628 85-140 (1265)
143 COG4372 Uncharacterized protei 96.3 0.27 5.8E-06 57.3 18.7 118 588-715 138-258 (499)
144 PLN02964 phosphatidylserine de 96.2 0.014 3E-07 72.0 9.1 68 402-469 174-243 (644)
145 PF04111 APG6: Autophagy prote 96.2 0.24 5.3E-06 56.6 18.3 142 587-739 43-208 (314)
146 KOG0995 Centromere-associated 96.2 0.21 4.6E-06 60.5 18.2 79 580-658 235-316 (581)
147 KOG0980 Actin-binding protein 96.2 0.44 9.5E-06 60.1 21.1 84 601-684 386-479 (980)
148 KOG0976 Rho/Rac1-interacting s 96.1 0.087 1.9E-06 65.2 14.8 81 585-665 328-408 (1265)
149 KOG0996 Structural maintenance 96.1 0.086 1.9E-06 67.7 15.3 76 635-713 506-588 (1293)
150 PRK12309 transaldolase/EF-hand 96.1 0.012 2.6E-07 68.8 7.6 57 405-472 332-388 (391)
151 KOG0028 Ca2+-binding protein ( 96.1 0.017 3.6E-07 60.3 7.7 63 406-468 105-169 (172)
152 PF10146 zf-C4H2: Zinc finger- 96.1 0.093 2E-06 57.7 13.9 44 585-628 13-59 (230)
153 PRK04778 septation ring format 96.1 0.15 3.2E-06 62.4 16.9 50 666-718 378-427 (569)
154 PF15070 GOLGA2L5: Putative go 96.1 0.15 3.2E-06 63.2 16.8 61 648-711 158-218 (617)
155 PF14662 CCDC155: Coiled-coil 96.1 0.47 1E-05 51.0 18.2 24 692-715 120-143 (193)
156 PRK01156 chromosome segregatio 96.1 0.2 4.3E-06 63.9 18.5 7 401-407 146-152 (895)
157 PF11932 DUF3450: Protein of u 96.1 0.3 6.5E-06 53.7 17.5 79 604-682 38-116 (251)
158 PRK04778 septation ring format 96.1 0.12 2.5E-06 63.3 15.7 49 662-713 381-429 (569)
159 PF15397 DUF4618: Domain of un 96.1 0.27 5.8E-06 55.0 17.0 124 585-711 79-209 (258)
160 PF10498 IFT57: Intra-flagella 96.0 0.086 1.9E-06 61.3 13.8 83 599-684 232-314 (359)
161 PF06818 Fez1: Fez1; InterPro 96.0 0.31 6.8E-06 52.8 16.8 134 581-714 11-157 (202)
162 TIGR03017 EpsF chain length de 96.0 0.24 5.3E-06 57.9 17.6 51 634-684 287-338 (444)
163 cd05024 S-100A10 S-100A10: A s 96.0 0.031 6.6E-07 53.5 8.3 66 407-473 8-80 (91)
164 PF09789 DUF2353: Uncharacteri 96.0 0.23 5E-06 57.0 16.6 99 622-720 72-228 (319)
165 TIGR00606 rad50 rad50. This fa 96.0 0.24 5.3E-06 66.0 19.4 46 663-711 887-932 (1311)
166 KOG0239 Kinesin (KAR3 subfamil 96.0 0.14 2.9E-06 64.0 15.9 118 581-705 176-293 (670)
167 PF14662 CCDC155: Coiled-coil 96.0 0.5 1.1E-05 50.8 17.8 93 621-716 66-172 (193)
168 KOG0980 Actin-binding protein 95.9 0.26 5.5E-06 62.1 17.8 47 610-656 412-458 (980)
169 PF10146 zf-C4H2: Zinc finger- 95.9 0.15 3.3E-06 56.1 14.4 57 663-722 52-109 (230)
170 KOG4360 Uncharacterized coiled 95.9 0.19 4.2E-06 60.0 15.9 67 618-684 201-267 (596)
171 KOG0804 Cytoplasmic Zn-finger 95.9 0.18 3.8E-06 59.7 15.4 17 400-416 85-101 (493)
172 PF15066 CAGE1: Cancer-associa 95.9 0.17 3.6E-06 60.0 15.2 106 620-728 402-523 (527)
173 TIGR01000 bacteriocin_acc bact 95.9 0.2 4.3E-06 59.4 16.2 25 692-716 288-312 (457)
174 PF15070 GOLGA2L5: Putative go 95.9 0.3 6.4E-06 60.6 18.1 17 667-683 198-214 (617)
175 KOG0804 Cytoplasmic Zn-finger 95.9 0.33 7.2E-06 57.5 17.4 16 698-713 431-446 (493)
176 KOG0046 Ca2+-binding actin-bun 95.9 0.023 4.9E-07 67.8 8.1 76 397-473 7-89 (627)
177 PF10498 IFT57: Intra-flagella 95.8 0.29 6.2E-06 57.1 16.7 106 603-718 215-324 (359)
178 KOG4643 Uncharacterized coiled 95.8 0.21 4.5E-06 63.5 16.1 64 645-709 252-315 (1195)
179 PF05701 WEMBL: Weak chloropla 95.8 0.35 7.5E-06 58.8 17.9 63 622-684 295-357 (522)
180 PF12325 TMF_TATA_bd: TATA ele 95.7 0.4 8.8E-06 48.1 15.1 92 582-684 18-109 (120)
181 KOG0018 Structural maintenance 95.7 0.19 4.2E-06 64.2 15.8 106 604-722 662-767 (1141)
182 PF09602 PhaP_Bmeg: Polyhydrox 95.7 1.2 2.5E-05 47.1 18.9 119 594-716 15-135 (165)
183 PF13405 EF-hand_6: EF-hand do 95.7 0.013 2.8E-07 44.5 3.7 28 8-35 1-28 (31)
184 PF13870 DUF4201: Domain of un 95.7 0.61 1.3E-05 48.8 17.1 66 650-715 98-165 (177)
185 PF05911 DUF869: Plant protein 95.7 0.2 4.4E-06 63.2 15.8 43 642-684 651-693 (769)
186 PF13405 EF-hand_6: EF-hand do 95.7 0.013 2.9E-07 44.4 3.6 28 408-435 1-28 (31)
187 PF00036 EF-hand_1: EF hand; 95.6 0.011 2.3E-07 45.2 3.0 27 442-468 1-27 (29)
188 KOG0288 WD40 repeat protein Ti 95.6 0.14 3.1E-06 59.9 13.2 68 614-681 5-72 (459)
189 PF05701 WEMBL: Weak chloropla 95.6 0.39 8.5E-06 58.3 17.6 49 661-712 369-417 (522)
190 PF08614 ATG16: Autophagy prot 95.6 0.16 3.5E-06 53.9 12.7 75 603-677 97-171 (194)
191 PF15294 Leu_zip: Leucine zipp 95.6 0.28 6E-06 55.4 14.9 127 585-711 130-276 (278)
192 KOG0995 Centromere-associated 95.6 0.3 6.4E-06 59.3 16.0 71 581-651 253-323 (581)
193 PF10473 CENP-F_leu_zip: Leuci 95.5 0.34 7.4E-06 49.8 14.1 56 587-642 17-72 (140)
194 PF05667 DUF812: Protein of un 95.5 0.54 1.2E-05 58.1 18.3 46 580-625 328-373 (594)
195 PF09789 DUF2353: Uncharacteri 95.4 0.41 8.8E-06 55.1 15.9 77 580-656 86-167 (319)
196 TIGR03017 EpsF chain length de 95.4 0.4 8.7E-06 56.1 16.4 16 439-454 78-93 (444)
197 PF04849 HAP1_N: HAP1 N-termin 95.4 0.53 1.1E-05 53.8 16.6 14 400-413 34-47 (306)
198 KOG0994 Extracellular matrix g 95.4 0.51 1.1E-05 60.8 17.7 104 610-716 1600-1710(1758)
199 KOG4674 Uncharacterized conser 95.4 0.49 1.1E-05 64.0 18.6 131 587-717 1243-1382(1822)
200 PF10174 Cast: RIM-binding pro 95.4 0.59 1.3E-05 59.3 18.5 106 603-711 303-415 (775)
201 KOG0963 Transcription factor/C 95.4 0.22 4.8E-06 60.8 14.2 120 623-746 243-371 (629)
202 KOG0964 Structural maintenance 95.4 0.4 8.7E-06 61.0 16.6 115 603-720 253-381 (1200)
203 PF12795 MscS_porin: Mechanose 95.4 0.65 1.4E-05 50.8 16.7 56 662-717 155-214 (240)
204 PRK01156 chromosome segregatio 95.4 0.51 1.1E-05 60.3 18.2 28 692-719 420-447 (895)
205 KOG0971 Microtubule-associated 95.4 0.93 2E-05 57.5 19.4 44 584-627 228-281 (1243)
206 PF11932 DUF3450: Protein of u 95.3 0.35 7.6E-06 53.2 14.6 6 749-754 214-219 (251)
207 KOG1853 LIS1-interacting prote 95.3 0.52 1.1E-05 52.4 15.5 46 617-662 79-124 (333)
208 PF13202 EF-hand_5: EF hand; P 95.3 0.019 4.1E-07 42.4 3.2 24 10-33 2-25 (25)
209 PF10174 Cast: RIM-binding pro 95.3 0.61 1.3E-05 59.2 18.1 71 581-651 337-407 (775)
210 COG1340 Uncharacterized archae 95.3 0.36 7.9E-06 54.8 14.5 71 582-652 22-92 (294)
211 COG1340 Uncharacterized archae 95.3 0.57 1.2E-05 53.3 16.0 91 587-684 158-248 (294)
212 KOG4673 Transcription factor T 95.3 0.43 9.4E-06 58.8 15.9 79 585-663 407-487 (961)
213 KOG0979 Structural maintenance 95.3 0.5 1.1E-05 60.4 17.0 108 607-717 247-354 (1072)
214 KOG0030 Myosin essential light 95.2 0.048 1E-06 55.9 6.9 72 401-474 5-82 (152)
215 PF05667 DUF812: Protein of un 95.2 0.61 1.3E-05 57.7 17.5 47 582-628 323-369 (594)
216 PF06818 Fez1: Fez1; InterPro 95.2 0.26 5.7E-06 53.3 12.6 94 604-714 13-106 (202)
217 KOG0946 ER-Golgi vesicle-tethe 95.2 0.27 5.9E-06 61.4 14.2 29 622-650 737-765 (970)
218 TIGR03185 DNA_S_dndD DNA sulfu 95.2 0.6 1.3E-05 58.0 17.4 8 706-713 506-513 (650)
219 PF15397 DUF4618: Domain of un 95.1 0.52 1.1E-05 52.8 15.1 125 580-713 81-225 (258)
220 COG3883 Uncharacterized protei 95.1 1.5 3.3E-05 49.4 18.7 58 580-637 45-102 (265)
221 PRK10884 SH3 domain-containing 95.1 0.23 5E-06 53.9 12.0 16 696-711 154-169 (206)
222 TIGR03794 NHPM_micro_HlyD NHPM 95.1 0.63 1.4E-05 54.6 16.6 26 694-719 226-251 (421)
223 PF12128 DUF3584: Protein of u 95.1 0.8 1.7E-05 60.8 19.3 25 660-684 681-705 (1201)
224 PF09304 Cortex-I_coil: Cortex 95.1 0.58 1.3E-05 46.2 13.4 99 613-714 7-105 (107)
225 KOG4223 Reticulocalbin, calume 95.1 0.024 5.3E-07 64.4 4.7 64 6-69 76-141 (325)
226 KOG0031 Myosin regulatory ligh 95.1 0.08 1.7E-06 55.1 8.0 61 8-68 102-164 (171)
227 PRK11519 tyrosine kinase; Prov 95.0 0.51 1.1E-05 59.3 16.6 26 603-628 269-294 (719)
228 COG4942 Membrane-bound metallo 95.0 1.1 2.5E-05 53.1 18.2 17 668-684 158-174 (420)
229 PF06160 EzrA: Septation ring 95.0 1.1 2.4E-05 55.0 18.9 113 603-717 254-366 (560)
230 KOG0982 Centrosomal protein Nu 95.0 0.29 6.2E-06 57.6 12.9 37 671-710 403-439 (502)
231 PRK09841 cryptic autophosphory 95.0 0.41 8.8E-06 60.2 15.4 27 603-629 269-295 (726)
232 KOG0994 Extracellular matrix g 94.9 0.82 1.8E-05 59.1 17.5 122 587-711 1542-1670(1758)
233 PF10591 SPARC_Ca_bdg: Secrete 94.9 0.011 2.4E-07 58.0 1.4 64 402-465 49-112 (113)
234 PRK10476 multidrug resistance 94.9 1 2.2E-05 51.4 17.2 28 652-679 154-181 (346)
235 KOG0946 ER-Golgi vesicle-tethe 94.9 0.47 1E-05 59.5 15.2 44 603-646 673-716 (970)
236 KOG1899 LAR transmembrane tyro 94.9 0.58 1.2E-05 57.3 15.3 89 632-720 177-270 (861)
237 KOG0031 Myosin regulatory ligh 94.9 0.09 2E-06 54.8 7.7 62 407-468 101-164 (171)
238 PRK10884 SH3 domain-containing 94.8 0.21 4.4E-06 54.2 10.8 23 606-628 91-113 (206)
239 PF10168 Nup88: Nuclear pore c 94.8 0.46 9.9E-06 59.9 15.3 73 587-659 543-616 (717)
240 PF05911 DUF869: Plant protein 94.8 0.93 2E-05 57.6 17.8 46 587-632 24-80 (769)
241 PRK11519 tyrosine kinase; Prov 94.8 0.2 4.3E-06 62.9 12.1 22 692-713 374-395 (719)
242 PF09755 DUF2046: Uncharacteri 94.7 2 4.3E-05 49.4 18.5 21 693-713 227-247 (310)
243 PF09738 DUF2051: Double stran 94.7 1.6 3.4E-05 50.1 17.8 122 583-713 80-237 (302)
244 PRK09841 cryptic autophosphory 94.7 0.8 1.7E-05 57.7 17.0 24 692-715 374-397 (726)
245 PF12795 MscS_porin: Mechanose 94.6 0.74 1.6E-05 50.4 14.6 24 690-713 145-168 (240)
246 PRK11281 hypothetical protein; 94.6 0.29 6.3E-06 64.1 13.1 80 634-713 126-210 (1113)
247 PRK03947 prefoldin subunit alp 94.6 0.75 1.6E-05 46.3 13.4 25 589-613 8-32 (140)
248 PF07798 DUF1640: Protein of u 94.6 2.1 4.5E-05 45.2 17.2 41 669-715 118-158 (177)
249 PF04012 PspA_IM30: PspA/IM30 94.6 4.7 0.0001 43.4 20.3 92 627-718 89-188 (221)
250 PF06008 Laminin_I: Laminin Do 94.5 1.5 3.2E-05 48.6 16.9 21 693-713 183-203 (264)
251 PRK03947 prefoldin subunit alp 94.5 0.8 1.7E-05 46.1 13.5 15 695-709 122-136 (140)
252 PF09730 BicD: Microtubule-ass 94.5 0.98 2.1E-05 56.9 16.9 21 712-732 167-187 (717)
253 PRK10361 DNA recombination pro 94.5 2.1 4.6E-05 51.8 19.0 53 666-718 142-195 (475)
254 KOG0978 E3 ubiquitin ligase in 94.5 0.94 2E-05 56.7 16.5 50 635-684 551-600 (698)
255 PF14915 CCDC144C: CCDC144C pr 94.5 1.7 3.7E-05 49.6 17.0 22 662-683 219-240 (305)
256 PRK10929 putative mechanosensi 94.5 1 2.2E-05 59.3 17.5 24 691-714 211-234 (1109)
257 COG0419 SbcC ATPase involved i 94.5 1.1 2.5E-05 57.6 17.9 18 696-713 727-744 (908)
258 PF13514 AAA_27: AAA domain 94.4 1.4 3E-05 58.2 18.7 88 635-722 742-842 (1111)
259 PRK11281 hypothetical protein; 94.4 0.64 1.4E-05 61.1 15.5 120 604-723 124-255 (1113)
260 PF10591 SPARC_Ca_bdg: Secrete 94.4 0.02 4.4E-07 56.2 1.7 58 8-65 55-112 (113)
261 PF13805 Pil1: Eisosome compon 94.3 3.4 7.5E-05 46.8 19.0 107 607-713 81-190 (271)
262 KOG0933 Structural maintenance 94.3 1.6 3.5E-05 56.1 17.8 71 611-681 825-895 (1174)
263 TIGR02680 conserved hypothetic 94.3 1.8 3.8E-05 58.4 19.6 19 456-474 175-193 (1353)
264 PF12325 TMF_TATA_bd: TATA ele 94.3 1.5 3.3E-05 44.1 14.6 41 630-670 69-109 (120)
265 PF10267 Tmemb_cc2: Predicted 94.3 0.98 2.1E-05 53.4 15.3 27 404-435 29-55 (395)
266 PF07111 HCR: Alpha helical co 94.3 1.4 3.1E-05 54.9 17.0 82 630-713 515-600 (739)
267 KOG0978 E3 ubiquitin ligase in 94.2 1.8 3.8E-05 54.4 18.0 74 635-711 544-617 (698)
268 KOG0288 WD40 repeat protein Ti 94.2 1.6 3.5E-05 51.5 16.6 132 580-726 13-144 (459)
269 KOG4674 Uncharacterized conser 94.2 1.4 3.1E-05 59.8 18.2 123 588-713 137-270 (1822)
270 PF07851 TMPIT: TMPIT-like pro 94.2 0.32 6.9E-06 56.1 10.9 88 586-680 3-91 (330)
271 TIGR02231 conserved hypothetic 94.2 0.3 6.6E-06 58.9 11.3 100 582-684 73-172 (525)
272 smart00502 BBC B-Box C-termina 94.2 2 4.4E-05 40.9 14.8 14 703-716 109-122 (127)
273 TIGR03319 YmdA_YtgF conserved 94.1 1.8 3.9E-05 52.8 17.7 71 611-681 58-128 (514)
274 KOG0040 Ca2+-binding actin-bun 94.1 0.1 2.2E-06 68.1 7.4 67 401-467 2247-2322(2399)
275 PF04582 Reo_sigmaC: Reovirus 94.1 0.047 1E-06 62.5 4.2 61 624-684 65-125 (326)
276 PF09730 BicD: Microtubule-ass 94.1 1.4 3.1E-05 55.5 17.1 12 587-598 34-45 (717)
277 KOG4643 Uncharacterized coiled 94.1 1.7 3.7E-05 55.9 17.6 52 669-723 528-581 (1195)
278 KOG0036 Predicted mitochondria 94.1 0.092 2E-06 61.5 6.4 65 7-71 82-148 (463)
279 TIGR03185 DNA_S_dndD DNA sulfu 94.0 1.7 3.7E-05 54.1 17.7 46 637-682 422-467 (650)
280 PRK10698 phage shock protein P 94.0 4.4 9.6E-05 44.5 18.8 49 633-681 96-144 (222)
281 COG1842 PspA Phage shock prote 94.0 5 0.00011 44.4 19.2 102 580-681 31-144 (225)
282 PF03148 Tektin: Tektin family 94.0 3.2 6.8E-05 48.9 18.8 57 603-659 246-302 (384)
283 PF13514 AAA_27: AAA domain 94.0 1.5 3.2E-05 57.8 17.8 59 651-710 897-955 (1111)
284 PRK10869 recombination and rep 93.9 1.3 2.8E-05 54.3 16.2 27 703-729 371-398 (553)
285 KOG0612 Rho-associated, coiled 93.9 1.4 3E-05 57.6 16.7 18 280-297 206-223 (1317)
286 TIGR02680 conserved hypothetic 93.9 2.5 5.3E-05 57.1 19.9 28 695-722 375-402 (1353)
287 PF02050 FliJ: Flagellar FliJ 93.9 3.5 7.5E-05 38.7 15.6 37 634-670 50-86 (123)
288 PF09728 Taxilin: Myosin-like 93.9 1.7 3.8E-05 49.8 16.0 117 582-705 24-152 (309)
289 PF15556 Zwint: ZW10 interacto 93.8 9 0.0002 41.9 19.9 72 651-732 135-206 (252)
290 COG5185 HEC1 Protein involved 93.8 3.2 7E-05 49.8 18.0 109 635-746 329-464 (622)
291 TIGR00634 recN DNA repair prot 93.8 1.7 3.6E-05 53.3 16.6 25 704-728 377-402 (563)
292 PF09755 DUF2046: Uncharacteri 93.7 2.2 4.8E-05 49.0 16.2 13 699-711 160-172 (310)
293 TIGR00998 8a0101 efflux pump m 93.7 2 4.4E-05 48.2 16.0 9 588-596 81-89 (334)
294 PF13870 DUF4201: Domain of un 93.7 5.6 0.00012 41.7 18.2 86 629-724 56-141 (177)
295 PF13166 AAA_13: AAA domain 93.7 1.6 3.5E-05 54.2 16.6 51 666-719 412-472 (712)
296 KOG0612 Rho-associated, coiled 93.6 1.3 2.8E-05 57.9 15.6 19 23-41 156-175 (1317)
297 KOG0030 Myosin essential light 93.6 0.22 4.7E-06 51.3 7.3 73 4-76 8-84 (152)
298 COG3206 GumC Uncharacterized p 93.6 2.3 5E-05 50.6 17.1 51 666-716 344-394 (458)
299 PRK12704 phosphodiesterase; Pr 93.6 2.6 5.6E-05 51.6 17.7 12 613-624 66-77 (520)
300 PRK00286 xseA exodeoxyribonucl 93.6 2.9 6.2E-05 49.6 17.7 15 666-680 352-366 (438)
301 KOG1655 Protein involved in va 93.6 1.5 3.3E-05 47.4 13.7 154 582-766 28-185 (218)
302 TIGR01000 bacteriocin_acc bact 93.6 2.4 5.2E-05 50.5 17.2 15 699-713 288-302 (457)
303 cd00176 SPEC Spectrin repeats, 93.6 3.4 7.3E-05 41.8 15.9 56 663-718 152-209 (213)
304 PTZ00464 SNF-7-like protein; P 93.6 3 6.5E-05 45.6 16.4 26 695-720 124-149 (211)
305 KOG0999 Microtubule-associated 93.6 3.4 7.3E-05 50.4 17.9 20 581-600 44-63 (772)
306 KOG2196 Nuclear porin [Nuclear 93.5 1.3 2.9E-05 49.1 13.6 119 589-717 76-207 (254)
307 KOG4302 Microtubule-associated 93.5 1.7 3.6E-05 54.4 16.0 115 603-717 49-182 (660)
308 PRK00106 hypothetical protein; 93.5 2.7 5.9E-05 51.6 17.7 33 648-680 116-148 (535)
309 PF10234 Cluap1: Clusterin-ass 93.5 1.8 3.9E-05 48.9 15.0 87 634-726 167-253 (267)
310 PF15272 BBP1_C: Spindle pole 93.5 3.4 7.4E-05 44.8 16.4 147 601-760 37-194 (196)
311 TIGR02132 phaR_Bmeg polyhydrox 93.5 1.9 4.1E-05 46.1 14.1 24 699-722 154-177 (189)
312 PF05483 SCP-1: Synaptonemal c 93.5 3.3 7.2E-05 51.6 18.1 60 581-640 507-566 (786)
313 COG4477 EzrA Negative regulato 93.5 2.7 5.8E-05 51.2 17.0 131 587-719 229-371 (570)
314 PF14073 Cep57_CLD: Centrosome 93.5 2.3 5.1E-05 45.4 14.9 99 604-705 74-172 (178)
315 cd00632 Prefoldin_beta Prefold 93.4 1.1 2.4E-05 43.3 11.6 22 604-625 9-30 (105)
316 PF06705 SF-assemblin: SF-asse 93.4 5.1 0.00011 44.2 18.2 14 698-711 149-162 (247)
317 KOG0038 Ca2+-binding kinase in 93.4 0.11 2.5E-06 53.6 5.0 56 12-67 113-175 (189)
318 TIGR02977 phageshock_pspA phag 93.4 6.8 0.00015 42.7 18.8 55 629-683 92-146 (219)
319 PF09731 Mitofilin: Mitochondr 93.4 3.8 8.3E-05 50.2 18.9 23 694-716 377-399 (582)
320 PF10211 Ax_dynein_light: Axon 93.4 1.6 3.5E-05 46.7 13.8 12 699-710 167-178 (189)
321 KOG0999 Microtubule-associated 93.3 2.2 4.8E-05 51.9 15.9 26 658-683 108-133 (772)
322 PF13202 EF-hand_5: EF hand; P 93.3 0.07 1.5E-06 39.4 2.5 25 43-67 1-25 (25)
323 PF05010 TACC: Transforming ac 93.3 6.9 0.00015 42.9 18.5 20 692-711 165-184 (207)
324 PF02403 Seryl_tRNA_N: Seryl-t 93.3 0.86 1.9E-05 43.9 10.6 69 650-718 29-97 (108)
325 KOG0036 Predicted mitochondria 93.3 0.18 3.9E-06 59.2 6.9 64 407-470 82-147 (463)
326 PF06008 Laminin_I: Laminin Do 93.2 2.2 4.7E-05 47.4 15.1 67 591-657 49-115 (264)
327 PRK12705 hypothetical protein; 93.2 2.8 6E-05 51.3 17.0 66 611-676 59-124 (508)
328 COG5185 HEC1 Protein involved 93.2 3.4 7.3E-05 49.6 17.0 79 634-712 314-399 (622)
329 TIGR02977 phageshock_pspA phag 93.1 3.2 7E-05 45.1 15.9 51 649-702 98-148 (219)
330 PF08702 Fib_alpha: Fibrinogen 93.1 3.4 7.4E-05 42.8 15.2 94 585-684 34-131 (146)
331 TIGR01010 BexC_CtrB_KpsE polys 93.1 1.5 3.3E-05 50.5 14.0 76 601-683 170-261 (362)
332 KOG2991 Splicing regulator [RN 93.1 4.8 0.0001 45.3 16.9 77 652-728 238-318 (330)
333 PF02994 Transposase_22: L1 tr 93.1 0.13 2.9E-06 59.9 5.6 108 609-723 85-196 (370)
334 COG1842 PspA Phage shock prote 93.0 3.6 7.8E-05 45.4 16.1 19 666-684 101-119 (225)
335 PF07106 TBPIP: Tat binding pr 93.0 1.3 2.8E-05 46.0 12.2 23 663-685 115-137 (169)
336 KOG1937 Uncharacterized conser 93.0 3.2 7E-05 49.6 16.4 52 603-654 267-318 (521)
337 KOG3091 Nuclear pore complex, 93.0 0.94 2E-05 54.4 12.4 106 582-718 378-506 (508)
338 PF03148 Tektin: Tektin family 93.0 4.5 9.7E-05 47.7 17.9 122 590-717 221-360 (384)
339 COG1382 GimC Prefoldin, chaper 93.0 2.4 5.2E-05 42.8 13.4 31 653-683 80-110 (119)
340 KOG0018 Structural maintenance 93.0 2.8 6E-05 54.4 17.0 125 587-711 676-823 (1141)
341 TIGR00020 prfB peptide chain r 93.0 2.7 5.9E-05 49.4 16.0 141 583-724 3-163 (364)
342 KOG2891 Surface glycoprotein [ 93.0 2.2 4.7E-05 48.3 14.3 41 666-713 392-432 (445)
343 COG3096 MukB Uncharacterized p 93.0 1.5 3.2E-05 54.7 14.1 106 603-711 986-1110(1480)
344 TIGR02971 heterocyst_DevB ABC 93.0 5.5 0.00012 44.9 18.0 25 695-719 179-203 (327)
345 PF12252 SidE: Dot/Icm substra 92.9 1.5 3.4E-05 56.4 14.5 68 651-720 1161-1229(1439)
346 PRK03598 putative efflux pump 92.9 2.3 4.9E-05 48.2 15.0 56 657-717 145-200 (331)
347 TIGR02338 gimC_beta prefoldin, 92.9 2.7 5.9E-05 41.1 13.4 32 590-621 6-37 (110)
348 PF08172 CASP_C: CASP C termin 92.8 0.87 1.9E-05 50.8 11.2 108 584-702 3-135 (248)
349 COG1382 GimC Prefoldin, chaper 92.8 1.6 3.5E-05 44.0 11.9 33 652-684 72-104 (119)
350 PF13166 AAA_13: AAA domain 92.8 2 4.3E-05 53.5 15.5 18 453-470 176-193 (712)
351 KOG4637 Adaptor for phosphoino 92.8 2 4.4E-05 50.2 14.1 21 455-475 81-101 (464)
352 COG0419 SbcC ATPase involved i 92.8 4 8.7E-05 52.8 18.6 61 651-711 316-377 (908)
353 COG4026 Uncharacterized protei 92.7 2 4.3E-05 47.3 13.2 50 633-682 132-181 (290)
354 KOG0243 Kinesin-like protein [ 92.7 2.7 5.9E-05 54.6 16.5 55 407-464 166-234 (1041)
355 PF10481 CENP-F_N: Cenp-F N-te 92.7 2.9 6.2E-05 47.3 14.7 106 604-719 21-133 (307)
356 PF12072 DUF3552: Domain of un 92.7 6.6 0.00014 42.3 17.2 71 612-682 61-131 (201)
357 PF00015 MCPsignal: Methyl-acc 92.7 1.4 2.9E-05 45.9 11.8 10 708-717 200-209 (213)
358 PRK10698 phage shock protein P 92.6 11 0.00023 41.5 19.0 34 651-684 100-133 (222)
359 COG4026 Uncharacterized protei 92.6 0.71 1.5E-05 50.6 9.8 52 633-684 153-204 (290)
360 PF04012 PspA_IM30: PspA/IM30 92.6 5.9 0.00013 42.7 16.9 33 652-684 100-132 (221)
361 TIGR03752 conj_TIGR03752 integ 92.6 0.91 2E-05 54.5 11.6 13 741-753 171-183 (472)
362 PF00769 ERM: Ezrin/radixin/mo 92.6 3.8 8.1E-05 45.6 15.8 46 663-711 81-126 (246)
363 PF06721 DUF1204: Protein of u 92.6 1.6 3.5E-05 46.8 12.1 39 691-729 87-128 (228)
364 KOG1962 B-cell receptor-associ 92.6 1.1 2.4E-05 49.1 11.3 47 633-679 162-208 (216)
365 COG2433 Uncharacterized conser 92.6 4.4 9.5E-05 50.1 17.2 74 652-734 476-556 (652)
366 PF00015 MCPsignal: Methyl-acc 92.5 2.7 5.8E-05 43.7 13.7 59 624-682 102-160 (213)
367 PRK10246 exonuclease subunit S 92.5 2.6 5.7E-05 55.4 16.7 27 692-718 857-883 (1047)
368 PRK00106 hypothetical protein; 92.5 6.5 0.00014 48.4 18.8 29 652-680 99-127 (535)
369 PF06160 EzrA: Septation ring 92.5 2.9 6.2E-05 51.5 16.0 19 666-684 374-392 (560)
370 PF14915 CCDC144C: CCDC144C pr 92.5 8.4 0.00018 44.2 18.2 101 600-703 143-243 (305)
371 PTZ00446 vacuolar sorting prot 92.5 9.8 0.00021 41.3 18.0 126 587-719 27-154 (191)
372 KOG2129 Uncharacterized conser 92.4 2.5 5.5E-05 49.9 14.5 109 603-711 181-301 (552)
373 TIGR00634 recN DNA repair prot 92.4 2.2 4.7E-05 52.3 14.9 91 623-713 267-371 (563)
374 PRK09343 prefoldin subunit bet 92.4 3.2 6.9E-05 41.6 13.4 33 588-620 8-40 (121)
375 KOG0963 Transcription factor/C 92.4 5.7 0.00012 49.2 17.9 26 659-684 244-269 (629)
376 COG4913 Uncharacterized protei 92.4 4 8.6E-05 51.3 16.5 44 710-760 451-495 (1104)
377 PF05266 DUF724: Protein of un 92.4 4 8.7E-05 44.0 15.0 97 603-713 88-184 (190)
378 PRK00578 prfB peptide chain re 92.3 3 6.5E-05 49.1 15.2 139 585-724 5-163 (367)
379 PF09787 Golgin_A5: Golgin sub 92.3 6.7 0.00014 47.9 18.7 68 644-711 208-297 (511)
380 cd00176 SPEC Spectrin repeats, 92.3 3.3 7.2E-05 41.9 13.9 69 582-660 35-103 (213)
381 KOG1853 LIS1-interacting prote 92.3 8.6 0.00019 43.2 17.6 75 600-684 44-118 (333)
382 COG2433 Uncharacterized conser 92.3 1.2 2.5E-05 54.8 12.0 92 624-722 424-515 (652)
383 PRK09343 prefoldin subunit bet 92.3 3.9 8.5E-05 40.9 13.9 19 700-718 97-115 (121)
384 PF07106 TBPIP: Tat binding pr 92.2 0.43 9.2E-06 49.6 7.4 55 630-684 73-129 (169)
385 PRK00409 recombination and DNA 92.2 3.9 8.4E-05 52.4 17.2 50 660-710 573-622 (782)
386 KOG4572 Predicted DNA-binding 92.2 2.6 5.6E-05 53.1 14.8 65 601-666 968-1032(1424)
387 PF04582 Reo_sigmaC: Reovirus 92.2 0.13 2.8E-06 59.1 3.8 88 590-684 45-132 (326)
388 PF09738 DUF2051: Double stran 92.2 2.2 4.8E-05 48.9 13.6 57 651-717 113-169 (302)
389 PF15066 CAGE1: Cancer-associa 92.1 3.8 8.3E-05 49.2 15.6 87 604-697 341-434 (527)
390 PRK10869 recombination and rep 92.1 5.7 0.00012 48.9 17.9 48 666-713 319-366 (553)
391 PF09728 Taxilin: Myosin-like 92.1 11 0.00023 43.6 18.9 81 630-713 203-283 (309)
392 PF09787 Golgin_A5: Golgin sub 92.1 2 4.4E-05 52.2 14.0 33 638-670 276-308 (511)
393 PF10046 BLOC1_2: Biogenesis o 92.1 2.7 5.8E-05 40.7 12.1 59 654-723 39-97 (99)
394 COG0497 RecN ATPase involved i 92.0 3.2 6.9E-05 51.1 15.4 131 584-722 168-320 (557)
395 PF04949 Transcrip_act: Transc 92.0 17 0.00037 38.1 18.2 43 635-677 83-125 (159)
396 TIGR00237 xseA exodeoxyribonuc 92.0 7.1 0.00015 46.7 18.1 37 645-681 302-339 (432)
397 KOG4223 Reticulocalbin, calume 92.0 0.21 4.6E-06 57.0 5.2 73 400-472 69-144 (325)
398 PF15456 Uds1: Up-regulated Du 91.9 2.2 4.8E-05 43.1 11.8 93 575-683 18-121 (124)
399 PF08702 Fib_alpha: Fibrinogen 91.9 7 0.00015 40.6 15.6 32 653-684 93-124 (146)
400 KOG4360 Uncharacterized coiled 91.9 8.7 0.00019 46.8 18.2 48 653-700 271-318 (596)
401 PF00435 Spectrin: Spectrin re 91.9 2.8 6.1E-05 37.8 11.5 54 665-718 49-103 (105)
402 KOG1850 Myosin-like coiled-coi 91.9 11 0.00024 43.6 18.2 114 605-718 113-231 (391)
403 PF05622 HOOK: HOOK protein; 91.8 0.048 1E-06 68.1 0.0 18 603-620 317-334 (713)
404 PF05557 MAD: Mitotic checkpoi 91.8 1.2 2.6E-05 56.0 12.1 84 628-711 502-622 (722)
405 KOG3647 Predicted coiled-coil 91.8 3.6 7.9E-05 46.4 14.1 77 603-679 107-183 (338)
406 PF06120 Phage_HK97_TLTM: Tail 91.8 4.6 0.0001 46.4 15.5 32 650-681 134-165 (301)
407 PF01576 Myosin_tail_1: Myosin 91.8 0.05 1.1E-06 69.5 0.0 143 583-728 408-555 (859)
408 KOG3850 Predicted membrane pro 91.7 5.8 0.00012 46.7 16.1 14 437-450 76-89 (455)
409 KOG4807 F-actin binding protei 91.7 8.3 0.00018 45.6 17.3 70 639-711 413-486 (593)
410 KOG4460 Nuclear pore complex, 91.7 7.3 0.00016 47.7 17.4 54 606-659 586-639 (741)
411 TIGR01541 tape_meas_lam_C phag 91.7 8.9 0.00019 44.6 17.9 70 668-748 94-163 (332)
412 PF05010 TACC: Transforming ac 91.6 15 0.00033 40.2 18.5 34 674-710 164-197 (207)
413 KOG2751 Beclin-like protein [S 91.5 3.8 8.2E-05 48.8 14.7 129 603-733 192-335 (447)
414 PRK10361 DNA recombination pro 91.5 9.6 0.00021 46.4 18.3 19 691-709 143-161 (475)
415 PF05557 MAD: Mitotic checkpoi 91.4 0.056 1.2E-06 67.6 0.0 54 585-638 91-144 (722)
416 KOG0972 Huntingtin interacting 91.4 3.3 7.2E-05 47.2 13.5 97 588-684 249-355 (384)
417 PF06248 Zw10: Centromere/kine 91.4 3.5 7.6E-05 50.8 15.3 98 582-684 9-116 (593)
418 PLN03229 acetyl-coenzyme A car 91.4 3.9 8.5E-05 51.7 15.5 70 669-741 576-650 (762)
419 KOG2129 Uncharacterized conser 91.4 14 0.00029 44.2 18.7 118 583-713 182-317 (552)
420 PF14788 EF-hand_10: EF hand; 91.4 0.44 9.5E-06 41.5 5.3 48 423-470 1-50 (51)
421 TIGR01010 BexC_CtrB_KpsE polys 91.3 1.9 4.2E-05 49.6 12.1 87 585-671 175-263 (362)
422 PF08581 Tup_N: Tup N-terminal 91.3 4 8.6E-05 38.5 11.9 67 635-714 10-76 (79)
423 KOG4251 Calcium binding protei 91.3 0.18 3.8E-06 55.8 3.5 62 404-465 98-164 (362)
424 KOG0046 Ca2+-binding actin-bun 91.3 0.46 9.9E-06 57.3 7.1 65 5-70 17-86 (627)
425 COG3206 GumC Uncharacterized p 91.3 6.2 0.00013 47.1 16.6 79 631-716 315-401 (458)
426 PF06120 Phage_HK97_TLTM: Tail 91.2 11 0.00024 43.5 17.7 44 666-712 129-172 (301)
427 PF04912 Dynamitin: Dynamitin 91.2 5.5 0.00012 46.8 15.8 124 582-713 248-386 (388)
428 KOG0979 Structural maintenance 91.2 4.5 9.7E-05 52.4 15.8 61 622-682 297-357 (1072)
429 PRK10929 putative mechanosensi 91.2 3.7 7.9E-05 54.4 15.6 48 585-632 185-232 (1109)
430 KOG4593 Mitotic checkpoint pro 91.1 11 0.00024 47.3 18.7 42 690-733 213-256 (716)
431 KOG4593 Mitotic checkpoint pro 91.1 11 0.00024 47.3 18.6 45 670-714 247-294 (716)
432 KOG4673 Transcription factor T 91.1 10 0.00022 47.5 18.0 23 696-718 606-631 (961)
433 PF11180 DUF2968: Protein of u 91.0 3.1 6.8E-05 44.9 12.3 26 658-683 155-180 (192)
434 TIGR02473 flagell_FliJ flagell 91.0 17 0.00038 35.9 17.8 32 595-626 21-52 (141)
435 KOG1937 Uncharacterized conser 90.9 9.1 0.0002 46.0 16.9 30 693-722 401-430 (521)
436 KOG4657 Uncharacterized conser 90.9 11 0.00023 42.0 16.2 21 658-678 101-121 (246)
437 PLN02939 transferase, transfer 90.9 4 8.7E-05 53.2 15.3 30 621-650 225-254 (977)
438 TIGR03319 YmdA_YtgF conserved 90.8 11 0.00023 46.4 18.2 8 726-733 206-213 (514)
439 KOG0239 Kinesin (KAR3 subfamil 90.8 3.4 7.4E-05 52.0 14.4 20 698-717 303-322 (670)
440 KOG1962 B-cell receptor-associ 90.8 3.8 8.3E-05 45.1 12.9 64 655-721 149-212 (216)
441 KOG0962 DNA repair protein RAD 90.7 5.8 0.00013 52.8 16.6 41 641-681 869-909 (1294)
442 PRK10246 exonuclease subunit S 90.7 11 0.00023 49.9 19.4 69 646-714 720-803 (1047)
443 KOG4460 Nuclear pore complex, 90.7 8.2 0.00018 47.3 16.4 123 590-717 591-731 (741)
444 PF14788 EF-hand_10: EF hand; 90.6 0.6 1.3E-05 40.6 5.4 47 23-69 1-49 (51)
445 PF15254 CCDC14: Coiled-coil d 90.6 4.5 9.7E-05 51.1 14.8 68 634-704 492-559 (861)
446 PF05483 SCP-1: Synaptonemal c 90.6 11 0.00023 47.4 17.7 95 590-684 179-274 (786)
447 PF15450 DUF4631: Domain of un 90.5 7.4 0.00016 47.5 16.1 118 603-725 393-516 (531)
448 PF00769 ERM: Ezrin/radixin/mo 90.5 7.7 0.00017 43.2 15.4 72 650-724 61-133 (246)
449 cd07651 F-BAR_PombeCdc15_like 90.5 13 0.00029 40.6 17.0 35 624-658 109-143 (236)
450 PF13863 DUF4200: Domain of un 90.5 15 0.00032 36.2 15.8 44 641-684 65-108 (126)
451 smart00502 BBC B-Box C-termina 90.4 7 0.00015 37.2 13.2 21 661-681 76-96 (127)
452 PF08581 Tup_N: Tup N-terminal 90.4 4.1 8.9E-05 38.4 11.1 64 589-652 6-69 (79)
453 KOG4251 Calcium binding protei 90.4 0.21 4.6E-06 55.3 3.1 69 6-78 100-173 (362)
454 cd07627 BAR_Vps5p The Bin/Amph 90.3 30 0.00066 37.5 19.4 50 665-717 116-165 (216)
455 COG1730 GIM5 Predicted prefold 90.3 10 0.00022 39.5 14.9 45 663-710 93-137 (145)
456 KOG4807 F-actin binding protei 90.3 8.6 0.00019 45.4 15.8 56 629-684 421-476 (593)
457 PF10267 Tmemb_cc2: Predicted 90.3 10 0.00022 45.2 16.8 16 437-452 40-55 (395)
458 KOG4403 Cell surface glycoprot 90.2 4.2 9E-05 48.4 13.3 33 402-434 60-95 (575)
459 KOG4065 Uncharacterized conser 90.2 0.39 8.5E-06 48.2 4.5 58 10-67 70-143 (144)
460 TIGR00998 8a0101 efflux pump m 90.2 13 0.00028 41.9 17.2 10 587-596 87-96 (334)
461 PF03962 Mnd1: Mnd1 family; I 90.2 7.6 0.00016 41.7 14.5 38 581-618 63-100 (188)
462 COG5293 Predicted ATPase [Gene 90.2 15 0.00032 44.4 17.8 82 603-684 315-406 (591)
463 PF10212 TTKRSYEDQ: Predicted 90.2 4.3 9.4E-05 49.5 13.9 70 605-684 445-514 (518)
464 PF10212 TTKRSYEDQ: Predicted 90.1 5.4 0.00012 48.7 14.7 88 604-711 416-503 (518)
465 cd00632 Prefoldin_beta Prefold 90.1 7.4 0.00016 37.7 13.1 24 604-627 16-39 (105)
466 KOG0040 Ca2+-binding actin-bun 90.1 0.52 1.1E-05 62.0 6.6 62 6-67 2252-2322(2399)
467 PRK10476 multidrug resistance 90.1 7.7 0.00017 44.4 15.5 26 659-684 154-179 (346)
468 KOG2685 Cystoskeletal protein 90.1 12 0.00025 44.8 16.8 62 587-648 256-318 (421)
469 KOG4571 Activating transcripti 90.0 1 2.2E-05 51.1 8.1 53 662-717 239-291 (294)
470 PF04949 Transcrip_act: Transc 90.0 12 0.00026 39.2 15.0 73 641-716 82-155 (159)
471 PF06785 UPF0242: Uncharacteri 90.0 8.4 0.00018 44.8 15.2 41 663-706 133-173 (401)
472 PF07889 DUF1664: Protein of u 89.9 4.9 0.00011 41.0 12.0 35 608-642 68-102 (126)
473 smart00054 EFh EF-hand, calciu 89.9 0.34 7.4E-06 33.3 2.9 26 43-68 2-27 (29)
474 KOG3156 Uncharacterized membra 89.9 6 0.00013 43.4 13.4 77 582-661 64-141 (220)
475 PF05384 DegS: Sensor protein 89.8 27 0.00058 37.0 17.7 126 582-710 22-155 (159)
476 PF04871 Uso1_p115_C: Uso1 / p 89.8 8.2 0.00018 39.6 13.7 26 697-722 86-114 (136)
477 KOG4809 Rab6 GTPase-interactin 89.7 15 0.00033 45.1 17.7 73 589-665 333-409 (654)
478 smart00503 SynN Syntaxin N-ter 89.7 11 0.00024 36.0 14.0 17 604-620 18-34 (117)
479 KOG1850 Myosin-like coiled-coi 89.6 28 0.00061 40.5 18.8 36 665-703 117-152 (391)
480 PF05546 She9_MDM33: She9 / Md 89.6 6 0.00013 43.3 13.2 92 580-671 32-127 (207)
481 TIGR03752 conj_TIGR03752 integ 89.5 3.1 6.6E-05 50.2 11.9 15 702-716 130-144 (472)
482 TIGR02338 gimC_beta prefoldin, 89.5 3.6 7.9E-05 40.2 10.6 33 585-617 8-40 (110)
483 PF04740 LXG: LXG domain of WX 89.5 18 0.0004 38.2 16.6 22 692-713 142-163 (204)
484 PF02841 GBP_C: Guanylate-bind 89.4 10 0.00022 43.1 15.5 15 693-707 282-296 (297)
485 TIGR01069 mutS2 MutS2 family p 89.4 6.6 0.00014 50.3 15.5 21 662-682 570-590 (771)
486 cd07596 BAR_SNX The Bin/Amphip 89.4 21 0.00045 37.3 16.8 22 695-716 185-206 (218)
487 KOG2991 Splicing regulator [RN 89.3 6.8 0.00015 44.1 13.5 73 634-709 175-271 (330)
488 PRK05689 fliJ flagellar biosyn 89.3 27 0.00057 35.4 18.2 83 594-676 23-111 (147)
489 PF06785 UPF0242: Uncharacteri 89.3 6.8 0.00015 45.5 13.8 23 695-717 201-223 (401)
490 cd07653 F-BAR_CIP4-like The F- 89.3 24 0.00051 38.7 17.8 88 610-703 100-194 (251)
491 PF15254 CCDC14: Coiled-coil d 89.2 19 0.00041 45.9 18.5 31 686-716 520-550 (861)
492 PF15294 Leu_zip: Leucine zipp 89.2 4.8 0.0001 45.8 12.5 119 590-721 128-259 (278)
493 COG4477 EzrA Negative regulato 89.0 7.1 0.00015 47.8 14.4 54 653-709 378-431 (570)
494 PF01920 Prefoldin_2: Prefoldi 89.0 5.6 0.00012 37.6 11.2 73 646-718 1-92 (106)
495 KOG0982 Centrosomal protein Nu 89.0 22 0.00048 42.7 17.9 140 580-729 250-401 (502)
496 PF10158 LOH1CR12: Tumour supp 88.9 15 0.00033 37.6 14.8 104 611-736 27-130 (131)
497 PF13805 Pil1: Eisosome compon 88.9 32 0.0007 39.3 18.6 118 596-718 98-224 (271)
498 PF12329 TMF_DNA_bd: TATA elem 88.9 3.4 7.4E-05 38.2 9.3 73 584-663 2-74 (74)
499 PF09486 HrpB7: Bacterial type 88.9 30 0.00065 36.6 17.2 121 582-705 10-138 (158)
500 PF06810 Phage_GP20: Phage min 88.9 2.2 4.7E-05 44.5 9.0 87 639-725 2-92 (155)
No 1
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-47 Score=460.52 Aligned_cols=814 Identities=26% Similarity=0.322 Sum_probs=456.1
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 001211 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (1123)
Q Consensus 4 ~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G~eLs~~l 83 (1123)
.....|+.+|..+|..++|+|+|.+++.||..+||+..+|.+||.++|..+.|+|++.+||+||+||++||+|++++.+.
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred HhhhhcCCCCCCCCCCCcCCCCCccccccCCcccCCCCCCCCCCCCCCCcCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 001211 84 VKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQSIRPYQAAPHPTQG 163 (1123)
Q Consensus 84 L~~~~~g~~~~~iPpP~l~~~~~p~p~~~~~~~~~~~~~~~~~p~~~q~~~~~~~g~~~~~~~~~~~~rp~~~~~~~~~~ 163 (1123)
+ +++...+|+|++.....+.++...+ . + .+..+|....+.
T Consensus 88 ~-----~~~~~~pp~~~~~~~~~~~~~~~~~-~-s-----------------~~~~~p~~~~qe---------------- 127 (847)
T KOG0998|consen 88 V-----LPASAVPPPPKISHDTSPPSRPSSS-T-S-----------------AAPFVPAITPQE---------------- 127 (847)
T ss_pred c-----ccccCCCCCCccCccCCCcccCCCC-C-C-----------------CcccCCCCCHHH----------------
Confidence 5 3445677888777665555554321 0 0 111111111111
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccCCCCC
Q 001211 164 SVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGG 243 (1123)
Q Consensus 164 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~g 243 (1123)
+..++.++++ .. | .++.+.|.++++++++++|+.+|||
T Consensus 128 --------~aky~q~f~s-----------~~-----------------p-~~g~~sg~~~~pil~~s~Lp~~~l~----- 165 (847)
T KOG0998|consen 128 --------QAKYDQIFRS-----------LS-----------------P-SNGLLSGDKAKPILLNSKLPSDVLG----- 165 (847)
T ss_pred --------HHHHHHHHhc-----------cC-----------------C-CCCccccchhhhhhhcCCCChhhhc-----
Confidence 1122333321 01 1 1334567889999999999999998
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCccccccc---ccccCCCCCCCCCCCCCCCCCC
Q 001211 244 ASTGSRAISPSTPLMPTNPQTPVSSSSQLINNKSKALVPSGNGFASDSVFGGDVF---SAITTSPKQGPSSSAYSASTSP 320 (1123)
Q Consensus 244 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~gnG~~s~s~f~~d~f---sA~~~~~~q~p~~~~~~~~~~~ 320 (1123)
++| .+ .+.+.+|.++..+|..+|+ ....- ..+|++.-
T Consensus 166 ---~iw---------------------~l-------~d~d~~g~Ld~~ef~~am~l~~~~l~~--~~~p~P~~------- 205 (847)
T KOG0998|consen 166 ---RIW---------------------EL-------SDIDKDGNLDRDEFAVAMHLINDLLNG--NSEPVPSR------- 205 (847)
T ss_pred ---ccc---------------------cc-------ccccccCCCChhhhhhhhhHHHHHhhc--ccCCCCcc-------
Confidence 666 22 3788999999999999984 33330 01333222
Q ss_pred CCCCccCCCCCCCCCCCCC-Ccchh---------hhhcccCCCCCCCCccccCCCCCCCcccCCCCCCCCCcccCCCCCC
Q 001211 321 TSSANVPVSGAAQPSSKPY-PLNSL---------QSAFSMQPAGSQIPQNQLSLNPGQKISSQSSSFASAGISVGSGNST 390 (1123)
Q Consensus 321 ~ss~~~p~s~~~~p~~~~~-~~~~l---------qs~~~~~p~~~~~~~~q~~~~~~~~~s~~s~~~~~~g~~~g~~~~~ 390 (1123)
.+..+||.++..-.....+ .+..+ +..+.+.+...++. ..++. +- . ....
T Consensus 206 ~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~------------~~~s~----~~---~-~~~~ 265 (847)
T KOG0998|consen 206 LPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALN------------SNPSL----SS---L-SLAS 265 (847)
T ss_pred CCcccCCcchhcccccCcccccccccccccccccccccccccchhccc------------CCccc----cc---c-cccc
Confidence 2233344444332111111 01111 11111111111111 11111 11 1 1112
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHH
Q 001211 391 PDNSQVPW-PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (1123)
Q Consensus 391 s~~~~~~W-p~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhL 469 (1123)
+.+....| |+|++.++.+|.+||.++|++.+|+|++.+++++|+.+||+...|++||.|+|++++|+|+++|||++|||
T Consensus 266 ~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 266 SMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccccccccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 33556677 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hcCCCCCCCCCCCccccccccccCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCcc
Q 001211 470 MERY-REGRPLPAVLPRNVMFDETLLSMTSQPP-NAGYGNAAWGPGPGFGPQQVMRPQAMTPAGALRPPNLPTHPTADGA 547 (1123)
Q Consensus 470 I~~~-~~G~~LP~~LPpsLipps~~~~~~~qps-~~~y~l~s~q~~p~~qqQ~~~gs~~~~Pts~~~Pp~~~l~~~~~~~ 547 (1123)
+.++ .+|+.||.+||.+|+++..+. +..+. ...++ ++|........+..+....+.+....++.. .+....
T Consensus 346 ~~~~~~~g~~lP~vl~~s~~p~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----~~~~~~ 418 (847)
T KOG0998|consen 346 LEQKRAEGRSLPSVLPSSLIPSENRK--QTNPTTRASTA-ESPSSEQSSLAELKSLALSIASNPREKPRL----EQSSSE 418 (847)
T ss_pred hhhhhhcCCCCcccccccccCccccc--cCCcccccccc-ccCCcccccccccccccccccccccccccc----cccccc
Confidence 9999 689999999999999996432 11111 00011 122211100001101001000010001100 001111
Q ss_pred cccCCCCCCCCccchhhhccCCccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001211 548 RMLNQQKPRAPVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (1123)
Q Consensus 548 t~~~~~~ss~P~ld~~l~~dld~ee~~sL~~~qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~ 627 (1123)
....++....+++ ++.+.|..++....+......+...++.++.+++++.+++...++++++++..++++|..+|+.+
T Consensus 419 ~~~~~~~~~s~~~--~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~ 496 (847)
T KOG0998|consen 419 APRTTPVKTSPVL--ELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLL 496 (847)
T ss_pred ccccCcccccccc--cchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhc
Confidence 1111111122222 22344554444444433334445577899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q 001211 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (1123)
Q Consensus 628 ~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL 707 (1123)
..++...+++++++.++|++..+|+..|+..|...+.++..++.+|..|..++...+ ..-+.|..+........++|
T Consensus 497 ~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~---s~~~~l~~~~~~~~~~~~~~ 573 (847)
T KOG0998|consen 497 PLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTR---SKSTLLDDSFKVGMELFEQL 573 (847)
T ss_pred ccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhc---ccchhhhhhhhhhhhhhhhh
Confidence 999998999999999555555555544444444444443333333333333333333 44444444444443333333
Q ss_pred HHHHHHHHHHhCcccccceeeecCCCcCCCcccccccchhhhhhccccCCCccccccccCCCCCCCCCCccccCCCC-CC
Q 001211 708 LKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDAGFGNEITFDVKNASASPNTNSSVQMENTS-PD 786 (1123)
Q Consensus 708 ~kqL~E~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~wd~~~d~~f~~~~t~~~~~~~~~~~~~~~~~~~~~~-~~ 786 (1123)
.+.....|.+.+ .-.+.+.+..-||+.| . .|-.+.|+....... .++...+ .|
T Consensus 574 ~~~~k~~n~~~~--~s~~~l~~~~e~~~~~--------~-~~~~~~d~~~~~k~~---------------~~~~~~~~~~ 627 (847)
T KOG0998|consen 574 LKGSKLVNGKDQ--NSSTELAGYLEGTING--------K-GLETSMDDSKEQKNE---------------DDKKSELSTD 627 (847)
T ss_pred hhhhhccccccc--cchhhhhhhccccccc--------c-cccccccchhhcccc---------------cccccccccC
Confidence 333333333333 1222233333344433 0 222222222220000 0011111 12
Q ss_pred CCCCCCCCcchhHh-hhhhhccccccccCCccccCCccccccCCCCCCCCCCCCCCCCCCccccccCCccccccccccCC
Q 001211 787 GSPSADNFANVDER-QRELMNAGERAFESESAYTHSEDESARSPHDSPAGKAAPESPSQNFSDVFRSSEADAETHRSFDD 865 (1123)
Q Consensus 787 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~s~~~~~~~~s~~~~~~~~~~~~~~d~~~~~~~d~ 865 (1123)
........++++.. +.+. |..........+...|+++-... ++.+|. ..+.+||.
T Consensus 628 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~t~~~~p~~~~~~~-~~~~~~----------~ss~f~~~ 683 (847)
T KOG0998|consen 628 PEENPDSYSSVPSASRGDP-------------FAGDKNKEETTSSSDPFGGDPVK-ESPKFE----------SSSEFFDA 683 (847)
T ss_pred cccCCcccccccccccCCc-------------cccCchhhhcccccCCccccccc-cCCCcc----------cccccccc
Confidence 11122222222211 1011 11111122234444677766555 555553 23567888
Q ss_pred CCCCCCCCCCCcccccCCcccccCCCccccccCCCCCCCCCCcCCCCCCCCCcccCCCCCCCcccccCCccccCCCCCCc
Q 001211 866 STWGAFDNDDTDSVWGFNTKIYFSPMFDAIFQGSNSDKNRDFFGSSNFGGSPIRTESPTADSTFHKKSPFRFDDSVPSTP 945 (1123)
Q Consensus 866 ~~wg~fd~~d~ds~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~p~r~~s~~~~~~~~~~~~f~f~~svp~tp 945 (1123)
.+|-.++... +..|..+..... +.+. +..+..|+..+ ..++.....|+....|.+...|
T Consensus 684 ~~~~~~~~~~-~~~~~~~~~~~~-------~~~~-~~~~~p~~p~~--------~~~t~~~~~~~~~~~~~~~~~~---- 742 (847)
T KOG0998|consen 684 GTPFDKFTSP-DPFPTQSASSPS-------PLEP-FASSDPFPPSS--------ASPTSPSDPFQPVPSFPPQPFV---- 742 (847)
T ss_pred CCccccccCC-CCcccCCCCCCC-------CCcc-cCCCCCCCCCC--------CCCCCcccccccccccCccccC----
Confidence 8887555444 788887744422 1111 11233333322 2222222223332223222222
Q ss_pred ccCCCCCCCCCCcccCCccCccccccccccCCCCCCCCCccccc--ccccccCCCCCCCCCCcccccccccCCCCCCCCC
Q 001211 946 LSRFGNSPPRYSEASSDHFDSFSRFDSFNVHDSGFSSHPERLTR--FDSMNSTNDFGPFSSQPEKVSRFDSMNSSKDFGP 1023 (1123)
Q Consensus 946 ~~~~~~s~p~~~~~~~~~~~~~srfdsf~~~~~~~~~~~~~~sr--fds~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1123)
.+|..|++|-+=.-.+ -+ ++.++= +++.-.+.+ .+...+..++||+. .++ ++
T Consensus 743 ----------------~~~~d~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~-~~ 796 (847)
T KOG0998|consen 743 ----------------PEFADFSEFSSANNSE--LF--RDSTSASFEESVIKSEA---TTPADNSDSDGDSV--PQD-PG 796 (847)
T ss_pred ----------------CCCcccccccccCCcc--cc--ccccccccccccccccc---CCcccCcCCCCCCc--cCC-CC
Confidence 1122233332211100 11 011110 222222222 23356777777777 555 32
Q ss_pred CCCCCCcccccccCccCCCCCCCCcccccccccccccccccCCCCcccccccccc
Q 001211 1024 FSSQPEKFSRFDSMSSTSDFGHFSSQTEKFSRFDSMNSARDFGGDKLSRFDSMSS 1078 (1123)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1123)
...++||++.|+..+.. .++|.+|++.||. |+.+-.+.|+++|.+
T Consensus 797 -----~~~s~~~~~~s~~~~~~----~~~f~~~~~~~s~-~~~~~~~~~~~~~~~ 841 (847)
T KOG0998|consen 797 -----GSASAFDSLSSTATPSL----ADKFSPFSSFNSS-DDSSPSLFLPPFSSS 841 (847)
T ss_pred -----cccchhccccccCCccc----cccccccccccCC-cccccccccCccccC
Confidence 66788888888888774 4588888888888 888888888888876
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-38 Score=365.47 Aligned_cols=99 Identities=34% Similarity=0.611 Sum_probs=95.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 393 NSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 393 ~~~~~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
+-...| .|....|.+|+++|+.+|+.+.|+|||.++|.+|.+|+||..+|++||.|+|+|+||+|+.+||++|||||+.
T Consensus 182 ~q~~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 182 NQLEEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred hhhhhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHH
Confidence 445589 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCcccccc
Q 001211 473 YREGRPLPAVLPRNVMFDET 492 (1123)
Q Consensus 473 ~~~G~~LP~~LPpsLipps~ 492 (1123)
++.|.+||.+||+.|+|++-
T Consensus 261 a~sGq~lP~tlP~E~Vpp~~ 280 (1118)
T KOG1029|consen 261 AKSGQPLPKTLPPELVPPSF 280 (1118)
T ss_pred HhcCCCCCCCCChhhcCccc
Confidence 99999999999999999974
No 3
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.90 E-value=4.9e-24 Score=203.04 Aligned_cols=94 Identities=43% Similarity=0.844 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHhc--C
Q 001211 399 PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE--G 476 (1123)
Q Consensus 399 p~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~~--G 476 (1123)
|.|+++|+++|+++|..+|. .+|+|+|++++++|+++||+.++|++||+|+|+|+||+|+++|||||||||+++++ |
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 67999999999999999994 78999999999999999999999999999999999999999999999999999875 5
Q ss_pred CCCCCCCCCCccccccc
Q 001211 477 RPLPAVLPRNVMFDETL 493 (1123)
Q Consensus 477 ~~LP~~LPpsLipps~~ 493 (1123)
.+||.+||+.|+|++++
T Consensus 81 ~~lP~~LP~~L~p~s~~ 97 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPSKR 97 (104)
T ss_dssp S---SSSSGGGSSSCG-
T ss_pred CCCchhcCHHHCCCCcc
Confidence 69999999999999865
No 4
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.4e-20 Score=229.04 Aligned_cols=362 Identities=18% Similarity=0.258 Sum_probs=245.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001211 395 QVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1123)
Q Consensus 395 ~~~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~ 474 (1123)
..-| .|++.|+.+|..+|..+.+ ..|+++|+.++.+|++++|+...|.+||+|+|+|.+|.|++.||++|||||++++
T Consensus 118 ~~~p-~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 118 PFVP-AITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred ccCC-CCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 3468 7999999999999999996 5999999999999999999999999999999999999999999999999999999
Q ss_pred c--CCCCCCCCCCCccccccccccCCC-----CC----C---------CC----------------------CCCCCCCC
Q 001211 475 E--GRPLPAVLPRNVMFDETLLSMTSQ-----PP----N---------AG----------------------YGNAAWGP 512 (1123)
Q Consensus 475 ~--G~~LP~~LPpsLipps~~~~~~~q-----ps----~---------~~----------------------y~l~s~q~ 512 (1123)
+ -.++|..||+.||++++....... +. + .. +....|.
T Consensus 196 ~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~- 274 (847)
T KOG0998|consen 196 NGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWS- 274 (847)
T ss_pred hcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccC-
Confidence 9 589999999999999765211110 10 0 00 0001110
Q ss_pred CCCCCC-----------C-----CC--CC--CC-CcCCCCCCCCCCC---------------------CCCC--C--CCc
Q 001211 513 GPGFGP-----------Q-----QV--MR--PQ-AMTPAGALRPPNL---------------------PTHP--T--ADG 546 (1123)
Q Consensus 513 ~p~~qq-----------Q-----~~--~g--s~-~~~Pts~~~Pp~~---------------------~l~~--~--~~~ 546 (1123)
+-+.+ | .+ .+ .+ .+++....++.+. .++. . ..+
T Consensus 275 -~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~g 353 (847)
T KOG0998|consen 275 -PKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRAEG 353 (847)
T ss_pred -cccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhhhcC
Confidence 00000 0 00 00 00 0011000000000 0000 0 000
Q ss_pred ccccC---------------CCCCC-----CCc---cch-------hhhccCCcccc----ccccccchhhhhhhhHHHH
Q 001211 547 ARMLN---------------QQKPR-----APV---LDD-------NLANQLDNGEY----SADSKLQDSTTAGKKVDER 592 (1123)
Q Consensus 547 ~t~~~---------------~~~ss-----~P~---ld~-------~l~~dld~ee~----~sL~~~qEatdL~keLAnL 592 (1123)
..-+. .+... .+. .+. .-+..+..++. ..+.....+..+..++.++
T Consensus 354 ~~lP~vl~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~ 433 (847)
T KOG0998|consen 354 RSLPSVLPSSLIPSENRKQTNPTTRASTAESPSSEQSSLAELKSLALSIASNPREKPRLEQSSSEAPRTTPVKTSPVLEL 433 (847)
T ss_pred CCCcccccccccCccccccCCccccccccccCCccccccccccccccccccccccccccccccccccccCcccccccccc
Confidence 00000 00000 000 000 00011111111 1111111111222444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 593 EKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQER 672 (1123)
Q Consensus 593 enQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~E 672 (1123)
.+++ ..+.++.++|...+.....+++++..+++..+..+...|.+++++...+.++-..++.++..+.....+
T Consensus 434 ~~~l-------~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~e 506 (847)
T KOG0998|consen 434 ANEL-------SNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNRE 506 (847)
T ss_pred hhhh-------hhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhh
Confidence 5555 777788888888888777889999999988899999999999999999999988888887777777777
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCCcCCCcccccccchhhhhhc
Q 001211 673 KMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKF 752 (1123)
Q Consensus 673 L~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~wd~~ 752 (1123)
+..|+.+|..++ ++...|...+..+..++++|++.|+..|..+.+..+-..+.++.|.|+..++|....|.++|++.
T Consensus 507 i~~~~~~ln~~~---qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~ 583 (847)
T KOG0998|consen 507 ISSLEKELNELQ---QQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGK 583 (847)
T ss_pred HHHHHHHHhhhH---HHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccc
Confidence 777777777777 44467777777788889999999999999999999999999999999999999999999999998
Q ss_pred cccCCCccccccccCCCCC
Q 001211 753 EDAGFGNEITFDVKNASAS 771 (1123)
Q Consensus 753 ~d~~f~~~~t~~~~~~~~~ 771 (1123)
.+ -..+++.-.+++.+..
T Consensus 584 ~~-~s~~~l~~~~e~~~~~ 601 (847)
T KOG0998|consen 584 DQ-NSSTELAGYLEGTING 601 (847)
T ss_pred cc-cchhhhhhhccccccc
Confidence 77 4447787777777664
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.5e-19 Score=209.60 Aligned_cols=94 Identities=38% Similarity=0.663 Sum_probs=89.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001211 395 QVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1123)
Q Consensus 395 ~~~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~ 474 (1123)
...| .||++|+++|+..|.+|- .+.|+|+|+++|+||++||||..+|++||.|+|.|+||++|..||.|||+||..|+
T Consensus 5 ~n~W-avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 5 TNPW-AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CCcc-ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 3479 999999999999999997 58999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccc
Q 001211 475 EGRPLPAVLPRNVMFD 490 (1123)
Q Consensus 475 ~G~~LP~~LPpsLipp 490 (1123)
.|++||..|||+|+-.
T Consensus 83 qG~~lP~~LPPsll~~ 98 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLLKQ 98 (1118)
T ss_pred cCCcCCCCCChHHhcc
Confidence 9999999999987654
No 6
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=6.4e-19 Score=199.29 Aligned_cols=101 Identities=36% Similarity=0.689 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 001211 389 STPDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1123)
Q Consensus 389 ~~s~~~~~~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMh 468 (1123)
..++....+| .||+|+|++|.+.|..+..|-.|+|+|..+++||.|++||-++|.+||.|+|.|+||.|++.|||.|||
T Consensus 214 dnsS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 214 DNSSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred ccccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3455678899 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCcccc
Q 001211 469 LMERYREGRPLPAVLPRNVMFD 490 (1123)
Q Consensus 469 LI~~~~~G~~LP~~LPpsLipp 490 (1123)
||-.+++|++||..||.+|.|-
T Consensus 293 LVVaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 293 LVVARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred heeecccCCCCCCCCccccChh
Confidence 9999999999999999999987
No 7
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.71 E-value=9.6e-18 Score=160.14 Aligned_cols=83 Identities=33% Similarity=0.556 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC--CCCCH
Q 001211 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK--RELTP 81 (1123)
Q Consensus 4 ~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G--~eLs~ 81 (1123)
.+++.|+.+|+.+|. ++|+|+|++|+.||.+||||.++|++||+|+|.++||+|+++||++|||||.++++| .+|+.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~lP~ 85 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGKPLPS 85 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS---S
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCCch
Confidence 578899999999996 689999999999999999999999999999999999999999999999999998876 47754
Q ss_pred HHHhhh
Q 001211 82 DIVKAA 87 (1123)
Q Consensus 82 ~lL~~~ 87 (1123)
++.+.+
T Consensus 86 ~LP~~L 91 (104)
T PF12763_consen 86 SLPPSL 91 (104)
T ss_dssp SSSGGG
T ss_pred hcCHHH
Confidence 444443
No 8
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.67 E-value=2.9e-16 Score=145.93 Aligned_cols=95 Identities=35% Similarity=0.724 Sum_probs=92.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYREG 476 (1123)
Q Consensus 397 ~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~~G 476 (1123)
+| +|+++++.+|..+|..+|++++|+|+.++++.+|...+++.+.+.+||.++|.+++|.|+++||+.+|+++.+++.|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 69 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccc
Q 001211 477 RPLPAVLPRNVMFDET 492 (1123)
Q Consensus 477 ~~LP~~LPpsLipps~ 492 (1123)
++||..||+.|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~ 95 (96)
T smart00027 80 YPIPASLPPSLIPPSK 95 (96)
T ss_pred CCCCccCCHhhcCCCc
Confidence 9999999999999843
No 9
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=99.63 E-value=1.9e-15 Score=157.54 Aligned_cols=173 Identities=13% Similarity=0.185 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCcCCCCCCCC--
Q 001211 459 SLREFCFALYLMERYREGRPLPAVLPRNVMFDETLLSMTSQPPNAGYGNAA-WGPGPGFGPQQVMRPQAMTPAGALRP-- 535 (1123)
Q Consensus 459 dkdEF~IAMhLI~~~~~G~~LP~~LPpsLipps~~~~~~~qps~~~y~l~s-~q~~p~~qqQ~~~gs~~~~Pts~~~P-- 535 (1123)
|+|.+++++|+++++.+|+.||..||++|..+ | .+.+|. |++.. .+ ..+.++... .+++-+.
T Consensus 1 dKD~~L~FLHiLnqR~~G~rIPr~vPasLras---f-~k~~i~---Ydl~~~~~--s~~~~~~~~------~t~t~~k~~ 65 (195)
T PF12761_consen 1 DKDQCLYFLHILNQRNDGYRIPREVPASLRAS---F-EKEQID---YDLNSSPQ--SRWKPSSST------STSTGRKAK 65 (195)
T ss_pred CCcchhhHHHHHhccccCCcCCccCCHHHHHH---H-hcCCcC---ccccchhh--cccccCCCC------CCcchhhhh
Confidence 57889999999999999999999999999998 7 777877 99874 12 111111000 1100000
Q ss_pred CCCC----C-CC---CCCcccccCCCCCCCCccchhhhccCCccccccccccchhhhhhhhHHHHHHHHHHHHHH-----
Q 001211 536 PNLP----T-HP---TADGARMLNQQKPRAPVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREK----- 602 (1123)
Q Consensus 536 p~~~----l-~~---~~~~~t~~~~~~ss~P~ld~~l~~dld~ee~~sL~~~qEatdL~keLAnLenQied~~Ek----- 602 (1123)
+-.. + +. ....++ .++.+. +.+ ||.+.|.++|++|+.+++++.++
T Consensus 66 f~~~yl~rlG~~~~s~~~~gT-----dfS~~~-------~~d----------wEevrLkrELa~Le~~l~~~~~~~~~~~ 123 (195)
T PF12761_consen 66 FGDSYLSRLGRGGKSYKEKGT-----DFSATE-------GTD----------WEEVRLKRELAELEEKLSKVEQAAESRR 123 (195)
T ss_pred hhHHHHHHhccccCCCCCCCC-----CCCCCC-------CCc----------hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0000 0 00 000001 122211 222 99999999999999999986643
Q ss_pred ------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 ------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (1123)
Q Consensus 603 ------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~EL 676 (1123)
.+.++.|+++|+.||.+. |+++.+.......+|..|+ .+|+.||+||.+||.+|+.++++|++|
T Consensus 124 ~~~~~~~~lvk~e~EqLL~YK~~q---l~~~~~~~~~~~~~l~~v~-------~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 124 SDTDSKPALVKREFEQLLDYKERQ---LRELEEGRSKSGKNLKSVR-------EDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHH---HHhhhccCCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999999988 6666544445688999999 999999999999999999999999999
Q ss_pred HH
Q 001211 677 HQ 678 (1123)
Q Consensus 677 eq 678 (1123)
++
T Consensus 194 ~q 195 (195)
T PF12761_consen 194 RQ 195 (195)
T ss_pred cC
Confidence 74
No 10
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.1e-14 Score=158.03 Aligned_cols=100 Identities=28% Similarity=0.575 Sum_probs=93.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 391 PDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 391 s~~~~~~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
-+..+.+| ++ ..||..|++||..+. .-+|+|+|..++.-+.+++||..+|.+||.|+|+|+||+|+-+||++|-|||
T Consensus 430 eg~d~~ew-vv-~~dk~~yde~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli 506 (532)
T KOG1954|consen 430 EGADEAEW-VV-SKDKPTYDEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLI 506 (532)
T ss_pred cCCcccce-ee-ecCCcchHhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHH
Confidence 34678899 44 568899999999998 4799999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCccccccc
Q 001211 471 ERYREGRPLPAVLPRNVMFDETL 493 (1123)
Q Consensus 471 ~~~~~G~~LP~~LPpsLipps~~ 493 (1123)
+.+++|+.||+.||+.|+||+++
T Consensus 507 ~~kleghelp~~lp~hl~pps~r 529 (532)
T KOG1954|consen 507 KLKLEGHELPSELPKHLVPPSKR 529 (532)
T ss_pred heecccccCccccCcccCCcccc
Confidence 99999999999999999999764
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=3.1e-11 Score=112.37 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 001211 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (1123)
Q Consensus 4 ~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G~eLs~~l 83 (1123)
.+...|+++|..+|.|++|+|+..+++.+|...|++..++.+||.++|.+++|+|+++||+.+|++|+..+.|++|++++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~ 86 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASL 86 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhhh
Q 001211 84 VKAA 87 (1123)
Q Consensus 84 L~~~ 87 (1123)
..++
T Consensus 87 ~~~~ 90 (96)
T smart00027 87 PPSL 90 (96)
T ss_pred CHhh
Confidence 7775
No 12
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.1e-12 Score=143.59 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=77.6
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 001211 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (1123)
Q Consensus 4 ~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G~eLs~~l 83 (1123)
.+++||..-|+.+..|-.|.|+|..|+.||.+|.||-.+|..||+|+|.|+||-|+..|||.|||||-+.++|++|+ +.
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLP-e~ 306 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLP-ES 306 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCC-CC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999996 44
Q ss_pred Hhhh
Q 001211 84 VKAA 87 (1123)
Q Consensus 84 L~~~ 87 (1123)
|...
T Consensus 307 LP~~ 310 (737)
T KOG1955|consen 307 LPHC 310 (737)
T ss_pred Cccc
Confidence 4443
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.02 E-value=9.7e-10 Score=93.77 Aligned_cols=67 Identities=45% Similarity=0.735 Sum_probs=64.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhc
Q 001211 9 FESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (1123)
Q Consensus 9 Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~ 75 (1123)
|+++|..+|.|++|+|+.+|++.+|...|++...+.+||..+|.+++|+|+++||+.+|++|.++|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999999874
No 14
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.4e-10 Score=126.38 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=79.1
Q ss_pred CccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHH
Q 001211 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPD 82 (1123)
Q Consensus 3 ~~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G~eLs~~ 82 (1123)
++++..|+++|..+-+ -+|+|+|..|+..+.+|.||+.+|.+||.|+|+|+||+||-+||..|-|||.+...|.+|+.+
T Consensus 440 ~~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghelp~~ 518 (532)
T KOG1954|consen 440 SKDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHELPSE 518 (532)
T ss_pred ecCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccCccc
Confidence 4678899999999987 589999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhhh
Q 001211 83 IVKAA 87 (1123)
Q Consensus 83 lL~~~ 87 (1123)
+.+++
T Consensus 519 lp~hl 523 (532)
T KOG1954|consen 519 LPKHL 523 (532)
T ss_pred cCccc
Confidence 77775
No 15
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.96 E-value=2.3e-09 Score=91.43 Aligned_cols=67 Identities=40% Similarity=0.707 Sum_probs=64.2
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001211 409 YSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (1123)
Q Consensus 409 Y~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~~ 475 (1123)
|+++|..+|++++|+|+.+|++.+|.+.|++.+.+.+||..+|.+++|.|+++||+.+|+++.++++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999998864
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.87 E-value=3.7e-08 Score=108.91 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=113.4
Q ss_pred hhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 583 TTAGKKVDEREKVILDSREK-----IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1123)
Q Consensus 583 tdL~keLAnLenQied~~Ek-----~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEs 657 (1123)
.+|...|.+++.+|+.+..+ ..+|+.|+++|.....+....+..+++++..+++.|++|+.+++....+.+.|+.
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 35667788999999875533 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeee
Q 001211 658 KLTIEDAK----FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIE 729 (1123)
Q Consensus 658 QLavlEa~----LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ie 729 (1123)
+|..+|.. +...+..+..|+.+|.+++ .+|..++.||+.+|+||+.|+.+|+
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~--------------------~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELR--------------------EEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHH--------------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99888765 6667888899999999999 9999999999999999999999986
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.64 E-value=6.4e-08 Score=83.36 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCC------CHHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001211 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNL------PKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 8 ~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGL------P~~~LaqIW~LAD~d~DG~Ldr~EF~vAM 67 (1123)
.++++|+.+|.|++|+|+..|++.++...+. ....+..||..+|.++||+|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999874 33566777999999999999999999986
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.61 E-value=8.7e-08 Score=82.55 Aligned_cols=60 Identities=27% Similarity=0.425 Sum_probs=53.5
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHhcCC------CHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 001211 408 KYSKVFMEVDTDRDGRITGEQARNLFMSWRL------PREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1123)
Q Consensus 408 kY~~IF~slDkD~DG~ISG~Ear~~F~kSgL------P~e~L~qIW~LADiDnDG~LdkdEF~IAM 467 (1123)
+++++|..+|+|++|+|+.+|++.++...+. ..+.+..||..+|.|+||.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5889999999999999999999999998753 33566677999999999999999999887
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.41 E-value=8.2e-07 Score=83.31 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-CC--CCH-HHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCC
Q 001211 6 QDQFESFFRRADL-DGDGRISGAEAVAFFQG-SN--LPK-QVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKR 77 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~-DgDGrISG~Ea~~ff~~-SG--LP~-~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G~ 77 (1123)
...++.+|+.+|. +++|+|+.+|++.+|.. .| |.. .++..|...+|.|+||.|+++||+..|.-++.+..+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~~ 83 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKGE 83 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4568999999999 99999999999999998 54 777 9999999999999999999999999999999988763
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.32 E-value=1.9e-06 Score=80.86 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhCC-CCCCccCHHHHHHHHHh-cC--CCH-HHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001211 406 IQKYSKVFMEVDT-DRDGRITGEQARNLFMS-WR--LPR-EVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1123)
Q Consensus 406 k~kY~~IF~slDk-D~DG~ISG~Ear~~F~k-Sg--LP~-e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~ 474 (1123)
...+..+|..+|+ +++|+|+..|++.+|.+ .+ |.. +++..|..-+|.|+||+|+++||+.+|.-+..+-
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4568999999999 99999999999999997 64 777 9999999999999999999999988887655443
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.29 E-value=3e-06 Score=79.11 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----CC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG-----SN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 6 ~~~Ye~vF~~lD-~DgDG-rISG~Ea~~ff~~-----SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
...+.++|+.+| .|+|| +|+..|++.+|+. .| ..+.++..+++.+|.|++|.|+++||+..|.-++.+.++
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~~ 86 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACHE 86 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 456899999998 79999 6999999999998 55 678889999999999999999999999999999888765
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.27 E-value=2.4e-06 Score=79.30 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-C------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG-S------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 6 ~~~Ye~vF~~lD-~DgDG-rISG~Ea~~ff~~-S------GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
...++++|..+| .|++| +|+..|++.+|.. . ..+...+.+|+..+|.+++|.|+++||+..|..++.|.++
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 357899999997 99999 5999999999975 3 2478999999999999999999999999999999999876
Q ss_pred C
Q 001211 77 R 77 (1123)
Q Consensus 77 ~ 77 (1123)
.
T Consensus 88 ~ 88 (92)
T cd05025 88 F 88 (92)
T ss_pred H
Confidence 4
No 23
>PTZ00183 centrin; Provisional
Probab=98.18 E-value=7.9e-06 Score=80.14 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 400 ~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSg--LP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
.+++.+..++..+|..+|.+++|+|+..+++.+|...| +....+..||.++|.+++|.|+++||+.+++.+
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 67899999999999999999999999999999998754 788999999999999999999999999988754
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.15 E-value=8.9e-06 Score=75.87 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-------CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhc
Q 001211 6 QDQFESFFRRADL-DG-DGRISGAEAVAFFQG-------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~-Dg-DGrISG~Ea~~ff~~-------SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~ 75 (1123)
...+..+|..+|. |+ +|+|+..|++.+|.. ..++...+..|++.+|.+++|.|+++||+.+|.-++++-.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~ 85 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACE 85 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4568899999997 97 699999999999975 2568899999999999999999999999999988887754
No 25
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.14 E-value=9.8e-06 Score=76.03 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh------C-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG------S-NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 6 ~~~Ye~vF~~lD-~DgDG-rISG~Ea~~ff~~------S-GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
...+.++|..+| .|+|| +|+..|++.+|.. . ......+.+|.+.+|.|+||.|+++||+..|.-++.|...
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~~ 88 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACND 88 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788999999 78998 5999999999976 2 3577899999999999999999999999999988877653
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.13 E-value=1.2e-05 Score=75.07 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh-----cC--CCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 406 IQKYSKVFMEVD-TDRDG-RITGEQARNLFMS-----WR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 406 k~kY~~IF~slD-kD~DG-~ISG~Ear~~F~k-----Sg--LP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
...+.++|..+| +|++| +|+.++++.+|.. .| .+.+++..++..+|.|+||+|+++||+..|.-+..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 456899999998 79999 5999999999998 54 67888999999999999999999999877765543
No 27
>PTZ00184 calmodulin; Provisional
Probab=98.11 E-value=1.2e-05 Score=77.55 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 400 ~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
.++.+++.++..+|..+|.+++|.|+..+++.++... .+..+.+.+||+++|.+++|.|+++||+.+|+.+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4678899999999999999999999999999998765 4678899999999999999999999999888764
No 28
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.11 E-value=1.6e-05 Score=72.80 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhCC--CCCCccCHHHHHHHHHh-cC--C----CHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 403 PSDIQKYSKVFMEVDT--DRDGRITGEQARNLFMS-WR--L----PREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 403 peDk~kY~~IF~slDk--D~DG~ISG~Ear~~F~k-Sg--L----P~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
+++...+..+|..+|+ +++|+|+.++++.+|.. .+ + ....+..||...|.+++|.|+++||+.+|.-+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4677889999999999 89999999999999975 33 3 48999999999999999999999998876644
No 29
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.10 E-value=7.7e-06 Score=82.12 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~L 69 (1123)
...++++|+.+|.|++|+|+.+|++.+|...| +....+..+++.+|.|+||+++++||+..|..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 45899999999999999999999999999986 78889999999999999999999999998863
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.07 E-value=1.3e-05 Score=74.49 Aligned_cols=67 Identities=12% Similarity=0.272 Sum_probs=58.5
Q ss_pred HHHHHHHHhhC-CCCCCc-cCHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHH
Q 001211 407 QKYSKVFMEVD-TDRDGR-ITGEQARNLFMS-W------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (1123)
Q Consensus 407 ~kY~~IF~slD-kD~DG~-ISG~Ear~~F~k-S------gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~ 473 (1123)
..+.++|..+| ++++|+ |+..+++.+|.. . .++.+.+.+|+..+|.+++|.|+++||+.+|..+..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 56899999997 999995 999999999975 3 2478999999999999999999999999888866444
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.05 E-value=1.9e-05 Score=73.71 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCC-CC-CCccCHHHHHHHHHh-----c--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 406 IQKYSKVFMEVDT-DR-DGRITGEQARNLFMS-----W--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 406 k~kY~~IF~slDk-D~-DG~ISG~Ear~~F~k-----S--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
...+..+|..+|. |+ +|+|+.+|++.+|.. . +++.+.+..|++.+|.+++|.|+++||+.+|.-+..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4678999999997 87 699999999999875 2 568899999999999999999999999977765443
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.05 E-value=2.4e-05 Score=73.12 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=59.0
Q ss_pred CHHHHH--HHHHHHHhhCC-CC-CCccCHHHHHHHHHh---c--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 402 KPSDIQ--KYSKVFMEVDT-DR-DGRITGEQARNLFMS---W--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 402 SpeDk~--kY~~IF~slDk-D~-DG~ISG~Ear~~F~k---S--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
|+-|++ ..-.+|.++|. ++ +|+|+.+|++.+|.+ . .++.+++.+|++-+|.|++|+|+++||+..|.-+.+
T Consensus 3 ~~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 3 SPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 444443 47789999997 67 899999999999963 2 589999999999999999999999999877765543
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.05 E-value=1.9e-05 Score=74.07 Aligned_cols=71 Identities=27% Similarity=0.370 Sum_probs=62.9
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhC-------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 6 QDQFESFFRR-ADLDGDG-RISGAEAVAFFQGS-------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 6 ~~~Ye~vF~~-lD~DgDG-rISG~Ea~~ff~~S-------GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
......+|.. +|.|++| .|+..|++.+|..- ...+.++.+||..+|.|+||.|+++||+..|.-++.+.+.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~~~ 87 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVACHE 87 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHHHh
Confidence 4567889999 8888987 99999999999885 5778999999999999999999999999999988877653
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.05 E-value=1.5e-05 Score=74.39 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHH
Q 001211 7 DQFESFFRRADL-DG-DGRISGAEAVAFFQG-----SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (1123)
Q Consensus 7 ~~Ye~vF~~lD~-Dg-DGrISG~Ea~~ff~~-----SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValA 73 (1123)
...-++|+++|. |+ +|+|+.+|++.+|.+ -.++.+++.+|++.+|.|++|.|+++||+..|.-++.|
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 346689999998 67 899999999999963 34899999999999999999999999999988888776
No 35
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=82.76 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001211 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1123)
Q Consensus 4 ~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~ 68 (1123)
...+.++..|+.+|.|+||+|+..|++.+++.-| ++++++..+.+.+|.|+||+|++++|+.++.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 3577899999999999999999999999999875 9999999999999999999999999998764
No 36
>PRK09039 hypothetical protein; Validated
Probab=98.02 E-value=0.00019 Score=82.11 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (1123)
Q Consensus 633 elkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeq 678 (1123)
.+..+|..++.+|.+...+|..|++||+.++..|..++.+|..+++
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333333333333
No 37
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.99 E-value=2.6e-05 Score=78.29 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001211 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (1123)
Q Consensus 401 ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSg--LP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~~ 475 (1123)
++.++...|.++|..+|++++|+|+..++..+|+..| .....|..|.+-+|.+++|.|+++||+..|........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 5778899999999999999999999999999999875 56999999999999999999999999998886655443
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.98 E-value=3.5e-05 Score=72.38 Aligned_cols=66 Identities=11% Similarity=0.258 Sum_probs=56.4
Q ss_pred HHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh------c-CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 407 QKYSKVFMEVD-TDRDG-RITGEQARNLFMS------W-RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 407 ~kY~~IF~slD-kD~DG-~ISG~Ear~~F~k------S-gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
..+.++|..+| +|++| +|+..|++.+|.+ . ......|.+|.+.+|.|+||.|+++||+.+|.-+..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 45888999999 78998 5999999999965 1 357789999999999999999999999988764433
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.97 E-value=3.3e-05 Score=70.70 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-CC--C----CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADL--DGDGRISGAEAVAFFQG-SN--L----PKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTV 72 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~--DgDGrISG~Ea~~ff~~-SG--L----P~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LVal 72 (1123)
+...++++|..+|. |++|+|+..|++.+|.. .| + ....+.+||..+|.+++|.|+++||+..|.-++.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 45678899999999 89999999999999975 33 3 3899999999999999999999999988876643
No 40
>PTZ00183 centrin; Provisional
Probab=97.94 E-value=2.5e-05 Score=76.59 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LV 70 (1123)
+...+..+|..+|.|++|+|+..|+..+|...| +....+..||..+|.+++|.|++.||+.++..+
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 456789999999999999999999999999866 688899999999999999999999999987754
No 41
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.93 E-value=4.7e-05 Score=71.41 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHHHHHHh-hCCCCCC-ccCHHHHHHHHHhc-------CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 406 IQKYSKVFME-VDTDRDG-RITGEQARNLFMSW-------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 406 k~kY~~IF~s-lDkD~DG-~ISG~Ear~~F~kS-------gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
......+|.+ .|++++| +|+.+|++.+|.+- ++....+.+||..+|.|+||.|+++||+..|.-+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4568899999 7788876 99999999999863 577899999999999999999999999987765544
No 42
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.92 E-value=2.4e-05 Score=80.85 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 001211 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1123)
Q Consensus 404 eDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMh 468 (1123)
..+.++...|..+|+|+||+|+..+++.++... .++.+.++.+.+++|.|+||+|++++|+-+|.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 356789999999999999999999999999976 69999999999999999999999999997653
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.91 E-value=3.7e-05 Score=62.22 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 001211 409 YSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1123)
Q Consensus 409 Y~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAM 467 (1123)
...+|..+|.+++|.|+..+++.++... ..+.+.+..||..+|.+++|.|+++||+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999876 6889999999999999999999999998754
No 44
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.89 E-value=4e-05 Score=75.36 Aligned_cols=64 Identities=20% Similarity=0.408 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 001211 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1123)
Q Consensus 402 SpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAM 467 (1123)
.+..+....-.|..+|+|+||+|+.+||..++ ......-+.++...+|.|+||+|+++||+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 46778889999999999999999999999887 55567888999999999999999999999887
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.87 E-value=0.0007 Score=76.78 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=74.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh----HHHHHHHHHHHHHHH-------HHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALAD----RREAETLGKKYEEKY-------KQVA 653 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~sel----kreLqsLR~kyEee~-------KqV~ 653 (1123)
|...+..|++.+..+.+.++.+...+.+|..++.....++..+++...++ ..+|+.||.++.+.. +.++
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666666666666666666666555333321 334444444444444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHhCcccc
Q 001211 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRAD-RIQSDLEELLKALTERCKKHGIDVK 723 (1123)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~-~in~el~eL~kqL~E~~k~lgvk~k 723 (1123)
+++.++..++..+..+.+++.+|+++|.+++ ...++.+ -...|+..|+..+.-.|+++|+++.
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~-------~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~ 297 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAE-------KIREECRGWTRSEVKRLKAKVDALEKLTGWKIV 297 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEE
Confidence 5555555555555555555555555555444 1111111 1457888999999999999999874
No 46
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.85 E-value=3.2e-05 Score=82.11 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=68.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHH--HHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 393 NSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREV--LKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 393 ~~~~~Wp~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~--L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
.....| .+..+...|..+|.++|.+.||||+..||+.+|.+.|.|+.- |+.++..+|-|.||+|++.||++..++.
T Consensus 87 yteF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 87 YTEFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred hhhhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 455667 789999999999999999999999999999999999999875 5789999999999999999999766654
Q ss_pred H
Q 001211 471 E 471 (1123)
Q Consensus 471 ~ 471 (1123)
.
T Consensus 165 a 165 (244)
T KOG0041|consen 165 A 165 (244)
T ss_pred h
Confidence 3
No 47
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.83 E-value=5.5e-05 Score=74.44 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001211 7 DQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 7 ~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM 67 (1123)
....-.|..+|.|+||+|+..|+..++ .+.....+.++++.+|.|+||+|+++||+.++
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456778999999999999999999987 45567888999999999999999999999988
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.81 E-value=0.00049 Score=85.14 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
+..++..+++|...-...+.+|.++...+.+.+..++.|+++|.++.++...||+||..+
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777777777777888887777788888888888888888888888888554
No 49
>PTZ00184 calmodulin; Provisional
Probab=97.79 E-value=6.9e-05 Score=72.37 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LV 70 (1123)
+...++.+|..+|.+++|.|+..|+..++...+ +....+..||.++|.+++|.|+++||+.+|..+
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 456788999999999999999999999998765 667899999999999999999999999988754
No 50
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.76 E-value=0.0001 Score=59.61 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001211 9 FESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 9 Ye~vF~~lD~DgDGrISG~Ea~~ff~~S--GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM 67 (1123)
...+|..+|.|++|.|+-.++..++... ..+...+..||..+|.+++|.|+.+||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999986 4888999999999999999999999998754
No 51
>PRK09039 hypothetical protein; Validated
Probab=97.74 E-value=0.0014 Score=75.22 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=51.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001211 583 TTAGKKVDEREKVILDSREKIEFYRSKMQ-------ELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI 655 (1123)
Q Consensus 583 tdL~keLAnLenQied~~Ek~~~lrsQmQ-------ELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~L 655 (1123)
.+|+.+|++|+.+|...+...+.++.+++ +++......+++|.+.+...++..++|..|+.+++.-.+|+..|
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555443333223333222 34444444555666666666666666666665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 656 ASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 656 EsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+..|..+|...++++.++.+|+++|+++
T Consensus 157 e~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 157 EAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554443
No 52
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.72 E-value=6.8e-05 Score=62.67 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=45.1
Q ss_pred CCCcccHHHHHHHHHhC--C-CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001211 20 GDGRISGAEAVAFFQGS--N-LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1123)
Q Consensus 20 gDGrISG~Ea~~ff~~S--G-LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~ 68 (1123)
.+|+|+.++++.+|... + ++.+++..|+..+|.+++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999765 4 8899999999999999999999999999986
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.70 E-value=0.00098 Score=75.61 Aligned_cols=125 Identities=17% Similarity=0.246 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCD----NRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsrae----qeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
+.++-++.-+..++++.+.|+.++.+|..-+...+ .+|+.++ .+|..+..+++...+++.+++.+|..+
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-------~~l~~~~~ei~~~~~~l~e~~~~l~~l 237 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-------EKLKKLLQEIMIKVKKLEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444555555555444444331 1344443 444444445555557777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKS 724 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~ 724 (1123)
+..+.+...++.+++.+|++++. .+.+.=.=...|+..|+.+++-.++++|+++.-
T Consensus 238 ~~~I~~~~~~k~e~~~~I~~ae~------~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~ 293 (312)
T smart00787 238 ESKIEDLTNKKSELNTEIAEAEK------KLEQCRGFTFKEIEKLKEQLKLLQSLTGWKITK 293 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeEe
Confidence 77777788888888888887771 222222234678999999999999999998653
No 54
>PRK11637 AmiB activator; Provisional
Probab=97.68 E-value=0.0016 Score=76.12 Aligned_cols=62 Identities=10% Similarity=0.091 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK 648 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee 648 (1123)
+++.+++.++.++..+++.+..+++.+...-...+.+|+.+..++.+++.+|..++.++++.
T Consensus 61 ~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 61 KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444444444443333
No 55
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.67 E-value=8.3e-05 Score=62.15 Aligned_cols=49 Identities=29% Similarity=0.477 Sum_probs=44.9
Q ss_pred CCCccCHHHHHHHHHhc--C-CCHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 001211 420 RDGRITGEQARNLFMSW--R-LPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1123)
Q Consensus 420 ~DG~ISG~Ear~~F~kS--g-LP~e~L~qIW~LADiDnDG~LdkdEF~IAMh 468 (1123)
.+|+|+.++++.+|... + ++.+++..|+..+|++++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999765 5 8899999999999999999999999999875
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.65 E-value=0.00014 Score=86.93 Aligned_cols=131 Identities=18% Similarity=0.129 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 584 TAGKKVDEREKVILDSREK-----IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (1123)
Q Consensus 584 dL~keLAnLenQied~~Ek-----~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQ 658 (1123)
+|..-|.+++.||+.+..+ +.||+.|++++.....+.-..-+..++++..++..|..|| .+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr--------------~k 311 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLR--------------AK 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchh--------------hh
Confidence 4556677778888774422 7888888888887666654444444444444444444444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeec
Q 001211 659 LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIEL 730 (1123)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~iel 730 (1123)
|..+|..-..+..++..|+-+|...+ ..-...|-++-..|..+-++++.++.||++++++|..|+.||+.
T Consensus 312 lselE~~n~~L~~~I~dL~~ql~e~~--r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 312 LSELESRNSALEKRIEDLEYQLDEDQ--RSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAA 381 (546)
T ss_pred hccccccChhHHHHHHHHHhhhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHH
Confidence 44444444444444444444444333 12334555666666666699999999999999999999999963
No 57
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.62 E-value=0.0018 Score=82.81 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.3
Q ss_pred CCCHHHHH
Q 001211 400 KMKPSDIQ 407 (1123)
Q Consensus 400 ~ISpeDk~ 407 (1123)
.++|.++.
T Consensus 149 ~~~~~~r~ 156 (1164)
T TIGR02169 149 SMSPVERR 156 (1164)
T ss_pred CCCHHHHH
Confidence 45566544
No 58
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.62 E-value=0.0018 Score=82.77 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001211 694 QVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 694 qer~~~in~el~eL~kqL~E 713 (1123)
++++..++.++..++..|.+
T Consensus 461 ~~~~~~~~~~l~~~~~~l~~ 480 (1164)
T TIGR02169 461 AADLSKYEQELYDLKEEYDR 480 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433
No 59
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.57 E-value=0.0024 Score=81.31 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 689 ADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 689 ~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
+-..|++++..++..+..|+.++.+
T Consensus 811 ~~~~~~~~l~~~~~~~~~l~~~~~~ 835 (1179)
T TIGR02168 811 ELTLLNEEAANLRERLESLERRIAA 835 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544
No 60
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.57 E-value=0.0023 Score=81.42 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=8.8
Q ss_pred hhcCCCCCCcCHHHHHHHHHHH
Q 001211 49 HADHNHTSYLGRQEFYNALKLV 70 (1123)
Q Consensus 49 LAD~d~DG~Ldr~EF~vAM~LV 70 (1123)
++..+|-| +.-++.|+.+|
T Consensus 28 i~G~NGsG---KS~ll~ai~~~ 46 (1179)
T TIGR02168 28 IVGPNGCG---KSNIVDAIRWV 46 (1179)
T ss_pred EECCCCCC---hhHHHHHHHHH
Confidence 33444444 44455555554
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.46 E-value=0.00025 Score=75.49 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=61.3
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHH--HHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQV--LAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~--LaqIW~LAD~d~DG~Ldr~EF~vAM~LVa 71 (1123)
+.+.|..+|.++|.|.||+|+..|++.+|.+-|.|+.- |.++...+|-|.||+|++.||+...++++
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999865 57899999999999999999998888765
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.37 E-value=0.00076 Score=62.82 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhCCC--CCCccCHHHHHHHHHh-c--CCC----HHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHH
Q 001211 406 IQKYSKVFMEVDTD--RDGRITGEQARNLFMS-W--RLP----REVLKQVWDLSDQDSDSMLSLREFCFALYLME 471 (1123)
Q Consensus 406 k~kY~~IF~slDkD--~DG~ISG~Ear~~F~k-S--gLP----~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~ 471 (1123)
......+|.+++.. .+|+|+.+|++.+|.+ . .++ .+++..||..+|.+++|.|+++||+.+|.-+.
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 34577899999855 4799999999999974 3 255 89999999999999999999999998877553
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.37 E-value=0.00074 Score=62.89 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCC--CCCcccHHHHHHHHHhC---CCC----HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHH
Q 001211 7 DQFESFFRRADLD--GDGRISGAEAVAFFQGS---NLP----KQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (1123)
Q Consensus 7 ~~Ye~vF~~lD~D--gDGrISG~Ea~~ff~~S---GLP----~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValA 73 (1123)
.....+|..++.. .+|+|+.+|++.+|.+. .++ ...+.+||..+|.+++|.|+++||+..|..++.+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4566788888865 47899999999999743 244 8999999999999999999999999999888765
No 64
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.37 E-value=0.0059 Score=77.46 Aligned_cols=134 Identities=15% Similarity=0.167 Sum_probs=81.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHH--HHHH-HHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRRE--AETL-GKKYEEKYKQVAEIAS 657 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkre--LqsL-R~kyEee~KqV~~LEs 657 (1123)
|+.++++++.+|++++...+..++-++.+|.+|.......+.+++...-++.+++.. ...+ -.+|++....+.+.+.
T Consensus 669 e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~ 748 (1074)
T KOG0250|consen 669 EASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEK 748 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHH
Confidence 455555555555555555555566666666666665555555555554444444442 1110 1135555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 658 KLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
+|+..|+.+.++++++..++.+.++++ ..-+..++++......+++|+..|.++...
T Consensus 749 eIe~~~~~~e~l~~e~e~~~~e~~e~~---~~~~~~~~~l~~e~~~l~~l~~el~~r~dk 805 (1074)
T KOG0250|consen 749 EIEEKEAPLEKLKEELEHIELEAQELE---EYYAAGREKLQGEISKLDALKEELKLREDK 805 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666667777777777777777777777 666677777777777777777777765544
No 65
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.35 E-value=0.013 Score=64.03 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQELVLYKSR-CDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQELl~yKsr-aeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lq 667 (1123)
|.+++.++.+..+..+.++.+.++++..... ........+.++.+.+..+..|+.++++..+.++.....|..+...|.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666555556666666666551110 001122222333334444444444444444444444444444444443
Q ss_pred HHHHHHH-------HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHhCccc
Q 001211 668 ELQERKM-------ELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL-TERCKKHGIDV 722 (1123)
Q Consensus 668 diQ~EL~-------ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL-~E~~k~lgvk~ 722 (1123)
..+..+. .+...+.+++ .+-..+++++..+..++..-..+| +|.+..|.|+-
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~ 161 (302)
T PF10186_consen 102 QRRSRLSASQDLVESRQEQLEELQ---NELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQ 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 3333333 3333333333 333344555555666666555555 66777888853
No 66
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.31 E-value=0.01 Score=67.76 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 645 YEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 645 yEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
|.+...++..++.++..+++.+..++.++.+++.++..++. .....+++++..++.++.+++.+|.+...
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 198 LLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQ--TFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555555555555554431 12334556677777777777777765443
No 67
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.31 E-value=0.00067 Score=71.92 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=55.4
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHh---CCCC--H----HHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG---SNLP--K----QVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~---SGLP--~----~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LV 70 (1123)
.....+=.|+.+|.+++|+|+.+|+..++.. .++. . ..+.+++..+|.|+||+|+++||+.++.-.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 3456777999999999999999999988877 3555 3 456667889999999999999999998765
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.30 E-value=0.0061 Score=75.80 Aligned_cols=103 Identities=12% Similarity=0.213 Sum_probs=64.8
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH---------HHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG---------KKYEEKYK 650 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR---------~kyEee~K 650 (1123)
+|.++|+.+|.+|.+....-++.+..++.++.+.+..|..++.+|.+-+....+. +...-| .+|.+.++
T Consensus 467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~e--e~~aar~~~~~~~~r~e~~e~~r 544 (697)
T PF09726_consen 467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEE--EEKAARALAQAQATRQECAESCR 544 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHhhhhccccchhccchhHHHHH
Confidence 3445555556665555544445588899999999999999999988765332211 112222 25555444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 651 -QVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 651 -qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
...+||..|..++..|+.+++++..|+.++++++
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666677777777777777777777666555
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.25 E-value=0.0068 Score=68.97 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 001211 624 LNEITERALADRREAETLGKKYEE----KYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADR 699 (1123)
Q Consensus 624 Lne~~eq~selkreLqsLR~kyEe----e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~ 699 (1123)
+..+.++..+++.++..|++..++ -..++..+.+.|..++..+..++.+|.+|+.++++++ .+-..+.+++.+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~---~~i~~~~~~k~~ 255 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELE---EKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333334444444444444433221 1124455556666677777777777777777777777 566667777777
Q ss_pred HHHHHHHHHHHHH
Q 001211 700 IQSDLEELLKALT 712 (1123)
Q Consensus 700 in~el~eL~kqL~ 712 (1123)
++.+|+++++.+.
T Consensus 256 l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 256 LLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776664
No 70
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.24 E-value=0.034 Score=55.80 Aligned_cols=125 Identities=12% Similarity=0.179 Sum_probs=68.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
+...|..++..+..++.+...++..++..++........|++.+..--...++.-..|..||.++++...++..|+..+.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666666655544445555666777777666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 661 IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
.+...|...+....+-+..|.+ +...++.|++.++.+-.-|-.||
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~------e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEK------ELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444333222222221 12334455555555555544444
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.23 E-value=0.016 Score=62.25 Aligned_cols=135 Identities=18% Similarity=0.255 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREA----------ETLGKKYEEKYKQVAEIASK 658 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreL----------qsLR~kyEee~KqV~~LEsQ 658 (1123)
|..|..||++.+.++...+..|.++.....+.-.-|..+..++.++++.+ ..++.++....+++..|+-.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655555444444444444443333 33444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 001211 659 LTIEDAKFRELQERKMELHQAIV----NMER-GGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1123)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLq----klq~-g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k 723 (1123)
-.+++..+..++.+..+|+.... .++| ++-.|-.|+.++..+...|+.-..||.|+-...+++..
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~ 178 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 55556666666666666654433 3332 56688899999999999999999999999888887654
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.22 E-value=0.0077 Score=72.60 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=34.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
|..+|.++...|+.++.+++++++.++.+|............+..++......+..+...|..++.+..+.+.+|+..+.
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333333222222222222222333333344444455555555555555555444
Q ss_pred HH
Q 001211 661 IE 662 (1123)
Q Consensus 661 vl 662 (1123)
.+
T Consensus 231 ~l 232 (546)
T PF07888_consen 231 TL 232 (546)
T ss_pred HH
Confidence 33
No 73
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0049 Score=77.05 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=89.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
+..+|...|++++++|+++..+++.+..+||++++....|..+...++.++..++.+...|...++-..+++..|...|.
T Consensus 679 ~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~ 758 (1200)
T KOG0964|consen 679 ELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56678888899999999999999999999999999998887666666666666666666666555555555555555554
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHH----HHHHHhCcccccceee
Q 001211 661 IEDAKFRELQERKM-ELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT----ERCKKHGIDVKSHAVI 728 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~-ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~----E~~k~lgvk~k~~~~i 728 (1123)
.++...+..+++|. +|-.+| ...-+||+..+|-++.+|..+|+ |+..+...|..++.++
T Consensus 759 ~~~~~~~~~e~el~sel~sqL---------t~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 759 KLESQSNYFESELGSELFSQL---------TPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HHHHHHHhHHHHHhHHHHhhc---------CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333321 111222 22335666666666666666663 4555555555555443
No 74
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.21 E-value=0.022 Score=61.17 Aligned_cols=126 Identities=18% Similarity=0.286 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSR----EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 587 keLAnLenQied~~----Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
+.+.++.+=|-+|. +-|..|+.++.++...-.+.+..+.++..+...+..-|+.++ .++++|+.+|..-
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~-------~e~~eL~k~L~~y 81 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAE-------EEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHH
Confidence 45667777777744 237888888888888777777777777655554555555555 5555555555443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH----HHHHHHhCccc
Q 001211 663 ---DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL----TERCKKHGIDV 722 (1123)
Q Consensus 663 ---Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL----~E~~k~lgvk~ 722 (1123)
...|+.++.++..++.+|..++ -++..|+.|...+..|-++|.... .|+++..|+|-
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~l~~Lk---~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn 145 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKELKDLK---WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKN 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347777777888888888888 778888888888888888887655 66777766653
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.19 E-value=0.0062 Score=79.55 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
..+++++.++........++|+.++.++..++..+..++.+++...+++..|+.++..++..+.+++.++..|++++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444333333333333333333333
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.18 E-value=0.0099 Score=75.55 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 001211 600 REKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY 645 (1123)
Q Consensus 600 ~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~ky 645 (1123)
++...-++..+.++......+++..+..+..+-.+++.|..++++.
T Consensus 343 r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 343 RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555555555544455554444433
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.18 E-value=0.017 Score=69.80 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=26.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~ 628 (1123)
+...|.+++..|+.++...+++...|+.+.++|.........+...+.
T Consensus 165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~ 212 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK 212 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655555566666666666555554444444443
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.16 E-value=0.011 Score=67.12 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=96.0
Q ss_pred hhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 584 TAGKKVDEREKVILDSREK-------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA 656 (1123)
Q Consensus 584 dL~keLAnLenQied~~Ek-------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE 656 (1123)
.|.++|..|+.+-..+++. ...|..|-++|. ..|-.+|.+.+.++..+..+|..-.-++..+..+|..|-
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444433 345666655563 457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 657 SKLTIEDAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 657 sQLavlEa~LqdiQ~EL~ELeqeLqklq~g----~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
+||..++..++.+-.+..+|.+.|...+.. ..+...||+|.......|.+.+.+|..+.
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988844411 14566677777777777777777766543
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.14 E-value=0.034 Score=56.85 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~ 627 (1123)
+..|+.+..+..+.+..|+.+++.|.....+.+.+|..+
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444443333333
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.13 E-value=0.017 Score=63.70 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA---------DRREAETLGKKYEEKYKQVAEIAS 657 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~se---------lkreLqsLR~kyEee~KqV~~LEs 657 (1123)
+.|..++++++.++.....++..+++|.+++.+.+.+|.++.+++.. ..+++..|..+++.-.++..+|+.
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555554444444444332 244455566555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 658 KLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+|+.+...+..++.++..|+.++.+++
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555555555555555444
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.12 E-value=0.02 Score=61.34 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE-EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyE-ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
+..|+.++......-...+.+|++...++...+..++.|.+-.+ ..+...++|+.+|..++..+.+...++..|+..+.
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566666666555555666666554333 23445667777788888888888888877777666
Q ss_pred --------HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 682 --------NMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 682 --------klq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
++..-......++..+..++.++..|...|.|+-+
T Consensus 150 L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 150 LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222345556777777777777777777777644
No 82
>PRK02224 chromosome segregation protein; Provisional
Probab=97.11 E-value=0.015 Score=73.49 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.4
Q ss_pred CHHHHHH-HHHHH
Q 001211 402 KPSDIQK-YSKVF 413 (1123)
Q Consensus 402 SpeDk~k-Y~~IF 413 (1123)
+|.++.. ++.||
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 4554433 44444
No 83
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.10 E-value=0.022 Score=62.72 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELH 677 (1123)
Q Consensus 623 eLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELe 677 (1123)
+++.+..++...++.+.+|+-++.+..+.++.|+.++..+...+...+..+.+++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555544444444444444444444444444444333333
No 84
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.06 E-value=0.0017 Score=68.93 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=52.4
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc---CCC--HHH----HHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW---RLP--REV----LKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 407 ~kY~~IF~slDkD~DG~ISG~Ear~~F~kS---gLP--~e~----L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
.+.+=+|.-+|.+++|+|+.+++..++... +.. .+. ++++...+|.|+||+|+++||+-++.-.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 455558999999999999999999998864 466 444 4555678999999999999999988744
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.03 E-value=0.032 Score=66.73 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
+++..+......+..+..++..|+.+|.+++ .....+.+++.++..+|.+|...+.+.-+
T Consensus 341 el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQ---AEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445555555566666666666 44555666666666666666655554433
No 86
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.00 E-value=0.024 Score=59.24 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLY 616 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~y 616 (1123)
+++.++.++.++.+..+....+...+..+...
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333333333
No 87
>PF14658 EF-hand_9: EF-hand domain
Probab=96.97 E-value=0.0017 Score=58.53 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHhc---CCCHHHHHHHHHhhCCCCC-CCcCHHHHHHHHHH
Q 001211 411 KVFMEVDTDRDGRITGEQARNLFMSW---RLPREVLKQVWDLSDQDSD-SMLSLREFCFALYL 469 (1123)
Q Consensus 411 ~IF~slDkD~DG~ISG~Ear~~F~kS---gLP~e~L~qIW~LADiDnD-G~LdkdEF~IAMhL 469 (1123)
.+|..||+++.|.|.-..++.+|+.. +.....|..+.++.|+++. |.|+++.||.+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999964 5788999999999999999 99999999999974
No 88
>PF14658 EF-hand_9: EF-hand domain
Probab=96.95 E-value=0.0017 Score=58.57 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhCC---CCHHHHHHHHHhhcCCCC-CCcCHHHHHHHHHH
Q 001211 11 SFFRRADLDGDGRISGAEAVAFFQGSN---LPKQVLAQIWMHADHNHT-SYLGRQEFYNALKL 69 (1123)
Q Consensus 11 ~vF~~lD~DgDGrISG~Ea~~ff~~SG---LP~~~LaqIW~LAD~d~D-G~Ldr~EF~vAM~L 69 (1123)
..|+.+|+++.|+|...+++.+|+..+ ..+..|..+-+++|.++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 469999999999999999999999864 578999999999999888 99999999999984
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.94 E-value=0.036 Score=63.37 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 636 REAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 636 reLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq-klq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+++...+.+|.+...++..++.+|+.++..+..++.++.++..... +++ .+-..++.++..++.+++.++..|
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVL---EELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555554444444444444444333222 111 122334455555555555444444
No 90
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.93 E-value=0.0057 Score=64.79 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001211 608 SKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG 687 (1123)
Q Consensus 608 sQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~ 687 (1123)
..+.++...++...++|..++.++.+++..+......+.+-.+.+..|+..|..++..|+.++.-++.|+.|+..++
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~--- 157 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ--- 157 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 001211 688 SADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 688 ~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
-+...|.++++.++.|-.+|..-+
T Consensus 158 l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 158 LQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554443
No 91
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.027 Score=73.88 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001211 693 LQVRADRIQSDLEEL 707 (1123)
Q Consensus 693 Lqer~~~in~el~eL 707 (1123)
|+++++.+...+.++
T Consensus 889 l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 889 LEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.88 E-value=0.048 Score=55.78 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYK 650 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~K 650 (1123)
..|+.+.+...++.+.+..++++|.....+.++++..+..++..++.+|..|..++.+-..
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555555555555554444444333
No 93
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.87 E-value=0.07 Score=57.19 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=91.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--------------HHHHhHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE--------------RALADRREAETLGKKYE 646 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~e--------------q~selkreLqsLR~kyE 646 (1123)
++..|..+|..|+.++++..++...++.|+.++..-....+....-+.+ +..+.++-.+.--.||+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888888888876644433222222222 22222333333445899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 647 ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
++...+.-|+..|..+|.......+++.+|..++..+. +.+..|-..-......++...++|++..
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~---~nlk~l~~~ee~~~q~~d~~e~~ik~lt 150 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD---SNLKSLSAKEEKLEQKEEKYEEELKELT 150 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999998888888888899998888776 6666777666666677777776665543
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.87 E-value=0.029 Score=58.64 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~ 628 (1123)
..+..+++++..+......+|...+
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444433
No 95
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.86 E-value=0.034 Score=75.19 Aligned_cols=108 Identities=23% Similarity=0.273 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE-------DAKFRELQERKME 675 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl-------Ea~LqdiQ~EL~E 675 (1123)
...++.+.++|+..-.....+|....++...++++...++.+|++..++++.+|..+..+ |+.++.++.+++.
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444445555555555555554444333 3334444444444
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 676 LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 676 LeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
|++.+.++- .+...|+++++++.++|+..+.++..
T Consensus 976 ~~e~~~kL~---kekk~lEe~~~~l~~~l~~~eek~~~ 1010 (1930)
T KOG0161|consen 976 LDENISKLS---KEKKELEERIRELQDDLQAEEEKAKS 1010 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 44445666666666666665555544
No 96
>PRK03918 chromosome segregation protein; Provisional
Probab=96.84 E-value=0.033 Score=70.19 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=10.4
Q ss_pred ccchhhhhhccccCCC
Q 001211 743 GVWDEDWDKFEDAGFG 758 (1123)
Q Consensus 743 ~~w~e~wd~~~d~~f~ 758 (1123)
..+++-|.+|.+..|.
T Consensus 747 ~~~~~if~~l~~~~~~ 762 (880)
T PRK03918 747 EIASEIFEELTEGKYS 762 (880)
T ss_pred HHHHHHHHHHcCCCee
Confidence 4556778888765554
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.84 E-value=0.087 Score=54.05 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 621 eqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
..+|..++.+...+..+|..|+.+-++-.+.+...+.+|..+|....++..-|..++++..++.
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444455566666666666666667777777777777777777777777777755555
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.83 E-value=0.008 Score=68.34 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQELV 614 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQELl 614 (1123)
+..|+.++++.....+.|..=+++|.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444455555555555
No 99
>PRK02224 chromosome segregation protein; Provisional
Probab=96.82 E-value=0.032 Score=70.53 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (1123)
Q Consensus 638 LqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeL 680 (1123)
+..|+.++.+..+++..++.+|..++..+.+++.++.+++.+|
T Consensus 358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444443
No 100
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.084 Score=59.05 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=27.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET 640 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqs 640 (1123)
+.+++.+++.+++++|+++-.+++.+..|.+++.....+...++..+..+|.+++.+|..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444444444444444444444444444444444444444443
No 101
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.81 E-value=0.037 Score=72.89 Aligned_cols=136 Identities=15% Similarity=0.250 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV-AEIASKLTIEDAK 665 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV-~~LEsQLavlEa~ 665 (1123)
..|+.+.++.+++.+.+..+.++++++......+..++......+..++.+...++.++++.++.- ..++.+|+.++..
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 693 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEE 693 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433444456666667777666666666677666666666666677777776666644 5666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhh---------cCCCchhHHHHHHHHHHHHH-----------HHHHHHHHHHHHhCccc
Q 001211 666 FRELQERKMELHQAIVNMER---------GGSADGLLQVRADRIQSDLE-----------ELLKALTERCKKHGIDV 722 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~---------g~~~n~~Lqer~~~in~el~-----------eL~kqL~E~~k~lgvk~ 722 (1123)
++.++.++.++.+++.+..+ -....+.|.++++.|..+++ +|+++++..-+--||..
T Consensus 694 l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 694 LKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 66666665555555541110 11233445555555544444 44444444445566665
No 102
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.80 E-value=0.064 Score=58.60 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR 642 (1123)
+.+..|++......+++..+..++.++......++.++.++..+...+...|..+.
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE 133 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAE 133 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443344445555555555544444444444444333333333333333
No 103
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.79 E-value=0.042 Score=73.50 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFREL 669 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lqdi 669 (1123)
.+++..+.++..++..|+.+.++...|+......+ ....++......++.|..++++....+++++.++..++..+..+
T Consensus 310 ~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-r~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleel 388 (1486)
T PRK04863 310 VEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444433332111 11222333344444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 001211 670 QERKMELHQAIVNM 683 (1123)
Q Consensus 670 Q~EL~ELeqeLqkl 683 (1123)
+.++.+|+.++.++
T Consensus 389 EeeLeeLqeqLael 402 (1486)
T PRK04863 389 EEEVDELKSQLADY 402 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.77 E-value=0.038 Score=63.05 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
.++.+.++|+.+...+..++.++.+++.++++++ ..-..+.+++.+++.+|+++++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~---~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE---SKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777777777777777776 555566677777777777777755
No 105
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.77 E-value=0.057 Score=72.26 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=58.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC---CCchhHHHHHHHH
Q 001211 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMER----GG---SADGLLQVRADRI 700 (1123)
Q Consensus 628 ~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~----g~---~~n~~Lqer~~~i 700 (1123)
.+.+.+.+.++..++.++++..++++.++.++..++..+..++.++.++++++.++.+ +| =.+..|+..+++.
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF 447 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEF 447 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3333333344444444444444444555555555555555555555555555554443 11 2345566555555
Q ss_pred HHHHHHHHHHH--------------HHHHHHhCcccccceeeecCCCcCCCcccccccch
Q 001211 701 QSDLEELLKAL--------------TERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWD 746 (1123)
Q Consensus 701 n~el~eL~kqL--------------~E~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~ 746 (1123)
...+++++.+| ....+.++...+..-.|+-+--|+ -..|.-..|.
T Consensus 448 ~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~-~~~~~~~~~~ 506 (1486)
T PRK04863 448 QAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWD-VARELLRRLR 506 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH-HHHHHHHHhH
Confidence 55555444444 334445555555666666666665 2333444444
No 106
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.71 E-value=0.078 Score=66.54 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001211 691 GLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1123)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~~k~lgv 720 (1123)
..+++-+.+...+|++|.++++.+-+++|+
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i~~~~~~ 717 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNIKKIVNF 717 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 345566666677777788888777777664
No 107
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.71 E-value=0.048 Score=64.72 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHH
Q 001211 634 DRREAETLGKKYEE 647 (1123)
Q Consensus 634 lkreLqsLR~kyEe 647 (1123)
++++++.|++.+.+
T Consensus 280 l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 280 TKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444433
No 108
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.70 E-value=0.0054 Score=66.35 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LVa 71 (1123)
...++.+|..+|.|+.|.|+-.|++..|...| |+.+.+..|.+..|..+.|.|.+++|+.+|-.+.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 45688999999999999999999999999976 9999999999999988889999999998875543
No 109
>PLN02964 phosphatidylserine decarboxylase
Probab=96.67 E-value=0.0053 Score=75.52 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=56.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001211 8 QFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1123)
Q Consensus 8 ~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~L 69 (1123)
..+++|..+|.|+||.|+-+|+..++...+ .+.++|..+++++|.|++|+|+.+||...|..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 468899999999999999999999998765 78899999999999999999999999988877
No 110
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.67 E-value=0.11 Score=60.27 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+..++++-++...+.+++++|..++++...+...|..|-.+|.+-..+.+.|..+-..+.+.-.+++.+-.+|+..-.++
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~i 198 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQI 198 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333333333333332223333333334444444444444
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHH
Q 001211 684 ERGGSADGLLQVRADRIQSDLEEL 707 (1123)
Q Consensus 684 q~g~~~n~~Lqer~~~in~el~eL 707 (1123)
+ .++..|..|.+.+++-..||
T Consensus 199 e---Q~~~~la~r~~a~q~r~~el 219 (499)
T COG4372 199 E---QEAQNLATRANAAQARTEEL 219 (499)
T ss_pred H---HHHHHHHHHHHHHHHHHHHH
Confidence 4 44445555555554433333
No 111
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.66 E-value=0.054 Score=60.41 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQE----LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA------ 656 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQE----Ll~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE------ 656 (1123)
.+|++|+.|+++++..-..-+-||+- |+.+|++.+++ +.+.+.++|+.+.|...|++..+..+.|.
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~e----k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEE----KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 67888888887755332222333333 33444444444 45556899999999966665555444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 657 -SKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 657 -sQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
.||..+|+.|+..+.+|..|+++|..++
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444444444444444444433
No 112
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.65 E-value=0.0037 Score=72.81 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHh------CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~------SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValA 73 (1123)
++.-.+.+|+++|.|+.|.|+.+|++...+- -.+.++.+.++-+..|-++||++|..||..|.+||...
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 4566789999999999999999998876544 25899999999999999999999999999999999873
No 113
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.65 E-value=0.04 Score=66.64 Aligned_cols=83 Identities=23% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 001211 626 EITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (1123)
Q Consensus 626 e~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~ 705 (1123)
.+..++..++.++..|+.+|++..+.+...+.++-+.+..|.+++.++.-+..-+..++ .+..-|+....+|..+|+
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le---~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE---DELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHH
Confidence 33445556677777788888888777777777766666666666666666666666555 555555566666666665
Q ss_pred HHHHHH
Q 001211 706 ELLKAL 711 (1123)
Q Consensus 706 eL~kqL 711 (1123)
.+.++|
T Consensus 187 ~~r~~l 192 (546)
T KOG0977|consen 187 RARKQL 192 (546)
T ss_pred HHHHHH
Confidence 555544
No 114
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.64 E-value=0.0068 Score=65.59 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 405 Dk~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
-.+.++++|..+|+|+.|.|+..||+..|..+ .|+.+.+.-|.+-.|....|.|.+++|+.++-.+.+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 45789999999999999999999999999987 699999999999999888999999999876655444
No 115
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.077 Score=67.25 Aligned_cols=105 Identities=17% Similarity=0.325 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
+..+.+.|++-..++ +.+|+++..++...++.++.-+.+++.....+..|+-.+..++..++..+.+|.+++.+|..
T Consensus 771 i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~ 847 (1174)
T KOG0933|consen 771 ISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISS 847 (1174)
T ss_pred HHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333 44477777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 683 MERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 683 lq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
++ .+.+.|...++.+..+..+++.+|++
T Consensus 848 l~---~e~~~l~~kv~~~~~~~~~~~~el~~ 875 (1174)
T KOG0933|consen 848 LK---SELGNLEAKVDKVEKDVKKAQAELKD 875 (1174)
T ss_pred HH---HHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 77 77777777777777777777777765
No 116
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.57 E-value=0.19 Score=54.04 Aligned_cols=64 Identities=13% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-----GGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~-----g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
.++...+.++..++..++++..+|..++.+|+++++ .-.+-..|+.++..++..+++-.+.+.+
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666677777777777777777776664 2223455666666666555554444433
No 117
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.57 E-value=0.044 Score=74.14 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lqd 668 (1123)
..+++.++.+..++......+..+|..++...++++..+++.+.+++..+..|+.++.....++++|+..+..++..+..
T Consensus 903 k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~k 982 (1930)
T KOG0161|consen 903 KQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISK 982 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444566666666777777777777777777777777777777777777777888887777777666665
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 669 LQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 669 iQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
+..+...|++++.++. +.-...++++.+++.....|+.+|.+.+
T Consensus 983 L~kekk~lEe~~~~l~---~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 983 LSKEKKELEERIRELQ---DDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555 4444444555544444444444443333
No 118
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.56 E-value=0.014 Score=55.77 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=58.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh-------CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 7 DQFESFFRRADLDGDGRISGAEAVAFFQG-------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 7 ~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~-------SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
.....+|.++-.+ .+.++..|++.++.+ ..-.+..+.+|+...|.|+||.|++.||+..+.-|++|-+.
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~ 83 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACND 83 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 4566789888744 569999999999865 34578999999999999999999999999999988887553
No 119
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.54 E-value=0.006 Score=65.23 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=63.6
Q ss_pred CccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001211 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 3 ~~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~S--GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
|....+.+.+|+.+|.|+||.|+-.|+...|... |-..+-|.=.+.|.|.|+||+|+++|++..+.-|..-...
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 3445677789999999999999999988877663 8889999989999999999999999999999988755544
No 120
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.54 E-value=0.067 Score=64.08 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 627 ITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 627 ~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
+..++.+++..+..++..+++..+....|+..|..+
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 121
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.54 E-value=0.13 Score=56.41 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 001211 612 ELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADG 691 (1123)
Q Consensus 612 ELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~ 691 (1123)
++.....++..++..+++++...+..|+..|.++++....++...+.|.......+....++.++..++...+ ..-.
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ 136 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERK---QRLS 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3333444444445555555555555555555555555455544444444333333344444444444444444 2222
Q ss_pred hHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEE 706 (1123)
Q Consensus 692 ~Lqer~~~in~el~e 706 (1123)
.|+.++......+-.
T Consensus 137 ~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 137 QLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 122
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.52 E-value=0.0051 Score=71.89 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LVa 71 (1123)
..+++.+|+.+|.|+||+|+.+|+.. +..+|..+|.|+||.|+++||..+|+-+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999842 57899999999999999999999988654
No 123
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.50 E-value=0.03 Score=69.00 Aligned_cols=131 Identities=20% Similarity=0.291 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHH---------------------HHHHHHhHHHHHHHHH
Q 001211 586 GKKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEI---------------------TERALADRREAETLGK 643 (1123)
Q Consensus 586 ~keLAnLenQied-~~Ek~~~lrsQmQELl~yKsraeqeLne~---------------------~eq~selkreLqsLR~ 643 (1123)
++.|..|+.++.+ ...+.+..+...+.|+.....|+.+|+++ +++...+...++.||+
T Consensus 38 d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~ 117 (660)
T KOG4302|consen 38 DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRK 117 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHH
Confidence 3445555555544 33445555555555555555555555554 3445556667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHH-HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 001211 644 KYEEKYKQVAEIASKLTIEDAKF--------------RELQ-ERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELL 708 (1123)
Q Consensus 644 kyEee~KqV~~LEsQLavlEa~L--------------qdiQ-~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~ 708 (1123)
+|++..+++.+|..|++-+-..| .++- .+|.+|++.|+.++ +|+.++++ ++.+++
T Consensus 118 qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~---------~ek~~Rle-kv~~~~ 187 (660)
T KOG4302|consen 118 QKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQ---------KEKSDRLE-KVLELK 187 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHH---------HHHHHHHH-HHHHHH
Confidence 88888887777777765553332 2222 66777777777777 55555554 356788
Q ss_pred HHHHHHHHHhCcccccce
Q 001211 709 KALTERCKKHGIDVKSHA 726 (1123)
Q Consensus 709 kqL~E~~k~lgvk~k~~~ 726 (1123)
+.|...|..||+++.-++
T Consensus 188 ~~I~~l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 188 EEIKSLCSVLGLDFSMTV 205 (660)
T ss_pred HHHHHHHHHhCCCcccch
Confidence 888999999999998544
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.50 E-value=0.12 Score=64.78 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 633 ADRREAETLGKKYEEKYKQV-AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 633 elkreLqsLR~kyEee~KqV-~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+++.+++.|+++++++++.+ ..++.+++.+.+..+.++.++.++++++.++-+...+-..|+.+++..+.-.+.|..++
T Consensus 320 ~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 320 AAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444443 44445555555555566666666666665544333455566666666666666666666
Q ss_pred HHHHHHhCc
Q 001211 712 TERCKKHGI 720 (1123)
Q Consensus 712 ~E~~k~lgv 720 (1123)
+|-......
T Consensus 400 ~e~~~~~~~ 408 (754)
T TIGR01005 400 RQAASRQNY 408 (754)
T ss_pred HHHHHhhcC
Confidence 664333333
No 125
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.49 E-value=0.0063 Score=71.04 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHh----c--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001211 406 IQKYSKVFMEVDTDRDGRITGEQARNLFMS----W--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1123)
Q Consensus 406 k~kY~~IF~slDkD~DG~ISG~Ear~~F~k----S--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~ 474 (1123)
|..++.||+-+|+|..|.|+-+|.+....- . -+..+.+.++-+..|.++||.||+.||+-|.+|+.+.+
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 455788999999999999999998766542 1 58999999999999999999999999999999999865
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.46 E-value=0.14 Score=51.55 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 623 eLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
++..+.+.+......+.....+|+.++..-+..-..|..+...+..++.++.+|+.++...+
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455555666677777666666666666666666666666666666555333
No 127
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.053 Score=69.50 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhcCCCHH
Q 001211 425 TGEQARNLFMSWRLPRE 441 (1123)
Q Consensus 425 SG~Ear~~F~kSgLP~e 441 (1123)
+..++..||.+-+|+..
T Consensus 653 ~aq~cI~fl~~~nLgra 669 (1293)
T KOG0996|consen 653 TAQECINFLKKNNLGRA 669 (1293)
T ss_pred HHHHHHHHHHHcCCCce
Confidence 56677788887777664
No 128
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.45 E-value=0.22 Score=54.52 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQL 659 (1123)
.+|..|+.++..++....-...+++++.....-.+++|..+..++......|..|..++......+..|+.+.
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666666555555555555566655555555566666666665556666666655555555555555443
No 129
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.45 E-value=0.0026 Score=48.52 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=21.1
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001211 42 VLAQIWMHADHNHTSYLGRQEFYNALK 68 (1123)
Q Consensus 42 ~LaqIW~LAD~d~DG~Ldr~EF~vAM~ 68 (1123)
++.+|++.+|.|+||+|+++||..+|+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 467778888888888888888887775
No 130
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.45 E-value=0.038 Score=68.97 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=88.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHH-----
Q 001211 580 QDSTTAGKKVDEREKVILDSREK--------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE----- 646 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek--------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyE----- 646 (1123)
+|...|..++.+|+..++=+++. ...-..||++|+.|..|.-+-|-.++.-.+..+.+.+.+.++.|
T Consensus 332 ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 34445555555555555443322 23334567777777777666565555444444444444444444
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 001211 647 --EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL------LKALTERCKKH 718 (1123)
Q Consensus 647 --ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL------~kqL~E~~k~l 718 (1123)
+-....+.|..+|..+|..+.++|+++..--.+..=..|=.+.|-+|.+|+..+..++++| ..||.|-.+.+
T Consensus 412 ~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~el 491 (1243)
T KOG0971|consen 412 LEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNREL 491 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555566666666666554322222211222266777888887777666544 45666655444
Q ss_pred CcccccceeeecCCCcC-------CCcccccccchhhhhhccc
Q 001211 719 GIDVKSHAVIELPFGWQ-------PGIQEGAGVWDEDWDKFED 754 (1123)
Q Consensus 719 gvk~k~~~~ielp~gw~-------~~~~e~a~~w~e~wd~~~d 754 (1123)
-+.++-+ |++=-|-- .--||.+++.|----||-+
T Consensus 492 e~DLreE--ld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRe 532 (1243)
T KOG0971|consen 492 ELDLREE--LDMAKGARKELQKRVEAAQETVYDRDQTIKKFRE 532 (1243)
T ss_pred HHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4443332 22222211 1236666766665556543
No 131
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.44 E-value=0.14 Score=50.40 Aligned_cols=81 Identities=12% Similarity=0.246 Sum_probs=38.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLav 661 (1123)
..++...|+.|+..|++.+...+.|-++-.+ ++..++.|+.+-+..++.|.+|+.+|..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~---------------------L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQ---------------------LRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777765554443333222222 3444444554444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001211 662 EDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+...|.+.+.-+.+|+..+.+.
T Consensus 70 a~~~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 70 ARRNLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444433
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.44 E-value=0.043 Score=65.15 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=5.3
Q ss_pred HHHHHHHHhhCC
Q 001211 441 EVLKQVWDLSDQ 452 (1123)
Q Consensus 441 e~L~qIW~LADi 452 (1123)
..+.+|++-.+.
T Consensus 81 ~v~~~vi~~l~l 92 (498)
T TIGR03007 81 PNLEKVIRMLDL 92 (498)
T ss_pred HHHHHHHHHcCC
Confidence 344444444444
No 133
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=0.009 Score=62.19 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~S--GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~ 68 (1123)
.......|+..|.|++|+|+..+++.+...- +|.+++|..+.+-||.|+||-|+-+||+..|+
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 4567788999999999999999999999886 49999999999999999999999999998875
No 134
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.41 E-value=0.12 Score=66.12 Aligned_cols=138 Identities=18% Similarity=0.227 Sum_probs=79.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHH-------
Q 001211 582 STTAGKKVDEREKVILDSREK------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK------- 648 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee------- 648 (1123)
..|+..++..|.+.+...++| .+.|+.+..++.. ....+.++..++..++.+|..|+..|-.+
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~----~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l 481 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKE----MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELL 481 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 346667788888888888888 5555433222221 12223344444444555555555555533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 001211 649 YKQVAEIASKLTIEDAKFRELQERKMELHQA-------IVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (1123)
Q Consensus 649 ~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe-------Lqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk 721 (1123)
+++++.++.+|......|...++++.+++.. |.++. .-...|..|+..++..+++.+.-++..-+++|=+
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~---~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQE---KSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444444444444444444444 33444 5556777888888888888888888777777766
Q ss_pred cccce
Q 001211 722 VKSHA 726 (1123)
Q Consensus 722 ~k~~~ 726 (1123)
-++..
T Consensus 559 ~~~~d 563 (1041)
T KOG0243|consen 559 DRLDD 563 (1041)
T ss_pred hcccc
Confidence 66553
No 135
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.41 E-value=0.042 Score=68.70 Aligned_cols=17 Identities=35% Similarity=0.249 Sum_probs=9.4
Q ss_pred CHHHHHHHHHhhCCCCC
Q 001211 439 PREVLKQVWDLSDQDSD 455 (1123)
Q Consensus 439 P~e~L~qIW~LADiDnD 455 (1123)
++..+.+|.+-.+.+.+
T Consensus 83 Sr~v~~~VV~~L~L~~~ 99 (754)
T TIGR01005 83 SNEILKQVVDKLGLARL 99 (754)
T ss_pred cHHHHHHHHHHcCCCCC
Confidence 44556666665555444
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.39 E-value=0.24 Score=55.45 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
.++..|..+..+|.+|+.++.....
T Consensus 259 ~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 137
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=96.38 E-value=0.078 Score=59.33 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSR---EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (1123)
Q Consensus 589 LAnLenQied~~---Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~ 665 (1123)
|.++.+.+.++. -+.+|||+++.++...+...+ .......++...+|.|+..+.+.+....+++..|..|..+...
T Consensus 151 l~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 151 LKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 348999999999988866553 2233344555668888888877777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001211 666 FRELQERKMELHQAIVNME 684 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq 684 (1123)
+.+++.+|.+|+.+-.++.
T Consensus 230 i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 230 ITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666655
No 138
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.37 E-value=0.26 Score=50.16 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=52.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 001211 613 LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGL 692 (1123)
Q Consensus 613 Ll~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~ 692 (1123)
|.....+...++..++..+..++..++.+..++.....+...++.++..++..++..+.+++.|...++..+ ..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~------tq 130 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK------TQ 130 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 333333333333333334444444444444444444456666666666666666666666666666666555 34
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001211 693 LQVRADRIQSDLEELLKALT 712 (1123)
Q Consensus 693 Lqer~~~in~el~eL~kqL~ 712 (1123)
....+++.+.|++.|+.+|.
T Consensus 131 ~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55666677777777777764
No 139
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.35 E-value=0.0077 Score=64.40 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCC
Q 001211 407 QKYSKVFMEVDTDRDGRITGEQARNLFMS--WRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYREGRPLP 480 (1123)
Q Consensus 407 ~kY~~IF~slDkD~DG~ISG~Ear~~F~k--SgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~~~G~~LP 480 (1123)
..-+.+|..+|+|+||+|+..|....|.. -|-..+-|+=...|.|.|+||+|+++|++-.+.-|+........|
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 34456788999999999999997767663 388889999888999999999999999999988888887653333
No 140
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.34 E-value=0.24 Score=58.58 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=7.3
Q ss_pred CC-CCCCcccccCC
Q 001211 871 FD-NDDTDSVWGFN 883 (1123)
Q Consensus 871 fd-~~d~ds~w~~~ 883 (1123)
-| ++-.-||.|+|
T Consensus 357 ldhG~gy~slyg~~ 370 (420)
T COG4942 357 LDHGGGYHSLYGGN 370 (420)
T ss_pred EEcCCccEEEeccc
Confidence 45 34444677766
No 141
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.33 E-value=0.058 Score=71.65 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=11.3
Q ss_pred CCCCCCCCCHHHH-HHHHHHHH
Q 001211 394 SQVPWPKMKPSDI-QKYSKVFM 414 (1123)
Q Consensus 394 ~~~~Wp~ISpeDk-~kY~~IF~ 414 (1123)
-++.||...|.++ ..++.||.
T Consensus 159 ge~~~~~~~~~~rk~~~d~if~ 180 (1311)
T TIGR00606 159 EDSNWPLSEGKALKQKFDEIFS 180 (1311)
T ss_pred cccccccCChHHHHHHHHHHhh
Confidence 3456865455543 44666663
No 142
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.28 E-value=0.13 Score=63.85 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=23.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRS-------KMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrs-------QmQELl~yKsraeqeLne~~ 628 (1123)
++++.++..+..|+.++...+.++..|+. +.|.|+...+..+.+|++..
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~e 140 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENE 140 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444444444444 44444444444444444443
No 143
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.26 E-value=0.27 Score=57.26 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 001211 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG---KKYEEKYKQVAEIASKLTIEDA 664 (1123)
Q Consensus 588 eLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR---~kyEee~KqV~~LEsQLavlEa 664 (1123)
+|+.+.+|+-+++..+..|.+|..+|..++....++-+++...++.++-++.+|. ++++++-+.+..-.+++...+.
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ 217 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTE 217 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555443333333322333333333332 2233333333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 665 ~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
.|...+..++++.++|++.. ..|++.+.++..-.++++|+-
T Consensus 218 ela~r~aa~Qq~~q~i~qrd----------~~i~q~~q~iaar~e~I~~re 258 (499)
T COG4372 218 ELARRAAAAQQTAQAIQQRD----------AQISQKAQQIAARAEQIRERE 258 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHH
Confidence 55555555555555555443 456666666666666665543
No 144
>PLN02964 phosphatidylserine decarboxylase
Probab=96.23 E-value=0.014 Score=71.99 Aligned_cols=68 Identities=16% Similarity=0.312 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHH
Q 001211 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (1123)
Q Consensus 402 SpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhL 469 (1123)
+.+++...+.+|..+|.|++|.|+.+|+..++... +.+.++|..++++.|.|++|.|+++||.-+|..
T Consensus 174 te~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 44455567888888888888888888888888765 377888888888888888888888888766654
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.22 E-value=0.24 Score=56.59 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~L 666 (1123)
..+++++.++..+.+.++.+..++++|+..+.+..++|..+..+ ++.|..+-++..++.-.++-++...+..+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e-------~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE-------LEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666777777777777777766555554433 33444344444455556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhh------------------------cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001211 667 RELQERKMELHQAIVNMER------------------------GGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 667 qdiQ~EL~ELeqeLqklq~------------------------g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~ 722 (1123)
..++.++.-+..+|.++++ |.- ...++--++||+-+.++.-.|.-.++++|+++
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl--~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f 193 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRL--PNVPVEWNEINAAWGQTALLLQTLAKKLNFKF 193 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--B--TTB---HHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccC--CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7777777777777777764 111 23568899999999999999999999999886
Q ss_pred ccceeeecCCCcCCCcc
Q 001211 723 KSHAVIELPFGWQPGIQ 739 (1123)
Q Consensus 723 k~~~~ielp~gw~~~~~ 739 (1123)
.- -.=+|.|=.--|.
T Consensus 194 ~~--y~l~P~Gs~S~I~ 208 (314)
T PF04111_consen 194 QR--YRLVPMGSFSKIE 208 (314)
T ss_dssp SS--EEEE--GGG-EEE
T ss_pred cc--ceeEecCCCCEEE
Confidence 54 3334666443343
No 146
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.21 Score=60.54 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=38.3
Q ss_pred chhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSR---EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA 656 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~---Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE 656 (1123)
.++.+|+++..+|.++|...+ .+++.+|++..-|+.-..+.+.=++.++..+......|+.|..+|+++-.+++.|+
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777776432 22555555555444443333333444444444444444444444444444443333
Q ss_pred HH
Q 001211 657 SK 658 (1123)
Q Consensus 657 sQ 658 (1123)
++
T Consensus 315 ~~ 316 (581)
T KOG0995|consen 315 KE 316 (581)
T ss_pred HH
Confidence 33
No 147
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.16 E-value=0.44 Score=60.14 Aligned_cols=84 Identities=13% Similarity=0.275 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh---HHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 601 EKIEFYRSKMQELVLYKSRCDNRL---NEIT-------ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQ 670 (1123)
Q Consensus 601 Ek~~~lrsQmQELl~yKsraeqeL---ne~~-------eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ 670 (1123)
+..+.||.++.+|...+..+++-. .+.. ++..+++..+..|+.+..+-+.+.+.+..|+.++|...-++.
T Consensus 386 ~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~ 465 (980)
T KOG0980|consen 386 EEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVE 465 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 336678888888888877776555 2222 344455555666666666667777888888888888888888
Q ss_pred HHHHHHHHHHHHHh
Q 001211 671 ERKMELHQAIVNME 684 (1123)
Q Consensus 671 ~EL~ELeqeLqklq 684 (1123)
+++.+|...|.+++
T Consensus 466 ~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 466 EENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888877
No 148
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.14 E-value=0.087 Score=65.24 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=53.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDA 664 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa 664 (1123)
|+.++++++-.+.+.+-+.+.+..++++|+.+...+....+.+.+.+...++++++|.....+-..|++++...+..+|.
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44555555555555556677777888888888777766666676666666777777766666666667777766654444
Q ss_pred H
Q 001211 665 K 665 (1123)
Q Consensus 665 ~ 665 (1123)
-
T Consensus 408 ~ 408 (1265)
T KOG0976|consen 408 G 408 (1265)
T ss_pred c
Confidence 4
No 149
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.086 Score=67.73 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAK-------FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavlEa~-------LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL 707 (1123)
+-++..|.+..+..++++.+|+.+|...... |.+++.+|..+.+++.+.. .+-..|+....+++.++..+
T Consensus 506 esel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~---k~l~~~~~e~~~~~~~~~~~ 582 (1293)
T KOG0996|consen 506 ESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKE---KELPKLRKEERNLKSQLNKL 582 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666443333 3333333333333333333 44444444444444444444
Q ss_pred HHHHHH
Q 001211 708 LKALTE 713 (1123)
Q Consensus 708 ~kqL~E 713 (1123)
...+.|
T Consensus 583 rqrveE 588 (1293)
T KOG0996|consen 583 RQRVEE 588 (1293)
T ss_pred HHHHHH
Confidence 444444
No 150
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.14 E-value=0.012 Score=68.83 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 405 Dk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
-+..++.+|..+|.++||+|+.+|+.. +..++++.|.|+||+|+++||..+|..+.+
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 567788999999999999999999842 688999999999999999999999887654
No 151
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.017 Score=60.31 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 001211 406 IQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1123)
Q Consensus 406 k~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMh 468 (1123)
+......|.-+|-|++|+|+...++.+.... +|..++|..+..-||.|+||.|+.+||+-.|.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 4456677888888999999999999888876 69999999999999999999999999987664
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.13 E-value=0.093 Score=57.68 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001211 585 AGKKVDEREKVILDSREK---IEFYRSKMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek---~~~lrsQmQELl~yKsraeqeLne~~ 628 (1123)
+.+..++|.++++..++. +.-|++++++|+..|.++.++|+.+.
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333322 55555555555555555555555444
No 153
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.09 E-value=0.15 Score=62.35 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
+..++.++.+|.+++..++ .+-..+++.+..+..+-.+...+|.++++.+
T Consensus 378 ysel~e~leel~e~leeie---~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 378 YSELQEELEEILKQLEEIE---KEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777 6666777777777777777777777766554
No 154
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.09 E-value=0.15 Score=63.18 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 648 e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
.+.+-.+|..||+.++..|-.+-++..+|..+|+.-+ ..+..|++++.+++.+|..|+.+|
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq---~~~keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ---HVKKELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677776666666666666666666555 444556666666666666666555
No 155
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.07 E-value=0.47 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
.||.|+.+++.+...|+.||-+|=
T Consensus 120 ~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 120 GLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555566666664443
No 156
>PRK01156 chromosome segregation protein; Provisional
Probab=96.07 E-value=0.2 Score=63.88 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=3.3
Q ss_pred CCHHHHH
Q 001211 401 MKPSDIQ 407 (1123)
Q Consensus 401 ISpeDk~ 407 (1123)
.+|.++.
T Consensus 146 ~~~~~r~ 152 (895)
T PRK01156 146 GDPAQRK 152 (895)
T ss_pred CCHHHHH
Confidence 3555444
No 157
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.07 E-value=0.3 Score=53.73 Aligned_cols=79 Identities=8% Similarity=0.056 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
...+++..++...+.....++..++.++..++...+.|...++++.+.+++|+.++..++...+.+.--+.++-.+|..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666666666666666666666777777777777766666666666666666665
No 158
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.05 E-value=0.12 Score=63.26 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
++..+.++..++.+++.+..+++ ..-..|+....++...|.+++..|.+
T Consensus 381 l~e~leel~e~leeie~eq~ei~---e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLS---EMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444 33334444444444445555555544
No 159
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.05 E-value=0.27 Score=55.02 Aligned_cols=124 Identities=13% Similarity=0.181 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK-LTIED 663 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQ-LavlE 663 (1123)
..++++.|+.|+.+...++...+.++.-|..|+. ++ .---.-+|+.+.|+|+.|+...+.+..++..+-.. ++.++
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~E--YPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HE--YPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888887777777888888888888876 32 33323478899999999998888888888666554 34444
Q ss_pred HHHHHHHHHHHH-HHHHHH-----HHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 664 AKFRELQERKME-LHQAIV-----NMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 664 a~LqdiQ~EL~E-LeqeLq-----klq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
.....++.++.. +-..++ .+.+-..+|..++..|.....++++|+..+
T Consensus 156 ~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 156 RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 111111 111111345555555555555555555444
No 160
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=96.04 E-value=0.086 Score=61.32 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (1123)
Q Consensus 599 ~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeq 678 (1123)
+.......+.+|..|....++. |..+..+=.-++..++.|.++|.+....+.+++.+...+.+....+..+|++|.+
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~---lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKT---LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333444444454444444444 4444333333556666677777777777777777765555554444444444444
Q ss_pred HHHHHh
Q 001211 679 AIVNME 684 (1123)
Q Consensus 679 eLqklq 684 (1123)
+|.++|
T Consensus 309 eLe~vK 314 (359)
T PF10498_consen 309 ELEQVK 314 (359)
T ss_pred HHHHHH
Confidence 444433
No 161
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.03 E-value=0.31 Score=52.75 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=86.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
|+.-|...|.+.+.++..-...+=.|+.++.++...-...+.++..+.....+-..+++....+++.....++.|..+|.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 34444444444444443333346677777777777777666667766665555666777777777777777777888888
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHh--hcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 661 IEDAKFRELQERKMEL-----------HQAIVNME--RGGSADGLLQVRADRIQSDLEELLKALTER 714 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~EL-----------eqeLqklq--~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1123)
.+|..+..++..+..+ +....+++ .+...-..|+..++++.++|..+..+..+.
T Consensus 91 ~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q 157 (202)
T PF06818_consen 91 QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ 157 (202)
T ss_pred hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence 8888887777777775 11111222 123456778888899998888777766543
No 162
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.02 E-value=0.24 Score=57.89 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 634 DRREAETLGKKYEEKYKQV-AEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV-~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
++.+++.|+.++.++.+++ ..++..+..+...++.++.++.++++++.++.
T Consensus 287 l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 338 (444)
T TIGR03017 287 AQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELN 338 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443332 22333333444444444444444444444333
No 163
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.01 E-value=0.031 Score=53.51 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=53.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHh-------cCCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHHH
Q 001211 407 QKYSKVFMEVDTDRDGRITGEQARNLFMS-------WRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (1123)
Q Consensus 407 ~kY~~IF~slDkD~DG~ISG~Ear~~F~k-------SgLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~~ 473 (1123)
...-.+|.++-.+ .+.|+..|++.++.+ ..-....|++|+...|.|+||.|++.||+..+.-|..+
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3466789999843 579999999988853 24578999999999999999999999998877755443
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.00 E-value=0.23 Score=56.98 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHH
Q 001211 622 NRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT---------------------------------IEDAKFRE 668 (1123)
Q Consensus 622 qeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa---------------------------------vlEa~Lqd 668 (1123)
+.|.+.+++...+..+|..|++++.+-..|++-|..+++ .+|..|+.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888888888888887777777776542 22222333
Q ss_pred HHHHHHHH--------------HHHHHHHhhcC-----------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001211 669 LQERKMEL--------------HQAIVNMERGG-----------SADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1123)
Q Consensus 669 iQ~EL~EL--------------eqeLqklq~g~-----------~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgv 720 (1123)
+-.|+++| ..||..+=.|. .||..||||+.+++.|++-++..|.-|-..+.-
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32333222 22332222121 368899999999999999999999999888774
No 165
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.99 E-value=0.24 Score=65.96 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
|..|..+.+++.+|..+|.+++ .+-..|+.++...+.+++++..+.
T Consensus 887 e~~L~el~~el~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAK---EQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444 444444444444444444444333
No 166
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.97 E-value=0.14 Score=63.97 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=75.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
+...+..++.++..+++.+++.+.....+++.++..+......+. +...+++.++.|....+...+.+..|+++|.
T Consensus 176 ~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~ 251 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQELE 251 (670)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 444555666666666666665555555555554444433333222 3335677777777777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 001211 661 IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~ 705 (1123)
.++..+..+..+...++.+++.+. .....|+.++...+.++-
T Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 252 ELKAELKELNDQVSLLTREVQEAL---KESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888666 555555555555555544
No 167
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.96 E-value=0.5 Score=50.79 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHH---
Q 001211 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRA--- 697 (1123)
Q Consensus 621 eqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~--- 697 (1123)
+.+|.+++..+..++..-..|-+..-+.-+....|...|..+......++.+...|+..+.++. .++..||.++
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~---~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA---TEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH---HhhHHHHHHHHHH
Confidence 4444444444433333333333333333333333334444444444444444555555555555 5667777766
Q ss_pred -----------HHHHHHHHHHHHHHHHHHH
Q 001211 698 -----------DRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 698 -----------~~in~el~eL~kqL~E~~k 716 (1123)
.+.+..+++|...+.||-.
T Consensus 143 e~l~~~~da~l~e~t~~i~eL~~~ieEy~~ 172 (193)
T PF14662_consen 143 ESLICQRDAILSERTQQIEELKKTIEEYRS 172 (193)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344556666666666543
No 168
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.95 E-value=0.26 Score=62.11 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA 656 (1123)
Q Consensus 610 mQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE 656 (1123)
++++.++....+++.+.+++..+++..+=..|-.||++.+||++.-+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~ 458 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAE 458 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555554444444445555555444433
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.94 E-value=0.15 Score=56.08 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-hCccc
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK-HGIDV 722 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~-lgvk~ 722 (1123)
...|++|.+.++.|+..|.+++ .+....++.|.+...++..|+.++++.-+- +||.-
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~---~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAE---SERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3334444444444444444444 333334444444445555555555553333 66654
No 170
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.91 E-value=0.19 Score=60.05 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=56.1
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 618 SRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 618 sraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
.-|.++|+.++.++..+..+|+.+.++.-.++..+..|.++|..+...++-+.-|+++|.+=|+..+
T Consensus 201 ~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 201 GDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999888888888888888888888888888999999988888888888888888777665
No 171
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.90 E-value=0.18 Score=59.67 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001211 400 KMKPSDIQKYSKVFMEV 416 (1123)
Q Consensus 400 ~ISpeDk~kY~~IF~sl 416 (1123)
+|+..|.-+|-.+|.+.
T Consensus 85 ~mt~~Dll~F~~~~~~~ 101 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQ 101 (493)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 89999999999998763
No 172
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.89 E-value=0.17 Score=60.02 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=55.1
Q ss_pred hhhhhHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCch
Q 001211 620 CDNRLNEITERALADRREAET-------LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG-SADG 691 (1123)
Q Consensus 620 aeqeLne~~eq~selkreLqs-------LR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~-~~n~ 691 (1123)
.+..|.+.+.++..+.-+|+. |..+|-.+..+...--+|....+..|..+.+++..|++---++++.. ..-.
T Consensus 402 tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 402 TQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444333333 55555666666655566666667777777666555554333333222 2333
Q ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHhCcccccceee
Q 001211 692 LLQVRADRI-------QSDLEELLK-ALTERCKKHGIDVKSHAVI 728 (1123)
Q Consensus 692 ~Lqer~~~i-------n~el~eL~k-qL~E~~k~lgvk~k~~~~i 728 (1123)
.||+.-... +.|++.-++ .|.||+++ |.+++.+|
T Consensus 482 lLkrEKe~~EqefLslqeEfQk~ekenl~ERqkL---Ks~leKLv 523 (527)
T PF15066_consen 482 LLKREKETREQEFLSLQEEFQKHEKENLEERQKL---KSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHH
Confidence 444444433 333333332 34778887 87777665
No 173
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.88 E-value=0.2 Score=59.44 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
.++++++.++.++++++.+|.....
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777754433
No 174
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.88 E-value=0.3 Score=60.56 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001211 667 RELQERKMELHQAIVNM 683 (1123)
Q Consensus 667 qdiQ~EL~ELeqeLqkl 683 (1123)
+.++.+|.+|+..|..+
T Consensus 198 keL~~kl~~l~~~l~~~ 214 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNL 214 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.87 E-value=0.33 Score=57.49 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001211 698 DRIQSDLEELLKALTE 713 (1123)
Q Consensus 698 ~~in~el~eL~kqL~E 713 (1123)
.....++++|+.||++
T Consensus 431 ~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444455555543
No 176
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.86 E-value=0.023 Score=67.83 Aligned_cols=76 Identities=22% Similarity=0.463 Sum_probs=67.0
Q ss_pred CC--CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCC-----HHHHHHHHHhhCCCCCCCcCHHHHHHHHHH
Q 001211 397 PW--PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLP-----REVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (1123)
Q Consensus 397 ~W--p~ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP-----~e~L~qIW~LADiDnDG~LdkdEF~IAMhL 469 (1123)
+| +.+|.+|.....+-|.++| |++|+|+-.++.++|.+.+++ .++++.|..-++.|.+|+++++||+.+++=
T Consensus 7 ~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 7 PWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45 4689999999999999999 999999999999999987654 699999999999999999999999986665
Q ss_pred HHHH
Q 001211 470 MERY 473 (1123)
Q Consensus 470 I~~~ 473 (1123)
+..+
T Consensus 86 l~s~ 89 (627)
T KOG0046|consen 86 LKSK 89 (627)
T ss_pred hhhh
Confidence 4443
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.81 E-value=0.29 Score=57.10 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE----IASKLTIEDAKFRELQERKMELHQ 678 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~----LEsQLavlEa~LqdiQ~EL~ELeq 678 (1123)
..-.|.-++++..++..+...+.+++... ..|..++...+.++.. |.+||..+=..|+.++.+|.+++.
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~~~~L-------~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPETKSQL-------DKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888766666554333 3344344444444433 344555555557788888888888
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 679 AIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 679 eLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
+..++. .....+...+.+|..+|++++.++.|+...|
T Consensus 288 ~y~~~s---~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 288 KYKQAS---EGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 877777 5666777788888888888888887775443
No 178
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.77 E-value=0.21 Score=63.55 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 001211 645 YEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1123)
Q Consensus 645 yEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~k 709 (1123)
|-+.+-+++-+..+|..++..-+-++++++=|+++|++++.... -.+|...|=+.+.+|+.|+.
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse-~~tleseiiqlkqkl~dm~~ 315 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSE-GATLESEIIQLKQKLDDMRS 315 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHH
Confidence 44444455556666777777777777888888888887773221 15555555555555444443
No 179
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.77 E-value=0.35 Score=58.81 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 622 NRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 622 qeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
..|..+++++..++..+.+|+.+++.+...+..+..+..........++.+|..++.+|..++
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 345555667777888888899999888888888888877766666666666666666665433
No 180
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.73 E-value=0.4 Score=48.10 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=45.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLav 661 (1123)
+..|...|..++.++ ..++.++..|...|..+.++|-.+..+..++ ..+.+++.+-.+++++|+.+...
T Consensus 18 ve~L~s~lr~~E~E~-------~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 18 VERLQSQLRRLEGEL-------ASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555 7777777788888877766666665333322 22221111222333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001211 662 EDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+=.-|-.+-++..+|+.-|+.+|
T Consensus 87 ~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 87 LLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHhcchHHHHHHHHHHHHHHH
Confidence 33334444444555555555444
No 181
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=0.19 Score=64.22 Aligned_cols=106 Identities=11% Similarity=0.234 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+.|..|+.+|+. ++. ++.++...+.-++..|..++.++++...++...+.+|.-.|+.+..++-++.+++..|+..
T Consensus 662 ~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~ 737 (1141)
T KOG0018|consen 662 ERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNR 737 (1141)
T ss_pred HHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 556677777777 443 6777777777777777778877777777777777777777777777777777777777766
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001211 684 ERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 684 q~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~ 722 (1123)
+ ..-..|++|++.+...+ ..+.|...||+.
T Consensus 738 e---~~~~~L~~~~n~ved~i------f~~f~~~igv~i 767 (1141)
T KOG0018|consen 738 E---GEMKELEERMNKVEDRI------FKGFCRRIGVRI 767 (1141)
T ss_pred H---HHHHHHHHHHHHHHHHH------HHHhhhhcCeee
Confidence 6 44445555555554332 244555555543
No 182
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=95.72 E-value=1.2 Score=47.11 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHH
Q 001211 594 KVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQ-VAEIA-SKLTIEDAKFRELQE 671 (1123)
Q Consensus 594 nQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~Kq-V~~LE-sQLavlEa~LqdiQ~ 671 (1123)
.++..+-.......++.+++.+.+-+.++++ ++..+.++++.+..+.+..+..+.+ |+.|. .....+..+++..+.
T Consensus 15 ~~~~~sls~~~~~~kqve~~~l~~lkqqqd~--itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~ 92 (165)
T PF09602_consen 15 KQWSQSLSLFASFMKQVEQQTLKKLKQQQDW--ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTD 92 (165)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444455555554443333333 5555555666666655555554444 34442 345566777777777
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 672 RKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 672 EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
+++||...|+++-. ..--.+=.-+.+++.+++|+.++|-|+++
T Consensus 93 k~~El~~~i~el~~--~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk 135 (165)
T PF09602_consen 93 KLNELSAKIQELLL--SPSKSSFSLLSQISKQYEETVKQLIEQQK 135 (165)
T ss_pred HHHHHHHHHHHHHc--chHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777775541 11113345577888888888888877666
No 183
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.72 E-value=0.013 Score=44.50 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 001211 8 QFESFFRRADLDGDGRISGAEAVAFFQG 35 (1123)
Q Consensus 8 ~Ye~vF~~lD~DgDGrISG~Ea~~ff~~ 35 (1123)
.|+.+|+.+|.|+||+|+.+|++.+|.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3677788888888888888888877773
No 184
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.69 E-value=0.61 Score=48.77 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC-CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGS-ADGLLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~-g~~-~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
+++...+..+..++..|...+.+...++..+.++++ +|. ....|-.-++....++++|++.+.+|-
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~ 165 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELE 165 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444442 222 334444445555555666666555443
No 185
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.67 E-value=0.2 Score=63.25 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 642 GKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 642 R~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
..+++.+......|+.++.++|+.++.++.++..|+.+|.+-+
T Consensus 651 E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 651 ETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333355566666666677777777777777777777655
No 186
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.65 E-value=0.013 Score=44.42 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=22.8
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHh
Q 001211 408 KYSKVFMEVDTDRDGRITGEQARNLFMS 435 (1123)
Q Consensus 408 kY~~IF~slDkD~DG~ISG~Ear~~F~k 435 (1123)
+|+.+|..+|+|++|+|+.+|++.+|.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4788899999999999999999888873
No 187
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.65 E-value=0.011 Score=45.17 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 001211 442 VLKQVWDLSDQDSDSMLSLREFCFALY 468 (1123)
Q Consensus 442 ~L~qIW~LADiDnDG~LdkdEF~IAMh 468 (1123)
+|.++.+..|.|+||+|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 356677777777777777777777664
No 188
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.65 E-value=0.14 Score=59.88 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=28.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 614 VLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 614 l~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
...|.+.+++|-.++++++........|+++..-+....+.|...++..|..|+++|+|..+|.++..
T Consensus 5 ~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 5 YSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333333333333333333333334444444444444444444444444444
No 189
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.62 E-value=0.39 Score=58.35 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 001211 661 IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1123)
.+...|+++..+..+.+.+...++ .+...+++.+.++...+..++..|.
T Consensus 369 ~l~~~Lqql~~Eae~Ak~ea~~~~---~E~~~~k~E~e~~ka~i~t~E~rL~ 417 (522)
T PF05701_consen 369 ELPKALQQLSSEAEEAKKEAEEAK---EEVEKAKEEAEQTKAAIKTAEERLE 417 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445444444444444 5555666666666666666666553
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.60 E-value=0.16 Score=53.93 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELH 677 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELe 677 (1123)
+..+..++++|...-.....+|..+..++..++.++..|..++.++.+.++.|...+..+.-.++.++.++..|+
T Consensus 97 L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 97 LVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555666666666666666666655555555555554444444433333333333333
No 191
>PF15294 Leu_zip: Leucine zipper
Probab=95.59 E-value=0.28 Score=55.38 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----------------HHHHhHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE----------------RALADRREAETLGKKYEEK 648 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~e----------------q~selkreLqsLR~kyEee 648 (1123)
|.+++..|+.+.+.+++++..+..+.......|.+.+.+|+++.. +++.++..+..|..+++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 334455555555555555566666666666666666666665543 2223344444444444433
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 649 YKQV----AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 649 ~KqV----~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
..+. +.|+..|...-+.|-..|.+|..-+.+|.+.=+....-.++|+-+..-|.++.+|.+.|
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 2222 22222222333333333333333333333333233444555666666666666666655
No 192
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=0.3 Score=59.33 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=48.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQ 651 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~Kq 651 (1123)
++.....+++-|+..+..++..+.-|++=|.++...+..-++.|+.++.++.+.+-+++.|+++.++=.++
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666666666667778888888888888888888888877777777777777444444443
No 193
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.53 E-value=0.34 Score=49.83 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR 642 (1123)
.+-++|+..|+.....+....+..+.+......+..++..+..++..+..+++.|+
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333333333333333333333333333333333333
No 194
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.49 E-value=0.54 Score=58.14 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=23.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLN 625 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLn 625 (1123)
+|..+|.++|.+|..+++.+...++.++.+++++.....+...++.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555444444433333
No 195
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.45 E-value=0.41 Score=55.06 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=42.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELV-----LYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl-----~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~ 654 (1123)
.|..+|.++|.+++.++.-++++++.++....++. ..+...-.+|..++.++.+++++++++--+.++.+.+-+.
T Consensus 86 ~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~ 165 (319)
T PF09789_consen 86 EEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDA 165 (319)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776555555444443333322 1233333445556666666677776666555555544443
Q ss_pred HH
Q 001211 655 IA 656 (1123)
Q Consensus 655 LE 656 (1123)
-.
T Consensus 166 yk 167 (319)
T PF09789_consen 166 YK 167 (319)
T ss_pred HH
Confidence 33
No 196
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.45 E-value=0.4 Score=56.14 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=8.3
Q ss_pred CHHHHHHHHHhhCCCC
Q 001211 439 PREVLKQVWDLSDQDS 454 (1123)
Q Consensus 439 P~e~L~qIW~LADiDn 454 (1123)
++..+++|++-.+...
T Consensus 78 S~~v~~~Vi~~l~l~~ 93 (444)
T TIGR03017 78 SDRVAKKVVDKLKLDE 93 (444)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3455555555555443
No 197
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.44 E-value=0.53 Score=53.84 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHH
Q 001211 400 KMKPSDIQKYSKVF 413 (1123)
Q Consensus 400 ~ISpeDk~kY~~IF 413 (1123)
.+|+++...+-+.|
T Consensus 34 ~ls~~~~~~~l~y~ 47 (306)
T PF04849_consen 34 ELSPEQIEETLRYF 47 (306)
T ss_pred CCCHHHHHHHHHHH
Confidence 45666666666666
No 198
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.43 E-value=0.51 Score=60.78 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 001211 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI-------EDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 610 mQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLav-------lEa~LqdiQ~EL~ELeqeLqk 682 (1123)
+.+++..-..++..+.+..+++.++.+.++.|+-++-+.-...+.++.-+.. +|..|+.+|..++...+-|++
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~ 1679 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEK 1679 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444566677788888888888888888877666655555544332 233444444444433333332
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 683 MERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 683 lq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
-- ..+..-++||+.+..+-.+|.-+-+++-+
T Consensus 1680 r~---~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~ 1710 (1758)
T KOG0994|consen 1680 RM---EGSQAARERAEQLRTEAEKLLGQANEKLD 1710 (1758)
T ss_pred Hh---hcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34455566677666666666555555433
No 199
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.43 E-value=0.49 Score=63.98 Aligned_cols=131 Identities=16% Similarity=0.206 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKK--------YEEKYKQVAEIASK 658 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~k--------yEee~KqV~~LEsQ 658 (1123)
.++++|+.++.+.+..+.-|++-+.+|...-+.|..+|.-+.++...=++..+.|..+ |+.-...|..|+..
T Consensus 1243 ~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1243 EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554444444444444444 22223333334433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 659 LTIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLq-klq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
|...|..+.++..++..|+..++ ++..-..+-..|.+++.++..-...|..++.|.|+.
T Consensus 1323 l~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1323 LEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333332222 011001233455566666666666666666665554
No 200
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.39 E-value=0.59 Score=59.31 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRC-------DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKME 675 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsra-------eqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~E 675 (1123)
+..+.++|+.+...-..+ ...|.....+++-+.-+|..||.++++.-.++...+.+|..++..+...+.+|.+
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~ 382 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444433333 3334444556666777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 676 LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 676 LeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
|...+...+ .+...||.+|+.+...|.+=.++|
T Consensus 383 l~d~~d~~e---~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 383 LRDMLDKKE---RKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777666 455555666555555555444444
No 201
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.39 E-value=0.22 Score=60.78 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhH
Q 001211 623 RLNEITERALADRREAETLGKKYEEKYK--------QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGSADGLL 693 (1123)
Q Consensus 623 eLne~~eq~selkreLqsLR~kyEee~K--------qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~-g~~~n~~L 693 (1123)
+|.....++-.++++++.|+..+..... +++.+...|.-.|.....+-..++.+++.+++... -..+-..|
T Consensus 243 eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~l 322 (629)
T KOG0963|consen 243 ELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISAL 322 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544332221 12222222333333333333444444444432220 01223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCCcCCCcccccccch
Q 001211 694 QVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWD 746 (1123)
Q Consensus 694 qer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~ 746 (1123)
.........+|++|+++|+.|.--=-||-.|.++-++=||=. |.|-+||
T Consensus 323 e~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~s----e~a~~~~ 371 (629)
T KOG0963|consen 323 EKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDS----EEANDED 371 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCc----ccccccc
Confidence 455556667788888888888766678999999999888633 5677776
No 202
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.4 Score=60.98 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA-------SKLT-------IEDAKFRE 668 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE-------sQLa-------vlEa~Lqd 668 (1123)
...|..+++.....-.+...++.++......++.+.+.|.+++.+..++.-.|+ .|++ .+.+.|+.
T Consensus 253 s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~ 332 (1200)
T KOG0964|consen 253 SEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQK 332 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHH
Confidence 444444444444444444444555554444444455555555555555443333 3332 23455777
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001211 669 LQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1123)
Q Consensus 669 iQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgv 720 (1123)
+..++.+-+.+|.+++ -.-..|++...+.+..|..|+.+.++.-.+-|-
T Consensus 333 ~~~ki~e~~~EL~~I~---Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr 381 (1200)
T KOG0964|consen 333 VKDKIEEKKDELSKIE---PKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGR 381 (1200)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777887777 677778888888888888888888775555443
No 203
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.38 E-value=0.65 Score=50.82 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---h-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 662 EDAKFRELQERKMELHQAIVNME---R-GGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklq---~-g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
+++.+.-++.++..|+.++...- . ....-..++.|+.+++.++..|+..|+++...
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444100 0 00113456777777888888888887775543
No 204
>PRK01156 chromosome segregation protein; Provisional
Probab=95.36 E-value=0.51 Score=60.31 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001211 692 LLQVRADRIQSDLEELLKALTERCKKHG 719 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~k~lg 719 (1123)
.|++++..++.++.+|...+.+.-+.+|
T Consensus 420 ~l~~~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 420 DISSKVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444333
No 205
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.35 E-value=0.93 Score=57.47 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=25.8
Q ss_pred hhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhhHHH
Q 001211 584 TAGKKVDEREKVILDSREK----------IEFYRSKMQELVLYKSRCDNRLNEI 627 (1123)
Q Consensus 584 dL~keLAnLenQied~~Ek----------~~~lrsQmQELl~yKsraeqeLne~ 627 (1123)
+|+.+|.+|..+++-++-+ .+..+=|+++|+.+|++..+....+
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~L 281 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADL 281 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566665555554422 5566667777777777775444433
No 206
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.33 E-value=0.35 Score=53.19 Aligned_cols=6 Identities=33% Similarity=0.989 Sum_probs=2.6
Q ss_pred hhhccc
Q 001211 749 WDKFED 754 (1123)
Q Consensus 749 wd~~~d 754 (1123)
|..+.+
T Consensus 214 W~~l~~ 219 (251)
T PF11932_consen 214 WQWLPD 219 (251)
T ss_pred CeECCH
Confidence 444433
No 207
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.33 E-value=0.52 Score=52.40 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 617 KSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 617 KsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
|.+.+..-.+.-.+++.+++++..+++-+++..|-|.+||+.-.++
T Consensus 79 Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 79 KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3333434444445566677777777777777777777777653333
No 208
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.31 E-value=0.019 Score=42.37 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 001211 10 ESFFRRADLDGDGRISGAEAVAFF 33 (1123)
Q Consensus 10 e~vF~~lD~DgDGrISG~Ea~~ff 33 (1123)
+++|+.+|.|+||+|+.+|+.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 567888888888888888877753
No 209
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.28 E-value=0.61 Score=59.18 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=47.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQ 651 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~Kq 651 (1123)
+.+-|..++..|+.+++.....++-.+.+++.++..+++...+|..++++.-...++|..|.++|++-..+
T Consensus 337 ~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 337 EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555556777777777888888877778777777776677777777775544433
No 210
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.27 E-value=0.36 Score=54.80 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=32.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV 652 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV 652 (1123)
+.++..+-.+|.+++...+++.+-+..+..++.......-.+.+++.+++.+++.+-..+.+++++-++.+
T Consensus 22 ~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 22 IEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333445555555555555555555555555444444444444444444444444433333333333
No 211
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.26 E-value=0.57 Score=53.30 Aligned_cols=91 Identities=24% Similarity=0.281 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~L 666 (1123)
.++.+|..++..++.+...|+.+.++|..+.+.|.++|.. .-..+..||++.++.-.++-++..++..+...+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k-------~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIK-------LFEEADELRKEADELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444555445555555666666666655555444444 444555555555555555555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001211 667 RELQERKMELHQAIVNME 684 (1123)
Q Consensus 667 qdiQ~EL~ELeqeLqklq 684 (1123)
..++.+|.+|+..|..++
T Consensus 231 ~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 231 RNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666555
No 212
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.26 E-value=0.43 Score=58.75 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRC--DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsra--eqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
..+.|+.|+..+--+...-+.+|.+++-|...-... -++|.+-.+.|..+..+=+.|.+++-.+-..|+.|..++...
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~ 486 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA 486 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 335555665555442222245555554332221111 123444445555444444445555544444555555444333
Q ss_pred H
Q 001211 663 D 663 (1123)
Q Consensus 663 E 663 (1123)
|
T Consensus 487 e 487 (961)
T KOG4673|consen 487 E 487 (961)
T ss_pred h
Confidence 3
No 213
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.25 E-value=0.5 Score=60.44 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001211 607 RSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (1123)
Q Consensus 607 rsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g 686 (1123)
+.++.++..-+.++-.+|+.+.+.+..+....+.|+.+..+-.++++.+...|...-..++.+.+++.+.++++.+++
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~-- 324 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKK-- 324 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344445555555566666666666666666666666666666666666666666667778888888888888888888
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 687 GSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 687 ~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
.++..||.+++..+..+..+++-|.+.+..
T Consensus 325 -~~le~lk~~~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 325 -NKLESLKKAAEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999988776654
No 214
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.24 E-value=0.048 Score=55.89 Aligned_cols=72 Identities=17% Similarity=0.360 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCC--CHHHHHHHHHhhCCCCC----CCcCHHHHHHHHHHHHHHh
Q 001211 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRL--PREVLKQVWDLSDQDSD----SMLSLREFCFALYLMERYR 474 (1123)
Q Consensus 401 ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgL--P~e~L~qIW~LADiDnD----G~LdkdEF~IAMhLI~~~~ 474 (1123)
.+++....+++||.-+|+.+||+|++.++-.+|+..|+ .+.++.+ .|-..+.+ -+|++++|+-++.-|...+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k--~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLK--VLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHH--HHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 46778899999999999999999999999999998865 4455555 45555555 7999999987766555443
No 215
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.21 E-value=0.61 Score=57.69 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=26.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~ 628 (1123)
..+-.++|.+|+.++.++..++..+...++.|.....+...++.+..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~ 369 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKE 369 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777888888855555555555555555554444444444333
No 216
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.20 E-value=0.26 Score=53.33 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
..|++|+.+.+.....-. .+|-.++..+..++ ..+...+.++..++..++.+..+|...+.+|+..
T Consensus 13 sLLKqQLke~q~E~~~K~-------~Eiv~Lr~ql~e~~-------~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQKD-------SEIVSLRAQLRELR-------AELRNKESQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred HHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 777777777666544332 33334666666666 6667778888888888899999999999999988
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 684 ERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1123)
Q Consensus 684 q~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1123)
+ .+-..|++.+..+..++.+|...|...
T Consensus 79 ~---~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 79 K---NEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred h---CHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 8 888899999999999999999998775
No 217
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.27 Score=61.44 Aligned_cols=29 Identities=21% Similarity=0.199 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001211 622 NRLNEITERALADRREAETLGKKYEEKYK 650 (1123)
Q Consensus 622 qeLne~~eq~selkreLqsLR~kyEee~K 650 (1123)
++|+....+...+.++...|.+++++...
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~ 765 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNKKNA 765 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555555555555555555555544333
No 218
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.16 E-value=0.6 Score=57.99 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 001211 706 ELLKALTE 713 (1123)
Q Consensus 706 eL~kqL~E 713 (1123)
.|++.+++
T Consensus 506 ~le~~~~~ 513 (650)
T TIGR03185 506 QLEEEITK 513 (650)
T ss_pred HHHHHHHH
Confidence 34444444
No 219
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.15 E-value=0.52 Score=52.79 Aligned_cols=125 Identities=15% Similarity=0.239 Sum_probs=70.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREK------------------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETL 641 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek------------------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsL 641 (1123)
.....|.++|..|+.+|.+..+. |+.|..|+++|.. +++++|.++.+.. +..+..|
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~---~qqdEldel~e~~---~~el~~l 154 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD---SQQDELDELNEMR---QMELASL 154 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHH
Confidence 34566777777777777665544 5555555555543 4444555554332 4455556
Q ss_pred HHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 642 GKKYEEKYKQV-AEIAS-KLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 642 R~kyEee~KqV-~~LEs-QLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
..+++++.++| ..+-. .+.-....|.+.--+-+.+..+|..-+ .....|++.|..+.+++++|..+..+
T Consensus 155 ~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r---e~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 155 SRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR---EEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65555555544 11221 122223333333344555566666555 66667778888888888888887754
No 220
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=1.5 Score=49.37 Aligned_cols=58 Identities=9% Similarity=0.203 Sum_probs=33.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRRE 637 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkre 637 (1123)
.+..++..+|..|.++++++..+++.++.++.++...-.+.++++..++++|.+.+..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666656666666555555555555555555555544333
No 221
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.12 E-value=0.23 Score=53.87 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001211 696 RADRIQSDLEELLKAL 711 (1123)
Q Consensus 696 r~~~in~el~eL~kqL 711 (1123)
+++.++.+++.++..+
T Consensus 154 ~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 154 KVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 222
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=95.10 E-value=0.63 Score=54.58 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001211 694 QVRADRIQSDLEELLKALTERCKKHG 719 (1123)
Q Consensus 694 qer~~~in~el~eL~kqL~E~~k~lg 719 (1123)
++++..+++++.+++.+|.+....+.
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888888888877666553
No 223
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.10 E-value=0.8 Score=60.82 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 660 TIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
...+..|+.+..++..|.++++++.
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666555
No 224
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.09 E-value=0.58 Score=46.19 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 001211 613 LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGL 692 (1123)
Q Consensus 613 Ll~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~ 692 (1123)
|...+...+++|..+...+...+.....|-++-++=...+..|++|-......+.++|.++.++...|...+ ..--.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK---~ak~~ 83 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK---QAKLE 83 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333444444444444433333344444443222222244445555555556667777777777777776544 22234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001211 693 LQVRADRIQSDLEELLKALTER 714 (1123)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E~ 714 (1123)
|+.|+...+.+.+.|+-.|.|.
T Consensus 84 l~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 84 LESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHhh
Confidence 7777888888888888888775
No 225
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.024 Score=64.38 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~S--GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~L 69 (1123)
......+|.++|.++||.|+..|++.+++.+ ..-.....+-|...|.++||+|+.+|+..++.-
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 4567889999999999999999999999987 466777888899999999999999999888764
No 226
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.06 E-value=0.08 Score=55.14 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=56.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001211 8 QFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1123)
Q Consensus 8 ~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~ 68 (1123)
.....|..+|.+++|+|..+.++.+|..-| +.++++.++|+.+=+|..|.++..+|+.+|.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 566789999999999999999999999975 9999999999999999999999999988765
No 227
>PRK11519 tyrosine kinase; Provisional
Probab=95.04 E-value=0.51 Score=59.28 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~ 628 (1123)
.+++++|+++|...-..++.+|++-+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766666654
No 228
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.04 E-value=1.1 Score=53.15 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001211 668 ELQERKMELHQAIVNME 684 (1123)
Q Consensus 668 diQ~EL~ELeqeLqklq 684 (1123)
.+.+++..|.+.+..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 158 ARAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 229
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.01 E-value=1.1 Score=55.03 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
++.++.+++++...-.+. +|.++.+...++...|..|-..++.+++....++..+..+..+|..++.+..+|..++..
T Consensus 254 i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~ 331 (560)
T PF06160_consen 254 IEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELER 331 (560)
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665554 366666777777777777777777888877888888888888888888888888888887
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 683 MERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 683 lq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
+++.=.-+..--++++.++.+|..|.+++...++.
T Consensus 332 v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~ 366 (560)
T PF06160_consen 332 VSQSYTLNHNELEIVRELEKQLKELEKRYEDLEER 366 (560)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77644444434445555555555555555554444
No 230
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.98 E-value=0.29 Score=57.60 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 001211 671 ERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 671 ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kq 710 (1123)
.+..+|++++..|+ .+|..|+++=.++|..+--|..|
T Consensus 403 aRe~eleqevkrLr---q~nr~l~eqneelngtilTls~q 439 (502)
T KOG0982|consen 403 AREIELEQEVKRLR---QPNRILSEQNEELNGTILTLSTQ 439 (502)
T ss_pred HHHHHHHHHHHHhc---cccchhhhhhhhhhhhhhhHHHH
Confidence 45678899999999 88899998888887776555444
No 231
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.96 E-value=0.41 Score=60.23 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITE 629 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~e 629 (1123)
.+++.+|+.+|...-..++++|++-+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777666666666666666553
No 232
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.95 E-value=0.82 Score=59.06 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA-------SKL 659 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE-------sQL 659 (1123)
...++|+.+-...+++.+.++.+++.++.-...++.-+.+.+.-+....+++...+..+++........| ++|
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~ 1621 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQL 1621 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655555555555544444444444444333333333333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
..+|..+..+|.+..+--.+-..++ +.-...|+++.+....++.|++++
T Consensus 1622 ~eL~~~~e~lk~~~~qns~~A~~a~---~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1622 GELETRMEELKHKAAQNSAEAKQAE---KTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333322222333 344455555555555555444443
No 233
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.94 E-value=0.011 Score=58.04 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCcCHHHHHH
Q 001211 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCF 465 (1123)
Q Consensus 402 SpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kSgLP~e~L~qIW~LADiDnDG~LdkdEF~I 465 (1123)
....+....=.|.++|+|+||+|+..|++.+.....-++.=+....+-||+|+||.|++.|++.
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445566667799999999999999999988765666666689999999999999999999975
No 234
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.94 E-value=1 Score=51.42 Aligned_cols=28 Identities=7% Similarity=0.009 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQA 679 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1123)
+++.+.++..++..|+.++.++..++..
T Consensus 154 ~~~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 154 VDQARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 235
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.47 Score=59.46 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyE 646 (1123)
++.++.+.++|.....+.+.++.+..++++++++++.-|+.++.
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555566666666666666666666666677777777776665
No 236
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.85 E-value=0.58 Score=57.25 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHH
Q 001211 632 LADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFREL-QERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEE 706 (1123)
Q Consensus 632 selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lqdi-Q~EL~ELeqeLq----klq~g~~~n~~Lqer~~~in~el~e 706 (1123)
-.+-.+|.+|+-+|--.-|+.-+-|.++...|+-++.+ |.+..++.+|-. +++.-+.+-+.|||+..+-|+|+..
T Consensus 177 lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 177 LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR 256 (861)
T ss_pred hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence 33444444444333333344334444444444443333 233334333322 6676778999999999999999999
Q ss_pred HHHHHHHHHHHhCc
Q 001211 707 LLKALTERCKKHGI 720 (1123)
Q Consensus 707 L~kqL~E~~k~lgv 720 (1123)
|..+|--+....|+
T Consensus 257 l~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 257 LLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHHHHHhhccc
Confidence 99999877777776
No 237
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=94.85 E-value=0.09 Score=54.78 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=56.9
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 001211 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1123)
Q Consensus 407 ~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMh 468 (1123)
.-....|..+|.++.|+|..+.+|++|... ++..++++.+|+.+=+|..|.|++.+||.+|.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 446788999999999999999999999976 79999999999999999999999999998764
No 238
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.84 E-value=0.21 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHH
Q 001211 606 YRSKMQELVLYKSRCDNRLNEIT 628 (1123)
Q Consensus 606 lrsQmQELl~yKsraeqeLne~~ 628 (1123)
.+.++.+|+.+..+..++|+++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 239
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.84 E-value=0.46 Score=59.92 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1123)
Q Consensus 587 keLAnLenQied-~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQL 659 (1123)
+-++-|+.+|.. ....-..++.....|...+.++-++|.++.+++..++...+.|+.+|++-.+.-+.|..++
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556533 2111344445555555555555556666666666565555666655555555555555544
No 240
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.82 E-value=0.93 Score=57.57 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001211 587 KKVDEREKVILDSREK-----------IEFYRSKMQELVLYKSRCDNRLNEITERAL 632 (1123)
Q Consensus 587 keLAnLenQied~~Ek-----------~~~lrsQmQELl~yKsraeqeLne~~eq~s 632 (1123)
.++..|..|++....+ -.-|+.=|++|..-+..+++++.++-.+++
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3556666666664322 345666677777777777777766654443
No 241
>PRK11519 tyrosine kinase; Provisional
Probab=94.80 E-value=0.2 Score=62.87 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E 713 (1123)
.|+..++..+.-.+.|..+++|
T Consensus 374 ~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 374 RLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455544444
No 242
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.73 E-value=2 Score=49.37 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001211 693 LQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E 713 (1123)
+--+|..+..++..|..||..
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555533
No 243
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=94.73 E-value=1.6 Score=50.13 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=81.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 583 tdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
.+|.-+|++|+..|-+.-- ..-+|-+.|+.+.-++.-++..+.++...+..|+++|.++.++++.+...+..+
T Consensus 80 r~lk~~l~evEekyrkAMv-------~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMV-------SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666633111 112466677777667777777777777888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------------------------------HhhcCCCchhHHHHHHHHHHHHHH
Q 001211 663 DAKFRELQERKMELHQAIVN------------------------------------MERGGSADGLLQVRADRIQSDLEE 706 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqk------------------------------------lq~g~~~n~~Lqer~~~in~el~e 706 (1123)
...+..++.+|.+..+-|++ ++ ..-++.|-+|++.+-.+-++
T Consensus 153 ~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~--~aG~g~LDvRLkKl~~eke~ 230 (302)
T PF09738_consen 153 REELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLE--SAGDGSLDVRLKKLADEKEE 230 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhc--ccCCCCHHHHHHHHHHHHHH
Confidence 77888888888777666551 11 11267788888888777777
Q ss_pred HHHHHHH
Q 001211 707 LLKALTE 713 (1123)
Q Consensus 707 L~kqL~E 713 (1123)
|..|++.
T Consensus 231 L~~qv~k 237 (302)
T PF09738_consen 231 LLEQVRK 237 (302)
T ss_pred HHHHHHH
Confidence 7666544
No 244
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.70 E-value=0.8 Score=57.67 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
.|+.+++..+.-.+.|..+.+|-.
T Consensus 374 ~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 374 RLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445444444433
No 245
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.63 E-value=0.74 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 001211 690 DGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 690 n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
...-+.|...+++++.-|..++..
T Consensus 145 ~~l~~a~~~~l~ae~~~l~~~~~~ 168 (240)
T PF12795_consen 145 SPLSEAQRWLLQAELAALEAQIEM 168 (240)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 246
>PRK11281 hypothetical protein; Provisional
Probab=94.59 E-value=0.29 Score=64.14 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCc-hhHHHHHHHHHHHHHHHH
Q 001211 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMER----GGSAD-GLLQVRADRIQSDLEELL 708 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~----g~~~n-~~Lqer~~~in~el~eL~ 708 (1123)
++..+..+....++..++++.++++|..++.....+|+++.+.++.++++++ +.... ..-+.|...+++|+.-|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666655444444444444444443331 11111 123346666667766666
Q ss_pred HHHHH
Q 001211 709 KALTE 713 (1123)
Q Consensus 709 kqL~E 713 (1123)
-++.-
T Consensus 206 ~~~~~ 210 (1113)
T PRK11281 206 AQNDL 210 (1113)
T ss_pred HHHHH
Confidence 66533
No 247
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.58 E-value=0.75 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQEL 613 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQEL 613 (1123)
|..|..++...++.++.+..++.+|
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l 32 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEEL 32 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333333333
No 248
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.58 E-value=2.1 Score=45.15 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 669 LQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (1123)
Q Consensus 669 iQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1123)
++.+...++..|+++. ..+...|..+.++++.++-.+--|+
T Consensus 118 ~r~e~~~~~~ki~e~~------~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 118 IREEQAKQELKIQELN------NKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433 5566667778888888888877775
No 249
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.57 E-value=4.7 Score=43.39 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=62.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h--cCCCchhHHHHHH
Q 001211 627 ITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME------R--GGSADGLLQVRAD 698 (1123)
Q Consensus 627 ~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq------~--g~~~n~~Lqer~~ 698 (1123)
.-.++...+..+..|...|++...++..|..+|..++..|.+++.++..|.......+ . ++-........++
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~e 168 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFE 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHH
Confidence 3456666788888888888888888888888888888888888888888776655222 1 1112445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001211 699 RIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 699 ~in~el~eL~kqL~E~~k~l 718 (1123)
++...+.+++-...-+..+.
T Consensus 169 r~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 169 RMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666666665554444443
No 250
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.54 E-value=1.5 Score=48.64 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001211 693 LQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E 713 (1123)
|++++.+.+..|.+|...|+|
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666654
No 251
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.53 E-value=0.8 Score=46.11 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001211 695 VRADRIQSDLEELLK 709 (1123)
Q Consensus 695 er~~~in~el~eL~k 709 (1123)
++++.++..+++|..
T Consensus 122 ~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 122 SRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 252
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.53 E-value=0.98 Score=56.89 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHhCcccccceeeecCC
Q 001211 712 TERCKKHGIDVKSHAVIELPF 732 (1123)
Q Consensus 712 ~E~~k~lgvk~k~~~~ielp~ 732 (1123)
.||=+++.+|=-|++-|.+.-
T Consensus 167 ~EReqk~~LrkEL~~~~~~~~ 187 (717)
T PF09730_consen 167 SEREQKNALRKELDQHLNIES 187 (717)
T ss_pred HHHHHHHHHHHHHHHhcCccc
Confidence 668888888877777666544
No 253
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.53 E-value=2.1 Score=51.79 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 666 FRELQERKMELHQAIVNMERG-GSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g-~~~n~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
|+=++++|...+..+.++... ..+...|+++|.++...-..|...-...-+.|
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544421 23456777777766555555544444444443
No 254
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.94 Score=56.67 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
...++.++++..+..+-++.|+.++...++.|.+++.++.++..+|..+.
T Consensus 551 ~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 551 TQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555555555556666666666666666666554
No 255
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.47 E-value=1.7 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001211 662 EDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+|..|.++|.+-.=|+++|..+
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 256
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.46 E-value=1 Score=59.29 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 691 GLLQVRADRIQSDLEELLKALTER 714 (1123)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~ 714 (1123)
..++.|+++++.+++.|+.+++++
T Consensus 211 dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 211 ELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888773
No 257
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.45 E-value=1.1 Score=57.64 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001211 696 RADRIQSDLEELLKALTE 713 (1123)
Q Consensus 696 r~~~in~el~eL~kqL~E 713 (1123)
+++....+++++.+++..
T Consensus 727 ~~~~~~~~~~~~~~~~~~ 744 (908)
T COG0419 727 ELEELKKELEKLEKALEL 744 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444433333
No 258
>PF13514 AAA_27: AAA domain
Probab=94.40 E-value=1.4 Score=58.15 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIE-------------DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQ 701 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavl-------------Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in 701 (1123)
.+.+..++.+++...++++.++.+|..+ +..+..++..+.+.++...+.++-...-..++++++++.
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~ 821 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAE 821 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554332 234445555555444433333322244556667777777
Q ss_pred HHHHHHHHHHHHHHHHhCccc
Q 001211 702 SDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 702 ~el~eL~kqL~E~~k~lgvk~ 722 (1123)
.++..++.++.+.|...||+.
T Consensus 822 ~~l~~~~~~l~~L~~~a~~~~ 842 (1111)
T PF13514_consen 822 EELEELEAELAELLEQAGVED 842 (1111)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 777777777777777777654
No 259
>PRK11281 hypothetical protein; Provisional
Probab=94.37 E-value=0.64 Score=61.11 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE--------DAKFRELQERKME 675 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl--------Ea~LqdiQ~EL~E 675 (1123)
..+++++.+++...++.+++|.+.+.+........++.+..+.+....+.+|+.+|... ++....++.|+.-
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 33555555555555555666666666666556656666666666666666666665331 2333444455444
Q ss_pred HHHHHHHHhhcC----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 001211 676 LHQAIVNMERGG----SADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1123)
Q Consensus 676 LeqeLqklq~g~----~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k 723 (1123)
|+.++...++-- .-...+|.|.+..+.+++.++.+++..+..++-|=.
T Consensus 204 l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333211 234567788888999999999988888888776433
No 260
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.36 E-value=0.02 Score=56.18 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHH
Q 001211 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYN 65 (1123)
Q Consensus 8 ~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP~~~LaqIW~LAD~d~DG~Ldr~EF~v 65 (1123)
...=.|..+|.|+||.|+..|++.+...-.-++.-+....+.+|.|+||.|++.|+..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3444699999999999999999998776666677789999999999999999999975
No 261
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=94.33 E-value=3.4 Score=46.78 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001211 607 RSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (1123)
Q Consensus 607 rsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g 686 (1123)
...-++|-..=..+++.|.++..++.-+--++.++...|-..+.+....=..|...|+.|+..+.....|..+|++++.-
T Consensus 81 ~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k 160 (271)
T PF13805_consen 81 KAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc
Confidence 34455566666667888888888888888888888888777777766666667777777777777777888888777642
Q ss_pred CC---CchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 687 GS---ADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 687 ~~---~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
+- .-..|+.++.+...+..-.+.||.+
T Consensus 161 ~P~s~kl~~LeqELvraEae~lvaEAqL~n 190 (271)
T PF13805_consen 161 DPQSPKLVVLEQELVRAEAENLVAEAQLSN 190 (271)
T ss_dssp -TTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22 2245566666655555555555533
No 262
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.28 E-value=1.6 Score=56.11 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 611 QELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
++|....+..++.|..+..++..++.++..|+.++.....++..++++|..+.+.++++-.++..+.....
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 33444444444444444445555555555555555555555555555555555555555544444433333
No 263
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.27 E-value=1.8 Score=58.39 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.2
Q ss_pred CCcCHHHHHHHHHHHHHHh
Q 001211 456 SMLSLREFCFALYLMERYR 474 (1123)
Q Consensus 456 G~LdkdEF~IAMhLI~~~~ 474 (1123)
|.++.+.|.-.++++.+.+
T Consensus 175 G~~~~~ry~~l~~~l~~lr 193 (1353)
T TIGR02680 175 GFLGEERYAALLDLLIQLR 193 (1353)
T ss_pred CCCChHHHHHHHHHHHHHc
Confidence 6677788888888776653
No 264
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.27 E-value=1.5 Score=44.06 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQ 670 (1123)
Q Consensus 630 q~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ 670 (1123)
++.+++.+++.|..+|+.-+.-+.+-.+++..+++.+.|++
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 265
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=94.25 E-value=0.98 Score=53.43 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHh
Q 001211 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMS 435 (1123)
Q Consensus 404 eDk~kY~~IF~slDkD~DG~ISG~Ear~~F~k 435 (1123)
++...|-++-.+.|+.. ..-++.+|.+
T Consensus 29 ~nv~eyLkl~~~aDk~Q-----~~rIkq~Fek 55 (395)
T PF10267_consen 29 ENVAEYLKLASNADKQQ-----AARIKQVFEK 55 (395)
T ss_pred hhHHHHHHHhhhccHHH-----HHHHHHHHHH
Confidence 34556666666665432 3345556653
No 266
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.25 E-value=1.4 Score=54.86 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=62.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH----HHH
Q 001211 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS----DLE 705 (1123)
Q Consensus 630 q~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~----el~ 705 (1123)
+...+....+.|+.++++..+.++.++.||..++..++....+-..|..+|...+ ..-+..||+|..++.+ .|.
T Consensus 515 E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ--~~y~~alqekvsevEsrl~E~L~ 592 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQ--EVYERALQEKVSEVESRLREQLS 592 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566667778888888888899999999999999999999999999988665 1245578888876654 567
Q ss_pred HHHHHHHH
Q 001211 706 ELLKALTE 713 (1123)
Q Consensus 706 eL~kqL~E 713 (1123)
++++.|||
T Consensus 593 ~~E~rLNe 600 (739)
T PF07111_consen 593 EMEKRLNE 600 (739)
T ss_pred HHHHHHHH
Confidence 78888877
No 267
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=1.8 Score=54.38 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
..++..+...++...+.+.++...+..+...+...+.+|.+|+..+..+. .+-..++....+++.++..|...|
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~---~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE---LELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333 333333334444444444444333
No 268
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.22 E-value=1.6 Score=51.51 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=69.7
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQL 659 (1123)
+.+.+|..+|++-+.+++.+.++...++...+-+....+..+.+|++++++...++.+.-..+..+.-..+++
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~------- 85 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDV------- 85 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3456677778888888877777766677777777777777777777777666655444444443333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccce
Q 001211 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHA 726 (1123)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~ 726 (1123)
..+|+.--..++|+.+|+++-.+.. ...-.|++.+++.+ ...+|++.-+.+|+|-.--+
T Consensus 86 ~~~en~~~r~~~eir~~~~q~~e~~---n~~~~l~~~~~~~r-----~~e~la~~~~~l~~~~~r~~ 144 (459)
T KOG0288|consen 86 LIAENLRIRSLNEIRELREQKAEFE---NAELALREMRRKMR-----IAERLAEALKDLGLKDLRRQ 144 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc---cchhhHHHHHHHHH-----HHHHHHHHhhhcchhhhhhh
Confidence 2233332233444444444444433 22233343333221 22344455555665544333
No 269
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.19 E-value=1.4 Score=59.79 Aligned_cols=123 Identities=11% Similarity=0.170 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001211 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCD-------NRLNEITERALADRREAETLGKKYEEKYKQVAEIASK-- 658 (1123)
Q Consensus 588 eLAnLenQied~~Ek~~~lrsQmQELl~yKsrae-------qeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQ-- 658 (1123)
+|..|+..+.++.+++..++.+.-+|+....+|. -++..+..++.-+..+..-|..++..+.+++..++.+
T Consensus 137 ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s 216 (1822)
T KOG4674|consen 137 ELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHS 216 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444443333444444444444444443332 2223333334434444444565666666666666665
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 659 --LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 659 --LavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
+..++..|.+++..+.+|+..+.-++ ..+..|..+|..++.++-+|..+...
T Consensus 217 ~~~~~L~~~L~~~~~~~~~~q~~~~~l~---q~~~eLs~~ie~~~~~ls~~k~t~~s 270 (1822)
T KOG4674|consen 217 IEVEQLEEKLSDLKESLAELQEKNKSLK---QQNEELSKKIESLNLELSKLKDTAES 270 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 56667777777777777777777777 77777777777777777777666644
No 270
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=94.18 E-value=0.32 Score=56.11 Aligned_cols=88 Identities=14% Similarity=0.248 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001211 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKK-YEEKYKQVAEIASKLTIEDA 664 (1123)
Q Consensus 586 ~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~k-yEee~KqV~~LEsQLavlEa 664 (1123)
.+|..+|++++.+++|.-..|..|++|+..-...|...++.-+.+..++...++.+++. -.++. +.+..+|.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~-------~~i~~L~~ 75 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEER-------ELIEKLEE 75 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHH-------HHHHHHHH
Confidence 35677888888888888899999999999999999555555444444444444444321 11122 23344444
Q ss_pred HHHHHHHHHHHHHHHH
Q 001211 665 KFRELQERKMELHQAI 680 (1123)
Q Consensus 665 ~LqdiQ~EL~ELeqeL 680 (1123)
.++.++..+.++++.|
T Consensus 76 ~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 76 DIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHhhHHHHHhhC
Confidence 4555555555555333
No 271
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=94.16 E-value=0.3 Score=58.92 Aligned_cols=100 Identities=11% Similarity=0.153 Sum_probs=44.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLav 661 (1123)
+.+|+++|..|+.++.+++.+.+.++.++.-|..........+.. .+......+..|.+-.+-..+++.+|..++..
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKD---SAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666555555555555555554443222111100 00001223333442223333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001211 662 EDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
++..+++++.+|.+|+.+|.++.
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555444
No 272
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=94.15 E-value=2 Score=40.87 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001211 703 DLEELLKALTERCK 716 (1123)
Q Consensus 703 el~eL~kqL~E~~k 716 (1123)
++=...+.+.++|.
T Consensus 109 e~L~~~~~i~~rl~ 122 (127)
T smart00502 109 ELLLSKKLIIERLQ 122 (127)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555443
No 273
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.14 E-value=1.8 Score=52.85 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 611 QELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
+++..++.+.++++++-..++.+.+..|..-...++++.+.++.-+.+|...+..|.+++.++.++++++.
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555554444444433333333333333334444444444444444444444444444444444444
No 274
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.13 E-value=0.1 Score=68.07 Aligned_cols=67 Identities=19% Similarity=0.468 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc---------CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 001211 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW---------RLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1123)
Q Consensus 401 ISpeDk~kY~~IF~slDkD~DG~ISG~Ear~~F~kS---------gLP~e~L~qIW~LADiDnDG~LdkdEF~IAM 467 (1123)
+|.+....|.-+|..+|+++.|.|+..+.+.+|+.. |-|...++.|.+++|++.+|+|++.+|+.+|
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 688999999999999999999999999999999864 3355689999999999999999999999877
No 275
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=94.12 E-value=0.047 Score=62.46 Aligned_cols=61 Identities=8% Similarity=0.180 Sum_probs=3.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 624 Lne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
|+++...+.+.+-+|..|..++......|..|+..|+.+-..+.+.+..|..|+..+..+.
T Consensus 65 L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~ls 125 (326)
T PF04582_consen 65 LQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALS 125 (326)
T ss_dssp -----------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhh
Confidence 4444433444444444444333333344444444444444444444444444444444433
No 276
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.12 E-value=1.4 Score=55.51 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 001211 587 KKVDEREKVILD 598 (1123)
Q Consensus 587 keLAnLenQied 598 (1123)
.+|.+|++++..
T Consensus 34 ~~i~~l~~elk~ 45 (717)
T PF09730_consen 34 QRILELENELKQ 45 (717)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 277
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.11 E-value=1.7 Score=55.86 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHhCcccc
Q 001211 669 LQERKMELHQAIVNMERGGSADGLLQVRADRIQS--DLEELLKALTERCKKHGIDVK 723 (1123)
Q Consensus 669 iQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~--el~eL~kqL~E~~k~lgvk~k 723 (1123)
+.+++.+|++.+-.++ .+|+.|..+|..+-. +-..+-.|.++.-.++..+.+
T Consensus 528 ~~~k~eeLe~~l~~lE---~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elk 581 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLE---EENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELK 581 (1195)
T ss_pred HHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444555555555 666666666666655 555555566666666665543
No 278
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.092 Score=61.52 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=58.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001211 7 DQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1123)
Q Consensus 7 ~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LVa 71 (1123)
.....+|..+|.+.||+|..+|....|+..| |..+.+.+|++.+|.++++.|+.+||-.-|-|.-
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 3455789999999999999999999999985 9999999999999999999999999998887765
No 279
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.04 E-value=1.7 Score=54.05 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 637 EAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 637 eLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
.++.|..++++-.+++++++.++..++..+..++.++.+|+.+|.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333444444444444444444444444444444433
No 280
>PRK10698 phage shock protein PspA; Provisional
Probab=94.04 E-value=4.4 Score=44.46 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 633 elkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
.....+..|+.+|+.....++.|+.+|..++..|.+.+.+...|-+..+
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666655554444
No 281
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.03 E-value=5 Score=44.38 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=66.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhh-----hhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQEL-------VLYKSRC-----DNRLNEITERALADRREAETLGKKYEE 647 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQEL-------l~yKsra-----eqeLne~~eq~selkreLqsLR~kyEe 647 (1123)
+.+.+.+..|.+++..+.++...-..+..++.++ +.+...+ +.-.++.-+++..++..+..++..|++
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666442222333333333 3322222 222344456777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 648 e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
.-..++.|+.+|..+|..+.+++.++..|.+...
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888898888888888888888877766
No 282
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.00 E-value=3.2 Score=48.89 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQL 659 (1123)
...|+....+++.-|.+.+.+|..+..++...+++|..|++.+..+..-++-.+..|
T Consensus 246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566788888888888888888888888888888888888877777777666666554
No 283
>PF13514 AAA_27: AAA domain
Probab=93.96 E-value=1.5 Score=57.81 Aligned_cols=59 Identities=27% Similarity=0.460 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kq 710 (1123)
.+..++.++..++..+..+..++.+++.+|..+. ++..-..|..++.....+|.++.++
T Consensus 897 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~-~~~~~a~l~~e~e~~~a~l~~~~~~ 955 (1111)
T PF13514_consen 897 ELEELEEELEELEEELEELQEERAELEQELEALE-GDDDAAELEQEREEAEAELEELAEE 955 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666666666666666665 3333345555555555555554443
No 284
>PRK10869 recombination and repair protein; Provisional
Probab=93.95 E-value=1.3 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhCc-ccccceeee
Q 001211 703 DLEELLKALTERCKKHGI-DVKSHAVIE 729 (1123)
Q Consensus 703 el~eL~kqL~E~~k~lgv-k~k~~~~ie 729 (1123)
-...|++.+.+..+.||+ +++..+.|.
T Consensus 371 aA~~l~~~v~~~L~~L~m~~a~f~v~~~ 398 (553)
T PRK10869 371 YAKELAQLITESMHELSMPHGKFTIDVK 398 (553)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 356788888888888888 555555553
No 285
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.93 E-value=1.4 Score=57.57 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=11.2
Q ss_pred cccCCCCCCCCCcccccc
Q 001211 280 LVPSGNGFASDSVFGGDV 297 (1123)
Q Consensus 280 ~~~~gnG~~s~s~f~~d~ 297 (1123)
.-++.+|+.-=-.||.-+
T Consensus 206 vLld~~GHikLADFGsCl 223 (1317)
T KOG0612|consen 206 VLLDKSGHIKLADFGSCL 223 (1317)
T ss_pred eEecccCcEeeccchhHH
Confidence 355677776656677544
No 286
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.93 E-value=2.5 Score=57.10 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001211 695 VRADRIQSDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 695 er~~~in~el~eL~kqL~E~~k~lgvk~ 722 (1123)
.|+.....++++....|..-....|+-.
T Consensus 375 ~r~~~~~~~l~~~~~el~~~a~~~~~~~ 402 (1353)
T TIGR02680 375 GRLDDAERELRAAREQLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4444444444444444444455555444
No 287
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=93.87 E-value=3.5 Score=38.68 Aligned_cols=37 Identities=8% Similarity=0.229 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQ 670 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ 670 (1123)
...-+..|...+......+..++.++..+...|..+.
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~ 86 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEAR 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444444444444433333333
No 288
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.87 E-value=1.7 Score=49.77 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=73.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT- 660 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa- 660 (1123)
+..|.++++++-.+.-....+...++.++.+|...+.....+|+.+. ..+..|+.|..+++..-+.+.+--.++.
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~----~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAI----LAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666555555545567788888888888887777766554 3456666666566555555543222221
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 001211 661 -----------IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (1123)
Q Consensus 661 -----------vlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~ 705 (1123)
-....|.+|+.++.+-...-.++. .+|..|++++..|-.+.+
T Consensus 100 eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~---~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 100 EEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLR---EENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 124457777777777666666666 788888888887766555
No 289
>PF15556 Zwint: ZW10 interactor
Probab=93.80 E-value=9 Score=41.90 Aligned_cols=72 Identities=18% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeec
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIEL 730 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~iel 730 (1123)
-+..|..-.+.........++||..|+++|..++ .++.+-+..|..-+.=|+=.|.+-|--.-++.+.|+
T Consensus 135 ~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lk----------qQa~qeqdKLQR~qtfLqLl~tLq~k~~~~eae~e~ 204 (252)
T PF15556_consen 135 HLQHLAEVSAEVRERQTGTQQELERLYQELGTLK----------QQAGQEQDKLQRHQTFLQLLYTLQGKLLFPEAEAEL 204 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccc
Confidence 3344444444555556666777777777776555 444444444444445556667777777777777777
Q ss_pred CC
Q 001211 731 PF 732 (1123)
Q Consensus 731 p~ 732 (1123)
|-
T Consensus 205 ~~ 206 (252)
T PF15556_consen 205 PQ 206 (252)
T ss_pred hh
Confidence 74
No 290
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.78 E-value=3.2 Score=49.78 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhcCCCchh----HHHHHHHH
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAK----------FRELQERKMELHQAIVNMERGGSADGL----LQVRADRI 700 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavlEa~----------LqdiQ~EL~ELeqeLqklq~g~~~n~~----Lqer~~~i 700 (1123)
-..++.|..+|+.+-.+++.|+++...+... +...-+|..+|-.+|.++. -+-.. +++|-..+
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~---~~~~~L~k~V~~~~lea 405 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKIN---IQSDKLTKSVKSRKLEA 405 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHhHHHHH
Confidence 3344445555555555555555554333222 2233344445555555443 22222 23344444
Q ss_pred HHHHHHHHHHHHH---HHHHhCcc----------cccceeeecCCCcCCCcccccccch
Q 001211 701 QSDLEELLKALTE---RCKKHGID----------VKSHAVIELPFGWQPGIQEGAGVWD 746 (1123)
Q Consensus 701 n~el~eL~kqL~E---~~k~lgvk----------~k~~~~ielp~gw~~~~~e~a~~w~ 746 (1123)
+.-.++|++.|+. ..+..++. +-+.+-||.||--.-||-+.---..
T Consensus 406 q~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i 464 (622)
T COG5185 406 QGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSI 464 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHH
Confidence 5545555555543 23333333 4456667777776666665544333
No 291
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.77 E-value=1.7 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhCcc-cccceee
Q 001211 704 LEELLKALTERCKKHGID-VKSHAVI 728 (1123)
Q Consensus 704 l~eL~kqL~E~~k~lgvk-~k~~~~i 728 (1123)
..+|++.+++.++.||++ ++..+.|
T Consensus 377 a~~l~~~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 377 AERLAKRVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 356777778888888874 3444333
No 292
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.70 E-value=2.2 Score=48.98 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001211 699 RIQSDLEELLKAL 711 (1123)
Q Consensus 699 ~in~el~eL~kqL 711 (1123)
++..+.-+|+.+|
T Consensus 160 ~Lr~EKVdlEn~L 172 (310)
T PF09755_consen 160 RLRREKVDLENTL 172 (310)
T ss_pred HHHHHHHhHHHHH
Confidence 3333333333333
No 293
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.70 E-value=2 Score=48.24 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 001211 588 KVDEREKVI 596 (1123)
Q Consensus 588 eLAnLenQi 596 (1123)
+++.++.++
T Consensus 81 ~l~~a~a~l 89 (334)
T TIGR00998 81 ALAKAEANL 89 (334)
T ss_pred HHHHHHHHH
Confidence 344444444
No 294
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.69 E-value=5.6 Score=41.70 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=49.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 001211 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELL 708 (1123)
Q Consensus 629 eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~ 708 (1123)
+++.+-..+|..|+.+|-..+..+..+..+|..+...+..++.+|.+.++.+.+++ +++..+..+.+.+.
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r----------~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLR----------EELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 33444455666666666666666666666666666666666666666666666555 44445555555555
Q ss_pred HHHHHHHHHhCccccc
Q 001211 709 KALTERCKKHGIDVKS 724 (1123)
Q Consensus 709 kqL~E~~k~lgvk~k~ 724 (1123)
.++.+.....|+=..+
T Consensus 126 ~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 126 KQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHhcCCCCCc
Confidence 5555544444443333
No 295
>PF13166 AAA_13: AAA domain
Probab=93.66 E-value=1.6 Score=54.20 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH----------HHHHHHhC
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL----------TERCKKHG 719 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL----------~E~~k~lg 719 (1123)
+...+.++.+++.++..++ .+-..+++.+..++.++.+|+.++ +++++.+|
T Consensus 412 i~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 412 IEEYQKEIKELEKEINSLE---KKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLG 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3334445555555666555 445566667777777766666554 66777776
No 296
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.62 E-value=1.3 Score=57.86 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=14.7
Q ss_pred cccHHHHHHHHHhCC-CCHH
Q 001211 23 RISGAEAVAFFQGSN-LPKQ 41 (1123)
Q Consensus 23 rISG~Ea~~ff~~SG-LP~~ 41 (1123)
++-|.++..+|.+.+ ||.+
T Consensus 156 Y~pGGDlltLlSk~~~~pE~ 175 (1317)
T KOG0612|consen 156 YMPGGDLLTLLSKFDRLPED 175 (1317)
T ss_pred cccCchHHHHHhhcCCChHH
Confidence 567788888888888 7664
No 297
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=93.62 E-value=0.22 Score=51.34 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC--CHHHHHHHHHhhcCC--CCCCcCHHHHHHHHHHHHHHhcC
Q 001211 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNL--PKQVLAQIWMHADHN--HTSYLGRQEFYNALKLVTVAQSK 76 (1123)
Q Consensus 4 ~~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGL--P~~~LaqIW~LAD~d--~DG~Ldr~EF~vAM~LValAQ~G 76 (1123)
.+...++++|..+|..+||+|++..+..+|+..|+ .++++.+.....+.+ +--.|++++|.-.+.-|+-...+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999999999875 456777777766666 22479999999887776654433
No 298
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=93.60 E-value=2.3 Score=50.61 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
+.-++.+.+.|+.+++.++.--.....++.++.+++.|++-.+.-+..|.+
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~ 394 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQ 394 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544445556666677777666665555544433
No 299
>PRK12704 phosphodiesterase; Provisional
Probab=93.60 E-value=2.6 Score=51.57 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=4.7
Q ss_pred HHHHHHhhhhhh
Q 001211 613 LVLYKSRCDNRL 624 (1123)
Q Consensus 613 Ll~yKsraeqeL 624 (1123)
+..++.+.++++
T Consensus 66 ~~~~R~Ele~e~ 77 (520)
T PRK12704 66 IHKLRNEFEKEL 77 (520)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 300
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=93.59 E-value=2.9 Score=49.62 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001211 666 FRELQERKMELHQAI 680 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeL 680 (1123)
|...+++|.+|+..|
T Consensus 352 L~r~~qrL~~L~~rL 366 (438)
T PRK00286 352 IERAQQRLEQLEQRL 366 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 301
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=1.5 Score=47.37 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=83.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA---SK 658 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LE---sQ 658 (1123)
.+.++++|..|+.|+ ..|+.|++.+ |-+.-.+.++.++- .|-.-++.||++...+.+.. .|
T Consensus 28 ~dSve~KIskLDaeL-------~k~~~Qi~k~-----R~gpaq~~~KqrAl----rVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 28 SDSVEKKISKLDAEL-------CKYKDQIKKT-----RPGPAQNALKQRAL----RVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHhc-----CCCcchhHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHH
Confidence 344556777777777 5555555544 44444444442221 11112334555554444322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCCcCCCc
Q 001211 659 LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGI 738 (1123)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~gw~~~~ 738 (1123)
..-+-..|++.+.-..-|+....+++..-.. -. =.+|+.+|.++.+|-.+-.|.+..||--.- +|- |
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykk-vn-Id~IedlQDem~Dlmd~a~EiQE~Lgr~y~------~pe-----i 158 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYKK-VN-IDKIEDLQDEMEDLMDQADEIQEVLGRNYN------TPD-----I 158 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCC-----c
Confidence 3333444666666666666666666511111 00 257888999999999999999999874321 111 1
Q ss_pred ccccccchhhhhhccccCCC-cccccccc
Q 001211 739 QEGAGVWDEDWDKFEDAGFG-NEITFDVK 766 (1123)
Q Consensus 739 ~e~a~~w~e~wd~~~d~~f~-~~~t~~~~ 766 (1123)
--++-+-+-|.|.+|.|. .+....+.
T Consensus 159 --de~dL~aELdaL~~E~d~~~~~~~~~~ 185 (218)
T KOG1655|consen 159 --DEADLDAELDALGQELDMLEEDENYLM 185 (218)
T ss_pred --CHHHHHHHHHHHHhHhhcccccccccc
Confidence 123344456777777776 44444443
No 302
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.58 E-value=2.4 Score=50.51 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001211 699 RIQSDLEELLKALTE 713 (1123)
Q Consensus 699 ~in~el~eL~kqL~E 713 (1123)
.+..++++++.+|.+
T Consensus 288 ~~~~~l~~~~~~l~~ 302 (457)
T TIGR01000 288 KVKQEITDLNQKLLE 302 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444445444444
No 303
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=93.56 E-value=3.4 Score=41.83 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSAD--GLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n--~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
...+...+..+..+.....++....... ..++.++++|+.....|...+.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L 209 (213)
T cd00176 152 EEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKL 209 (213)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666655444433 6789999999999999999998888775
No 304
>PTZ00464 SNF-7-like protein; Provisional
Probab=93.56 E-value=3 Score=45.62 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001211 695 VRADRIQSDLEELLKALTERCKKHGI 720 (1123)
Q Consensus 695 er~~~in~el~eL~kqL~E~~k~lgv 720 (1123)
++++.|..++.|+...-+|....++-
T Consensus 124 d~Vd~l~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 124 DKVEDLQDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57788888888888888999988763
No 305
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=3.4 Score=50.40 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=13.4
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSR 600 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~ 600 (1123)
|..+|.+++++|+.+|..++
T Consensus 44 eK~~Lkqq~eEleaeyd~~R 63 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLAR 63 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777775554
No 306
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=93.55 E-value=1.3 Score=49.11 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=67.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (1123)
Q Consensus 589 LAnLenQied-~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lq 667 (1123)
|.+|=|.+.- +.+++..+..|+.++..+-+ .|-+..++|..+-+++..++..+..-=..++-|.+|..++|..|-
T Consensus 76 LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr----~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFLQQATQVNAWDR----TLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 56677889999999988844 355555666666555555442222222233344444444444444
Q ss_pred HHHHHHHH------------HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 668 ELQERKME------------LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 668 diQ~EL~E------------LeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
.+++++.. -+++.-++- ..|-.|++++-.+|.++.++|++-++-
T Consensus 152 ~lE~k~~~~~g~~~~~~~D~eR~qty~~a------~nidsqLk~l~~dL~~ii~~lN~~~~~ 207 (254)
T KOG2196|consen 152 PLETKLELQSGHTYLSRADVEREQTYKMA------ENIDSQLKRLSEDLKQIIKSLNTMSKT 207 (254)
T ss_pred HHHHHHhccccchhhhhhhHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHhccCc
Confidence 44444433 122222222 467788888888888888888765543
No 307
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.54 E-value=1.7 Score=54.38 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET--------------LGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqs--------------LR~kyEee~KqV~~LEsQLavlEa~Lqd 668 (1123)
.+.|+.++++....+.+..+++.....+++.+-..+.. |..+|+.....+..|..|...--+.+.+
T Consensus 49 ~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~e 128 (660)
T KOG4302|consen 49 LEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKE 128 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888877777777777766555443 3333333333333333333333333444
Q ss_pred HHHHHHHHHHHHHHH-----hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 669 LQERKMELHQAIVNM-----ERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 669 iQ~EL~ELeqeLqkl-----q~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
++.|+++|-.+|..- .--.++...--+++++++.+|.+|+++-..|-+.
T Consensus 129 l~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek 182 (660)
T KOG4302|consen 129 LYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK 182 (660)
T ss_pred HHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444311 0001112222377888888888888777654443
No 308
>PRK00106 hypothetical protein; Provisional
Probab=93.53 E-value=2.7 Score=51.60 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (1123)
Q Consensus 648 e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeL 680 (1123)
+.+.++.-+.+|...+..|..++.+|.+++.++
T Consensus 116 Ree~LekrE~eLe~kekeLe~reeeLee~~~~~ 148 (535)
T PRK00106 116 KDENLSSKEKTLESKEQSLTDKSKHIDEREEQV 148 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334333444444444444433333
No 309
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.53 E-value=1.8 Score=48.91 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
++.-|+.++.++++..+++.+|++..+.+|+.+..++.+|...+.-|+.++ .--..--+..+.+.. ||+++...
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq---~vRPAfmdEyEklE~---EL~~lY~~ 240 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ---SVRPAFMDEYEKLEE---ELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHH---HHHHHHHH
Confidence 566667777777777788888888888888888888888888888888777 444444444444443 44444555
Q ss_pred HHHHhCcccccce
Q 001211 714 RCKKHGIDVKSHA 726 (1123)
Q Consensus 714 ~~k~lgvk~k~~~ 726 (1123)
|+.++-.-..|++
T Consensus 241 Y~~kfRNl~yLe~ 253 (267)
T PF10234_consen 241 YVEKFRNLDYLEH 253 (267)
T ss_pred HHHHHHhHHHHHH
Confidence 6655544444443
No 310
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=93.51 E-value=3.4 Score=44.83 Aligned_cols=147 Identities=18% Similarity=0.127 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHH
Q 001211 601 EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYK---QVAEIASKLTIEDAKF----RELQERK 673 (1123)
Q Consensus 601 Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~K---qV~~LEsQLavlEa~L----qdiQ~EL 673 (1123)
++++.|+.++++|... .-+||+..+ .+=.+.-.|=.||.+-++ +...++..|..+|..| -++..++
T Consensus 37 ~~e~~~~~KY~~lR~E---lI~ELkqsK----klydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i 109 (196)
T PF15272_consen 37 LQETSYKEKYQQLRQE---LINELKQSK----KLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREI 109 (196)
T ss_pred hhhhHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3467777777776532 222344433 233344444444444333 3334444444444443 2233344
Q ss_pred HHHHHHHHHHhhcCCCchhHH----HHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCCcCCCcccccccchhhh
Q 001211 674 MELHQAIVNMERGGSADGLLQ----VRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDW 749 (1123)
Q Consensus 674 ~ELeqeLqklq~g~~~n~~Lq----er~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~w 749 (1123)
..|+++|..++ -.+..|+ ......++.|.+|+.+|.++-...+-..-.+. -+.++..+-.++.+ -|-.|.
T Consensus 110 ~~~~~~l~~~~---~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~~~~~~~~~s~--~~s~~~~~~~~~~~-~~~~d~ 183 (196)
T PF15272_consen 110 RTLQDELLSLE---LRNKELQNERERERIAYESRIADLERQLNSRNNSSNDNYVSSN--SYSTSSYSIPYETN-SPLSDY 183 (196)
T ss_pred HHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc--ccCCCcCCcchhcc-cccccc
Confidence 44444444333 2222222 22236788999999999865444322222111 23345555556665 555555
Q ss_pred hhccccCCCcc
Q 001211 750 DKFEDAGFGNE 760 (1123)
Q Consensus 750 d~~~d~~f~~~ 760 (1123)
+.=.|.-|.|+
T Consensus 184 n~s~dt~flkn 194 (196)
T PF15272_consen 184 NDSIDTQFLKN 194 (196)
T ss_pred cchhhHHHHhc
Confidence 44444444443
No 311
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=93.51 E-value=1.9 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccc
Q 001211 699 RIQSDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 699 ~in~el~eL~kqL~E~~k~lgvk~ 722 (1123)
+|..+=+.|+.||.|++..+--|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~ 177 (189)
T TIGR02132 154 QIKTQGEQLQAQLLEKQEALAAKL 177 (189)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666555544333
No 312
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.50 E-value=3.3 Score=51.61 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=32.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET 640 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqs 640 (1123)
++.+..-+|..++..|...+.++..+.+|.+.|.......-++|+.++++......+|..
T Consensus 507 E~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 507 ETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555566666666666666666666666666555444444443
No 313
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.47 E-value=2.7 Score=51.21 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREK------------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (1123)
Q Consensus 587 keLAnLenQied~~Ek------------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~ 654 (1123)
.+|++|++=|.+..++ ...|++++.++.....+. +|++..+.+..+..+|+.|=.-++.+++....
T Consensus 229 ~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 229 GQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDLLEREVEAKNV 306 (570)
T ss_pred HHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554433 445555555544444444 36666666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001211 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHG 719 (1123)
Q Consensus 655 LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lg 719 (1123)
++..+.++-.+|..++.....|..+|..+++.=.-+..=....+.+..+|.+|..++.+....++
T Consensus 307 V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~ 371 (570)
T COG4477 307 VEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIE 371 (570)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88777788888888888888888888877753333333333344566677777777766655543
No 314
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.46 E-value=2.3 Score=45.43 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
..|.+|++-+..-...++.+-+.+.++-..+.++-..-..++..+..+++.||....-+-++-.-...+|.+|++-|.+-
T Consensus 74 slLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 74 SLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444333333332222222322222334455556666666666666666666777888888888766
Q ss_pred hhcCCCchhHHHHHHHHHHHHH
Q 001211 684 ERGGSADGLLQVRADRIQSDLE 705 (1123)
Q Consensus 684 q~g~~~n~~Lqer~~~in~el~ 705 (1123)
+ .+--.+|+++.+++..++
T Consensus 154 e---hqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 154 E---HQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred H---HHHHHHHHHHHHHHhhHH
Confidence 6 555677888888887764
No 315
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=93.42 E-value=1.1 Score=43.31 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLN 625 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLn 625 (1123)
..|+.+++.|...++..+.+++
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~ 30 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLN 30 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 316
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.42 E-value=5.1 Score=44.21 Aligned_cols=14 Identities=36% Similarity=0.359 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001211 698 DRIQSDLEELLKAL 711 (1123)
Q Consensus 698 ~~in~el~eL~kqL 711 (1123)
..|-..|.++...|
T Consensus 149 ~~i~krl~e~~~~l 162 (247)
T PF06705_consen 149 ENILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 317
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=93.41 E-value=0.11 Score=53.63 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=47.1
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHh---CCCCHHHHH----HHHHhhcCCCCCCcCHHHHHHHH
Q 001211 12 FFRRADLDGDGRISGAEAVAFFQG---SNLPKQVLA----QIWMHADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 12 vF~~lD~DgDGrISG~Ea~~ff~~---SGLP~~~La----qIW~LAD~d~DG~Ldr~EF~vAM 67 (1123)
.|+++|-|+|+.|...++...+.+ .+|+.+++. +|.+.||.|+||.|++.||-..+
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 488999999999999988777654 689987765 56788999999999999997543
No 318
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.40 E-value=6.8 Score=42.66 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 629 eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
.++......+..|...|+.....|+.|+.+|..++..|...+.+...|....+..
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777777777777888888777777777777777666555533
No 319
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=93.39 E-value=3.8 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001211 694 QVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 694 qer~~~in~el~eL~kqL~E~~k 716 (1123)
..++..++..|+.|++.+..+.+
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666644443
No 320
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=93.37 E-value=1.6 Score=46.69 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 001211 699 RIQSDLEELLKA 710 (1123)
Q Consensus 699 ~in~el~eL~kq 710 (1123)
..+.+++-|+++
T Consensus 167 ~~~~ei~~lk~~ 178 (189)
T PF10211_consen 167 KHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 321
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=2.2 Score=51.91 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 658 KLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+|..+|+.|++++++|...+.+...+
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555533
No 322
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=93.34 E-value=0.07 Score=39.40 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHH
Q 001211 43 LAQIWMHADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 43 LaqIW~LAD~d~DG~Ldr~EF~vAM 67 (1123)
|.+++..+|.|+||.|+++||...|
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998743
No 323
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.29 E-value=6.9 Score=42.89 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL 711 (1123)
.||..++..+-.+..|+++|
T Consensus 165 aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 165 ALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 324
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=93.26 E-value=0.86 Score=43.85 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
.++-.|-.+...+...+..++.+.+.+..+|.+++..|.+-..|++++..|..++.+|+.++.+....+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666677777788889999999999999888778889999999999999999999998876654
No 325
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=93.25 E-value=0.18 Score=59.21 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=57.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 407 ~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
.+...+|.++|.++||.|..+|+.+.|++. +|..+.+++|.+-+|.++.+.|+++||--.|-|.
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 445689999999999999999999999987 6999999999999999999999999997666543
No 326
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.24 E-value=2.2 Score=47.37 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 591 EREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1123)
Q Consensus 591 nLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEs 657 (1123)
.++.++..+....+.|..|.......-........++..+...+...|..|...+.+-..++..+..
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333343333333555555555555544444445555555555666666666555555555554444
No 327
>PRK12705 hypothetical protein; Provisional
Probab=93.22 E-value=2.8 Score=51.25 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (1123)
Q Consensus 611 QELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~EL 676 (1123)
+++..++.++++++++.+.+....++.+...+..++.+.+.++..+.+|...+..|...+.++.++
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666767777666666555555555555566666666666666665555555555444443
No 328
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.20 E-value=3.4 Score=49.63 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCCCchhHHHHHHHHHHHHHH
Q 001211 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN-------MERGGSADGLLQVRADRIQSDLEE 706 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk-------lq~g~~~n~~Lqer~~~in~el~e 706 (1123)
...-+..++.|-++-...++.|...+..-|..++.+|++..+|..+|.+ .+.-..|-..|-..++.|+.+.++
T Consensus 314 ~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~ 393 (622)
T COG5185 314 YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDK 393 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3444555666667777788888888888899999999999999998872 222235666788888999999999
Q ss_pred HHHHHH
Q 001211 707 LLKALT 712 (1123)
Q Consensus 707 L~kqL~ 712 (1123)
|.+.+-
T Consensus 394 L~k~V~ 399 (622)
T COG5185 394 LTKSVK 399 (622)
T ss_pred HHHHHH
Confidence 988873
No 329
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.14 E-value=3.2 Score=45.10 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 001211 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS 702 (1123)
Q Consensus 649 ~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~ 702 (1123)
..++..|+.++..++..+..++.+|.+|+..|..++ ..-..|.-|.....+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k---~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR---ARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345667777777777777788888888888887777 555555555544433
No 330
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=93.11 E-value=3.4 Score=42.77 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREK---IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY-EEKYKQVAEIASKLT 660 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek---~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~ky-Eee~KqV~~LEsQLa 660 (1123)
.++.|++|++.+.++.+. ...|-..+++....+....+.-..+-.+.+ ++||+.+ .-..+-+-..+++|.
T Consensus 34 v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s------~~l~~~~~~~~e~~i~~~~~~I~ 107 (146)
T PF08702_consen 34 VDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYS------KSLRKMIIYILETKIINQPSNIR 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHH------HHHHHHHHHHHHHHHhhhHhHHH
Confidence 345566666666554443 344444444444444333111111211111 2233222 112244455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 661 IEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
.|.+.|+....+++.|+..|..+.
T Consensus 108 ~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 108 VLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665443
No 331
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=93.09 E-value=1.5 Score=50.47 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001211 601 EKIEFYRSKMQELVLYKSRCDNRLNEITERAL---------ADRREAETLGKKYEEKYKQVAEIASKLTIEDAK------ 665 (1123)
Q Consensus 601 Ek~~~lrsQmQELl~yKsraeqeLne~~eq~s---------elkreLqsLR~kyEee~KqV~~LEsQLavlEa~------ 665 (1123)
+..+++++|++++...-..++.+|.+-+++.. .....+..|+ .++.+++.+|+.+..+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~-------~~l~~~~~~l~~l~~~~~~~~P 242 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLE-------GELIRVQAQLAQLRSITPEQNP 242 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCCCC
Confidence 33556666666666666666666655543221 1222233333 3444444444444322
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 001211 666 -FRELQERKMELHQAIVNM 683 (1123)
Q Consensus 666 -LqdiQ~EL~ELeqeLqkl 683 (1123)
+..++.++.+|+++|.+.
T Consensus 243 ~v~~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQ 261 (362)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 555666666666666643
No 332
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.07 E-value=4.8 Score=45.27 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccee
Q 001211 652 VAEIASKLTIEDAK---FRELQERKMELHQAIVNMERGG-SADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAV 727 (1123)
Q Consensus 652 V~~LEsQLavlEa~---LqdiQ~EL~ELeqeLqklq~g~-~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ 727 (1123)
+.+|+-.|++...+ |+.-+++|..--++|.+...|- ..--.||+++.....+|+.|++-|.-..++.|=++--...
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a 317 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDA 317 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 44555555555433 5555555555555555444333 3456789999999999999999988888887766554443
Q ss_pred e
Q 001211 728 I 728 (1123)
Q Consensus 728 i 728 (1123)
|
T Consensus 318 ~ 318 (330)
T KOG2991|consen 318 I 318 (330)
T ss_pred c
Confidence 3
No 333
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=93.07 E-value=0.13 Score=59.90 Aligned_cols=108 Identities=25% Similarity=0.372 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 609 KMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT----IEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 609 QmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa----vlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+++.+.....++..+|+++...+.+++.+|+.|++.+.+...++.++...+. .+...+.++++++.+|+..+.++.
T Consensus 85 ~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 85 NLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ---------------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3334444555555556666555666667777776555554444444433321 223344444444444444444444
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 001211 685 RGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1123)
Q Consensus 685 ~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k 723 (1123)
+....+++++..+...|++|+ .+.+.-+|++.
T Consensus 165 ---~~~~~~~k~i~~l~~kl~DlE----nrsRRnNiRIi 196 (370)
T PF02994_consen 165 ---QAIKELEKRIKKLEDKLDDLE----NRSRRNNIRII 196 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH----HHHTTTEEEEE
T ss_pred ---hHHHHHHHHHHHHHHHHHHHH----hhccCCceeEE
Confidence 222233345544444444433 35566677653
No 334
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.03 E-value=3.6 Score=45.43 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001211 666 FRELQERKMELHQAIVNME 684 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq 684 (1123)
+...+.++.++.+.+.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~ 119 (225)
T COG1842 101 AKALEAELQQAEEQVEKLK 119 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 335
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.03 E-value=1.3 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001211 663 DAKFRELQERKMELHQAIVNMER 685 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~ 685 (1123)
...+..++.++.+|+..|..+++
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33355556666666666666664
No 336
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=3.2 Score=49.61 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~ 654 (1123)
.....+.++.|+.+|.|.-.-|.......+++...|..+++++.+-.+|.+.
T Consensus 267 ~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 267 FEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888888887667666666666666666666555554444443
No 337
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=0.94 Score=54.41 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREK--------------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEE 647 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek--------------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEe 647 (1123)
+.++++++.+|+..|.++.-| |+.||+|++-|+....+. +++++.|..|-
T Consensus 378 I~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P-----------nq~k~Rl~~L~----- 441 (508)
T KOG3091|consen 378 IEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP-----------NQLKARLDELY----- 441 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 001211 648 KYKQVAEIASKLTIEDAK------FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE---RCKKH 718 (1123)
Q Consensus 648 e~KqV~~LEsQLavlEa~------LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E---~~k~l 718 (1123)
..++..+.++...|.+ +.+.++.|.+-++.|.+|- +-+..++++|+.+|.| .|+.+
T Consensus 442 --e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv-------------~Ilk~d~edi~~~l~E~~~~~~~~ 506 (508)
T KOG3091|consen 442 --EILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLV-------------NILKGDQEDIKHQLIEDLEICRKS 506 (508)
T ss_pred --HHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHhhHHHHhhh
No 338
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=93.02 E-value=4.5 Score=47.66 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 590 DEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1123)
Q Consensus 590 AnLenQied~~Ek-~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lqd 668 (1123)
..|+..|..+.++ ...++.|...+..--. +++.++..-+.+++-.+..+..++.+..+.+..|+..|..-++.|+-
T Consensus 221 ~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~---~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkv 297 (384)
T PF03148_consen 221 AQLREDIDSILEQTANDLRAQADAVNAALR---KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKV 297 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455555443322 4555555555443332 23555555666677777778878888888888888888777777777
Q ss_pred HHHHHH-----------------HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 669 LQERKM-----------------ELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 669 iQ~EL~-----------------ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
++++|. .|..|+.+++ ..-..|++++.+....+..|........+-
T Consensus 298 aqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~---~~i~~L~~~L~~a~~~l~~L~~~~~~Le~d 360 (384)
T PF03148_consen 298 AQTRLENRTQRPNVELCRDPPQYGLIEEVKELR---ESIEALQEKLDEAEASLQKLERTRLRLEED 360 (384)
T ss_pred HHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777664 2444455555 444555566666666655555555443333
No 339
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=2.4 Score=42.78 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 653 AEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+.|+-+|.++|..-..+++++.+|+++|+++
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555543
No 340
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.01 E-value=2.8 Score=54.39 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT-------ERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~-------eq~selkreLqsLR~kyEee~KqV~~LEsQL 659 (1123)
+++..++.++.-+...+.+++.+|+.+...-...+++|..+. .++++++|+|+....+.++-.+.+.+++..|
T Consensus 676 ~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 676 KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544444444444444 4444555555555544444444445555443
Q ss_pred H-------------HHHHHH-HHHHHHHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHHHHHH
Q 001211 660 T-------------IEDAKF-RELQERKMELHQAIVNMERGG--SADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 660 a-------------vlEa~L-qdiQ~EL~ELeqeLqklq~g~--~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
= =.|..+ +..-.++.+++.++++++-.- ..+..++.|+.++...++.++.++
T Consensus 756 f~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~ 823 (1141)
T KOG0018|consen 756 FKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEI 823 (1141)
T ss_pred HHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhH
Confidence 0 012222 222234556666666544211 133566666666666666666555
No 341
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=93.00 E-value=2.7 Score=49.35 Aligned_cols=141 Identities=14% Similarity=0.216 Sum_probs=70.4
Q ss_pred hhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001211 583 TTAGKKVDEREKVILDSREK--IEFYRSKMQELVLYKSRC-----DNRLNEITERALADRREAETLGKKYEEKYKQVAEI 655 (1123)
Q Consensus 583 tdL~keLAnLenQied~~Ek--~~~lrsQmQELl~yKsra-----eqeLne~~eq~selkreLqsLR~kyEee~KqV~~L 655 (1123)
.++.+.+.+|...++.++.. ++.++.++.+|...-+.. ..+...+..+.+.++..+..++ +|.+..++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~-~~~~~~~d~~~l 81 (364)
T TIGR00020 3 NEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLE-ELKNSLEDLSEL 81 (364)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34445566666666555533 555566666666554433 1233344444455555555554 345445555444
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHh-------hcCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHhCccc
Q 001211 656 ASKLTIE--DAKFRELQERKMELHQAIVNME-------RGGSADGLLQVRA----DRIQSDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 656 EsQLavl--Ea~LqdiQ~EL~ELeqeLqklq-------~g~~~n~~Lqer~----~~in~el~eL~kqL~E~~k~lgvk~ 722 (1123)
.+-+... +.-+..++.++.+|+++|.+++ .-...|..|+-|+ .+..-=..+|-+-+..||...|+++
T Consensus 82 ~el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~ 161 (364)
T TIGR00020 82 LELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKV 161 (364)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 4333110 1123345555555555555444 1112233333332 1222334566666788999999888
Q ss_pred cc
Q 001211 723 KS 724 (1123)
Q Consensus 723 k~ 724 (1123)
.+
T Consensus 162 ev 163 (364)
T TIGR00020 162 EI 163 (364)
T ss_pred EE
Confidence 75
No 342
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=93.00 E-value=2.2 Score=48.25 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
++.+|.++..|++++++++ .|+|++..-..-|-.-..+|+|
T Consensus 392 errkqkeeeklk~e~qkik-------eleek~~eeedal~~all~~qe 432 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIK-------ELEEKIKEEEDALLLALLNLQE 432 (445)
T ss_pred HHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHH
Confidence 5566667777888888777 5666655444433333333333
No 343
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.99 E-value=1.5 Score=54.72 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------H
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE-------------------D 663 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl-------------------E 663 (1123)
-+.|+.++++++..+.++-.+|+....+.++-++-+.+|+..|+.++.-+.+|.+.|..+ .
T Consensus 986 nekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh 1065 (1480)
T COG3096 986 NEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELH 1065 (1480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHH
Confidence 356888999999999999888999888999899999999999999999999999887544 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 664 AKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 664 a~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+.|..-+++.++++.+|.-++ .+-..|..||+.+..+-.++..+.
T Consensus 1066 ~~Lst~RsRr~~~EkqlT~~E---~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1066 AQLSTNRSRRNQLEKQLTFCE---AEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred HHHhccHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334455555566666666555 555566666666666655555544
No 344
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.99 E-value=5.5 Score=44.94 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 001211 695 VRADRIQSDLEELLKALTERCKKHG 719 (1123)
Q Consensus 695 er~~~in~el~eL~kqL~E~~k~lg 719 (1123)
.++...+.++..++.+|......++
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777766544443
No 345
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=92.95 E-value=1.5 Score=56.36 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~-g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgv 720 (1123)
+|+.||+||.++...|-+. =|.++-.+|..|+. --..+..||..+..++..|++++.--+|+-|++|-
T Consensus 1161 DIEkLE~qLq~~~~kL~dA--yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGa 1229 (1439)
T PF12252_consen 1161 DIEKLEKQLQVIHTKLYDA--YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGA 1229 (1439)
T ss_pred HHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCC
Confidence 6666666666553332221 12233334444442 12355689999999999999999877889998774
No 346
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=92.94 E-value=2.3 Score=48.25 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 657 SKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 657 sQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
.++..++..+..++.+++.+++++..++.+ ..++++...+.++..++.+|...+..
T Consensus 145 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 145 NDLENARSSRDQAQATLKSAQDKLSQYREG-----NRPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777776633 23456666777777776666554333
No 347
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.86 E-value=2.7 Score=41.10 Aligned_cols=32 Identities=3% Similarity=0.090 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCD 621 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsrae 621 (1123)
.++-++|..+++++..+..+++.|...+.++.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~ 37 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAE 37 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443344444555555555555555553
No 348
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.84 E-value=0.87 Score=50.80 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=69.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-------HHHH------------------HHhHHHH
Q 001211 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI-------TERA------------------LADRREA 638 (1123)
Q Consensus 584 dL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~-------~eq~------------------selkreL 638 (1123)
+|+++|.++++++++.++=++.|+.-+..++..-... ...++. +.++ .....-|
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSAS-RSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 5667777777777766666666666666665431110 001110 0000 0112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 001211 639 ETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS 702 (1123)
Q Consensus 639 qsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~ 702 (1123)
--|. +|-+-...++.+||+.|+..++++..|+.||.+++ ..|-.|=||++=+++
T Consensus 82 pIVt-------sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~---~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 82 PIVT-------SQRDRFRQRNAELEEELRKQQQTISSLRREVESLR---ADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 3344 88888889999999999999999999999999999 788888777775543
No 349
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=1.6 Score=43.98 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+++|+.++..+|-+++.++.+-..|+.+|.+++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444
No 350
>PF13166 AAA_13: AAA domain
Probab=92.82 E-value=2 Score=53.47 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=9.3
Q ss_pred CCCCCcCHHHHHHHHHHH
Q 001211 453 DSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 453 DnDG~LdkdEF~IAMhLI 470 (1123)
+..-.++.++..-.+-.+
T Consensus 176 ~~~~~~~~~~l~~~~~~l 193 (712)
T PF13166_consen 176 EESSLLSLEELEERIKIL 193 (712)
T ss_pred ccccccCHHHHHHHHHHh
Confidence 344566666655444433
No 351
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=92.76 E-value=2 Score=50.15 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.9
Q ss_pred CCCcCHHHHHHHHHHHHHHhc
Q 001211 455 DSMLSLREFCFALYLMERYRE 475 (1123)
Q Consensus 455 DG~LdkdEF~IAMhLI~~~~~ 475 (1123)
-|.++-.-|+-.+.||+-.++
T Consensus 81 yGF~d~ltf~SVVelIn~yr~ 101 (464)
T KOG4637|consen 81 YGFSDPLTFNSVVELINHYRN 101 (464)
T ss_pred cCCCCchhhHHHHHHHHHHhh
Confidence 477777889999999988765
No 352
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.76 E-value=4 Score=52.79 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~-g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+.+++.+++..++..+..++.++..|..++..+.. -......|++|...++..+++|+..+
T Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 377 (908)
T COG0419 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKEL 377 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443310 11223344444444554444444444
No 353
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.72 E-value=2 Score=47.34 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 633 elkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
.+++.+..++.|+++.++...+|-..|..+|+.+...|++|..|+-+...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666665555555555555554444433
No 354
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.68 E-value=2.7 Score=54.63 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCCC---ccCH-----HHHHHHHHhcCCCHHHHHHHHHhhCC---CCCCCc---CHHHHH
Q 001211 407 QKYSKVFMEVDTDRDG---RITG-----EQARNLFMSWRLPREVLKQVWDLSDQ---DSDSML---SLREFC 464 (1123)
Q Consensus 407 ~kY~~IF~slDkD~DG---~ISG-----~Ear~~F~kSgLP~e~L~qIW~LADi---DnDG~L---dkdEF~ 464 (1123)
.....||+.++..+.- +||+ +|+..+|...-... ..+|-.-|. ++.|.+ ..+|+.
T Consensus 166 Ral~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~---~~~~~k~~~~~~~~kggV~vkGlEEi~ 234 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSD---KKLRIKDDSTIVDGKGGVIVKGLEEII 234 (1041)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccc---cccccccCCcccCCcCcEEEecceeee
Confidence 4577899999865422 4555 45565554322221 677777777 555443 345553
No 355
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.68 E-value=2.9 Score=47.33 Aligned_cols=106 Identities=7% Similarity=0.124 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHH-------hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKS-------RCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (1123)
Q Consensus 604 ~~lrsQmQELl~yKs-------raeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~EL 676 (1123)
..+..|++.|...+. .++.-|..-+..+.+.+.++..|..+.+.-...+++|+..-.-+.+.|+-+..+++-|
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 444455555544443 3344444444444445556666777777777777777777777778888888888888
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001211 677 HQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHG 719 (1123)
Q Consensus 677 eqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lg 719 (1123)
+.+|...+ ++|+.++.+|..++..|.--|+..+
T Consensus 101 EgQl~s~K----------kqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 101 EGQLNSCK----------KQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888766 5788888888888888866555544
No 356
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.67 E-value=6.6 Score=42.33 Aligned_cols=71 Identities=10% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 612 ELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 612 ELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
++..++..++.+++.-+.+....++.|..-...++.+...+..-+..|...+..|...+.+|.+++.++.+
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~ 131 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555665665555555545555554444455555555555555555555554444445554444443
No 357
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=92.67 E-value=1.4 Score=45.85 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001211 708 LKALTERCKK 717 (1123)
Q Consensus 708 ~kqL~E~~k~ 717 (1123)
..+|++..++
T Consensus 200 a~~L~~~v~~ 209 (213)
T PF00015_consen 200 AEELQELVDR 209 (213)
T ss_dssp HCCCCHHCHH
T ss_pred HHHHHHHHHh
Confidence 3333444333
No 358
>PRK10698 phage shock protein PspA; Provisional
Probab=92.64 E-value=11 Score=41.55 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
++..|+.++...+..+..++.++.+|+..|.+++
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555444
No 359
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.63 E-value=0.71 Score=50.62 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 633 elkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
++..+++.|..+|++....++.|+-..+-+|..|+.+-.+...|+..+..+.
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444444444444444444333333
No 360
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.63 E-value=5.9 Score=42.68 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+..++.++..++.....++..|.+|+..|.+++
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 361
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.63 E-value=0.91 Score=54.51 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=8.9
Q ss_pred ccccchhhhhhcc
Q 001211 741 GAGVWDEDWDKFE 753 (1123)
Q Consensus 741 ~a~~w~e~wd~~~ 753 (1123)
+...|.|.=|...
T Consensus 171 ~~~~Wv~P~D~~~ 183 (472)
T TIGR03752 171 GGVVWVEPQDALP 183 (472)
T ss_pred CceEeeccccccc
Confidence 5567888777654
No 362
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.62 E-value=3.8 Score=45.64 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+..+..++.++..|.++...-. .+...||.++...+..+.+.+..|
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke---~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKE---EEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444 333444444444444444444444
No 363
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=92.61 E-value=1.6 Score=46.83 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHhCcccccceeee
Q 001211 691 GLLQVRADRIQSDLEELLK---ALTERCKKHGIDVKSHAVIE 729 (1123)
Q Consensus 691 ~~Lqer~~~in~el~eL~k---qL~E~~k~lgvk~k~~~~ie 729 (1123)
.++|.||++|..+|+.-.. ...||||.-|=.--|+.+|+
T Consensus 87 ~l~QARidRvK~HiDdkia~ePkFle~nQV~GniKlLd~lIe 128 (228)
T PF06721_consen 87 SLYQARIDRVKAHIDDKIADEPKFLEFNQVKGNIKLLDNLIE 128 (228)
T ss_pred HHHHHHHHHHHHHhhhhhhcchHHHHHHHhhchHHHHHHHhh
Confidence 7889999999999976543 56889998876555555543
No 364
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=92.59 E-value=1.1 Score=49.07 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1123)
Q Consensus 633 elkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1123)
.++.++++..++++.-.+++++|+.|...+...+..+-++.+.|+.+
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444333333333333333333333
No 365
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=4.4 Score=50.10 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHhCccccc
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNMER------GGSADGLLQVRADRIQSDLEELL-KALTERCKKHGIDVKS 724 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~------g~~~n~~Lqer~~~in~el~eL~-kqL~E~~k~lgvk~k~ 724 (1123)
+..++..+..|+-.|...+.+..+|+..|.++++ .|.-- .| ..+..|. ..+.+.+..||+|-==
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~-pv--------k~ve~~t~~~Ie~~e~~~gik~GD 546 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGT-PV--------KVVEKLTLEAIEEAEEEYGIKEGD 546 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-ce--------ehhhhhhHHHHHhHHHhhccccCc
Confidence 3344455555566666666666666665555440 00000 00 1122222 2345677788887777
Q ss_pred ceeeecCCCc
Q 001211 725 HAVIELPFGW 734 (1123)
Q Consensus 725 ~~~ielp~gw 734 (1123)
-+.|+=|.|=
T Consensus 547 vi~v~~~sG~ 556 (652)
T COG2433 547 VILVEDPSGG 556 (652)
T ss_pred EEEEEcCCCc
Confidence 7777777763
No 366
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=92.51 E-value=2.7 Score=43.71 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 624 Lne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
+.++...+......++..+..+++..+.+..+...+......+..+...+.++.....+
T Consensus 102 i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~ 160 (213)
T PF00015_consen 102 IEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEE 160 (213)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHH
Confidence 33333333333344444444444444444444444444444444444444444444443
No 367
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.50 E-value=2.6 Score=55.36 Aligned_cols=27 Identities=0% Similarity=-0.015 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 692 LLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
.+.+++..+..++.++...+..|..+.
T Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~L~ 883 (1047)
T PRK10246 857 DNRQQQQALMQQIAQATQQVEDWGYLN 883 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666665555555554
No 368
>PRK00106 hypothetical protein; Provisional
Probab=92.48 E-value=6.5 Score=48.45 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQAI 680 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeL 680 (1123)
+...|.+|..-|..|.+++.+|.+.+++|
T Consensus 99 L~qrE~rL~qREE~LekRee~LekrE~eL 127 (535)
T PRK00106 99 LKQIESRLTERATSLDRKDENLSSKEKTL 127 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333333333333333333
No 369
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.48 E-value=2.9 Score=51.49 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001211 666 FRELQERKMELHQAIVNME 684 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq 684 (1123)
+..++.++.++.++|.+++
T Consensus 374 yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 370
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.46 E-value=8.4 Score=44.23 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 600 REKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1123)
Q Consensus 600 ~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1123)
++.-..|..|+.+.+.+-...+.+|..++....+-.--++.+...+.+..-++++|+.-....++.++.--.+-+.|++-
T Consensus 143 kd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 143 KDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555555444433444555555555555555566655555555555555566666666
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHH
Q 001211 680 IVNMERGGSADGLLQVRADRIQSD 703 (1123)
Q Consensus 680 Lqklq~g~~~n~~Lqer~~~in~e 703 (1123)
|.+++ .+|..|+.+++.....
T Consensus 223 L~Qlq---sEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 223 LSQLQ---SENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHH---HHHHHHHHHHHHHHHH
Confidence 66666 6666666555554433
No 371
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=92.46 E-value=9.8 Score=41.28 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE-RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (1123)
Q Consensus 587 keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~e-q~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~ 665 (1123)
+-|.+|+.++..+..+...|..+++++.....++ +...+. ++...-+.=..+.+.+++-..++.+||.++..+|..
T Consensus 27 ~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~---~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a 103 (191)
T PTZ00446 27 KAILKNREAIDALEKKQVQVEKKIKQLEIEAKQK---VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENM 103 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777666554433 222111 111111111223333444445666666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLL-QVRADRIQSDLEELLKALTERCKKHG 719 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~L-qer~~~in~el~eL~kqL~E~~k~lg 719 (1123)
.... .-+..|++.-..|+ ..+..+ =++++.|..+++|....-+|....++
T Consensus 104 ~~~~-ev~~aLk~g~~aLK---~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs 154 (191)
T PTZ00446 104 HLHK-IAVNALSYAANTHK---KLNNEINTQKVEKIIDTIQENKDIQEEINQALS 154 (191)
T ss_pred HHHH-HHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3222 12333333333333 111111 25778888888888888899998876
No 372
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.44 E-value=2.5 Score=49.93 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNR-LNEITERALADRREAETLGKKYEEKYK------QVAEIAS----KLTIEDAKFRELQE 671 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqe-Lne~~eq~selkreLqsLR~kyEee~K------qV~~LEs----QLavlEa~LqdiQ~ 671 (1123)
++.||..+=+|.+.....+.- .|.+=.++.+++.+-..|.+|||+.+. +|.++-. .-+.+...++.+|.
T Consensus 181 leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~ 260 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQA 260 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHH
Confidence 344555444444443332222 233345566666666667777766654 3332210 01223344666688
Q ss_pred HHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHH
Q 001211 672 RKMELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 672 EL~ELeqeLqklq~g~~-~n~~Lqer~~~in~el~eL~kqL 711 (1123)
|+..|+..|...++.-. +-.-+.+.-..+..++..|++.|
T Consensus 261 EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 261 EVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888886652211 22233333345566666677666
No 373
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.41 E-value=2.2 Score=52.33 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcCC
Q 001211 623 RLNEITERALADRREAETLGKKYEEKYK-------QVAEIASKLTIEDA-------KFRELQERKMELHQAIVNMERGGS 688 (1123)
Q Consensus 623 eLne~~eq~selkreLqsLR~kyEee~K-------qV~~LEsQLavlEa-------~LqdiQ~EL~ELeqeLqklq~g~~ 688 (1123)
+|.++.+++.+...+|+++..++..... .+++|+++|..++. .+.++...+.+++.+|..+.....
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~ 346 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE 346 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3444444444444444444444444332 35566666655544 355666677777777777774444
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 689 ADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 689 ~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
.-..|++++..+..++.++..+|..
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555555555544
No 374
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.40 E-value=3.2 Score=41.58 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001211 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRC 620 (1123)
Q Consensus 588 eLAnLenQied~~Ek~~~lrsQmQELl~yKsra 620 (1123)
+|.++-++|..+.+++..+..+.+.|...+.++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333344444444444444443
No 375
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.39 E-value=5.7 Score=49.24 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 659 LTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
|+.+...+.+++.+...|+.++.+..
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445556666677777777766444
No 376
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.36 E-value=4 Score=51.26 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=31.4
Q ss_pred HHHH-HHHHhCcccccceeeecCCCcCCCcccccccchhhhhhccccCCCcc
Q 001211 710 ALTE-RCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDAGFGNE 760 (1123)
Q Consensus 710 qL~E-~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~wd~~~d~~f~~~ 760 (1123)
+++| .|+.|||..+ .|||-=+ =||-++++|.--=..+. -||.-+
T Consensus 451 ~vR~~LC~~L~v~~~-----~mPFAGE-LI~~~~~~WE~~~qRiL-~GF~~~ 495 (1104)
T COG4913 451 QVRENLCQDLGVSPR-----DMPFAGE-LIDPNNAEWEPVVQRIL-GGFAAE 495 (1104)
T ss_pred HHHHHHHHHcCCChh-----hCCcccc-ccCCCcccchHHHHHHh-hhchhh
Confidence 3444 8999999876 7999877 78999999975433333 367633
No 377
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.35 E-value=4 Score=43.99 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
...++..+.+|+.-|.++.+.+... ..+.+++.++......+++.+..+|..+-.+|.+.+.+...-..
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~-----------k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEER-----------KKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777666664333332 23333333333344455555555555555555555444444444
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 683 MERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 683 lq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
.. .+...||..++.|+.++..++-+.+.
T Consensus 157 ~~---~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 157 KD---KEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 55566667777777777776665543
No 378
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=92.35 E-value=3 Score=49.08 Aligned_cols=139 Identities=14% Similarity=0.265 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREK--IEFYRSKMQELVLYKSRC-----DNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek--~~~lrsQmQELl~yKsra-----eqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEs 657 (1123)
+.+.+.+|.+.+..+... ++.++.++.+|...-..+ ..+...+..+.+.++..|+.++ +|.+..++++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~-~l~~~~~e~~~~~e 83 (367)
T PRK00578 5 ISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLE-ELRQRLDDLEELLE 83 (367)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334455555555444433 455556666666544432 1223333334444444444444 34444444443333
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHh-------hcCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHhCccccc
Q 001211 658 KLTI--EDAKFRELQERKMELHQAIVNME-------RGGSADGLLQVRA----DRIQSDLEELLKALTERCKKHGIDVKS 724 (1123)
Q Consensus 658 QLav--lEa~LqdiQ~EL~ELeqeLqklq-------~g~~~n~~Lqer~----~~in~el~eL~kqL~E~~k~lgvk~k~ 724 (1123)
=+.. -+.-+..++.++.+|+.+|.+++ .-...|..|+-|+ .+..-=..+|-+-+..||...|+++.+
T Consensus 84 ll~~e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~ev 163 (367)
T PRK00578 84 LAEEEDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEV 163 (367)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2211 01122333344444444443333 1223344444333 222333456666678889998888775
No 379
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.34 E-value=6.7 Score=47.86 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhcCCC-----------chhHHHHHHHHH
Q 001211 644 KYEEKYKQVAEIASKLTIEDAKFRELQERKME-----------LHQAIVNMERGGSA-----------DGLLQVRADRIQ 701 (1123)
Q Consensus 644 kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~E-----------LeqeLqklq~g~~~-----------n~~Lqer~~~in 701 (1123)
.|-+.+++..+++.+|..+...++..+.++.+ -+.-|+.|+.+... -..|+...+.++
T Consensus 208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHH
Confidence 56666677777777765553333333333322 23334455541111 356777777777
Q ss_pred HHHHHHHHHH
Q 001211 702 SDLEELLKAL 711 (1123)
Q Consensus 702 ~el~eL~kqL 711 (1123)
.++..|+.||
T Consensus 288 ee~~~l~~Qi 297 (511)
T PF09787_consen 288 EEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 380
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=92.33 E-value=3.3 Score=41.85 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
+..+.+++..+.+++.....++..+....+.|..... ..+..+...+..|..+++.-.+.+......|.
T Consensus 35 ~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~----------~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 103 (213)
T cd00176 35 VEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH----------PDAEEIQERLEELNQRWEELRELAEERRQRLE 103 (213)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554333334444444444433221 12233445555555555555554444444443
No 381
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.33 E-value=8.6 Score=43.25 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 600 REKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1123)
Q Consensus 600 ~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1123)
+|-++-|.+||.+|......++- +...++.+++.++.+.+.+..|--..+++| |..|.+....+.+|+.-
T Consensus 44 rE~EaelesqL~q~etrnrdl~t-------~nqrl~~E~e~~Kek~e~q~~q~y~q~s~L---eddlsqt~aikeql~ky 113 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLET-------RNQRLTTEQERNKEKQEDQRVQFYQQESQL---EDDLSQTHAIKEQLRKY 113 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34466777777777666555532 333445555666656555555544444443 33344444444444444
Q ss_pred HHHHh
Q 001211 680 IVNME 684 (1123)
Q Consensus 680 Lqklq 684 (1123)
|.+|+
T Consensus 114 iReLE 118 (333)
T KOG1853|consen 114 IRELE 118 (333)
T ss_pred HHHHH
Confidence 44444
No 382
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=1.2 Score=54.85 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 001211 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSD 703 (1123)
Q Consensus 624 Lne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~e 703 (1123)
+..+..++..++++++.|+.++++..+.+.+|+++|..+...+... ....-++..++ .....|+.++.+-...
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~----~~~~rei~~~~---~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK----VRKDREIRARD---RRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3334444555566666666666666677777777776553333211 11112222222 3333444666666677
Q ss_pred HHHHHHHHHHHHHHhCccc
Q 001211 704 LEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 704 l~eL~kqL~E~~k~lgvk~ 722 (1123)
+++|+..|++.-+...+..
T Consensus 497 ve~L~~~l~~l~k~~~lE~ 515 (652)
T COG2433 497 VEELERKLAELRKMRKLEL 515 (652)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 7888888888776655443
No 383
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.26 E-value=3.9 Score=40.92 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001211 700 IQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 700 in~el~eL~kqL~E~~k~l 718 (1123)
++..+.+++.+|++..+.+
T Consensus 97 l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 97 LREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333444444444443333
No 384
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.23 E-value=0.43 Score=49.57 Aligned_cols=55 Identities=24% Similarity=0.264 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 001211 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK--FRELQERKMELHQAIVNME 684 (1123)
Q Consensus 630 q~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~--LqdiQ~EL~ELeqeLqklq 684 (1123)
+..++..+|..|+.++.+..+++..|++.|+.+... ..+++.++.+|++++.+++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455556666655555556666666666666554 3455555555555555555
No 385
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.23 E-value=3.9 Score=52.38 Aligned_cols=50 Identities=10% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 001211 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kq 710 (1123)
..++..+++++.+..++-.+|.+.+.+. .....++.+.++...++++.+.
T Consensus 573 ~~a~~~l~~a~~~~~~~i~~lk~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 573 KEAQQAIKEAKKEADEIIKELRQLQKGG-YASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhHHHHHHHHHHHHHhhhh
Confidence 3445667777777766666666543111 1112344444455555554443
No 386
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=92.21 E-value=2.6 Score=53.10 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 601 EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1123)
Q Consensus 601 Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~L 666 (1123)
++++.++.++++|....-+|-..-.-++..+ +++.+...+|.++|+..|.++.|-.++..+|+.+
T Consensus 968 aeLe~~~ael~eleqk~le~~eDea~aRh~k-efE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 968 AELEKEFAELIELEQKALECKEDEAFARHEK-EFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777766633322333333 3677777778888888888887777777776663
No 387
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.19 E-value=0.13 Score=59.07 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFREL 669 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lqdi 669 (1123)
+.|...+..+..++..+...++.|.........+|+++...+..++-.|..|. ..|..|...|...+..|.++
T Consensus 45 ~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~ls-------ssVs~lS~~ls~h~ssIS~L 117 (326)
T PF04582_consen 45 ASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLS-------SSVSSLSSTLSDHSSSISDL 117 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHhhhhhhhhhhhhHHHH
Confidence 33333333333333444444444444444444444444444444444444444 67777777777777777777
Q ss_pred HHHHHHHHHHHHHHh
Q 001211 670 QERKMELHQAIVNME 684 (1123)
Q Consensus 670 Q~EL~ELeqeLqklq 684 (1123)
|..++.|.-+|..||
T Consensus 118 qs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 118 QSSVSALSTDVSNLK 132 (326)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhh
Confidence 777777777777666
No 388
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.16 E-value=2.2 Score=48.91 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
+|+.|...|..+|..|.+++.++.+...++.. +|+-++.|+.++++|+.+|.++.++
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr----------~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELER----------QKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555444444333 3456667778888888888776554
No 389
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.14 E-value=3.8 Score=49.16 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG-KKY------EEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR-~ky------Eee~KqV~~LEsQLavlEa~LqdiQ~EL~EL 676 (1123)
.+|.++.++|+.+..+++-- -++ +.+++++|+.|- -+| -+.-+.+.+|+.-|+..+..|+..+.++.-|
T Consensus 341 ~yLe~kvkeLQ~k~~kQqvf-vDi---inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetL 416 (527)
T PF15066_consen 341 LYLEKKVKELQMKITKQQVF-VDI---INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETL 416 (527)
T ss_pred HHHHHHHHHHHHHhhhhhHH-HHH---HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666666666555322 222 123445554431 111 1112344555556666666666666666667
Q ss_pred HHHHHHHhhcCCCchhHHHHH
Q 001211 677 HQAIVNMERGGSADGLLQVRA 697 (1123)
Q Consensus 677 eqeLqklq~g~~~n~~Lqer~ 697 (1123)
+-+|.+++ ..-..||||.
T Consensus 417 qlelkK~k---~nyv~LQEry 434 (527)
T PF15066_consen 417 QLELKKIK---ANYVHLQERY 434 (527)
T ss_pred HHHHHHHh---hhHHHHHHHH
Confidence 77776666 5556666664
No 390
>PRK10869 recombination and repair protein; Provisional
Probab=92.11 E-value=5.7 Score=48.92 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
+.++-..+.+++++|..+......-..|++++..+..++.++..+|.+
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555677777777644445556666666666666666666654
No 391
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.11 E-value=11 Score=43.56 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 001211 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1123)
Q Consensus 630 q~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~k 709 (1123)
++..+...-..||..+.-=....++++..|+--...|..-+.++..+.-.+.+++ .+|..++.|.+..|..|-+|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklE---KE~~~~k~k~e~~n~~l~~m~e 279 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLE---KENQTWKSKWEKSNKALIEMAE 279 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444444444444445555555556667777888888888888999 9999999999999988888776
Q ss_pred HHHH
Q 001211 710 ALTE 713 (1123)
Q Consensus 710 qL~E 713 (1123)
.-..
T Consensus 280 er~~ 283 (309)
T PF09728_consen 280 ERQK 283 (309)
T ss_pred HHHH
Confidence 6544
No 392
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.09 E-value=2 Score=52.17 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQ 670 (1123)
Q Consensus 638 LqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ 670 (1123)
+..|+.+.+....++..|+.||..++..+++++
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e 308 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLE 308 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444333333
No 393
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=92.06 E-value=2.7 Score=40.68 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 001211 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1123)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k 723 (1123)
++...+..++..+.++.++..+|+..++++. +|+.-=++|+++..+|-+||+.+-.|+|
T Consensus 39 ~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id-----------~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 39 KMKDIAAGLEKNLEDLNQKYEELQPYLQQID-----------QIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444444444443 2222223445666677778887776665
No 394
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.05 E-value=3.2 Score=51.13 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHH
Q 001211 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVA------EIAS 657 (1123)
Q Consensus 584 dL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~------~LEs 657 (1123)
.+.++|..++.+-.+..++.++|+.|++||..-.=+.+ |..++.++.. .--+.+.|...+.+-+..+. ++..
T Consensus 168 ~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g-E~e~L~~e~~-rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~ 245 (557)
T COG0497 168 QARRELEDLQEKERERAQRADLLQFQLEELEELNLQPG-EDEELEEERK-RLSNSEKLAEAIQNALELLSGEDDTVSALS 245 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhCCCCchhHHH
Q ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH---HHHHHHHHHH---HHHHhCcc
Q 001211 658 KLTIEDAKF----------RELQERKMELHQAIVNMERGGSADGLLQVRADRIQSD---LEELLKALTE---RCKKHGID 721 (1123)
Q Consensus 658 QLavlEa~L----------qdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~e---l~eL~kqL~E---~~k~lgvk 721 (1123)
.|......| +.+.+.|.+.+-+|..+. ..|+.-++++..+ |++++.-|.. .|++||+.
T Consensus 246 ~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~------~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~ 319 (557)
T COG0497 246 LLGRALEALEDLSEYDGKLSELAELLEEALYELEEAS------EELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVT 319 (557)
T ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred c
Q 001211 722 V 722 (1123)
Q Consensus 722 ~ 722 (1123)
+
T Consensus 320 ~ 320 (557)
T COG0497 320 I 320 (557)
T ss_pred H
No 395
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=92.04 E-value=17 Score=38.12 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELH 677 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELe 677 (1123)
+.+|..||++||..-++++-|-..+.-.|-.|..+.+..++..
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEkn 125 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667766666666666666555544444444444444333
No 396
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=92.00 E-value=7.1 Score=46.72 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001211 645 YEEKYKQVAEIASKLTI-EDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 645 yEee~KqV~~LEsQLav-lEa~LqdiQ~EL~ELeqeLq 681 (1123)
++....+++.++.+|.. .+..|+..+++|..|.+.|.
T Consensus 302 L~~~~qrLd~L~~RL~~a~~~~L~~k~~rL~~L~~rL~ 339 (432)
T TIGR00237 302 LALQQLQFEKLEKRKQAALNKQLERTRQKKTRLTKRLT 339 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555432 24445555555555544443
No 397
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=0.21 Score=57.05 Aligned_cols=73 Identities=21% Similarity=0.385 Sum_probs=61.3
Q ss_pred CCCHH-HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHHHH
Q 001211 400 KMKPS-DIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1123)
Q Consensus 400 ~ISpe-Dk~kY~~IF~slDkD~DG~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI~~ 472 (1123)
.++++ -+.+...||.++|.++||+|+-.|++..++.+ +.-.....+-|...|.++||.|+++|+..+++-...
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~ 144 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD 144 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc
Confidence 34554 45668999999999999999999999988865 666777888889999999999999999998886543
No 398
>PF15456 Uds1: Up-regulated During Septation
Probab=91.94 E-value=2.2 Score=43.14 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=53.1
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-----------HHHHHhHHHHHHHHH
Q 001211 575 ADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT-----------ERALADRREAETLGK 643 (1123)
Q Consensus 575 sL~~~qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~-----------eq~selkreLqsLR~ 643 (1123)
-|+.+ |+.+|.+++.-|++.+ ++++.++. |+.+...+-..|.... +...+.+.++..+.
T Consensus 18 iLs~e-EVe~LKkEl~~L~~R~-------~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~- 87 (124)
T PF15456_consen 18 ILSFE-EVEELKKELRSLDSRL-------EYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESD- 87 (124)
T ss_pred ccCHH-HHHHHHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHH-
Confidence 34442 6777888888888888 44444444 4443333433333331 12223344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 644 KYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 644 kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
+.|+++..+|..+|..+..++.+|-+=.+++..+
T Consensus 88 ------rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~l 121 (124)
T PF15456_consen 88 ------RKCEELAQELWKLENRLAEVRQRLLEHTAAVLQL 121 (124)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666777777777777766666554
No 399
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=91.90 E-value=7 Score=40.56 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 653 AEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
--+|..+...+..++.+|+-+..++..|++|+
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le 124 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLE 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 55555566667777777777777777777766
No 400
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.89 E-value=8.7 Score=46.76 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 001211 653 AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRI 700 (1123)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~i 700 (1123)
+.++..+..+|..+...-+.+.|-+++|++++..+..+..+++-....
T Consensus 271 ~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 271 RQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 444444555555555555666677777777777666666666655544
No 401
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=91.87 E-value=2.8 Score=37.76 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 665 KFRELQERKMELHQAIVNMER-GGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 665 ~LqdiQ~EL~ELeqeLqklq~-g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
.+...+.++..|.+.-+.+.. +......|+++++.|+..-+.|...+.+|++.|
T Consensus 49 ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 49 EIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333334444444443333322 124568899999999999999999999998875
No 402
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=91.87 E-value=11 Score=43.65 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001211 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV--- 681 (1123)
Q Consensus 605 ~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq--- 681 (1123)
.++.-+.+++..-.....+-..+++.-.++...+..|.-.|++..+.++.+.+++...+.+-..+..+...|.+.+.
T Consensus 113 ~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~ 192 (391)
T KOG1850|consen 113 QFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEAS 192 (391)
T ss_pred HHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333334444455777778888888888888888888887444443334444444444333
Q ss_pred --HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 682 --NMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1123)
Q Consensus 682 --klq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~l 718 (1123)
.-+.|-.++..+|.-+......=..|+.+|..|-.+|
T Consensus 193 ~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKy 231 (391)
T KOG1850|consen 193 IQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKY 231 (391)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222445666666666666666667777776665544
No 403
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.83 E-value=0.048 Score=68.11 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001211 603 IEFYRSKMQELVLYKSRC 620 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsra 620 (1123)
++.|++|++++..||.+.
T Consensus 317 ve~YKkKLed~~~lk~qv 334 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQV 334 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666655
No 404
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.82 E-value=1.2 Score=56.03 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHH
Q 001211 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTI----------------------------EDAKFRELQERKMELHQA 679 (1123)
Q Consensus 628 ~eq~selkreLqsLR~kyEee~KqV~~LEsQLav----------------------------lEa~LqdiQ~EL~ELeqe 679 (1123)
.++...++.++..|+.+++.-.+.++.|+.+|.. ...+|..++.|...|.+.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555666666655432 245577778888888888
Q ss_pred HHHHhhcCCCch---------hHHHHHHHHHHHHHHHHHHH
Q 001211 680 IVNMERGGSADG---------LLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 680 Lqklq~g~~~n~---------~Lqer~~~in~el~eL~kqL 711 (1123)
|..+..|+.... ..+..+..+..+++.+++.+
T Consensus 582 l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~ 622 (722)
T PF05557_consen 582 LRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRN 622 (722)
T ss_dssp HHHHTTTT----------------HHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 877775554321 22334556666666666555
No 405
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.80 E-value=3.6 Score=46.41 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1123)
+..++.-.|+++...+..-+.|+++...-+++..+|+.-+.+||...|-++.|++-----=..+.+.+++|++|++-
T Consensus 107 Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~ 183 (338)
T KOG3647|consen 107 EKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQR 183 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444445555555444445555555555555544444444432111112244445555555444
No 406
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.79 E-value=4.6 Score=46.42 Aligned_cols=32 Identities=16% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
.++.++..+|++++..|.+.+++..+++..|.
T Consensus 134 ~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~ 165 (301)
T PF06120_consen 134 RKLAEATRELAVAQERLEQMQSKASETQATLN 165 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555554444444444
No 407
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.75 E-value=0.05 Score=69.46 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 583 tdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
..+..+|..|.++|+...+++..++..-+.|......+...+......+.++++....|..+.++...++++++..|..+
T Consensus 408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~ 487 (859)
T PF01576_consen 408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE 487 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444433333333333333333332222333333334455555556666666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHHH----HHHHHHhCcccccceee
Q 001211 663 DAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKAL----TERCKKHGIDVKSHAVI 728 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLq-klq~g~~~n~~Lqer~~~in~el~eL~kqL----~E~~k~lgvk~k~~~~i 728 (1123)
|.....++-+|+++.+++. .+. ..+..+.+.-+..+..|.+|+..| ..+..++-+|=|++..|
T Consensus 488 E~~~lRl~~el~~~r~e~er~l~---eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l 555 (859)
T PF01576_consen 488 EQKKLRLQVELQQLRQEIERELQ---EKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDL 555 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777775 333 223333333344555556666665 33566667777776655
No 408
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=91.73 E-value=5.8 Score=46.75 Aligned_cols=14 Identities=0% Similarity=0.091 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHhh
Q 001211 437 RLPREVLKQVWDLS 450 (1123)
Q Consensus 437 gLP~e~L~qIW~LA 450 (1123)
+-++....+|=...
T Consensus 76 ~ADk~Q~~rIkq~F 89 (455)
T KOG3850|consen 76 NADKQQVARIKQVF 89 (455)
T ss_pred ccchhhhHHHHHHH
Confidence 45555555554443
No 409
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.73 E-value=8.3 Score=45.56 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 639 ETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERK----MELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 639 qsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL----~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+.||+.|.+++ ..|+-.|.++-..+.++=-+. +.|+++-+.++++..+|..|-.+-.++|--|..-..+|
T Consensus 413 eaLRrQyleel---qsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrL 486 (593)
T KOG4807|consen 413 EALRRQYLEEL---QSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL 486 (593)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 33555555443 344444555544444443333 34444555666666777777666555554444433344
No 410
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=7.3 Score=47.69 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1123)
Q Consensus 606 lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQL 659 (1123)
++....+|..+|.++-|+|.+.++++..++.+...|..+||+-...-+.|+..+
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~ 639 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRM 639 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444455566666666666777766666666666667777766666556666554
No 411
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=91.70 E-value=8.9 Score=44.63 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCCcCCCcccccccchh
Q 001211 668 ELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDE 747 (1123)
Q Consensus 668 diQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e 747 (1123)
+.+.++.+|+.+++. .++-.....++++..++..+++....+++|-..+. ++=-.|.-|...+-++|-|
T Consensus 94 ~~~~q~~~l~~~~~~--~~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d---------~~q~dw~~G~~~a~~~y~d 162 (332)
T TIGR01541 94 TFRKQQRDLNKAMTA--KGLAGSDLYKEQLAAIKAALNEALAELHAYYAAED---------ALQGDWLAGARSGLADYGE 162 (332)
T ss_pred HHHHHHHHHHHhhhh--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhHHHHHHHHHHHHHH
Confidence 334445555555543 24556778888888888888888888877555422 2234688888877777775
Q ss_pred h
Q 001211 748 D 748 (1123)
Q Consensus 748 ~ 748 (1123)
+
T Consensus 163 ~ 163 (332)
T TIGR01541 163 T 163 (332)
T ss_pred H
Confidence 3
No 412
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.62 E-value=15 Score=40.24 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 001211 674 MELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 674 ~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kq 710 (1123)
.-|++.|.+.+ -...+|++.+.+-..+.+||.+=
T Consensus 164 ~aLqa~lkk~e---~~~~SLe~~LeQK~kEn~ELtkI 197 (207)
T PF05010_consen 164 LALQASLKKEE---MKVQSLEESLEQKTKENEELTKI 197 (207)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333 44555666666666666655543
No 413
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=91.54 E-value=3.8 Score=48.83 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV- 681 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq- 681 (1123)
+..+-.++++|+.....|.++|.++..++.++..+-...-.+|-...-++=+.+..|..+|+...-.+.+|..|.....
T Consensus 192 E~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~ 271 (447)
T KOG2751|consen 192 EERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVF 271 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444444444444444444444333333333333333333333333344455555555555555555554443
Q ss_pred ----HHhhcC---CCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCC
Q 001211 682 ----NMERGG---SAD-------GLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFG 733 (1123)
Q Consensus 682 ----klq~g~---~~n-------~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~g 733 (1123)
.+-..| .-| ....+.-++||+-+.++..-|.-.|.++||+.--=. =+|||
T Consensus 272 n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~--lvp~G 335 (447)
T KOG2751|consen 272 NATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYR--LVPMG 335 (447)
T ss_pred hheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceee--eeccc
Confidence 111111 111 123456688999999999999999999888754332 23555
No 414
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.48 E-value=9.6 Score=46.40 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001211 691 GLLQVRADRIQSDLEELLK 709 (1123)
Q Consensus 691 ~~Lqer~~~in~el~eL~k 709 (1123)
..|+|+|+.....++++.+
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3555666655555555443
No 415
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.45 E-value=0.056 Score=67.60 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREA 638 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreL 638 (1123)
+.+++.+++.++.....+...+..+++.|......+..+|.+..++...++.++
T Consensus 91 le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~l 144 (722)
T PF05557_consen 91 LEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKL 144 (722)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444455555555555555555555544444444443
No 416
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=91.45 E-value=3.3 Score=47.21 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=61.4
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 588 KVDEREKVILD----SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (1123)
Q Consensus 588 eLAnLenQied----~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlE 663 (1123)
.|.+|.++|.. |...+..+.+|++-|..+=.++..+|.+++++-.+....+.+-...++++..+++.+.+++...-
T Consensus 249 ~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G 328 (384)
T KOG0972|consen 249 YLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQG 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445554433 44447778888888877777787888888777766676776666666666666666665554332
Q ss_pred H------HHHHHHHHHHHHHHHHHHHh
Q 001211 664 A------KFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 664 a------~LqdiQ~EL~ELeqeLqklq 684 (1123)
+ -|..|+.-+..|+++.++|.
T Consensus 329 ~~msDGaplvkIkqavsKLk~et~~mn 355 (384)
T KOG0972|consen 329 AKMSDGAPLVKIKQAVSKLKEETQTMN 355 (384)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHhhh
Confidence 2 25666666666666665443
No 417
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=91.45 E-value=3.5 Score=50.80 Aligned_cols=98 Identities=12% Similarity=0.206 Sum_probs=44.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH---------HHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET---------LGKKYEEKYKQ 651 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek-~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqs---------LR~kyEee~Kq 651 (1123)
..+|...+..|..++++++.+ -+.+..++.+......++.+-+.+ ..++.++|+. ++.++..-.++
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~----~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e 84 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIER----SKSLAREINDLLQSEIENEIQPQLRDAAEE 84 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 345555555555555555544 334455555555544444332222 2233444422 33344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
++.|..+|...+.-+.-+ ++|.++.+.|.+.+
T Consensus 85 ~~~L~~eL~~~~~~l~~L-~~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 85 LQELKRELEENEQLLEVL-EQLQEIDELLEEVE 116 (593)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555555554444443222 24444444444443
No 418
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=91.44 E-value=3.9 Score=51.66 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHH--HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCC---CcCCCcccc
Q 001211 669 LQERKMELHQAIVN--MERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPF---GWQPGIQEG 741 (1123)
Q Consensus 669 iQ~EL~ELeqeLqk--lq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~---gw~~~~~e~ 741 (1123)
++++.+-|.+++.+ ...+..-|..||++|.++|.|++ +.+.+--+-+||+++.-.-.|++- .|-++.+++
T Consensus 576 ~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~---~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~K 650 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIE---LELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEK 650 (762)
T ss_pred HHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHH---HHHHHHHhccCchhhhhhhhhhcccccCCChhhHHH
Confidence 34444444444443 22245678899999999998766 344444456777776333334433 255555444
No 419
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.40 E-value=14 Score=44.21 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=67.8
Q ss_pred hhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHH-----------------HHHHHhHHHHHHHHHH
Q 001211 583 TTAGKKVDEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEIT-----------------ERALADRREAETLGKK 644 (1123)
Q Consensus 583 tdL~keLAnLenQied~~Ek-~~~lrsQmQELl~yKsraeqeLne~~-----------------eq~selkreLqsLR~k 644 (1123)
..|+.+.-+|++-+++-.|. .+.|=++|++|+..|.-.+..|.+-- ...+.+++.|.-|+
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~-- 259 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQ-- 259 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHH--
Confidence 45666667777777665555 67888999999998888877775421 12223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 645 YEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 645 yEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
..|..|..+|..++ +..++|++++.+|-..++ .+|.-||+.+.+-=..-+-|-.+|.|
T Consensus 260 -----~EveRlrt~l~~Aq---k~~~ek~~qy~~Ee~~~r---een~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 260 -----AEVERLRTYLSRAQ---KSYQEKLMQYRAEEVDHR---EENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred -----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444443333 234566777777777777 67777776654433223333334433
No 420
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.38 E-value=0.44 Score=41.46 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCCcCHHHHHHHHHHH
Q 001211 423 RITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1123)
Q Consensus 423 ~ISG~Ear~~F~kS--gLP~e~L~qIW~LADiDnDG~LdkdEF~IAMhLI 470 (1123)
+++..|++.+|+.. .+...-...+..-||..++|+|+.+||.-+.+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46889999999977 5777888999999999999999999999887754
No 421
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.31 E-value=1.9 Score=49.62 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVL--YKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~--yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavl 662 (1123)
++++|.+++.++.+.+.++..|+.+-..+.- ......+.+.++..+..+++.++..|+..|.+..=+|..++.++..+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 3444555555554444444444443322111 11112223444444444455555555544444334555555555555
Q ss_pred HHHHHHHHH
Q 001211 663 DAKFRELQE 671 (1123)
Q Consensus 663 Ea~LqdiQ~ 671 (1123)
+..+.+...
T Consensus 255 ~~~i~~e~~ 263 (362)
T TIGR01010 255 RKQIDEQRN 263 (362)
T ss_pred HHHHHHHHH
Confidence 555444333
No 422
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=91.31 E-value=4 Score=38.49 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 001211 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1123)
Q Consensus 635 kreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1123)
+.++..|..++..-..+.++++.+|+..-..++.+++.+-+|+.+-.+++ ..-..||..|..+|..+
T Consensus 10 r~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK-------------~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 10 RQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK-------------QQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhh
Confidence 33333333333333357777777787777888888888888888888888 33455666666666443
No 423
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=91.27 E-value=0.18 Score=55.85 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHh-----cCCCHHHHHHHHHhhCCCCCCCcCHHHHHH
Q 001211 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMS-----WRLPREVLKQVWDLSDQDSDSMLSLREFCF 465 (1123)
Q Consensus 404 eDk~kY~~IF~slDkD~DG~ISG~Ear~~F~k-----SgLP~e~L~qIW~LADiDnDG~LdkdEF~I 465 (1123)
.-+.+...||.+.|.+.||+|+..|++.-+++ +.-..++-+..++.+|+|+||.|..+||-+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 45678999999999999999999999877663 244556666778899999999999999965
No 424
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=91.27 E-value=0.46 Score=57.31 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=56.8
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC-----HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001211 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLP-----KQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1123)
Q Consensus 5 ~~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SGLP-----~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LV 70 (1123)
+.....+-|..+| |++|+|+..++..+|.+.+++ .+++++|...++.|.+|.++++||+.++.-+
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3456778899999 999999999999999998765 5999999999999999999999999855433
No 425
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=91.26 E-value=6.2 Score=47.09 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 001211 631 ALADRREAETLGKKYEEKYKQV--------AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS 702 (1123)
Q Consensus 631 ~selkreLqsLR~kyEee~KqV--------~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~ 702 (1123)
...++..+..+++.+.++.+++ +.++++++.++..+++++.++..+-...+++. .|+.+++-.+.
T Consensus 315 ~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~-------~L~Re~~~~r~ 387 (458)
T COG3206 315 LVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLR-------ELEREAEAARS 387 (458)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHH-------HHHHHHHHHHH
Confidence 3344555555555555544443 33444444444444444444444444444443 67777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001211 703 DLEELLKALTERCK 716 (1123)
Q Consensus 703 el~eL~kqL~E~~k 716 (1123)
.++.|....+|-..
T Consensus 388 ~ye~lL~r~qe~~~ 401 (458)
T COG3206 388 LYETLLQRYQELSI 401 (458)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666433
No 426
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.25 E-value=11 Score=43.47 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 001211 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1123)
Q Consensus 666 LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1123)
+.++..++.++..+|...+ ..-...+.++..++..|+.+..+..
T Consensus 129 ~~~~t~~la~~t~~L~~~~---~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQ---ERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666544 2223333444444444444444443
No 427
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=91.21 E-value=5.5 Score=46.81 Aligned_cols=124 Identities=11% Similarity=0.158 Sum_probs=65.0
Q ss_pred hhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh--------------HHHHHHHHHHHH
Q 001211 582 STTAGKKVDERE-KVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALAD--------------RREAETLGKKYE 646 (1123)
Q Consensus 582 atdL~keLAnLe-nQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~sel--------------kreLqsLR~kyE 646 (1123)
+.+|.++|+-|+ +.+..+..++..|..+|++|...|....+. .+...+|.++ ..-|++|+ .+.
T Consensus 248 l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~-~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~ 325 (388)
T PF04912_consen 248 LNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKED-AEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLK 325 (388)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHH
Confidence 445555666553 344445566677777777776555433111 1111122211 11122222 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001211 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 647 ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1123)
..=.++...-+.|..+|....+++.+|...++.|.+++ ..+++.+..|+..+..|+..+..
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve------~~~~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVE------EKFKENMETIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112223334466667777777777777777777777 23777777777777777666543
No 428
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.19 E-value=4.5 Score=52.38 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 622 NRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 622 qeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1123)
.+|++...++.+.-.++...++++++.+++...+..+-.-.+.++...+..|.+++.+|++
T Consensus 297 ~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 297 RELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333333333333333334444444444433333333333333344444445555555543
No 429
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.16 E-value=3.7 Score=54.37 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERAL 632 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~s 632 (1123)
++.++..++.+.....+..+.++.|.+.+..+..+.++++..+.+.++
T Consensus 185 l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 185 LKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444666666666666666666666666665555
No 430
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.14 E-value=11 Score=47.30 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH--HHHHhCcccccceeeecCCC
Q 001211 690 DGLLQVRADRIQSDLEELLKALTE--RCKKHGIDVKSHAVIELPFG 733 (1123)
Q Consensus 690 n~~Lqer~~~in~el~eL~kqL~E--~~k~lgvk~k~~~~ielp~g 733 (1123)
.+.|++|+++.+ .++++..+|.. --+.++.+++ +...||++=
T Consensus 213 ~~~l~e~~~~~q-q~a~~~~ql~~~~ele~i~~~~~-dqlqel~~l 256 (716)
T KOG4593|consen 213 QASLEERADHEQ-QNAELEQQLSLSEELEAINKNMK-DQLQELEEL 256 (716)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHHhhhHHHHHHHHHH-HHHHHHHHH
Confidence 345555555432 34555555533 3344444555 566666653
No 431
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.09 E-value=11 Score=47.33 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHH---HHHHHHHHHHHHHHHH
Q 001211 670 QERKMELHQAIVNMERGGSADGLLQVRAD---RIQSDLEELLKALTER 714 (1123)
Q Consensus 670 Q~EL~ELeqeLqklq~g~~~n~~Lqer~~---~in~el~eL~kqL~E~ 714 (1123)
+.+|++|+..++++.+-..+-..|+++-+ .++.|++.|+..|.+.
T Consensus 247 ~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 247 KDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRL 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444433355555555433 4566777777766543
No 432
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.06 E-value=10 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHh
Q 001211 696 RADRIQSDLEELLKALTE---RCKKH 718 (1123)
Q Consensus 696 r~~~in~el~eL~kqL~E---~~k~l 718 (1123)
|-+.+..++.+|+.-|++ ||+-+
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666633 55543
No 433
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.04 E-value=3.1 Score=44.93 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 658 KLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
++..|+..-...|.+|.+|+.+|..|
T Consensus 155 ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 155 EAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444443333
No 434
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=91.01 E-value=17 Score=35.92 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 001211 595 VILDSREKIEFYRSKMQELVLYKSRCDNRLNE 626 (1123)
Q Consensus 595 Qied~~Ek~~~lrsQmQELl~yKsraeqeLne 626 (1123)
++............++++|..|+....+++..
T Consensus 21 ~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 52 (141)
T TIGR02473 21 ELAKAQAEFERLETQLQQLIKYREEYEQQALE 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333467777788888888877666554
No 435
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.91 E-value=9.1 Score=46.01 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001211 693 LQVRADRIQSDLEELLKALTERCKKHGIDV 722 (1123)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E~~k~lgvk~ 722 (1123)
+++-|-.|..|.-+|++|++-.+..++--+
T Consensus 401 q~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 401 QEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344555566666666666665555544333
No 436
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=11 Score=41.99 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001211 658 KLTIEDAKFRELQERKMELHQ 678 (1123)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeq 678 (1123)
.|.+++..++.+++|+..+.+
T Consensus 101 elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 101 ELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 444444444444444444333
No 437
>PLN02939 transferase, transferring glycosyl groups
Probab=90.89 E-value=4 Score=53.16 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001211 621 DNRLNEITERALADRREAETLGKKYEEKYK 650 (1123)
Q Consensus 621 eqeLne~~eq~selkreLqsLR~kyEee~K 650 (1123)
..+|..++++-.-++.+++.|+.++.++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAE 254 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 567888887777789999999988776653
No 438
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.84 E-value=11 Score=46.41 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=4.2
Q ss_pred eeeecCCC
Q 001211 726 AVIELPFG 733 (1123)
Q Consensus 726 ~~ielp~g 733 (1123)
..|.||..
T Consensus 206 ~~v~lp~d 213 (514)
T TIGR03319 206 SVVNLPND 213 (514)
T ss_pred eeEEcCCh
Confidence 44566653
No 439
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.83 E-value=3.4 Score=52.03 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001211 698 DRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 698 ~~in~el~eL~kqL~E~~k~ 717 (1123)
+++.-++.+|+=.++.+|..
T Consensus 303 ~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 303 RKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHhhcCceEEEEe
Confidence 34444555555555555544
No 440
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.77 E-value=3.8 Score=45.08 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 001211 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (1123)
Q Consensus 655 LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk 721 (1123)
+++....+.+.+..+++|+++.+.+|.+++ .....|+++++.++.|.+.|.+..+..+.....+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~---~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQ---KKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 666667777778888888888888887777 8888888999999988888887766666554443
No 441
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.72 E-value=5.8 Score=52.80 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 641 LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 641 LR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
...++.+.+..+.+|+.++..+...+..+..++.+|.+.++
T Consensus 869 ~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~ 909 (1294)
T KOG0962|consen 869 EKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ 909 (1294)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 33344444444444555544444444444444444444444
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.69 E-value=11 Score=49.89 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCC--------------CchhHHHHHHHHHHHHHHHHHH
Q 001211 646 EEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN-MERGGS--------------ADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 646 Eee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk-lq~g~~--------------~n~~Lqer~~~in~el~eL~kq 710 (1123)
++..+++..++.++..++..+..++.++..++.++.+ +..-+- +-..|+++|+..+..+..+...
T Consensus 720 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 799 (1047)
T PRK10246 720 RQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTL 799 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555543 221111 1123455555555555555554
Q ss_pred HHHH
Q 001211 711 LTER 714 (1123)
Q Consensus 711 L~E~ 714 (1123)
|.++
T Consensus 800 ~~~~ 803 (1047)
T PRK10246 800 VTQT 803 (1047)
T ss_pred HHHH
Confidence 4444
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=8.2 Score=47.30 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH------------------HHHHHHHHH
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG------------------KKYEEKYKQ 651 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR------------------~kyEee~Kq 651 (1123)
.+|..++++.-+.++.++++.+-+..-..+..+|..++.++...+.+.++.|+ +|++---++
T Consensus 591 ~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~ 670 (741)
T KOG4460|consen 591 KLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQ 670 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHH
Confidence 33333333333334444444444444444444455555444444444444432 233223356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
++.|++.|+.+..+++.-|.-+.+..++++|-+ -..=..+++.|++-|.+|...+.+..+.
T Consensus 671 ~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~-----Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~ 731 (741)
T KOG4460|consen 671 LRHLGNAIETVTMKKDKQQQHMEKVLSALPKPT-----YILSAYQRKCIQSILKELGEHIREMVKQ 731 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-----ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888877765555666666666422 1111356677777777777777665544
No 444
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=90.64 E-value=0.6 Score=40.64 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001211 23 RISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1123)
Q Consensus 23 rISG~Ea~~ff~~SG--LP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~L 69 (1123)
|++-.|++.+|+.-+ +.+.-+..++..+|.+++|.|+.+||..-.+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 467789999999975 77888999999999999999999999877664
No 445
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.63 E-value=4.5 Score=51.12 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 001211 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDL 704 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el 704 (1123)
...+...|+.++++-+..++.++-+|+..|-.-+-+.-.|.+-.+||..|+ .-+..||.-+.++=.+|
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~---eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR---ELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc
Confidence 445556666777777777777777776666555555555555555555555 44455555555554443
No 446
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.60 E-value=11 Score=47.40 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLN-EITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLn-e~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lqd 668 (1123)
.+.+..|.++.+.+..+-..+++|..+.....+++. .+++....+.+--...+++|.-.-++|..|..++..-|..+++
T Consensus 179 EET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kd 258 (786)
T PF05483_consen 179 EETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKD 258 (786)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHH
Confidence 344555555566677788888888888877777775 5554443333333333344444445778888888888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 001211 669 LQERKMELHQAIVNME 684 (1123)
Q Consensus 669 iQ~EL~ELeqeLqklq 684 (1123)
+.-.|++-+..+.+++
T Consensus 259 l~~~l~es~~~~~qLe 274 (786)
T PF05483_consen 259 LLLLLQESQDKCNQLE 274 (786)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887777777666
No 447
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=90.52 E-value=7.4 Score=47.49 Aligned_cols=118 Identities=10% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI-ASKLTIEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~L-EsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1123)
....+..++.|..-....+..|.++.+++.++..+|++|..+|+....+++.- -..-...+......+++|..|-..++
T Consensus 393 ~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ 472 (531)
T PF15450_consen 393 ESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQ 472 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555444445555566666666666666666664444444333211 11111112334444555555555555
Q ss_pred HHhhcCCCchhHHHHHHHHHHHH-----HHHHHHHHHHHHHhCcccccc
Q 001211 682 NMERGGSADGLLQVRADRIQSDL-----EELLKALTERCKKHGIDVKSH 725 (1123)
Q Consensus 682 klq~g~~~n~~Lqer~~~in~el-----~eL~kqL~E~~k~lgvk~k~~ 725 (1123)
-++ ..|.- ..|.+|+.+| -.|+..++.--..+|+|+.-+
T Consensus 473 ~~~---e~~~~--rkiaeiqg~l~~~qi~kle~siq~nKtiqn~kfntE 516 (531)
T PF15450_consen 473 LLK---EDNPG--RKIAEIQGKLATNQIMKLENSIQTNKTIQNLKFNTE 516 (531)
T ss_pred Hhc---CCChh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 444 32222 2244444444 455555555556666666443
No 448
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.50 E-value=7.7 Score=43.24 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHhCccccc
Q 001211 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE-RCKKHGIDVKS 724 (1123)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E-~~k~lgvk~k~ 724 (1123)
..+..|+.+....+..-..+..++.+++..|..+. .+.....+.+.+++.++.+.+..+.+ ..+++.|-...
T Consensus 61 e~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~---ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 61 EEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE---EESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHH------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555555555556667778888888888777 55555666666777777777666655 44444443333
No 449
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=90.46 E-value=13 Score=40.56 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (1123)
Q Consensus 624 Lne~~eq~selkreLqsLR~kyEee~KqV~~LEsQ 658 (1123)
...+..........|+..+++|+...++++.+..+
T Consensus 109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~ 143 (236)
T cd07651 109 MEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQ 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333344444556666666666666655555443
No 450
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=90.46 E-value=15 Score=36.15 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 641 LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 641 LR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
..++++++.+.....+..|..+.+.|..++.++..|+..|.+.+
T Consensus 65 A~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 65 AEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555555555554443
No 451
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=90.44 E-value=7 Score=37.25 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001211 661 IEDAKFRELQERKMELHQAIV 681 (1123)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLq 681 (1123)
.++..+..++..+.+|...+.
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 452
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=90.42 E-value=4.1 Score=38.40 Aligned_cols=64 Identities=11% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV 652 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV 652 (1123)
|..++.+++.+......++.+-.++..+-..+-+++..+++.+.+++..-..++.+||++...+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rL 69 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARL 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444445666666666666666666666666666666666666666666665544
No 453
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=90.37 E-value=0.21 Score=55.27 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC-----CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCC
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS-----NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRE 78 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~S-----GLP~~~LaqIW~LAD~d~DG~Ldr~EF~vAM~LValAQ~G~e 78 (1123)
+..+..+|.++|.|.||+|+..|++++++.- .-..++-..-++.+|+|+||.+.-+||-+-. +|-.|+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF----laskghs 173 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF----LASKGHS 173 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH----HhhcCcc
Confidence 3467789999999999999999999998773 2344556667899999999999999997533 3445543
No 454
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=90.31 E-value=30 Score=37.54 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 665 ~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
+++.++..|..+++++.++..+ +.+..+|+..++.+|.+++....+-|+.
T Consensus 116 ~~~~~~~~L~k~~~~~~Kl~~~---~~s~~~K~~~~~~ei~~~e~~~~~a~~~ 165 (216)
T cd07627 116 YWQSAESELSKKKAQLEKLKRQ---GKTQQEKLNSLLSELEEAERRASELKKE 165 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666632 2244567777777777777766555544
No 455
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=10 Score=39.53 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kq 710 (1123)
++.+..++.++.+|...+++++ .+-..|-.|+..+..+++++...
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~---~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQ---QALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555 33333444444444444444443
No 456
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.29 E-value=8.6 Score=45.41 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=48.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 629 eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+++..++|+|+-|...|.+++=....|..+|...+..|++.|.+-++|..--+++.
T Consensus 421 eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn 476 (593)
T KOG4807|consen 421 EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELN 476 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 55667899999999999999999999999999999999999999888876555544
No 457
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.28 E-value=10 Score=45.22 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHHhhCC
Q 001211 437 RLPREVLKQVWDLSDQ 452 (1123)
Q Consensus 437 gLP~e~L~qIW~LADi 452 (1123)
+-++..+.+|=...+-
T Consensus 40 ~aDk~Q~~rIkq~Fek 55 (395)
T PF10267_consen 40 NADKQQAARIKQVFEK 55 (395)
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555556666555553
No 458
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=90.24 E-value=4.2 Score=48.43 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=25.9
Q ss_pred CHHHHHHHHH---HHHhhCCCCCCccCHHHHHHHHH
Q 001211 402 KPSDIQKYSK---VFMEVDTDRDGRITGEQARNLFM 434 (1123)
Q Consensus 402 SpeDk~kY~~---IF~slDkD~DG~ISG~Ear~~F~ 434 (1123)
+.+||--|+. |-..+|.|.+|-|..+|--+||+
T Consensus 60 s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 60 SEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred cccchhhHHHHHHHHHhcccccCCCcccccchHHHH
Confidence 4467777765 45678999999999999888876
No 459
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=0.39 Score=48.15 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHh------CC------CCHHHHHHHHHh----hcCCCCCCcCHHHHHHHH
Q 001211 10 ESFFRRADLDGDGRISGAEAVAFFQG------SN------LPKQVLAQIWMH----ADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 10 e~vF~~lD~DgDGrISG~Ea~~ff~~------SG------LP~~~LaqIW~L----AD~d~DG~Ldr~EF~vAM 67 (1123)
-.+|...|.|++|+|+|-|+...+.- +| .+..+|.+|.+- -|-++||+||..||.++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 35899999999999999999888764 23 345677766554 467899999999999864
No 460
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.23 E-value=13 Score=41.87 Aligned_cols=10 Identities=0% Similarity=-0.051 Sum_probs=4.7
Q ss_pred hhHHHHHHHH
Q 001211 587 KKVDEREKVI 596 (1123)
Q Consensus 587 keLAnLenQi 596 (1123)
..|+.++.++
T Consensus 87 a~l~~~~~~~ 96 (334)
T TIGR00998 87 ANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 461
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.21 E-value=7.6 Score=41.74 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=25.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKS 618 (1123)
Q Consensus 581 EatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKs 618 (1123)
+...+..++..|+.++++++.++..++.+++.+..-+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45556667777777777777777777777777644433
No 462
>COG5293 Predicted ATPase [General function prediction only]
Probab=90.18 E-value=15 Score=44.42 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 001211 603 IEFYRSKMQELVLYKSRC-DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK---------LTIEDAKFRELQER 672 (1123)
Q Consensus 603 ~~~lrsQmQELl~yKsra-eqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQ---------LavlEa~LqdiQ~E 672 (1123)
.....+.+++++.+-.+. +++-.-+.+++.+++++|.++.++++..-++.++.-.= .+++.+...++..+
T Consensus 315 pg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~e 394 (591)
T COG5293 315 PGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGE 394 (591)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhh
Confidence 444555556665554433 33334445666777777777777766666665554432 23444444556666
Q ss_pred HHHHHHHHHHHh
Q 001211 673 KMELHQAIVNME 684 (1123)
Q Consensus 673 L~ELeqeLqklq 684 (1123)
|++|+-.|..++
T Consensus 395 lae~~~rie~l~ 406 (591)
T COG5293 395 LAELEYRIEPLR 406 (591)
T ss_pred HHHHHHhhhHHH
Confidence 666666555444
No 463
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.18 E-value=4.3 Score=49.48 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 605 ~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
.|..++...+..|..++.+|+++..++..++.++..-|.-| |.||.++-.+|..+..+|...+++|+.+|
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY----------E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY----------EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444455555555555544444444444333 34445555555555555555556665555
No 464
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.15 E-value=5.4 Score=48.66 Aligned_cols=88 Identities=11% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1123)
..|.+++.+|...++.++-+.... ..+|+.-.+.++..|.....++..|+.+.++++.|++||.--
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f--------------~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHF--------------YAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888774333322 223333334555555555555566666666666666666644
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 001211 684 ERGGSADGLLQVRADRIQSDLEELLKAL 711 (1123)
Q Consensus 684 q~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1123)
+ .+-+++|+-.-.+|..|..+|
T Consensus 482 r------~NYE~QLs~MSEHLasmNeqL 503 (518)
T PF10212_consen 482 R------RNYEEQLSMMSEHLASMNEQL 503 (518)
T ss_pred H------hhHHHHHHHHHHHHHHHHHHH
Confidence 4 233344444444444444444
No 465
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.14 E-value=7.4 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Q 001211 604 EFYRSKMQELVLYKSRCDNRLNEI 627 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsraeqeLne~ 627 (1123)
..+..+.+.|.....++..-+.++
T Consensus 16 ~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 16 QAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666665554444444
No 466
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.12 E-value=0.52 Score=62.04 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--C-------CHHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001211 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSN--L-------PKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1123)
Q Consensus 6 ~~~Ye~vF~~lD~DgDGrISG~Ea~~ff~~SG--L-------P~~~LaqIW~LAD~d~DG~Ldr~EF~vAM 67 (1123)
-..|.-+|+.+|.+.+|+++-.+++-+|+.-| | |..++..|.+++|++++||+++.+|+..|
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 45788899999999999999999999998853 4 55689999999999999999999998766
No 467
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=90.11 E-value=7.7 Score=44.38 Aligned_cols=26 Identities=4% Similarity=-0.097 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001211 659 LTIEDAKFRELQERKMELHQAIVNME 684 (1123)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklq 684 (1123)
+...+..+...+.++..+++++..++
T Consensus 154 ~~~a~~~~~~a~~~l~~a~~~~~~~~ 179 (346)
T PRK10476 154 VDQARTAQRDAEVSLNQALLQAQAAA 179 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666555
No 468
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=90.08 E-value=12 Score=44.80 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001211 587 KKVDEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK 648 (1123)
Q Consensus 587 keLAnLenQied~~Ek-~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee 648 (1123)
..|.++.+++...... +-.++.-+.+++.-|.+.+..|..+.+++...+.+|..|+..|-.+
T Consensus 256 ~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK 318 (421)
T KOG2685|consen 256 QTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDK 318 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 3455555555443333 5667778888888888888888888888888888888877554433
No 469
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=90.02 E-value=1 Score=51.06 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~ 717 (1123)
+-.|-+.++.|.+.|..|+..+. ..|..||+|+.++..||..|+..+.|+.++
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le---~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLE---KRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667788899999999999 999999999999999999999999997765
No 470
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=90.00 E-value=12 Score=39.19 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001211 641 LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELL-KALTERCK 716 (1123)
Q Consensus 641 LR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~-kqL~E~~k 716 (1123)
.|++++...+.|+.+.-+|.-+-...+.++.++.+-..+..... ++-..|=.|+..+=.+.+.|. +.|.|.++
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEkn---keK~~Lv~~L~eLv~eSE~~rmKKLEELsk 155 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN---KEKAQLVTRLMELVSESERLRMKKLEELSK 155 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444333333333333333222 333334344443333333332 23444444
No 471
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.98 E-value=8.4 Score=44.80 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 001211 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEE 706 (1123)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~e 706 (1123)
|+.++.+++|.+.|+.+|+.++ .+-.+-.|+...+|.||+|
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~---~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQ---QECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHHhHhHHHHHHHHHHHHH
Confidence 4444444444444444444444 2223333444444444444
No 472
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=89.95 E-value=4.9 Score=40.96 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHH
Q 001211 608 SKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (1123)
Q Consensus 608 sQmQELl~yKsraeqeLne~~eq~selkreLqsLR 642 (1123)
.+++.|-.+..+|..--..+++++.++++++..++
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333433333333223333344444444444444
No 473
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=89.94 E-value=0.34 Score=33.26 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001211 43 LAQIWMHADHNHTSYLGRQEFYNALK 68 (1123)
Q Consensus 43 LaqIW~LAD~d~DG~Ldr~EF~vAM~ 68 (1123)
+..|+..+|.+++|+|++.||..+|.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45677777777777777777777664
No 474
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=89.92 E-value=6 Score=43.44 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERAL-ADRREAETLGKKYEEKYKQVAEIASKLT 660 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~s-elkreLqsLR~kyEee~KqV~~LEsQLa 660 (1123)
++.+...+-++-+.-.+.-.|.---+.|++.+.-+.... |..++.++. ..+.+..-||+++|....+++.|.++|.
T Consensus 64 AETIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~---f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 64 AETITSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVD---FAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555444455555566666666655555 666664443 3467788899999999999999998874
Q ss_pred H
Q 001211 661 I 661 (1123)
Q Consensus 661 v 661 (1123)
.
T Consensus 141 ~ 141 (220)
T KOG3156|consen 141 H 141 (220)
T ss_pred H
Confidence 3
No 475
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.78 E-value=27 Score=37.00 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT--------ERALADRREAETLGKKYEEKYKQVA 653 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~--------eq~selkreLqsLR~kyEee~KqV~ 653 (1123)
+....+++..|++++.+++.++..+-.+...|...-..+-++|.++. +.+.+.=.+...|..++.-...+-.
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 001211 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1123)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kq 710 (1123)
.|..+-..+|..|+.++.-+...+.-+.++. -.-..|.-.+.++...|++++..
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~---vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIG---VVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHh
No 476
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=89.77 E-value=8.2 Score=39.58 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhCccc
Q 001211 697 ADRIQSDLEELLKALTE---RCKKHGIDV 722 (1123)
Q Consensus 697 ~~~in~el~eL~kqL~E---~~k~lgvk~ 722 (1123)
++.+=--+.+|..++.. +.+.+|+.|
T Consensus 86 ldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 86 LDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 33333334444444444 444455544
No 477
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=15 Score=45.11 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 589 VDEREKVILDSREKIEFYRS----KMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDA 664 (1123)
Q Consensus 589 LAnLenQied~~Ek~~~lrs----QmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa 664 (1123)
|.+-+.+..+++|+++.++. ++..|..||.. ...+..-+.....+|.+|.+-+|++...|..++.||.-+..
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeh----assLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEH----ASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444433 33333333332 33333334444556677777777777777777777755433
Q ss_pred H
Q 001211 665 K 665 (1123)
Q Consensus 665 ~ 665 (1123)
.
T Consensus 409 ~ 409 (654)
T KOG4809|consen 409 I 409 (654)
T ss_pred h
Confidence 3
No 478
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=89.71 E-value=11 Score=36.01 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001211 604 EFYRSKMQELVLYKSRC 620 (1123)
Q Consensus 604 ~~lrsQmQELl~yKsra 620 (1123)
..++..+.+|.....+.
T Consensus 18 ~~i~~~v~~l~~l~~~~ 34 (117)
T smart00503 18 QKISQNVAELQKLHEEL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 479
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=89.64 E-value=28 Score=40.54 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 001211 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSD 703 (1123)
Q Consensus 665 ~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~e 703 (1123)
+|++||..|.+=...-.+++ ..|..|-+.+..|-.+
T Consensus 117 tL~diqktla~~~~~n~klr---e~NieL~eKlkeL~eQ 152 (391)
T KOG1850|consen 117 TLKDIQKTLAEGRSKNDKLR---EDNIELSEKLKELGEQ 152 (391)
T ss_pred HHHHHHHHHHhcchhhHHHH---HHHHHHHHHHHHHHHH
Confidence 35555554444444444444 4444444433333333
No 480
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=89.64 E-value=6 Score=43.35 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=64.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-hHHHHHHHHHHHHHHH---HHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA-DRREAETLGKKYEEKY---KQVAEI 655 (1123)
Q Consensus 580 qEatdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~se-lkreLqsLR~kyEee~---KqV~~L 655 (1123)
.+++.|.+.+.+++.+++..++.....+..+...+..++.++.+++++-.++.. -..+|+....-|-+.- ..+.++
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~a 111 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEA 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHH
Confidence 467888899999999999999999999999999999999999999999888665 3555655443332221 133344
Q ss_pred HHHHHHHHHHHHHHHH
Q 001211 656 ASKLTIEDAKFRELQE 671 (1123)
Q Consensus 656 EsQLavlEa~LqdiQ~ 671 (1123)
...|+.+|.....+..
T Consensus 112 k~~l~~aE~~~e~~~~ 127 (207)
T PF05546_consen 112 KEALEEAEEKVEEAFD 127 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555544444433
No 481
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.50 E-value=3.1 Score=50.24 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001211 702 SDLEELLKALTERCK 716 (1123)
Q Consensus 702 ~el~eL~kqL~E~~k 716 (1123)
..|++|+.+|.....
T Consensus 130 ~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 130 GLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHhhccc
Confidence 455666666655433
No 482
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=89.49 E-value=3.6 Score=40.22 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYK 617 (1123)
Q Consensus 585 L~keLAnLenQied~~Ek~~~lrsQmQELl~yK 617 (1123)
+..++..++.++..+..+...+..++.+...-.
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554443
No 483
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=89.46 E-value=18 Score=38.21 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001211 692 LLQVRADRIQSDLEELLKALTE 713 (1123)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E 713 (1123)
.++..+.....++++....|.+
T Consensus 142 ~~~~~~~~~~~~l~~~lekL~~ 163 (204)
T PF04740_consen 142 SFIDSLEKAKKKLQETLEKLRA 163 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 484
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=89.38 E-value=10 Score=43.06 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001211 693 LQVRADRIQSDLEEL 707 (1123)
Q Consensus 693 Lqer~~~in~el~eL 707 (1123)
.++++..++.+|++|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 445555555555555
No 485
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.36 E-value=6.6 Score=50.28 Aligned_cols=21 Identities=5% Similarity=0.207 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001211 662 EDAKFRELQERKMELHQAIVN 682 (1123)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqk 682 (1123)
++..+++++.++.++-.+|.+
T Consensus 570 a~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 570 AQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555443
No 486
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=89.36 E-value=21 Score=37.27 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001211 695 VRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 695 er~~~in~el~eL~kqL~E~~k 716 (1123)
+|...+..-+..+....-+|++
T Consensus 185 ~~~~dlk~~l~~~~~~qi~~~~ 206 (218)
T cd07596 185 ERARDLKAALKEFARLQVQYAE 206 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 487
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.35 E-value=6.8 Score=44.10 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HH-----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001211 634 DRREAETLGKKYEEKYKQVAEIASKLT-------------------IE-----DAKFRELQERKMELHQAIVNMERGGSA 689 (1123)
Q Consensus 634 lkreLqsLR~kyEee~KqV~~LEsQLa-------------------vl-----Ea~LqdiQ~EL~ELeqeLqklq~g~~~ 689 (1123)
+.-....|+.++++..+++++++..|+ .+ |--.+..+.+|.+|+.+|.=-+ ..
T Consensus 175 inl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQK---s~ 251 (330)
T KOG2991|consen 175 INLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQK---SQ 251 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHH---hh
Confidence 344566788899999999999887752 11 2224556677888888887444 55
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 001211 690 DGLLQVRADRIQSDLEELLK 709 (1123)
Q Consensus 690 n~~Lqer~~~in~el~eL~k 709 (1123)
+..||..-+.++.-+.+|-.
T Consensus 252 seElkssq~eL~dfm~eLde 271 (330)
T KOG2991|consen 252 SEELKSSQEELYDFMEELDE 271 (330)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 66676666666655555543
No 488
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=89.34 E-value=27 Score=35.44 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 594 KVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE------RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (1123)
Q Consensus 594 nQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~e------q~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~Lq 667 (1123)
.++..+..+......++++|..|+....+++..... .......=|..|...|.++...|..++.+|......+.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444477888888999998888776655321 11112333555665555555555555555555544444
Q ss_pred HHHHHHHHH
Q 001211 668 ELQERKMEL 676 (1123)
Q Consensus 668 diQ~EL~EL 676 (1123)
.+..+..-|
T Consensus 103 ~a~~~~k~l 111 (147)
T PRK05689 103 EKKQRLEAL 111 (147)
T ss_pred HHHHHHHHH
Confidence 444444333
No 489
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.32 E-value=6.8 Score=45.52 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001211 695 VRADRIQSDLEELLKALTERCKK 717 (1123)
Q Consensus 695 er~~~in~el~eL~kqL~E~~k~ 717 (1123)
+-|..+.+.+++|-+.++...|+
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555554443
No 490
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=89.31 E-value=24 Score=38.68 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001211 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK-------FRELQERKMELHQAIVN 682 (1123)
Q Consensus 610 mQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~-------LqdiQ~EL~ELeqeLqk 682 (1123)
.+++...+.++.+....+.......-.+|...+++|+...++.+.++.++..++.. +..++.++..-.++..+
T Consensus 100 ~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~ 179 (251)
T cd07653 100 ISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEE 179 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666667777888889999999999888888777655433 33344444443333333
Q ss_pred HhhcCCCchhHHHHHHHHHHH
Q 001211 683 MERGGSADGLLQVRADRIQSD 703 (1123)
Q Consensus 683 lq~g~~~n~~Lqer~~~in~e 703 (1123)
.+ ...+..+..+|..
T Consensus 180 a~------~~Y~~~l~~~N~~ 194 (251)
T cd07653 180 AK------NEYAAQLQKFNKE 194 (251)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 32 4445555555554
No 491
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.19 E-value=19 Score=45.93 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=21.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 686 GGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1123)
Q Consensus 686 g~~~n~~Lqer~~~in~el~eL~kqL~E~~k 716 (1123)
...||..|..-+++-.+|+..|..-.+..+.
T Consensus 520 sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 520 SEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3378888888888777777766655544443
No 492
>PF15294 Leu_zip: Leucine zipper
Probab=89.17 E-value=4.8 Score=45.81 Aligned_cols=119 Identities=11% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 001211 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEE---------KYKQVAEIASKLT 660 (1123)
Q Consensus 590 AnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEe---------e~KqV~~LEsQLa 660 (1123)
+-|..+|..+++.-+.++..+.-|+.....+ | .+++++++.|..|+..... ...++..||.+++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~---l----~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSA---L----DEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHH
Confidence 6688889888877788888888888777666 3 3444678888888862221 2236677888877
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 001211 661 IEDA----KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (1123)
Q Consensus 661 vlEa----~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk 721 (1123)
.++. .+.+....+..|+..|+..+ .+--.+|+++.....+| ++.+++-..-.++|
T Consensus 201 ~lK~e~ek~~~d~~~~~k~L~e~L~~~K---helL~~QeqL~~aekeL---ekKfqqT~ay~NMk 259 (278)
T PF15294_consen 201 ALKSELEKALQDKESQQKALEETLQSCK---HELLRVQEQLSLAEKEL---EKKFQQTAAYRNMK 259 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchhhhcchhhH---HHHhCccHHHHHhH
Confidence 6643 35566666666777777666 45445555555555444 34444433333333
No 493
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.02 E-value=7.1 Score=47.79 Aligned_cols=54 Identities=11% Similarity=0.318 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 001211 653 AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1123)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~k 709 (1123)
..|+..|+..+..|.+++.+..++++.|+.++ +....-++.+.+....|-++++
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr---kdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLR---KDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667777777777777777777 5555555556666555555544
No 494
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=88.99 E-value=5.6 Score=37.57 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------------chhHHHHHHHHHHHHHH
Q 001211 646 EEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSA-------------------DGLLQVRADRIQSDLEE 706 (1123)
Q Consensus 646 Eee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~-------------------n~~Lqer~~~in~el~e 706 (1123)
++...++..+..++..++..+..++.++.+++..+..+..-... -..|+++++.+..++..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHh
Q 001211 707 LLKALTERCKKH 718 (1123)
Q Consensus 707 L~kqL~E~~k~l 718 (1123)
|++++.+..+.+
T Consensus 81 l~~~~~~l~~~l 92 (106)
T PF01920_consen 81 LEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 495
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.95 E-value=22 Score=42.72 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHHHHHHHH---HHHH---------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 001211 580 QDSTTAGKKVDEREKVILD---SREK---------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEE 647 (1123)
Q Consensus 580 qEatdL~keLAnLenQied---~~Ek---------~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEe 647 (1123)
+|...|.-.+..|+.|+-+ .+++ .+.|-.+-.+-...+..|+-++..+.++.++++-.+..|+..+++
T Consensus 250 qEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dk 329 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADK 329 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccee
Q 001211 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAV 727 (1123)
Q Consensus 648 e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ 727 (1123)
.......+..+|..+-..|...|.......+.|-..+ ++-..++.-+.+|.++|.-.+..-++..++..-
T Consensus 330 laee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq----------~ekeatqELieelrkelehlr~~kl~~a~p~rg 399 (502)
T KOG0982|consen 330 LAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQ----------EEKEATQELIEELRKELEHLRRRKLVLANPVRG 399 (502)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q ss_pred ee
Q 001211 728 IE 729 (1123)
Q Consensus 728 ie 729 (1123)
+.
T Consensus 400 rs 401 (502)
T KOG0982|consen 400 RS 401 (502)
T ss_pred ch
No 496
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=88.92 E-value=15 Score=37.59 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001211 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSAD 690 (1123)
Q Consensus 611 QELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n 690 (1123)
..+...-.|-++.|+...+.++.....|. +.+++++..++.+-..+.+.|.++...-++|.+++
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~----------~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~------ 90 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALA----------KRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVN------ 90 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecCCCcCC
Q 001211 691 GLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQP 736 (1123)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~~k~lgvk~k~~~~ielp~gw~~ 736 (1123)
.|...|.+++.-|+++...+...=..|-..-||+ ||-|.+
T Consensus 91 -els~~L~~~~~lL~~~v~~ie~LN~~LP~~~RLe-----p~~~~~ 130 (131)
T PF10158_consen 91 -ELSQQLSRCQSLLNQTVPSIETLNEILPEEERLE-----PFVWTT 130 (131)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhCChhhcCC-----CCCCCC
No 497
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=88.91 E-value=32 Score=39.31 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 001211 596 ILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK------LTIEDAKFREL 669 (1123)
Q Consensus 596 ied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQ------LavlEa~Lqdi 669 (1123)
|.++..++..|-.++-+++..=...-+..+..-..+-..+..|+-+|..-+.-..++..|+.+ |.++|..|..+
T Consensus 98 l~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvra 177 (271)
T PF13805_consen 98 LSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRA 177 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q 001211 670 QERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL---TERCKKH 718 (1123)
Q Consensus 670 Q~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~eL~kqL---~E~~k~l 718 (1123)
+.+..-.|++|..++ -..|||=+.--=.-+-|+-+++ .+|+++|
T Consensus 178 Eae~lvaEAqL~n~k-----R~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~L 224 (271)
T PF13805_consen 178 EAENLVAEAQLSNIK-----RQKLKEAYSLKFDALIERAEKQAILAEYGKRL 224 (271)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.88 E-value=3.4 Score=38.23 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001211 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (1123)
Q Consensus 584 dL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkreLqsLR~kyEee~KqV~~LEsQLavlE 663 (1123)
.+.+.|++.+.+| +.|...-+.|-.....+.+-+..++..+.+++..+..|+.+++...+.++.|+..+...|
T Consensus 2 sl~~~l~EKDe~I-------a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 2 SLEKKLAEKDEQI-------AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred hHHHHHHhHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 499
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=88.87 E-value=30 Score=36.64 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHH
Q 001211 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRR--------EAETLGKKYEEKYKQVA 653 (1123)
Q Consensus 582 atdL~keLAnLenQied~~Ek~~~lrsQmQELl~yKsraeqeLne~~eq~selkr--------eLqsLR~kyEee~KqV~ 653 (1123)
.....+.-..|+..+...+...+.....+.+-+.....+.++|+....++..+-. ++..++.=.+.-...+.
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 001211 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (1123)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~ 705 (1123)
.+|.+++-++..|..+..++.....+|..+. ..-....+||++++..++
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~raIarn~---a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATRRAIARND---ARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
No 500
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=88.86 E-value=2.2 Score=44.54 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH----HHHHHHHHH
Q 001211 639 ETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE----ELLKALTER 714 (1123)
Q Consensus 639 qsLR~kyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklq~g~~~n~~Lqer~~~in~el~----eL~kqL~E~ 714 (1123)
+.+.+=..+.-++|.....++..++..+..++.+|.+...+|..++.....|..||.+|..++.+.. +.+.+|.+.
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhCcccccc
Q 001211 715 CKKHGIDVKSH 725 (1123)
Q Consensus 715 ~k~lgvk~k~~ 725 (1123)
..-+=|+..+.
T Consensus 82 ~~~~ai~~al~ 92 (155)
T PF06810_consen 82 KKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHH
Done!