Query 001212
Match_columns 1122
No_of_seqs 521 out of 2372
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 7E-169 1E-173 1486.1 46.6 949 98-1116 8-988 (1125)
2 TIGR01070 mutS1 DNA mismatch r 100.0 2E-132 5E-137 1242.8 72.0 672 327-1115 1-680 (840)
3 COG0249 MutS Mismatch repair A 100.0 5E-132 1E-136 1224.2 60.8 691 324-1115 3-695 (843)
4 PRK05399 DNA mismatch repair p 100.0 2E-130 4E-135 1233.7 72.7 683 324-1115 5-695 (854)
5 KOG0218 Mismatch repair MSH3 [ 100.0 2E-121 4E-126 1040.5 51.1 731 325-1115 160-918 (1070)
6 KOG0219 Mismatch repair ATPase 100.0 7.7E-80 1.7E-84 716.3 45.2 699 326-1116 11-734 (902)
7 KOG0220 Mismatch repair ATPase 100.0 4E-73 8.6E-78 650.1 38.8 594 451-1115 102-709 (867)
8 KOG0221 Mismatch repair ATPase 100.0 8.7E-67 1.9E-71 587.2 29.1 482 601-1116 193-689 (849)
9 PRK00409 recombination and DNA 100.0 3.9E-53 8.5E-58 527.5 39.3 397 672-1115 14-416 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 2.1E-45 4.5E-50 457.0 38.4 389 674-1115 17-411 (771)
11 smart00533 MUTSd DNA-binding d 100.0 1.4E-36 3.1E-41 345.7 32.1 306 669-1006 1-307 (308)
12 PF00488 MutS_V: MutS domain V 100.0 2.6E-37 5.6E-42 336.2 6.3 131 978-1115 1-131 (235)
13 PF01624 MutS_I: MutS domain I 100.0 6.6E-32 1.4E-36 261.1 9.6 107 328-444 1-113 (113)
14 COG1193 Mismatch repair ATPase 100.0 9E-30 2E-34 311.3 29.9 380 675-1115 16-404 (753)
15 cd03286 ABC_MSH6_euk MutS6 hom 100.0 4.5E-31 9.7E-36 283.4 7.6 117 996-1115 2-118 (218)
16 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.4E-29 3.1E-34 272.5 7.5 119 994-1115 1-119 (222)
17 cd03281 ABC_MSH5_euk MutS5 hom 99.9 9.9E-28 2.1E-32 258.0 6.9 116 996-1115 2-117 (213)
18 cd03285 ABC_MSH2_euk MutS2 hom 99.9 5.5E-27 1.2E-31 253.7 7.5 117 996-1115 2-118 (222)
19 cd03282 ABC_MSH4_euk MutS4 hom 99.9 1.8E-26 3.9E-31 246.1 7.2 116 996-1115 2-117 (204)
20 cd03284 ABC_MutS1 MutS1 homolo 99.9 5.4E-26 1.2E-30 245.0 6.3 118 995-1115 1-118 (216)
21 PF05192 MutS_III: MutS domain 99.9 4.3E-23 9.2E-28 220.5 21.3 91 651-742 1-91 (204)
22 cd03280 ABC_MutS2 MutS2 homolo 99.9 4.6E-23 1E-27 220.2 8.0 114 996-1114 2-116 (200)
23 cd03243 ABC_MutS_homologs The 99.9 1.3E-22 2.8E-27 217.2 7.3 114 996-1113 2-115 (202)
24 cd03283 ABC_MutS-like MutS-lik 99.9 2.3E-22 4.9E-27 214.2 6.8 110 996-1114 2-113 (199)
25 smart00534 MUTSac ATPase domai 99.8 1.3E-21 2.9E-26 206.3 4.8 86 1029-1114 1-86 (185)
26 cd03227 ABC_Class2 ABC-type Cl 99.5 2.5E-15 5.4E-20 155.2 4.1 85 996-1105 2-96 (162)
27 PF05188 MutS_II: MutS domain 99.4 6.7E-12 1.5E-16 125.4 14.0 131 453-622 1-131 (137)
28 PF05190 MutS_IV: MutS family 99.3 1.2E-11 2.7E-16 115.0 13.2 92 837-928 1-92 (92)
29 PF09465 LBR_tudor: Lamin-B re 99.2 6E-11 1.3E-15 96.0 6.0 48 105-154 7-54 (55)
30 KOG4675 Uncharacterized conser 97.9 3.7E-06 8E-11 90.5 2.3 61 98-158 153-221 (273)
31 KOG0219 Mismatch repair ATPase 97.6 6.5E-06 1.4E-10 99.4 -3.6 105 997-1105 627-732 (902)
32 smart00333 TUDOR Tudor domain. 97.1 0.00051 1.1E-08 57.9 4.3 45 104-150 3-48 (57)
33 cd04508 TUDOR Tudor domains ar 97.0 0.0011 2.3E-08 53.8 4.4 43 107-150 1-44 (48)
34 smart00743 Agenet Tudor-like d 96.9 0.0014 2.9E-08 56.2 4.8 36 105-141 4-39 (61)
35 COG4133 CcmA ABC-type transpor 96.8 0.0011 2.4E-08 68.7 3.9 32 1014-1048 18-49 (209)
36 COG4619 ABC-type uncharacteriz 96.7 0.0012 2.6E-08 67.0 3.6 38 1013-1051 16-53 (223)
37 PF09038 53-BP1_Tudor: Tumour 96.7 0.0026 5.5E-08 60.9 5.1 44 102-146 1-44 (122)
38 PF13555 AAA_29: P-loop contai 96.4 0.0029 6.3E-08 54.2 3.4 33 1017-1051 15-47 (62)
39 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.0035 7.6E-08 68.8 3.3 22 1027-1048 30-51 (254)
40 COG1120 FepC ABC-type cobalami 96.1 0.0048 1E-07 68.1 3.9 51 1013-1064 15-85 (258)
41 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.0075 1.6E-07 61.8 4.0 32 1014-1048 15-46 (157)
42 PF00005 ABC_tran: ABC transpo 95.8 0.0054 1.2E-07 61.1 2.6 27 1027-1061 11-37 (137)
43 PRK15177 Vi polysaccharide exp 95.7 0.0071 1.5E-07 65.5 3.3 24 1027-1050 13-36 (213)
44 cd03238 ABC_UvrA The excision 95.7 0.0084 1.8E-07 63.0 3.7 21 1027-1047 21-41 (176)
45 COG4559 ABC-type hemin transpo 95.6 0.0087 1.9E-07 63.3 3.3 68 1015-1106 16-85 (259)
46 PRK10247 putative ABC transpor 95.6 0.013 2.8E-07 63.9 4.7 32 1016-1048 23-54 (225)
47 cd03265 ABC_DrrA DrrA is the A 95.6 0.011 2.4E-07 64.2 4.0 32 1016-1048 16-47 (220)
48 TIGR01166 cbiO cobalt transpor 95.5 0.012 2.5E-07 62.5 3.8 22 1027-1048 18-39 (190)
49 COG1119 ModF ABC-type molybden 95.5 0.0085 1.8E-07 64.9 2.7 35 1013-1048 44-78 (257)
50 COG3839 MalK ABC-type sugar tr 95.4 0.011 2.4E-07 67.7 3.6 33 1015-1048 18-50 (338)
51 cd03226 ABC_cobalt_CbiO_domain 95.4 0.01 2.2E-07 63.7 3.2 22 1027-1048 26-47 (205)
52 TIGR02211 LolD_lipo_ex lipopro 95.4 0.011 2.4E-07 64.2 3.4 22 1027-1048 31-52 (221)
53 TIGR02323 CP_lyasePhnK phospho 95.4 0.013 2.9E-07 65.0 4.1 33 1016-1049 19-51 (253)
54 PRK10584 putative ABC transpor 95.4 0.011 2.4E-07 64.6 3.3 23 1027-1049 36-58 (228)
55 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.012 2.6E-07 63.8 3.4 22 1027-1048 30-51 (218)
56 cd03269 ABC_putative_ATPase Th 95.3 0.014 3.1E-07 62.8 3.9 22 1027-1048 26-47 (210)
57 cd03259 ABC_Carb_Solutes_like 95.3 0.012 2.7E-07 63.4 3.5 22 1027-1048 26-47 (213)
58 cd03268 ABC_BcrA_bacitracin_re 95.3 0.015 3.3E-07 62.5 3.9 22 1027-1048 26-47 (208)
59 cd03261 ABC_Org_Solvent_Resist 95.3 0.013 2.7E-07 64.4 3.3 22 1027-1048 26-47 (235)
60 cd03225 ABC_cobalt_CbiO_domain 95.3 0.015 3.3E-07 62.6 3.9 22 1027-1048 27-48 (211)
61 TIGR02770 nickel_nikD nickel i 95.3 0.013 2.8E-07 64.2 3.4 22 1027-1048 12-33 (230)
62 cd03230 ABC_DR_subfamily_A Thi 95.3 0.014 3E-07 61.0 3.4 22 1027-1048 26-47 (173)
63 cd03232 ABC_PDR_domain2 The pl 95.2 0.013 2.8E-07 62.4 3.1 22 1027-1048 33-54 (192)
64 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.016 3.4E-07 58.8 3.5 68 1018-1103 20-87 (144)
65 TIGR00960 3a0501s02 Type II (G 95.2 0.013 2.9E-07 63.3 3.3 23 1027-1049 29-51 (216)
66 cd03267 ABC_NatA_like Similar 95.2 0.014 2.9E-07 64.3 3.3 33 1015-1048 36-68 (236)
67 cd03228 ABCC_MRP_Like The MRP 95.2 0.015 3.3E-07 60.6 3.5 24 1027-1050 28-51 (171)
68 cd03279 ABC_sbcCD SbcCD and ot 95.2 0.014 3E-07 63.2 3.4 33 1017-1049 18-50 (213)
69 cd03257 ABC_NikE_OppD_transpor 95.2 0.013 2.9E-07 63.7 3.3 22 1027-1048 31-52 (228)
70 cd03223 ABCD_peroxisomal_ALDP 95.2 0.015 3.2E-07 60.4 3.3 23 1027-1049 27-49 (166)
71 TIGR03608 L_ocin_972_ABC putat 95.2 0.016 3.5E-07 62.1 3.7 22 1027-1048 24-45 (206)
72 cd03218 ABC_YhbG The ABC trans 95.2 0.017 3.7E-07 63.2 4.0 22 1027-1048 26-47 (232)
73 cd03250 ABCC_MRP_domain1 Domai 95.2 0.015 3.2E-07 62.5 3.3 23 1027-1049 31-53 (204)
74 cd03263 ABC_subfamily_A The AB 95.2 0.017 3.7E-07 62.6 3.9 22 1027-1048 28-49 (220)
75 cd03266 ABC_NatA_sodium_export 95.2 0.015 3.3E-07 63.0 3.4 22 1027-1048 31-52 (218)
76 cd03237 ABC_RNaseL_inhibitor_d 95.1 0.016 3.4E-07 64.3 3.5 22 1027-1048 25-46 (246)
77 cd03293 ABC_NrtD_SsuB_transpor 95.1 0.014 3E-07 63.4 3.1 22 1027-1048 30-51 (220)
78 cd03292 ABC_FtsE_transporter F 95.1 0.015 3.3E-07 62.7 3.3 22 1027-1048 27-48 (214)
79 TIGR01189 ccmA heme ABC export 95.1 0.018 4E-07 61.4 4.0 22 1027-1048 26-47 (198)
80 TIGR03410 urea_trans_UrtE urea 95.1 0.015 3.2E-07 63.6 3.3 22 1027-1048 26-47 (230)
81 TIGR01978 sufC FeS assembly AT 95.1 0.014 3E-07 64.3 3.1 22 1027-1048 26-47 (243)
82 cd03216 ABC_Carb_Monos_I This 95.1 0.016 3.4E-07 60.1 3.2 22 1027-1048 26-47 (163)
83 TIGR02673 FtsE cell division A 95.1 0.016 3.4E-07 62.6 3.4 22 1027-1048 28-49 (214)
84 PRK11629 lolD lipoprotein tran 95.1 0.015 3.3E-07 63.7 3.4 22 1027-1048 35-56 (233)
85 cd03254 ABCC_Glucan_exporter_l 95.1 0.016 3.5E-07 63.2 3.4 22 1027-1048 29-50 (229)
86 KOG0064 Peroxisomal long-chain 95.1 0.52 1.1E-05 56.1 15.6 22 1027-1048 508-529 (728)
87 COG0488 Uup ATPase components 95.1 0.21 4.5E-06 61.3 13.1 49 1028-1077 349-397 (530)
88 cd03235 ABC_Metallic_Cations A 95.1 0.015 3.2E-07 62.8 3.0 22 1027-1048 25-46 (213)
89 cd03264 ABC_drug_resistance_li 95.1 0.016 3.5E-07 62.4 3.3 30 1017-1048 17-46 (211)
90 PRK13539 cytochrome c biogenes 95.1 0.02 4.3E-07 61.6 4.0 33 1015-1048 17-49 (207)
91 PRK10419 nikE nickel transport 95.1 0.018 3.9E-07 64.7 3.7 34 1014-1048 26-59 (268)
92 cd03215 ABC_Carb_Monos_II This 95.0 0.017 3.6E-07 60.9 3.3 22 1027-1048 26-47 (182)
93 PRK10895 lipopolysaccharide AB 95.0 0.019 4.1E-07 63.3 3.8 34 1015-1049 18-51 (241)
94 TIGR01184 ntrCD nitrate transp 95.0 0.017 3.7E-07 63.2 3.5 22 1027-1048 11-32 (230)
95 TIGR02315 ABC_phnC phosphonate 95.0 0.016 3.6E-07 63.8 3.3 23 1027-1049 28-50 (243)
96 cd03262 ABC_HisP_GlnQ_permease 95.0 0.018 3.8E-07 62.2 3.5 22 1027-1048 26-47 (213)
97 cd03298 ABC_ThiQ_thiamine_tran 95.0 0.019 4.2E-07 61.8 3.7 22 1027-1048 24-45 (211)
98 PRK14242 phosphate transporter 95.0 0.02 4.3E-07 63.6 3.9 34 1015-1049 21-54 (253)
99 cd03260 ABC_PstB_phosphate_tra 95.0 0.017 3.7E-07 63.0 3.4 23 1027-1049 26-48 (227)
100 cd03301 ABC_MalK_N The N-termi 95.0 0.018 3.8E-07 62.2 3.4 22 1027-1048 26-47 (213)
101 cd03247 ABCC_cytochrome_bd The 95.0 0.018 3.9E-07 60.4 3.3 23 1027-1049 28-50 (178)
102 cd03224 ABC_TM1139_LivF_branch 95.0 0.017 3.8E-07 62.6 3.3 22 1027-1048 26-47 (222)
103 PRK11248 tauB taurine transpor 95.0 0.017 3.7E-07 64.3 3.3 22 1027-1048 27-48 (255)
104 PF13476 AAA_23: AAA domain; P 95.0 0.022 4.8E-07 60.1 4.1 34 1014-1051 10-43 (202)
105 cd03246 ABCC_Protease_Secretio 95.0 0.019 4.1E-07 60.0 3.4 23 1027-1049 28-50 (173)
106 cd03234 ABCG_White The White s 95.0 0.018 3.8E-07 62.9 3.4 22 1027-1048 33-54 (226)
107 cd03219 ABC_Mj1267_LivG_branch 95.0 0.017 3.7E-07 63.3 3.2 22 1027-1048 26-47 (236)
108 cd03258 ABC_MetN_methionine_tr 95.0 0.018 4E-07 63.0 3.4 22 1027-1048 31-52 (233)
109 cd03296 ABC_CysA_sulfate_impor 94.9 0.018 3.9E-07 63.4 3.3 23 1027-1049 28-50 (239)
110 PRK10744 pstB phosphate transp 94.9 0.019 4E-07 64.2 3.4 23 1027-1049 39-61 (260)
111 PRK10908 cell division protein 94.9 0.019 4.2E-07 62.4 3.4 22 1027-1048 28-49 (222)
112 PRK11831 putative ABC transpor 94.9 0.018 3.9E-07 64.7 3.3 22 1027-1048 33-54 (269)
113 CHL00131 ycf16 sulfate ABC tra 94.9 0.026 5.6E-07 62.6 4.5 34 1015-1049 22-55 (252)
114 COG4555 NatA ABC-type Na+ tran 94.9 0.018 4E-07 60.5 3.0 94 1018-1117 20-129 (245)
115 cd03256 ABC_PhnC_transporter A 94.9 0.019 4.1E-07 63.2 3.3 23 1027-1049 27-49 (241)
116 cd03222 ABC_RNaseL_inhibitor T 94.9 0.019 4.2E-07 60.3 3.2 64 1027-1103 25-88 (177)
117 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.021 4.5E-07 62.8 3.6 23 1027-1049 29-51 (238)
118 PRK13543 cytochrome c biogenes 94.9 0.02 4.2E-07 62.0 3.3 23 1027-1049 37-59 (214)
119 cd03251 ABCC_MsbA MsbA is an e 94.9 0.02 4.3E-07 62.7 3.4 24 1027-1050 28-51 (234)
120 cd03229 ABC_Class3 This class 94.9 0.022 4.8E-07 59.8 3.5 22 1027-1048 26-47 (178)
121 cd03248 ABCC_TAP TAP, the Tran 94.8 0.021 4.5E-07 62.2 3.5 22 1027-1048 40-61 (226)
122 TIGR01277 thiQ thiamine ABC tr 94.8 0.022 4.8E-07 61.5 3.6 24 1027-1050 24-47 (213)
123 PRK10771 thiQ thiamine transpo 94.8 0.022 4.8E-07 62.4 3.7 22 1027-1048 25-46 (232)
124 TIGR03005 ectoine_ehuA ectoine 94.8 0.02 4.4E-07 63.5 3.4 22 1027-1048 26-47 (252)
125 PRK13540 cytochrome c biogenes 94.8 0.021 4.6E-07 61.1 3.3 22 1027-1048 27-48 (200)
126 COG1118 CysA ABC-type sulfate/ 94.8 0.022 4.8E-07 63.5 3.5 68 1018-1087 20-102 (345)
127 cd03214 ABC_Iron-Siderophores_ 94.8 0.022 4.8E-07 59.9 3.4 22 1027-1048 25-46 (180)
128 cd03253 ABCC_ATM1_transporter 94.8 0.021 4.6E-07 62.6 3.3 23 1027-1049 27-49 (236)
129 PRK15112 antimicrobial peptide 94.8 0.021 4.5E-07 64.1 3.4 22 1027-1048 39-60 (267)
130 COG1131 CcmA ABC-type multidru 94.8 0.022 4.7E-07 64.9 3.4 35 1013-1048 18-52 (293)
131 PRK11614 livF leucine/isoleuci 94.8 0.02 4.4E-07 62.9 3.1 22 1027-1048 31-52 (237)
132 cd03245 ABCC_bacteriocin_expor 94.7 0.023 5E-07 61.6 3.5 23 1027-1049 30-52 (220)
133 PRK11247 ssuB aliphatic sulfon 94.7 0.022 4.8E-07 63.6 3.4 22 1027-1048 38-59 (257)
134 cd03252 ABCC_Hemolysin The ABC 94.7 0.023 4.9E-07 62.5 3.4 22 1027-1048 28-49 (237)
135 PRK13638 cbiO cobalt transport 94.7 0.021 4.6E-07 64.2 3.2 22 1027-1048 27-48 (271)
136 cd03213 ABCG_EPDR ABCG transpo 94.7 0.022 4.8E-07 60.7 3.2 23 1027-1049 35-57 (194)
137 cd03272 ABC_SMC3_euk Eukaryoti 94.7 0.021 4.6E-07 62.9 3.1 23 1028-1050 24-46 (243)
138 PRK13538 cytochrome c biogenes 94.7 0.023 5E-07 61.0 3.3 22 1027-1048 27-48 (204)
139 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.027 5.7E-07 61.9 3.9 22 1027-1048 27-48 (236)
140 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.7 0.027 5.8E-07 61.5 3.8 33 1015-1048 37-69 (224)
141 PRK13536 nodulation factor exp 94.7 0.022 4.8E-07 66.2 3.3 34 1014-1048 55-88 (340)
142 PRK14247 phosphate ABC transpo 94.7 0.026 5.7E-07 62.5 3.8 22 1027-1048 29-50 (250)
143 cd03295 ABC_OpuCA_Osmoprotecti 94.7 0.024 5.1E-07 62.6 3.4 22 1027-1048 27-48 (242)
144 TIGR01288 nodI ATP-binding ABC 94.7 0.023 5E-07 65.0 3.4 22 1027-1048 30-51 (303)
145 PRK09493 glnQ glutamine ABC tr 94.7 0.024 5.1E-07 62.5 3.4 22 1027-1048 27-48 (240)
146 cd03294 ABC_Pro_Gly_Bertaine T 94.6 0.028 6.1E-07 63.1 4.0 22 1027-1048 50-71 (269)
147 PRK13541 cytochrome c biogenes 94.6 0.028 6E-07 59.9 3.7 23 1027-1049 26-48 (195)
148 cd03278 ABC_SMC_barmotin Barmo 94.6 0.024 5.3E-07 60.6 3.3 23 1029-1051 24-46 (197)
149 cd03275 ABC_SMC1_euk Eukaryoti 94.6 0.025 5.3E-07 62.8 3.4 25 1028-1052 23-47 (247)
150 TIGR03411 urea_trans_UrtD urea 94.6 0.024 5.3E-07 62.4 3.4 23 1027-1049 28-50 (242)
151 TIGR02324 CP_lyasePhnL phospho 94.6 0.025 5.3E-07 61.6 3.3 23 1027-1049 34-56 (224)
152 TIGR03522 GldA_ABC_ATP gliding 94.6 0.028 6.1E-07 64.2 3.9 33 1015-1048 17-49 (301)
153 PRK14262 phosphate ABC transpo 94.6 0.025 5.5E-07 62.7 3.4 22 1027-1048 29-50 (250)
154 PRK14253 phosphate ABC transpo 94.6 0.029 6.2E-07 62.2 3.9 24 1027-1050 29-52 (249)
155 PRK11264 putative amino-acid A 94.6 0.026 5.7E-07 62.5 3.6 22 1027-1048 29-50 (250)
156 PRK11124 artP arginine transpo 94.6 0.026 5.7E-07 62.2 3.5 22 1027-1048 28-49 (242)
157 TIGR02769 nickel_nikE nickel i 94.6 0.028 6.1E-07 62.9 3.8 34 1014-1048 25-58 (265)
158 PRK14274 phosphate ABC transpo 94.6 0.025 5.5E-07 63.1 3.4 24 1027-1050 38-61 (259)
159 PRK13644 cbiO cobalt transport 94.6 0.025 5.4E-07 63.7 3.3 22 1027-1048 28-49 (274)
160 PRK09544 znuC high-affinity zi 94.6 0.029 6.3E-07 62.4 3.8 22 1027-1048 30-51 (251)
161 TIGR01188 drrA daunorubicin re 94.6 0.03 6.4E-07 64.1 3.9 22 1027-1048 19-40 (302)
162 PRK14250 phosphate ABC transpo 94.6 0.03 6.5E-07 61.8 3.9 22 1027-1048 29-50 (241)
163 PRK11300 livG leucine/isoleuci 94.6 0.03 6.4E-07 62.3 3.9 22 1027-1048 31-52 (255)
164 PRK15056 manganese/iron transp 94.6 0.025 5.4E-07 63.7 3.2 22 1027-1048 33-54 (272)
165 PRK13632 cbiO cobalt transport 94.6 0.025 5.5E-07 63.5 3.3 23 1027-1049 35-57 (271)
166 PRK13649 cbiO cobalt transport 94.5 0.025 5.4E-07 63.9 3.3 22 1027-1048 33-54 (280)
167 PRK13548 hmuV hemin importer A 94.5 0.029 6.4E-07 62.6 3.8 22 1027-1048 28-49 (258)
168 PRK14273 phosphate ABC transpo 94.5 0.027 5.8E-07 62.7 3.4 31 1017-1048 24-54 (254)
169 PRK13648 cbiO cobalt transport 94.5 0.027 5.8E-07 63.3 3.4 22 1027-1048 35-56 (269)
170 cd03290 ABCC_SUR1_N The SUR do 94.5 0.028 6E-07 61.0 3.4 23 1027-1049 27-49 (218)
171 PRK14259 phosphate ABC transpo 94.5 0.027 5.9E-07 63.3 3.4 34 1015-1049 28-61 (269)
172 PRK13645 cbiO cobalt transport 94.5 0.025 5.4E-07 64.2 3.1 22 1027-1048 37-58 (289)
173 cd03244 ABCC_MRP_domain2 Domai 94.5 0.029 6.3E-07 60.8 3.6 23 1027-1049 30-52 (221)
174 PRK14255 phosphate ABC transpo 94.5 0.027 5.9E-07 62.5 3.3 23 1027-1049 31-53 (252)
175 PRK14275 phosphate ABC transpo 94.5 0.027 5.8E-07 63.9 3.3 34 1015-1049 54-87 (286)
176 PRK14241 phosphate transporter 94.5 0.027 5.9E-07 62.8 3.3 23 1027-1049 30-52 (258)
177 cd03217 ABC_FeS_Assembly ABC-t 94.5 0.032 6.9E-07 59.7 3.7 22 1027-1048 26-47 (200)
178 PRK14251 phosphate ABC transpo 94.5 0.029 6.3E-07 62.2 3.4 23 1027-1049 30-52 (251)
179 PRK13537 nodulation ABC transp 94.4 0.027 5.8E-07 64.6 3.2 34 1014-1048 21-54 (306)
180 PRK09580 sufC cysteine desulfu 94.4 0.026 5.5E-07 62.5 3.0 23 1027-1049 27-49 (248)
181 TIGR00972 3a0107s01c2 phosphat 94.4 0.031 6.7E-07 61.9 3.6 22 1027-1048 27-48 (247)
182 PRK14245 phosphate ABC transpo 94.4 0.033 7.1E-07 61.8 3.8 23 1027-1049 29-51 (250)
183 PRK14237 phosphate transporter 94.4 0.029 6.3E-07 62.9 3.4 33 1017-1050 37-69 (267)
184 PRK14248 phosphate ABC transpo 94.4 0.029 6.3E-07 62.9 3.4 35 1015-1050 36-70 (268)
185 PRK14267 phosphate ABC transpo 94.4 0.034 7.3E-07 61.8 3.9 34 1015-1049 19-52 (253)
186 PRK14268 phosphate ABC transpo 94.4 0.029 6.4E-07 62.5 3.4 22 1027-1048 38-59 (258)
187 PRK10619 histidine/lysine/argi 94.4 0.031 6.7E-07 62.3 3.6 33 1015-1048 20-52 (257)
188 PRK14240 phosphate transporter 94.4 0.028 6.2E-07 62.2 3.3 23 1027-1049 29-51 (250)
189 PRK13547 hmuV hemin importer A 94.4 0.028 6.1E-07 63.3 3.2 22 1027-1048 27-48 (272)
190 PRK14239 phosphate transporter 94.4 0.03 6.5E-07 62.1 3.4 22 1027-1048 31-52 (252)
191 PRK14235 phosphate transporter 94.4 0.03 6.5E-07 62.8 3.4 35 1015-1050 34-68 (267)
192 PRK13641 cbiO cobalt transport 94.4 0.029 6.2E-07 63.7 3.2 23 1027-1049 33-55 (287)
193 PRK14264 phosphate ABC transpo 94.4 0.046 1E-06 62.6 4.9 22 1027-1048 71-92 (305)
194 PRK11432 fbpC ferric transport 94.3 0.042 9E-07 64.2 4.6 33 1015-1048 21-53 (351)
195 PRK11701 phnK phosphonate C-P 94.3 0.035 7.6E-07 61.9 3.8 22 1027-1048 32-53 (258)
196 PRK13635 cbiO cobalt transport 94.3 0.03 6.6E-07 63.2 3.3 22 1027-1048 33-54 (279)
197 PRK14256 phosphate ABC transpo 94.3 0.036 7.7E-07 61.6 3.8 23 1027-1049 30-52 (252)
198 PRK14272 phosphate ABC transpo 94.3 0.032 7E-07 61.8 3.4 23 1027-1049 30-52 (252)
199 PRK14261 phosphate ABC transpo 94.3 0.037 8.1E-07 61.4 3.9 34 1015-1049 21-54 (253)
200 PRK14269 phosphate ABC transpo 94.3 0.038 8.3E-07 61.1 4.0 23 1027-1049 28-50 (246)
201 cd03231 ABC_CcmA_heme_exporter 94.3 0.039 8.5E-07 59.1 3.9 32 1016-1048 16-47 (201)
202 PRK14270 phosphate ABC transpo 94.3 0.033 7.2E-07 61.8 3.4 23 1027-1049 30-52 (251)
203 PRK14244 phosphate ABC transpo 94.3 0.033 7.2E-07 61.8 3.4 24 1027-1050 31-54 (251)
204 cd03233 ABC_PDR_domain1 The pl 94.3 0.038 8.2E-07 59.3 3.7 22 1027-1048 33-54 (202)
205 PRK09536 btuD corrinoid ABC tr 94.3 0.03 6.6E-07 66.4 3.2 32 1017-1049 20-51 (402)
206 PRK11000 maltose/maltodextrin 94.2 0.032 6.9E-07 65.7 3.3 31 1017-1048 20-50 (369)
207 TIGR03740 galliderm_ABC gallid 94.2 0.035 7.6E-07 60.4 3.4 22 1027-1048 26-47 (223)
208 PRK13546 teichoic acids export 94.2 0.033 7.1E-07 62.5 3.3 22 1027-1048 50-71 (264)
209 PRK09984 phosphonate/organopho 94.2 0.038 8.2E-07 61.8 3.7 22 1027-1048 30-51 (262)
210 TIGR00968 3a0106s01 sulfate AB 94.2 0.035 7.7E-07 61.0 3.4 22 1027-1048 26-47 (237)
211 PRK14246 phosphate ABC transpo 94.2 0.038 8.1E-07 61.7 3.7 22 1027-1048 36-57 (257)
212 PRK03695 vitamin B12-transport 94.2 0.033 7E-07 61.8 3.1 22 1027-1048 22-43 (248)
213 cd03236 ABC_RNaseL_inhibitor_d 94.2 0.035 7.6E-07 61.9 3.3 22 1027-1048 26-47 (255)
214 TIGR03873 F420-0_ABC_ATP propo 94.2 0.039 8.4E-07 61.4 3.7 22 1027-1048 27-48 (256)
215 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.037 8E-07 59.5 3.4 23 1027-1049 34-56 (207)
216 cd03300 ABC_PotA_N PotA is an 94.1 0.037 8E-07 60.7 3.4 22 1027-1048 26-47 (232)
217 cd03274 ABC_SMC4_euk Eukaryoti 94.1 0.037 7.9E-07 60.0 3.3 23 1028-1050 26-48 (212)
218 PRK10253 iron-enterobactin tra 94.1 0.037 8E-07 62.0 3.5 23 1027-1049 33-55 (265)
219 TIGR02982 heterocyst_DevA ABC 94.1 0.037 8E-07 60.1 3.4 22 1027-1048 31-52 (220)
220 TIGR02322 phosphon_PhnN phosph 94.1 0.036 7.8E-07 58.0 3.1 23 1028-1050 2-24 (179)
221 PRK14265 phosphate ABC transpo 94.1 0.044 9.4E-07 61.8 4.0 33 1015-1048 35-67 (274)
222 PRK13640 cbiO cobalt transport 94.1 0.036 7.9E-07 62.7 3.3 22 1027-1048 33-54 (282)
223 PRK13633 cobalt transporter AT 94.1 0.042 9.1E-07 62.1 3.7 33 1015-1048 25-57 (280)
224 PRK13637 cbiO cobalt transport 94.1 0.036 7.9E-07 62.9 3.2 33 1015-1048 22-54 (287)
225 PRK14271 phosphate ABC transpo 94.0 0.046 1E-06 61.7 4.0 34 1014-1048 35-68 (276)
226 TIGR03258 PhnT 2-aminoethylpho 94.0 0.037 8.1E-07 64.8 3.3 33 1015-1048 20-52 (362)
227 PRK10078 ribose 1,5-bisphospho 94.0 0.038 8.3E-07 58.4 3.1 20 1028-1047 3-22 (186)
228 PRK14266 phosphate ABC transpo 94.0 0.041 8.8E-07 61.0 3.4 23 1027-1049 29-51 (250)
229 PRK13651 cobalt transporter AT 94.0 0.037 8.1E-07 63.4 3.2 22 1027-1048 33-54 (305)
230 cd03297 ABC_ModC_molybdenum_tr 94.0 0.037 8.1E-07 59.8 3.0 29 1018-1048 16-44 (214)
231 PRK13647 cbiO cobalt transport 94.0 0.04 8.6E-07 62.1 3.3 22 1027-1048 31-52 (274)
232 PRK14236 phosphate transporter 94.0 0.06 1.3E-06 60.6 4.8 33 1015-1048 40-72 (272)
233 PRK14252 phosphate ABC transpo 94.0 0.041 8.9E-07 61.6 3.4 22 1027-1048 42-63 (265)
234 TIGR03265 PhnT2 putative 2-ami 93.9 0.04 8.7E-07 64.4 3.4 22 1027-1048 30-51 (353)
235 PRK10418 nikD nickel transport 93.9 0.043 9.4E-07 61.0 3.5 23 1027-1049 29-51 (254)
236 PRK14238 phosphate transporter 93.9 0.042 9E-07 61.8 3.4 24 1027-1050 50-73 (271)
237 PRK13650 cbiO cobalt transport 93.9 0.04 8.7E-07 62.3 3.2 23 1027-1049 33-55 (279)
238 PRK13646 cbiO cobalt transport 93.9 0.04 8.7E-07 62.5 3.2 22 1027-1048 33-54 (286)
239 PRK14258 phosphate ABC transpo 93.9 0.044 9.5E-07 61.3 3.5 22 1027-1048 33-54 (261)
240 PRK13634 cbiO cobalt transport 93.9 0.041 8.9E-07 62.5 3.3 22 1027-1048 33-54 (290)
241 PRK13652 cbiO cobalt transport 93.9 0.042 9.1E-07 62.0 3.3 22 1027-1048 30-51 (277)
242 PRK11153 metN DL-methionine tr 93.9 0.041 8.9E-07 64.1 3.3 22 1027-1048 31-52 (343)
243 PRK11231 fecE iron-dicitrate t 93.8 0.051 1.1E-06 60.5 3.8 22 1027-1048 28-49 (255)
244 PRK10575 iron-hydroxamate tran 93.8 0.048 1E-06 61.1 3.6 22 1027-1048 37-58 (265)
245 PRK11650 ugpC glycerol-3-phosp 93.8 0.043 9.3E-07 64.2 3.3 24 1027-1050 30-53 (356)
246 PRK14254 phosphate ABC transpo 93.8 0.045 9.7E-07 62.1 3.4 33 1015-1048 54-86 (285)
247 cd03240 ABC_Rad50 The catalyti 93.8 0.048 1E-06 58.7 3.3 22 1029-1050 24-45 (204)
248 TIGR03771 anch_rpt_ABC anchore 93.7 0.047 1E-06 59.5 3.2 22 1027-1048 6-27 (223)
249 PRK10070 glycine betaine trans 93.7 0.044 9.6E-07 65.0 3.2 22 1027-1048 54-75 (400)
250 PRK13643 cbiO cobalt transport 93.7 0.046 1E-06 62.0 3.2 22 1027-1048 32-53 (288)
251 PRK13639 cbiO cobalt transport 93.7 0.053 1.1E-06 61.1 3.7 22 1027-1048 28-49 (275)
252 PRK14249 phosphate ABC transpo 93.7 0.053 1.1E-06 60.2 3.6 23 1027-1049 30-52 (251)
253 TIGR02142 modC_ABC molybdenum 93.7 0.054 1.2E-06 63.4 3.8 22 1027-1048 23-44 (354)
254 KOG0062 ATPase component of AB 93.7 0.028 6.1E-07 66.4 1.4 33 1028-1064 107-149 (582)
255 PRK09452 potA putrescine/sperm 93.7 0.046 1E-06 64.3 3.2 22 1027-1048 40-61 (375)
256 PRK14260 phosphate ABC transpo 93.6 0.052 1.1E-06 60.6 3.4 24 1027-1050 33-56 (259)
257 PRK14243 phosphate transporter 93.6 0.051 1.1E-06 60.8 3.3 23 1027-1049 36-58 (264)
258 PRK10851 sulfate/thiosulfate t 93.6 0.05 1.1E-06 63.6 3.2 23 1027-1049 28-50 (353)
259 COG2884 FtsE Predicted ATPase 93.6 0.065 1.4E-06 56.0 3.7 25 1026-1050 27-51 (223)
260 PRK10938 putative molybdenum t 93.5 0.047 1E-06 66.8 3.2 22 1027-1048 29-50 (490)
261 PRK11607 potG putrescine trans 93.5 0.051 1.1E-06 64.1 3.3 35 1015-1050 34-68 (377)
262 PRK09700 D-allose transporter 93.5 0.05 1.1E-06 66.9 3.3 23 1027-1049 289-311 (510)
263 PRK13642 cbiO cobalt transport 93.5 0.055 1.2E-06 61.1 3.3 22 1027-1048 33-54 (277)
264 PRK09825 idnK D-gluconate kina 93.4 0.057 1.2E-06 56.7 3.1 23 1028-1050 4-26 (176)
265 cd03276 ABC_SMC6_euk Eukaryoti 93.4 0.064 1.4E-06 57.5 3.5 23 1028-1050 22-44 (198)
266 COG1122 CbiO ABC-type cobalt t 93.4 0.058 1.3E-06 59.3 3.2 29 1027-1063 30-58 (235)
267 PRK14263 phosphate ABC transpo 93.4 0.07 1.5E-06 59.7 3.9 22 1027-1048 34-55 (261)
268 PRK13549 xylose transporter AT 93.4 0.064 1.4E-06 66.0 3.9 35 1014-1049 19-53 (506)
269 TIGR03269 met_CoM_red_A2 methy 93.4 0.057 1.2E-06 66.6 3.4 24 1027-1050 26-49 (520)
270 cd03299 ABC_ModC_like Archeal 93.4 0.06 1.3E-06 59.2 3.3 23 1027-1049 25-47 (235)
271 PRK13636 cbiO cobalt transport 93.3 0.059 1.3E-06 61.0 3.3 23 1027-1049 32-54 (283)
272 PRK11144 modC molybdate transp 93.3 0.06 1.3E-06 63.0 3.4 22 1027-1048 24-45 (352)
273 cd03291 ABCC_CFTR1 The CFTR su 93.3 0.061 1.3E-06 60.9 3.3 22 1027-1048 63-84 (282)
274 COG0410 LivF ABC-type branched 93.3 0.066 1.4E-06 57.7 3.3 63 1027-1090 29-106 (237)
275 COG3950 Predicted ATP-binding 93.2 0.074 1.6E-06 60.0 3.7 34 1014-1050 14-47 (440)
276 COG0396 sufC Cysteine desulfur 93.2 0.066 1.4E-06 57.6 3.2 32 1015-1047 19-50 (251)
277 PRK10762 D-ribose transporter 93.2 0.059 1.3E-06 66.2 3.3 35 1015-1050 19-53 (501)
278 cd01130 VirB11-like_ATPase Typ 93.2 0.066 1.4E-06 56.7 3.2 21 1028-1048 26-46 (186)
279 TIGR02314 ABC_MetN D-methionin 93.2 0.062 1.3E-06 62.5 3.3 33 1017-1050 22-54 (343)
280 PRK15064 ABC transporter ATP-b 93.1 0.062 1.4E-06 66.4 3.3 22 1027-1048 27-48 (530)
281 PRK11819 putative ABC transpor 93.1 0.062 1.4E-06 66.8 3.3 22 1027-1048 33-54 (556)
282 TIGR03415 ABC_choXWV_ATP choli 93.1 0.064 1.4E-06 63.2 3.2 22 1027-1048 50-71 (382)
283 TIGR02633 xylG D-xylose ABC tr 93.1 0.058 1.3E-06 66.2 2.9 22 1027-1048 286-307 (500)
284 TIGR03263 guanyl_kin guanylate 93.1 0.069 1.5E-06 55.9 3.1 22 1028-1049 2-23 (180)
285 PRK10938 putative molybdenum t 93.1 0.059 1.3E-06 66.0 3.0 22 1027-1048 286-307 (490)
286 PRK15064 ABC transporter ATP-b 93.1 0.064 1.4E-06 66.3 3.3 22 1027-1048 345-366 (530)
287 TIGR01186 proV glycine betaine 93.1 0.076 1.7E-06 62.2 3.7 32 1017-1049 10-41 (363)
288 PF02463 SMC_N: RecF/RecN/SMC 93.1 0.084 1.8E-06 57.2 3.8 23 1028-1050 25-47 (220)
289 TIGR03719 ABC_ABC_ChvD ATP-bin 93.0 0.066 1.4E-06 66.6 3.3 22 1027-1048 31-52 (552)
290 cd03288 ABCC_SUR2 The SUR doma 93.0 0.073 1.6E-06 59.4 3.4 23 1027-1049 47-69 (257)
291 PRK09700 D-allose transporter 93.0 0.063 1.4E-06 66.0 3.2 33 1015-1048 20-52 (510)
292 cd03242 ABC_RecF RecF is a rec 93.0 0.074 1.6E-06 59.8 3.4 31 1018-1052 16-46 (270)
293 COG4604 CeuD ABC-type enteroch 93.0 0.1 2.2E-06 54.9 4.0 72 1013-1106 14-85 (252)
294 PRK13549 xylose transporter AT 93.0 0.065 1.4E-06 65.9 3.2 22 1027-1048 288-309 (506)
295 TIGR00235 udk uridine kinase. 93.0 0.077 1.7E-06 57.1 3.4 24 1026-1049 5-28 (207)
296 PRK10636 putative ABC transpor 93.0 0.78 1.7E-05 58.1 12.8 22 1027-1048 338-359 (638)
297 cd03273 ABC_SMC2_euk Eukaryoti 92.9 0.083 1.8E-06 58.7 3.5 23 1028-1050 26-48 (251)
298 PRK15439 autoinducer 2 ABC tra 92.9 0.068 1.5E-06 65.8 3.1 22 1027-1048 289-310 (510)
299 PRK13631 cbiO cobalt transport 92.8 0.077 1.7E-06 61.2 3.3 33 1015-1048 41-73 (320)
300 PRK10762 D-ribose transporter 92.8 0.1 2.2E-06 64.1 4.5 22 1027-1048 278-299 (501)
301 PRK15134 microcin C ABC transp 92.8 0.073 1.6E-06 65.8 3.3 32 1016-1048 25-56 (529)
302 PRK10636 putative ABC transpor 92.8 0.082 1.8E-06 66.8 3.8 22 1027-1048 27-48 (638)
303 cd03277 ABC_SMC5_euk Eukaryoti 92.8 0.09 2E-06 57.0 3.6 24 1028-1051 24-47 (213)
304 COG1134 TagH ABC-type polysacc 92.8 0.086 1.9E-06 57.3 3.3 51 1014-1074 41-91 (249)
305 COG1126 GlnQ ABC-type polar am 92.7 0.091 2E-06 56.1 3.3 36 1014-1050 16-51 (240)
306 cd03241 ABC_RecN RecN ATPase i 92.7 0.089 1.9E-06 59.4 3.6 24 1028-1051 22-45 (276)
307 PF06003 SMN: Survival motor n 92.7 0.15 3.3E-06 57.0 5.2 49 102-150 67-116 (264)
308 COG3910 Predicted ATPase [Gene 92.7 0.088 1.9E-06 54.8 3.1 25 1027-1051 37-61 (233)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 92.6 0.076 1.6E-06 66.0 3.0 33 1015-1048 337-369 (552)
310 TIGR02633 xylG D-xylose ABC tr 92.6 0.097 2.1E-06 64.2 3.9 33 1015-1048 16-48 (500)
311 TIGR03269 met_CoM_red_A2 methy 92.6 0.085 1.8E-06 65.1 3.4 22 1027-1048 310-331 (520)
312 PRK11147 ABC transporter ATPas 92.5 0.083 1.8E-06 66.8 3.3 22 1027-1048 345-366 (635)
313 cd03239 ABC_SMC_head The struc 92.5 0.099 2.1E-06 55.0 3.3 23 1029-1051 24-46 (178)
314 PRK15439 autoinducer 2 ABC tra 92.5 0.085 1.8E-06 64.9 3.3 33 1015-1048 26-58 (510)
315 cd00820 PEPCK_HprK Phosphoenol 92.5 0.11 2.4E-06 49.8 3.3 22 1027-1048 15-36 (107)
316 cd03289 ABCC_CFTR2 The CFTR su 92.5 0.096 2.1E-06 59.1 3.4 25 1027-1051 30-54 (275)
317 PRK15134 microcin C ABC transp 92.5 0.085 1.9E-06 65.2 3.2 31 1017-1048 303-333 (529)
318 PLN00104 MYST -like histone ac 92.4 0.66 1.4E-05 54.9 10.2 45 106-150 56-109 (450)
319 PRK09270 nucleoside triphospha 92.4 0.1 2.3E-06 57.1 3.5 23 1026-1048 32-54 (229)
320 PRK13545 tagH teichoic acids e 92.4 0.098 2.1E-06 63.5 3.5 33 1015-1048 39-71 (549)
321 PRK11819 putative ABC transpor 92.4 0.092 2E-06 65.3 3.3 22 1027-1048 350-371 (556)
322 PRK11288 araG L-arabinose tran 92.3 0.085 1.9E-06 64.7 3.0 22 1027-1048 279-300 (501)
323 PRK15093 antimicrobial peptide 92.3 0.1 2.2E-06 60.5 3.4 34 1015-1049 22-55 (330)
324 smart00382 AAA ATPases associa 92.2 0.11 2.4E-06 50.4 3.2 26 1028-1053 3-28 (148)
325 PRK10982 galactose/methyl gala 92.2 0.093 2E-06 64.2 3.1 22 1027-1048 24-45 (491)
326 PF13304 AAA_21: AAA domain; P 92.2 0.042 9E-07 59.5 0.0 23 1029-1051 1-23 (303)
327 PRK11288 araG L-arabinose tran 92.1 0.099 2.1E-06 64.2 3.1 22 1027-1048 30-51 (501)
328 PRK11147 ABC transporter ATPas 92.0 0.11 2.4E-06 65.6 3.6 22 1027-1048 29-50 (635)
329 cd02023 UMPK Uridine monophosp 91.9 0.1 2.2E-06 55.6 2.6 23 1029-1051 1-23 (198)
330 PRK15079 oligopeptide ABC tran 91.9 0.12 2.6E-06 59.9 3.4 33 1015-1048 36-68 (331)
331 COG1136 SalX ABC-type antimicr 91.8 0.12 2.6E-06 56.2 3.0 35 1015-1050 20-54 (226)
332 cd02025 PanK Pantothenate kina 91.8 0.12 2.6E-06 56.3 3.0 21 1029-1049 1-21 (220)
333 COG3842 PotA ABC-type spermidi 91.8 0.15 3.2E-06 59.0 3.8 75 1013-1088 18-103 (352)
334 PRK10261 glutathione transport 91.7 0.12 2.5E-06 65.3 3.3 33 1015-1048 31-63 (623)
335 TIGR03185 DNA_S_dndD DNA sulfu 91.7 0.15 3.2E-06 64.7 4.2 25 1027-1051 28-52 (650)
336 PLN03073 ABC transporter F fam 91.7 0.12 2.6E-06 66.0 3.2 22 1027-1048 535-556 (718)
337 PRK10982 galactose/methyl gala 91.7 0.11 2.4E-06 63.5 2.9 22 1027-1048 274-295 (491)
338 TIGR01360 aden_kin_iso1 adenyl 91.6 0.14 3E-06 53.7 3.2 22 1027-1048 3-24 (188)
339 COG4178 ABC-type uncharacteriz 91.6 1.2 2.5E-05 55.0 11.3 30 1016-1048 411-440 (604)
340 PRK14257 phosphate ABC transpo 91.6 0.14 3E-06 59.4 3.4 36 1014-1050 96-131 (329)
341 PF13671 AAA_33: AAA domain; P 91.4 0.16 3.5E-06 50.7 3.3 20 1029-1048 1-20 (143)
342 PF13207 AAA_17: AAA domain; P 91.4 0.17 3.6E-06 49.1 3.3 21 1029-1049 1-21 (121)
343 PRK11022 dppD dipeptide transp 91.4 0.14 3.1E-06 59.1 3.3 31 1017-1048 24-54 (326)
344 COG0411 LivG ABC-type branched 91.4 0.062 1.3E-06 58.3 0.2 67 1013-1088 17-105 (250)
345 PLN03073 ABC transporter F fam 91.2 0.13 2.9E-06 65.5 3.0 23 1027-1049 203-225 (718)
346 PRK10261 glutathione transport 91.1 0.15 3.2E-06 64.3 3.4 32 1016-1048 340-371 (623)
347 PF13173 AAA_14: AAA domain 91.1 0.18 3.8E-06 49.9 3.2 37 1027-1063 2-38 (128)
348 PRK11308 dppF dipeptide transp 91.1 0.16 3.5E-06 58.7 3.4 33 1015-1048 30-62 (327)
349 PRK13409 putative ATPase RIL; 91.1 0.15 3.2E-06 63.8 3.2 22 1027-1048 365-386 (590)
350 PRK00064 recF recombination pr 91.1 0.16 3.5E-06 59.5 3.4 24 1028-1051 24-47 (361)
351 COG2274 SunT ABC-type bacterio 91.1 0.65 1.4E-05 59.0 8.8 41 1014-1063 487-527 (709)
352 PRK10246 exonuclease subunit S 90.9 0.19 4.2E-06 67.0 4.3 26 1027-1052 30-55 (1047)
353 TIGR02524 dot_icm_DotB Dot/Icm 90.9 0.16 3.5E-06 59.4 3.1 21 1027-1047 134-154 (358)
354 TIGR00554 panK_bact pantothena 90.9 0.21 4.5E-06 56.6 3.9 21 1028-1048 63-83 (290)
355 PRK00300 gmk guanylate kinase; 90.9 0.17 3.8E-06 54.1 3.1 24 1027-1050 5-28 (205)
356 cd01131 PilT Pilus retraction 90.8 0.17 3.8E-06 54.1 3.1 19 1029-1047 3-21 (198)
357 COG3638 ABC-type phosphate/pho 90.8 0.21 4.5E-06 54.1 3.5 35 1014-1049 18-52 (258)
358 TIGR00611 recf recF protein. A 90.8 0.18 4E-06 59.2 3.4 24 1028-1051 24-47 (365)
359 COG4161 ArtP ABC-type arginine 90.8 0.26 5.7E-06 50.0 4.0 34 1017-1051 19-52 (242)
360 PRK08118 topology modulation p 90.8 0.17 3.7E-06 52.6 2.8 21 1030-1050 4-24 (167)
361 COG4988 CydD ABC-type transpor 90.8 0.88 1.9E-05 55.3 9.1 99 939-1047 269-367 (559)
362 PRK05480 uridine/cytidine kina 90.6 0.2 4.4E-06 53.9 3.4 25 1026-1050 5-29 (209)
363 PRK07261 topology modulation p 90.6 0.18 3.9E-06 52.7 2.8 19 1030-1048 3-21 (171)
364 PRK14732 coaE dephospho-CoA ki 90.6 0.18 3.9E-06 54.0 2.9 26 1029-1060 1-26 (196)
365 PRK14738 gmk guanylate kinase; 90.6 0.24 5.2E-06 53.4 3.9 23 1026-1048 12-34 (206)
366 TIGR00618 sbcc exonuclease Sbc 90.5 0.18 3.8E-06 67.6 3.2 25 1028-1052 27-51 (1042)
367 COG1125 OpuBA ABC-type proline 90.4 0.22 4.8E-06 54.4 3.3 35 1013-1048 14-48 (309)
368 PRK14079 recF recombination pr 90.4 0.22 4.8E-06 58.2 3.6 30 1028-1061 24-53 (349)
369 PRK13409 putative ATPase RIL; 90.2 0.2 4.3E-06 62.7 3.2 23 1026-1048 98-120 (590)
370 cd02026 PRK Phosphoribulokinas 90.2 0.18 4E-06 56.8 2.6 20 1029-1048 1-20 (273)
371 cd03270 ABC_UvrA_I The excisio 90.2 0.27 5.9E-06 53.7 3.9 19 1027-1045 21-39 (226)
372 cd02019 NK Nucleoside/nucleoti 90.1 0.23 5E-06 43.6 2.6 22 1030-1051 2-23 (69)
373 TIGR03015 pepcterm_ATPase puta 90.1 0.22 4.8E-06 55.5 3.2 21 1028-1048 44-64 (269)
374 COG1116 TauB ABC-type nitrate/ 90.0 0.25 5.4E-06 54.1 3.3 22 1027-1048 29-50 (248)
375 TIGR01842 type_I_sec_PrtD type 90.0 1 2.3E-05 55.9 9.3 33 1014-1047 332-364 (544)
376 PRK05416 glmZ(sRNA)-inactivati 89.8 0.26 5.6E-06 55.9 3.5 28 1027-1060 6-33 (288)
377 PHA02562 46 endonuclease subun 89.8 0.23 5E-06 61.8 3.4 25 1028-1052 28-52 (562)
378 TIGR00954 3a01203 Peroxysomal 89.8 0.23 4.9E-06 63.1 3.3 33 1015-1048 467-499 (659)
379 TIGR01187 potA spermidine/putr 89.7 0.15 3.2E-06 59.0 1.5 17 1032-1048 1-17 (325)
380 PRK09473 oppD oligopeptide tra 89.6 0.25 5.5E-06 57.2 3.2 32 1016-1048 32-63 (330)
381 cd02021 GntK Gluconate kinase 89.6 0.23 5.1E-06 50.2 2.6 22 1029-1050 1-22 (150)
382 PLN03211 ABC transporter G-25; 89.6 0.22 4.9E-06 63.0 3.0 22 1027-1048 94-115 (659)
383 TIGR01313 therm_gnt_kin carboh 89.5 0.21 4.6E-06 51.3 2.3 21 1030-1050 1-21 (163)
384 TIGR02168 SMC_prok_B chromosom 89.5 0.22 4.8E-06 67.5 3.1 24 1028-1051 24-47 (1179)
385 cd03271 ABC_UvrA_II The excisi 89.5 0.43 9.3E-06 53.4 4.8 32 1027-1058 21-52 (261)
386 PRK13695 putative NTPase; Prov 89.5 0.25 5.5E-06 51.5 2.8 19 1030-1048 3-21 (174)
387 PRK05541 adenylylsulfate kinas 89.4 0.32 7E-06 50.7 3.7 25 1026-1050 6-30 (176)
388 PRK06762 hypothetical protein; 89.4 0.29 6.3E-06 50.5 3.2 23 1028-1050 3-25 (166)
389 TIGR00101 ureG urease accessor 89.4 0.29 6.2E-06 52.5 3.2 20 1029-1048 3-22 (199)
390 COG4152 ABC-type uncharacteriz 89.4 0.25 5.4E-06 53.7 2.7 48 1014-1071 16-63 (300)
391 PRK02224 chromosome segregatio 89.3 0.28 6.1E-06 64.6 3.7 24 1028-1051 24-47 (880)
392 PRK06995 flhF flagellar biosyn 89.2 0.23 4.9E-06 60.1 2.5 43 1028-1071 257-303 (484)
393 TIGR00634 recN DNA repair prot 89.1 0.29 6.4E-06 60.9 3.5 24 1028-1051 23-46 (563)
394 COG4586 ABC-type uncharacteriz 89.1 0.3 6.5E-06 53.9 3.1 29 1018-1047 42-70 (325)
395 KOG0060 Long-chain acyl-CoA tr 89.1 0.27 5.9E-06 59.2 3.0 82 1027-1113 461-557 (659)
396 PRK14721 flhF flagellar biosyn 89.1 0.24 5.2E-06 58.9 2.6 45 1028-1072 192-239 (420)
397 TIGR01192 chvA glucan exporter 89.1 1.3 2.8E-05 55.6 9.2 34 1014-1048 349-382 (585)
398 COG4674 Uncharacterized ABC-ty 89.1 0.16 3.6E-06 53.2 1.0 30 1017-1047 22-51 (249)
399 COG4778 PhnL ABC-type phosphon 89.0 0.5 1.1E-05 48.6 4.4 39 1016-1063 27-65 (235)
400 COG1117 PstB ABC-type phosphat 89.0 0.33 7.2E-06 51.8 3.3 33 1017-1050 24-56 (253)
401 cd01120 RecA-like_NTPases RecA 89.0 0.32 6.9E-06 49.1 3.2 23 1029-1051 1-23 (165)
402 cd03112 CobW_like The function 88.9 0.33 7.2E-06 50.0 3.2 20 1029-1048 2-21 (158)
403 PRK10869 recombination and rep 88.5 0.33 7.1E-06 60.2 3.3 24 1028-1051 23-46 (553)
404 cd04155 Arl3 Arl3 subfamily. 88.5 0.31 6.8E-06 50.1 2.7 21 1028-1048 15-35 (173)
405 cd01672 TMPK Thymidine monopho 88.3 0.36 7.7E-06 50.9 3.0 29 1029-1059 2-30 (200)
406 TIGR02788 VirB11 P-type DNA tr 88.2 0.36 7.8E-06 55.4 3.2 20 1028-1047 145-164 (308)
407 KOG0127 Nucleolar protein fibr 88.2 0.34 7.4E-06 57.2 2.9 27 100-126 178-204 (678)
408 cd00071 GMPK Guanosine monopho 88.1 0.34 7.4E-06 48.6 2.6 21 1029-1049 1-21 (137)
409 KOG0927 Predicted transporter 88.1 0.37 8.1E-06 57.6 3.2 28 1028-1063 102-129 (614)
410 TIGR03238 dnd_assoc_3 dnd syst 88.1 0.32 6.9E-06 58.2 2.7 19 1027-1045 32-50 (504)
411 COG0419 SbcC ATPase involved i 88.0 0.38 8.2E-06 63.5 3.7 30 1027-1056 25-54 (908)
412 PRK06761 hypothetical protein; 88.0 0.38 8.2E-06 54.2 3.1 23 1028-1050 4-26 (282)
413 PF03215 Rad17: Rad17 cell cyc 87.8 0.36 7.9E-06 59.1 3.1 30 1026-1060 44-73 (519)
414 TIGR03797 NHPM_micro_ABC2 NHPM 87.8 2.3 4.9E-05 54.5 10.4 42 1013-1063 466-507 (686)
415 PRK10789 putative multidrug tr 87.7 0.41 9E-06 59.8 3.6 34 1014-1048 329-362 (569)
416 TIGR02204 MsbA_rel ABC transpo 87.7 2.1 4.5E-05 53.5 9.8 33 1014-1047 354-386 (576)
417 PF06414 Zeta_toxin: Zeta toxi 87.6 0.44 9.5E-06 51.0 3.2 22 1026-1047 14-35 (199)
418 cd00009 AAA The AAA+ (ATPases 87.6 0.46 1E-05 46.5 3.2 26 1027-1052 19-44 (151)
419 PF00004 AAA: ATPase family as 87.6 0.43 9.3E-06 46.6 2.9 21 1030-1050 1-21 (132)
420 PRK10416 signal recognition pa 87.5 0.52 1.1E-05 54.3 3.9 29 1027-1057 114-142 (318)
421 PF05729 NACHT: NACHT domain 87.5 0.43 9.4E-06 48.5 3.0 24 1028-1051 1-24 (166)
422 COG1101 PhnK ABC-type uncharac 87.5 0.44 9.5E-06 51.0 3.0 34 1014-1048 20-53 (263)
423 PRK10535 macrolide transporter 87.4 0.46 9.9E-06 60.3 3.7 24 1027-1050 34-57 (648)
424 COG1129 MglA ABC-type sugar tr 87.3 0.32 6.9E-06 58.6 2.1 59 1027-1094 34-92 (500)
425 KOG2355 Predicted ABC-type tra 87.2 0.49 1.1E-05 50.0 3.1 19 1029-1047 42-60 (291)
426 COG3845 ABC-type uncharacteriz 87.2 0.51 1.1E-05 56.1 3.7 42 1013-1063 16-58 (501)
427 COG1127 Ttg2A ABC-type transpo 87.1 0.61 1.3E-05 50.7 3.9 35 1012-1047 20-54 (263)
428 COG0488 Uup ATPase components 87.0 0.42 9.2E-06 58.6 3.0 21 1028-1048 30-50 (530)
429 TIGR02203 MsbA_lipidA lipid A 86.8 0.52 1.1E-05 58.9 3.7 34 1014-1048 346-379 (571)
430 TIGR00606 rad50 rad50. This fa 86.8 0.57 1.2E-05 64.2 4.4 24 1028-1051 29-52 (1311)
431 PRK11176 lipid transporter ATP 86.8 0.51 1.1E-05 59.1 3.6 33 1014-1047 357-389 (582)
432 PRK03846 adenylylsulfate kinas 86.7 0.55 1.2E-05 50.2 3.4 26 1026-1051 23-48 (198)
433 cd00227 CPT Chloramphenicol (C 86.6 0.55 1.2E-05 49.0 3.2 24 1027-1050 2-25 (175)
434 PLN03140 ABC transporter G fam 86.6 0.46 9.9E-06 65.3 3.3 23 1027-1049 191-213 (1470)
435 TIGR00630 uvra excinuclease AB 86.6 1 2.3E-05 58.8 6.3 54 992-1058 611-664 (924)
436 PRK05057 aroK shikimate kinase 86.6 0.55 1.2E-05 49.1 3.2 23 1028-1050 5-27 (172)
437 TIGR00956 3a01205 Pleiotropic 86.5 0.44 9.5E-06 65.5 3.1 23 1027-1049 87-109 (1394)
438 TIGR02857 CydD thiol reductant 86.5 0.51 1.1E-05 58.4 3.4 33 1014-1047 336-368 (529)
439 COG4138 BtuD ABC-type cobalami 86.5 0.54 1.2E-05 48.6 2.9 21 1027-1047 25-45 (248)
440 PTZ00202 tuzin; Provisional 86.4 0.53 1.1E-05 55.6 3.2 22 1027-1048 286-307 (550)
441 COG4615 PvdE ABC-type sideroph 86.4 2.5 5.4E-05 49.1 8.3 67 1027-1101 349-437 (546)
442 COG4637 Predicted ATPase [Gene 86.4 0.69 1.5E-05 52.0 3.9 25 1027-1051 22-46 (373)
443 TIGR01420 pilT_fam pilus retra 86.4 0.5 1.1E-05 55.1 3.1 21 1028-1048 123-143 (343)
444 PRK08233 hypothetical protein; 86.3 0.6 1.3E-05 48.6 3.3 22 1028-1049 4-25 (182)
445 TIGR00955 3a01204 The Eye Pigm 86.3 0.5 1.1E-05 59.6 3.2 34 1015-1049 40-73 (617)
446 PF11717 Tudor-knot: RNA bindi 86.2 1.5 3.3E-05 36.7 5.0 43 106-149 3-50 (55)
447 PRK10790 putative multidrug tr 86.1 0.62 1.3E-05 58.5 3.9 40 1015-1063 356-395 (592)
448 TIGR00150 HI0065_YjeE ATPase, 86.1 0.65 1.4E-05 46.4 3.3 23 1028-1050 23-45 (133)
449 cd04129 Rho2 Rho2 subfamily. 86.1 0.79 1.7E-05 48.2 4.2 19 1030-1048 4-22 (187)
450 TIGR00017 cmk cytidylate kinas 86.1 0.56 1.2E-05 51.0 3.0 20 1029-1048 4-23 (217)
451 PRK00889 adenylylsulfate kinas 86.1 0.63 1.4E-05 48.5 3.3 25 1027-1051 4-28 (175)
452 PRK13949 shikimate kinase; Pro 86.0 0.55 1.2E-05 49.0 2.8 20 1030-1049 4-23 (169)
453 PRK04296 thymidine kinase; Pro 85.8 0.8 1.7E-05 48.7 4.0 50 1028-1078 3-54 (190)
454 COG1106 Predicted ATPases [Gen 85.8 0.67 1.5E-05 54.0 3.6 35 1027-1061 22-56 (371)
455 KOG0056 Heavy metal exporter H 85.7 1.3 2.9E-05 52.3 5.9 68 1013-1082 551-642 (790)
456 PRK13657 cyclic beta-1,2-gluca 85.7 0.58 1.3E-05 58.7 3.3 39 1015-1062 350-388 (588)
457 PRK14974 cell division protein 85.6 0.85 1.9E-05 52.9 4.4 30 1027-1058 140-169 (336)
458 PRK01156 chromosome segregatio 85.6 0.57 1.2E-05 61.8 3.4 24 1028-1051 24-47 (895)
459 PF13401 AAA_22: AAA domain; P 85.3 0.69 1.5E-05 45.3 3.0 29 1027-1055 4-32 (131)
460 cd01876 YihA_EngB The YihA (En 85.2 0.62 1.3E-05 47.0 2.7 20 1030-1049 2-21 (170)
461 TIGR01257 rim_protein retinal- 85.2 0.6 1.3E-05 65.6 3.3 34 1014-1048 1953-1986(2272)
462 PRK11174 cysteine/glutathione 85.1 0.83 1.8E-05 57.3 4.4 39 1014-1062 364-402 (588)
463 TIGR01271 CFTR_protein cystic 85.0 0.62 1.3E-05 64.5 3.4 33 1015-1048 441-473 (1490)
464 PRK10522 multidrug transporter 84.9 0.72 1.6E-05 57.3 3.7 41 1014-1063 337-377 (547)
465 KOG3064 RNA-binding nuclear pr 84.9 0.45 9.8E-06 51.2 1.6 8 164-171 167-174 (303)
466 TIGR01194 cyc_pep_trnsptr cycl 84.9 0.66 1.4E-05 57.8 3.3 40 1015-1063 357-396 (555)
467 PRK14722 flhF flagellar biosyn 84.9 0.8 1.7E-05 53.8 3.7 38 1028-1066 138-179 (374)
468 PRK01184 hypothetical protein; 84.9 0.8 1.7E-05 48.1 3.5 26 1029-1060 3-28 (184)
469 cd02020 CMPK Cytidine monophos 84.9 0.64 1.4E-05 46.5 2.6 21 1029-1049 1-21 (147)
470 PLN02796 D-glycerate 3-kinase 84.8 0.76 1.6E-05 53.1 3.4 23 1028-1050 101-123 (347)
471 TIGR02868 CydC thiol reductant 84.6 0.68 1.5E-05 57.2 3.3 40 1015-1063 350-389 (529)
472 COG4167 SapF ABC-type antimicr 84.6 0.92 2E-05 47.2 3.5 48 1014-1073 29-76 (267)
473 TIGR01193 bacteriocin_ABC ABC- 84.5 4 8.7E-05 52.4 10.3 32 1015-1047 489-520 (708)
474 KOG0979 Structural maintenance 84.5 0.7 1.5E-05 58.6 3.1 76 1026-1101 41-136 (1072)
475 PRK11160 cysteine/glutathione 84.5 0.7 1.5E-05 57.8 3.3 34 1014-1048 354-387 (574)
476 PRK03918 chromosome segregatio 84.4 0.75 1.6E-05 60.6 3.6 24 1029-1052 25-48 (880)
477 KOG0927 Predicted transporter 84.3 0.56 1.2E-05 56.2 2.1 85 1015-1104 405-496 (614)
478 smart00763 AAA_PrkA PrkA AAA d 84.3 0.87 1.9E-05 52.9 3.6 24 1026-1049 77-100 (361)
479 PLN02165 adenylate isopentenyl 84.3 0.83 1.8E-05 52.6 3.4 36 1026-1065 42-77 (334)
480 TIGR00750 lao LAO/AO transport 84.2 0.82 1.8E-05 52.3 3.4 33 1026-1060 33-65 (300)
481 TIGR03375 type_I_sec_LssB type 84.2 0.73 1.6E-05 59.0 3.3 41 1014-1063 479-519 (694)
482 TIGR02169 SMC_prok_A chromosom 84.1 0.75 1.6E-05 62.4 3.6 24 1028-1051 24-47 (1164)
483 cd01129 PulE-GspE PulE/GspE Th 84.0 0.78 1.7E-05 51.5 3.0 20 1028-1047 81-100 (264)
484 TIGR01257 rim_protein retinal- 83.9 0.71 1.5E-05 64.9 3.2 33 1015-1048 945-977 (2272)
485 PRK14737 gmk guanylate kinase; 83.6 0.94 2E-05 48.0 3.3 23 1026-1048 3-25 (186)
486 COG4185 Uncharacterized protei 83.6 0.46 9.9E-06 48.4 0.9 19 1027-1045 2-20 (187)
487 cd04159 Arl10_like Arl10-like 83.6 0.78 1.7E-05 45.7 2.6 19 1030-1048 2-20 (159)
488 KOG1970 Checkpoint RAD17-RFC c 83.6 0.79 1.7E-05 55.1 2.9 63 1027-1097 110-174 (634)
489 TIGR02858 spore_III_AA stage I 83.5 0.78 1.7E-05 51.6 2.8 22 1028-1049 112-133 (270)
490 PRK08533 flagellar accessory p 83.5 0.95 2.1E-05 49.7 3.4 24 1027-1050 24-47 (230)
491 TIGR03796 NHPM_micro_ABC1 NHPM 83.5 0.82 1.8E-05 58.7 3.4 33 1014-1047 493-525 (710)
492 PRK04863 mukB cell division pr 83.4 0.75 1.6E-05 62.8 3.0 31 1018-1052 22-52 (1486)
493 COG0194 Gmk Guanylate kinase [ 83.2 0.94 2E-05 47.5 3.0 21 1027-1047 4-24 (191)
494 cd02027 APSK Adenosine 5'-phos 83.2 0.83 1.8E-05 46.5 2.6 28 1029-1058 1-28 (149)
495 PTZ00243 ABC transporter; Prov 83.2 0.93 2E-05 63.0 3.9 34 1014-1048 674-707 (1560)
496 PF04931 DNA_pol_phi: DNA poly 83.1 0.56 1.2E-05 60.8 1.6 7 32-38 433-439 (784)
497 PRK02496 adk adenylate kinase; 83.0 0.89 1.9E-05 47.8 2.8 19 1030-1048 4-22 (184)
498 TIGR00958 3a01208 Conjugate Tr 82.9 0.96 2.1E-05 58.1 3.7 33 1014-1047 495-527 (711)
499 PHA02530 pseT polynucleotide k 82.9 0.95 2.1E-05 51.5 3.3 22 1028-1049 3-24 (300)
500 PRK06547 hypothetical protein; 82.9 1.1 2.4E-05 46.9 3.5 24 1025-1048 13-36 (172)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-169 Score=1486.10 Aligned_cols=949 Identities=41% Similarity=0.655 Sum_probs=775.1
Q ss_pred ccccCCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceEEEEecchhh--hhhccccccccc
Q 001212 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSL--LKRLRRDSFKKV 175 (1122)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~~~~~~~~~~--~~~~~~~~~~~~ 175 (1122)
.-..|++.+| .||.+.|..++....+ |-++...-+..-+|+-+|....... ..+.+. ..+
T Consensus 8 ~~t~~~e~~~-----------~~~~~~v~~~~~~e~k----~l~~~t~k~~~~~e~~~~~~~~~r~~~~~rv~~---~e~ 69 (1125)
T KOG0217|consen 8 HMTFFEETPG-----------KLYRNSVGLKPKEEPK----SLRNGTLKIKNLKEKEEFKSGQPREVVSSRVKE---YEA 69 (1125)
T ss_pred ceeecccCcc-----------hhcccccccCCccchh----hhcCCCcCcCccchhhHhhccCccccccccccc---hhh
Confidence 3445777777 7999999988876665 6555544444444666665311111 111111 111
Q ss_pred ccCChhhhhccc-CccccCCCCCcchhhh-cccCC-CCCCcccc-------cchhhhhhh--------ccccCCccccCC
Q 001212 176 VVEDDEEMENVE-DEISDDRSDSSDDDWN-KNVGK-EDVSEDEE-------VDLVDEQEN--------KVLRGRKRKSSG 237 (1122)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~~~~~e~-------~~~~~e~e~--------~~~~~~~~~~~~ 237 (1122)
+..+.+.-.+.. ...-...+++||+||+ |++.+ +++++++| ++..+|++. +.+++|.+++..
T Consensus 70 ~~~d~~~~~~~~~~~~k~~~~sDsd~d~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~ 149 (1125)
T KOG0217|consen 70 VGDDADIVVESSSEKPKSGLDSDSDEDFGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAES 149 (1125)
T ss_pred cCCCccceeeecccCCccccCCCcccccCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhccc
Confidence 221111111111 2222344667778886 33322 22222111 111111111 234566666644
Q ss_pred ccCCC-----CCCCCCCCCccccccCCccc-cCC-CCCCCCC-CCCCcccccccccccccccccccCC-CCCccCCCCCC
Q 001212 238 VKKSK-----SDGNAVNADFKSPIIKPVKI-FGS-DKLSNGF-DNPVMGDVSERFSAREADKFHFLGP-DRRDAKRRRPG 308 (1122)
Q Consensus 238 ~~k~~-----~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~ 308 (1122)
..|++ +...+...+.......|.+- .+. ++.+.+. ....-++..+|+.++.++++.||.+ ++||+++|||+
T Consensus 150 v~k~~~kk~~~~~~~~~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~ 229 (1125)
T KOG0217|consen 150 VSKGKSKKSPSDSGAVSMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRG 229 (1125)
T ss_pred ccccccCCCCCCccccccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCC
Confidence 22222 22334445555555666662 122 2222222 2223344467778888888777775 57999999999
Q ss_pred CCCCCCCCCCCCchhhcCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecCCCCcCCcCcccHh
Q 001212 309 DVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFS 388 (1122)
Q Consensus 309 dp~ydp~Tl~iP~~~~~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g~~p~~GfPe~sl~ 388 (1122)
||+|||+||||||++|+++||+++|||+||++|||+|||||+|||||||++||.+++++|+|+||++++|||||||++|+
T Consensus 230 dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~ 309 (1125)
T KOG0217|consen 230 DPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFD 309 (1125)
T ss_pred CCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccccCCCCCCCcEEEEEEecCCCCCCC
Q 001212 389 MNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQ 468 (1122)
Q Consensus 389 ~y~~kLv~~GyKVavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yl~aI~e~~~~~~~~ 468 (1122)
.|+.+|+++|||||+|||+|||.++++|++..|+|+|||+||||+|+|+||++|..++. ++.+.|||||.|+..+. .
T Consensus 310 ~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~-~~~akylmai~e~~~~~--~ 386 (1125)
T KOG0217|consen 310 YWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT-SDLAKYLMAIKESEESY--S 386 (1125)
T ss_pred hHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc-cHHHHHHHHHhhcCCCC--C
Confidence 99999999999999999999999999999999999999999999999999999977664 45678999999976542 1
Q ss_pred CCCcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 001212 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (1122)
Q Consensus 469 ~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 548 (1122)
.+...+|+|++|++||+|+++||+||..++.|.|+|++++|+|+|.+.++++..|...++....+..+..++|..+||+.
T Consensus 387 ~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwds 466 (1125)
T KOG0217|consen 387 TGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDS 466 (1125)
T ss_pred cCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcch
Confidence 45688999999999999999999999999999999999999999999999998887777666666667777888899999
Q ss_pred hhHHHHH--HHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhc
Q 001212 549 ETTVLEI--KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626 (1122)
Q Consensus 549 ~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~ 626 (1122)
+++..++ .+||... |...+|.++.. ..++++++++|+|++++||+.+++++.+++
T Consensus 467 ek~~~eii~~dy~~~~--------------------g~e~~~sil~~---p~~~~~la~safg~~~~Ylk~~~id~~lls 523 (1125)
T KOG0217|consen 467 EKTGREIISEDYFESL--------------------GLEDSPSILKS---PNTDKELALSAFGGLFYYLKKLLIDEELLS 523 (1125)
T ss_pred hhHHHHHhhhhhhhcc--------------------cccCchhhccC---CCccchhhHHHHHHHHHHHHHHhhHHHHhh
Confidence 9988754 2444310 12344444332 234578999999999999999999999999
Q ss_pred ccceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHH
Q 001212 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (1122)
Q Consensus 627 ~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~ 706 (1122)
+++|+.|+... ...|+||++||+|||||.|+++|+.+||||.++|+|.||||||||++||++||+|.+.|++||
T Consensus 524 m~n~~ey~~~~------~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~ 597 (1125)
T KOG0217|consen 524 MKNFEEYDSLD------QSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQ 597 (1125)
T ss_pred hhhhhhcchhc------ccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHH
Confidence 99999886433 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001212 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (1122)
Q Consensus 707 daVe~L~~~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~ 786 (1122)
|||+.|.. ++..+..+...|+++||+||+|.|+|..+.. +++++.+|+.+|.+|+.+..++..+.
T Consensus 598 dav~~l~~-~~~~~~~~~e~l~klPDlERlL~Rih~~~~~--------------~~k~i~~f~rvLegfk~~~~~~~~~~ 662 (1125)
T KOG0217|consen 598 DAVDSLGK-APMDRTKVGETLKKLPDLERLLVRIHNGGEK--------------NKKKIADFIRVLEGFKEINKLLGSLI 662 (1125)
T ss_pred HHHHHHhc-CchhHHHHHHHHhhCCcHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 5667779999999999999999999976532 35789999999999999988887766
Q ss_pred HHHhhcC-hhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 787 AILENTE-SRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865 (1122)
Q Consensus 787 ~~l~~~~-s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~ 865 (1122)
..+.... ..++..++ ..+|++..-+..+..+|||..+.++|.|+|..|+|.+||.+...+.+++++|.++|+++++
T Consensus 663 ~v~~~~~~~~~is~~~---~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk 739 (1125)
T KOG0217|consen 663 NVLKEGEGLRLISELL---ESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRK 739 (1125)
T ss_pred HHHHhhHHHHHHHHHh---cCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5543221 22233222 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEecCceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 866 LLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFC 945 (1122)
Q Consensus 866 ~l~~~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~ 945 (1122)
.+++.+|.|+++++..|++|||++....+|.+|+..+++||+.||+||++.++...+.++++++.....++.++++.+|.
T Consensus 740 ~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~ 819 (1125)
T KOG0217|consen 740 RLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFD 819 (1125)
T ss_pred hcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988778888999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCC
Q 001212 946 EHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHG 1025 (1122)
Q Consensus 946 ~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~ 1025 (1122)
+|+..|+++++++|.||||+|||.+|..+++++|||+|++..+ +.+.+.++.+||||+.... ..+.|||||+.+|+..
T Consensus 820 ~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d-t~~~l~~~~~~Hpcfsl~s-~~~~fipN~v~~g~~~ 897 (1125)
T KOG0217|consen 820 EHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD-TPGFLIVKGLRHPCFSLPS-TGTSFIPNDVELGGAE 897 (1125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC-CCceeEEecccCceeecCc-CCCccccchhhccccc
Confidence 9999999999999999999999999999999999999997532 2348999999999998743 3368999999999777
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhcc
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFF 1105 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT 1105 (1122)
.++++|+||||||||||+|||+|++||||||||||||+.|+++++|||||||||+|+|+.|+||||+|+.||+.||++||
T Consensus 898 e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT 977 (1125)
T KOG0217|consen 898 ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHAT 977 (1125)
T ss_pred cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHh
Q 001212 1106 CSLNQLCRYIH 1116 (1122)
Q Consensus 1106 ~sl~~l~~~~~ 1116 (1122)
++++++.|+|.
T Consensus 978 ~~SLvi~DELG 988 (1125)
T KOG0217|consen 978 RHSLVIVDELG 988 (1125)
T ss_pred ccceeeehhhc
Confidence 98777777763
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2.4e-132 Score=1242.83 Aligned_cols=672 Identities=30% Similarity=0.440 Sum_probs=558.6
Q ss_pred CCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcCCe
Q 001212 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGYR 400 (1122)
Q Consensus 327 ~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g------~~p~~GfPe~sl~~y~~kLv~~GyK 400 (1122)
+||||||||+||++|||+|||||||||||||++||+++|++|||++|.+ ++||||||+|+++.|+++||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 6999999999999999999999999999999999999999999999975 3799999999999999999999999
Q ss_pred EEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccccCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEE
Q 001212 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480 (1122)
Q Consensus 401 VavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yl~aI~e~~~~~~~~~~~~~~Gva~vD 480 (1122)
||||||+|||.+. +++|+||||+||||||+++++++..+ ++|||+||.+.. ..||+||+|
T Consensus 81 Vai~eQ~e~~~~~----------kg~v~Rev~ri~TpGT~~~~~~l~~~-~~nyl~ai~~~~---------~~~gla~~D 140 (840)
T TIGR01070 81 VAICEQIEDPKTA----------KGPVEREVVQLITPGTVSDEALLPER-QDNLLAAIAQES---------NGFGLATLD 140 (840)
T ss_pred EEEEEecCCchhc----------CCceeeEEEEEECCCcccccccccCC-CCceEEEEEeCC---------CeEEEEEEE
Confidence 9999999998642 25999999999999999999988653 689999997421 359999999
Q ss_pred cCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHHh
Q 001212 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560 (1122)
Q Consensus 481 ~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 560 (1122)
+|||+|++++|.|+ ..|.+.|.+++|+|||++.+..+ .....+ . .|+...+...+..+|+
T Consensus 141 ~sTG~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~~~~~~---------~-------~f~~~~~~~~l~~~f~ 200 (840)
T TIGR01070 141 LTTGEFKVTELADK---ETLYAELQRLNPAEVLLAEDLSE-MEAIEL---------R-------EFRKDTAVMSLEAQFG 200 (840)
T ss_pred ccccEEEEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-HHHHHh---------H-------hcchhHHHHHHHHhcC
Confidence 99999999999874 36899999999999999876422 221110 0 2233333444444443
Q ss_pred hcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCcc
Q 001212 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGD 640 (1122)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~~ 640 (1122)
... + ...+ + .....+++|+|+++.||+.++... +.++..+..
T Consensus 201 ~~~---l------------~~~~----------~----~~~~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~-------- 242 (840)
T TIGR01070 201 TED---L------------GGLG----------L----RNAPLGLTAAGCLLQYAKRTQRTA-LPHLQPVRL-------- 242 (840)
T ss_pred ccc---h------------hhcC----------C----CCCHHHHHHHHHHHHHHHHhChhh-hhhCCCcEE--------
Confidence 110 0 0000 0 123578999999999999876542 333333332
Q ss_pred CCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhH
Q 001212 641 MAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720 (1122)
Q Consensus 641 ~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~ 720 (1122)
+..+++|.||++|++|||||+|.+ |+.+||||++||+|+|+||+|+||+||++||+|++.|++|||+|++|.. +..++
T Consensus 243 ~~~~~~m~lD~~t~~~LEl~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~-~~~l~ 320 (840)
T TIGR01070 243 YELQDFMQLDAATRRNLELTENLR-GGKQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLR-HFFLR 320 (840)
T ss_pred ECCCCEEEeCHHHHHhccCCccCC-CCCCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh-CHHHH
Confidence 345679999999999999999986 4578999999999999999999999999999999999999999999986 55678
Q ss_pred HHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhh
Q 001212 721 LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800 (1122)
Q Consensus 721 ~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l 800 (1122)
..++..|+++||+||+++|+..+. . ..+++..+..+|..+..+.+. +....++.+..+
T Consensus 321 ~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~l~~l 378 (840)
T TIGR01070 321 EGLRPLLKEVGDLERLAARVALGN-A--------------RPRDLARLRTSLEQLPELRAL-------LEELEGPTLQAL 378 (840)
T ss_pred HHHHHHhccCcCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHHHH
Confidence 899999999999999999996532 1 134566666666554444332 222334445554
Q ss_pred hcCCCCchhHHHHHHHHHhhhchHhh--cCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEec
Q 001212 801 LTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878 (1122)
Q Consensus 801 ~~~~~~~~~l~~~l~~i~~~~d~~~~--~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~~ 878 (1122)
.. .++.+..+.+.++.+|+.... ..+|.+ +++|++++||.+|+.++++++.+.++.+++++.++.+++++....
T Consensus 379 ~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~ 454 (840)
T TIGR01070 379 AA---QIDDFSELLELLEAALIENPPLVVRDGGL-IREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNA 454 (840)
T ss_pred HH---hcccHHHHHHHHHHHHhcCCccccccCCe-eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 42 345677777778888763211 123444 389999999999999999999999988888888888888777667
Q ss_pred CceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001212 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958 (1122)
Q Consensus 879 ~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~i 958 (1122)
..||+|+|+.....++|++|++.+++++..||+||+++++++++.++++++..++.+++.+|...+.++.+.|..+++++
T Consensus 455 ~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 534 (840)
T TIGR01070 455 VFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL 534 (840)
T ss_pred CceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCC
Q 001212 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038 (1122)
Q Consensus 959 a~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMg 1038 (1122)
|+||||+|||.+|..+ +||||+|++ .+.|.|++||||+++.. + ...|||||+.|++ ..+++||||||||
T Consensus 535 a~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~i~i~~~RHP~le~~-~-~~~~VpNdi~l~~--~~~~~iITGPNmg 603 (840)
T TIGR01070 535 AELDVLANLAEVAETL--HYTRPRFGD-----DPQLRIREGRHPVVEQV-L-RTPFVPNDLEMAH--NRRMLLITGPNMG 603 (840)
T ss_pred HHHHHHHHHHHHHHHC--CCcCceecC-----CCcEEEEeeECHHHHhc-c-CCCeEeeeeecCC--CccEEEEECCCCC
Confidence 9999999999999865 799999985 35799999999999863 2 3579999999985 3689999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1039 GKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
|||||||||||++|||||||||||++|+||+||+||||||++|+|..|+||||+||.||+.||++||+++++|+||+
T Consensus 604 GKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~ 680 (840)
T TIGR01070 604 GKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEI 680 (840)
T ss_pred CchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766666664
No 3
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-132 Score=1224.21 Aligned_cols=691 Identities=33% Similarity=0.456 Sum_probs=566.3
Q ss_pred hcCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecCC-CCcCCcCcccHhHHHHHHHHcCCeEE
Q 001212 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE-QPHCGFPERNFSMNVEKLARKGYRVL 402 (1122)
Q Consensus 324 ~~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g~-~p~~GfPe~sl~~y~~kLv~~GyKVa 402 (1122)
++++||||||||+||++|+|++||||||||||+|++||.++|++|+|++|+++ +||||||+|+++.|+++||++|||||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~~pm~gvP~h~~~~yl~~li~~g~kVA 82 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYYLAKLIELGYKVA 82 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCCCcCCCCccccHHHHHHHHHhCCCeEE
Confidence 56899999999999999999999999999999999999999999999999975 59999999999999999999999999
Q ss_pred EEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccccCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEcC
Q 001212 403 VVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVA 482 (1122)
Q Consensus 403 vvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yl~aI~e~~~~~~~~~~~~~~Gva~vD~s 482 (1122)
||||+|+|..+ .++|+|+|+||+||||++|+.++... ++|||+||..... . .||+||+|++
T Consensus 83 iceQ~e~~~~~----------k~~v~R~v~rv~TpGt~~d~~~l~~~-~~n~l~a~~~~~~-------~-~~gla~~dls 143 (843)
T COG0249 83 ICEQLEDPAEA----------KGVVERKVVRVVTPGTLTDEALLSDR-ENNYLAALAIDRD-------G-KVGLAFIDLS 143 (843)
T ss_pred EEEcccChhhh----------cCcceeEEEEEECCCeeecccccccc-ccceEEEEEecCC-------C-EEEEEEEEcc
Confidence 99999999753 24899999999999999999988654 7899999986431 1 7999999999
Q ss_pred CCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHHhhc
Q 001212 483 TSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562 (1122)
Q Consensus 483 tg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 562 (1122)
||+|++.+|. +..|.+.|.+++|+|||++....+......... +.....+ ..+++...+...|..+|...
T Consensus 144 tGef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~~~-----~~~~~~~-~~~f~~~~~~~~l~~~~~~~ 213 (843)
T COG0249 144 TGEFFVSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQKG-----LFVVRLP-ASFFDEDDAEEILSEYFGVR 213 (843)
T ss_pred cCeEEEEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhhhc-----eeeeecc-hhhcCccHHHHHHHHHhCcc
Confidence 9999999998 678999999999999999987665432221111 1111122 24446566666677776532
Q ss_pred ccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCccCC
Q 001212 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMA 642 (1122)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~~~~ 642 (1122)
+. .+++. .....+++|+|+++.|++.++... +.++. .+....
T Consensus 214 ~l---------------~~~~~--------------~~~~~~~~a~~~ll~Y~~~t~~~~-l~~~~--------~~~~~~ 255 (843)
T COG0249 214 DL---------------DGFGL--------------ISTPLALSAAGALLSYLKDTQKTF-LPHIQ--------IIQRYD 255 (843)
T ss_pred cc---------------ccccc--------------ccchHHHHHHHHHHHHHHHhhhcc-ccccc--------cceeec
Confidence 21 11111 113578999999999998776542 22221 222345
Q ss_pred CCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHH
Q 001212 643 KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722 (1122)
Q Consensus 643 ~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~ 722 (1122)
...+|.||.+|++||||++|.++++.+||||++||+|+|+||+|+|++||++||+|.++|+.|||+|++|.. +..++..
T Consensus 256 ~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~-~~~l~~~ 334 (843)
T COG0249 256 LEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKD-NPELREK 334 (843)
T ss_pred cCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 667999999999999999999877889999999999999999999999999999999999999999999986 5568889
Q ss_pred HHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC-hhhHHhhh
Q 001212 723 FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE-SRQLHHIL 801 (1122)
Q Consensus 723 lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~-s~~l~~l~ 801 (1122)
+|..|+++||+||+++|+..+. .+ .+++..+.+.+..+..+...... .. ...+..+.
T Consensus 335 L~~~L~~v~DleRl~~Rl~~~~-~~--------------~rDl~~l~~~l~~~~~i~~~l~~-------~~~~~~l~~~~ 392 (843)
T COG0249 335 LREMLKKVPDLERLLSRLSLGR-AS--------------PRDLLRLRDSLEKIPEIFKLLSS-------LKSESDLLLLL 392 (843)
T ss_pred HHHHHhcCcCHHHHHHHHHcCC-CC--------------hhhHHHHHHHHHHHHHHHHHHhc-------cccchhhhHHh
Confidence 9999999999999999997543 22 23555555666555544433222 11 11122221
Q ss_pred cCCCCchhHHHHHHHHHhhhchHhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCce
Q 001212 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL 881 (1122)
Q Consensus 802 ~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~~~~~ 881 (1122)
.....++.+.++...+..++..+........+++.|++++||+++...++.++.+.++..+.++.++..+++.......|
T Consensus 393 ~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n~v~G 472 (843)
T COG0249 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYNKVYG 472 (843)
T ss_pred hhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccce
Confidence 11112333456666666666532221111134599999999999999999999999998888888888876544445589
Q ss_pred EEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001212 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAEL 961 (1122)
Q Consensus 882 y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~L 961 (1122)
|+|+|+......+|.+|+++++.++..||+|+++++++.++.++++++...+.+++.++++.+..|.+.|+.++.++|+|
T Consensus 473 y~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~l 552 (843)
T COG0249 473 YYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAEL 552 (843)
T ss_pred eEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchH
Q 001212 962 DALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041 (1122)
Q Consensus 962 D~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKS 1041 (1122)
||++|||..|.. .+||||+|++. ..|.|++||||++|.. +.. .||||||.|++ +.+++|||||||||||
T Consensus 553 D~l~slA~~a~~--~~y~rP~~~~~-----~~l~i~~gRHPvvE~~-~~~-~fVpNd~~L~~--~~~i~lITGPNM~GKS 621 (843)
T COG0249 553 DVLSSLAEIAAE--QNYVRPEFVDS-----NDLEIKEGRHPVVEAV-LDN-GFVPNDIDLSG--NRRIILITGPNMGGKS 621 (843)
T ss_pred HHHHHHHHHHhh--CCCCCceecCC-----CCEEEEecCcchhhhh-ccC-CcccCceeeCC--CceEEEEECCCCCccH
Confidence 999999999964 48999999862 2399999999999974 333 39999999986 5799999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1042 T~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
|||||||||+|||||||||||++|+|||||+|||||||+||+..|+|||||||.|||+||++||+++++|+|||
T Consensus 622 TylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEi 695 (843)
T COG0249 622 TYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEI 695 (843)
T ss_pred HHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999998666555554
No 4
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.8e-130 Score=1233.68 Aligned_cols=683 Identities=31% Similarity=0.448 Sum_probs=571.5
Q ss_pred hcCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecCC------CCcCCcCcccHhHHHHHHHHc
Q 001212 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE------QPHCGFPERNFSMNVEKLARK 397 (1122)
Q Consensus 324 ~~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g~------~p~~GfPe~sl~~y~~kLv~~ 397 (1122)
.+++||||||||+||++|||+|||||||||||||++||+++|++|||++|+++ .||||||+|+++.|+++||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 35799999999999999999999999999999999999999999999999753 599999999999999999999
Q ss_pred CCeEEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccccCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEE
Q 001212 398 GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1122)
Q Consensus 398 GyKVavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yl~aI~e~~~~~~~~~~~~~~Gva 477 (1122)
|||||||||+|||..+ .++|+|+||+||||||+++++++.. ..++||+||.+. ...||+|
T Consensus 85 GyKVaI~EQ~e~~~~~----------k~~v~R~v~~i~TpGT~~~~~~l~~-~~~~yl~ai~~~---------~~~~Gia 144 (854)
T PRK05399 85 GYKVAICEQVEDPATA----------KGPVKREVVRIVTPGTVTDEALLDE-KQNNYLAAIAQD---------GGGYGLA 144 (854)
T ss_pred CCEEEEEEecCChhhc----------CCccceEEEEEECCCeeecccccCC-CCCcEEEEEEEC---------CCeEEEE
Confidence 9999999999999642 2599999999999999999998875 468999999874 2469999
Q ss_pred EEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHH
Q 001212 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKN 557 (1122)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 557 (1122)
|+|++||+|++++| .+++|++.|.+++|+|||++.+..+.. +... ..... ..+... |+.+.+.+.|.+
T Consensus 145 ~~D~stg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~----~~~~--~~~~~-~~~~~~-f~~~~~~~~l~~ 212 (854)
T PRK05399 145 YLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDE----LLLL--RRGLR-RRPPWE-FDLDTAEKRLLE 212 (854)
T ss_pred EEECCCCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh----Hhhc--cccce-eccccc-cChHHHHHHHHH
Confidence 99999999999999 357899999999999999987654332 1111 11111 112222 366667777777
Q ss_pred HHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhcccceeecCCCC
Q 001212 558 IYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSG 637 (1122)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~ 637 (1122)
+|...+. . .+ .. ....+++|+|+++.||+.++... +.++..+..
T Consensus 213 ~f~~~~~---------------~-----~~--------~~--~~~~~~~a~~all~Yl~~~~~~~-~~~~~~~~~----- 256 (854)
T PRK05399 213 QFGVASL---------------D-----GF--------GV--DLPLAIRAAGALLQYLKETQKRS-LPHLRSPKR----- 256 (854)
T ss_pred HhCcCCc---------------c-----cc--------CC--CCHHHHHHHHHHHHHHHHhchhh-hhccCCCEE-----
Confidence 7642110 0 00 00 23578999999999999887632 333333333
Q ss_pred CccCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCCh
Q 001212 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQ 717 (1122)
Q Consensus 638 ~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~ 717 (1122)
+...++|.||++|++|||||.|.+ |+.+||||++||||+|+||+|+||+||++||+|+++|++|||+|++|.+ +.
T Consensus 257 ---~~~~~~m~lD~~tl~~Lei~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~-~~ 331 (854)
T PRK05399 257 ---YEESDYLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLE-DP 331 (854)
T ss_pred ---ECCCCEEEcCHHHHHhccCCccCC-CCCCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh-CH
Confidence 345679999999999999999874 5667899999999999999999999999999999999999999999996 66
Q ss_pred hhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhH
Q 001212 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797 (1122)
Q Consensus 718 ~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l 797 (1122)
.++..++..|+++||++|+++|+..+. . ..+++..+..+|..+..+.. .+....++.+
T Consensus 332 ~~~~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~~~~~~~l 389 (854)
T PRK05399 332 LLREDLRELLKGVYDLERLLSRIALGR-A--------------NPRDLAALRDSLEALPELKE-------LLAELDSPLL 389 (854)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHH
Confidence 788899999999999999999996532 1 12345555555554444332 2333334555
Q ss_pred HhhhcCCCCchhHHHHHHHHHhhhchHhh--cCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Q 001212 798 HHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875 (1122)
Q Consensus 798 ~~l~~~~~~~~~l~~~l~~i~~~~d~~~~--~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~ 875 (1122)
..+.. .++.+.++++.|..+||.+.. ..++.+ +++|++++||++++.++++++.+.++++++++.++.+++++.
T Consensus 390 ~~l~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 465 (854)
T PRK05399 390 AELAE---QLDPLEELADLLERAIVEEPPLLIRDGGV-IADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVG 465 (854)
T ss_pred HHHHh---hcccHHHHHHHHHHHHccCCchhcccCCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 55543 245677778888888875321 123444 489999999999999999999999999988888998888887
Q ss_pred EecCceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001212 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955 (1122)
Q Consensus 876 ~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~ 955 (1122)
+.+..||+|+||......+|++|+..+++++..||+||+++++++++.++++++...+.+++++|+..+.++...|..++
T Consensus 466 ~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~ 545 (854)
T PRK05399 466 YNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLA 545 (854)
T ss_pred EcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEec
Q 001212 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035 (1122)
Q Consensus 956 ~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGP 1035 (1122)
+++|+||||+|||.+|..+ +||||+|++ .+.|.|++||||++|.. +..+.|||||+.|+. ..+++|||||
T Consensus 546 ~~la~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~l~i~~~rHP~le~~-~~~~~~vpnd~~l~~--~~~~~iiTGp 615 (854)
T PRK05399 546 KALAELDVLASLAEVAEEN--NYVRPEFTD-----DPGIDIEEGRHPVVEQV-LGGEPFVPNDCDLDE--ERRLLLITGP 615 (854)
T ss_pred HHHHHHHHHHHHHHHHHHC--CccccEEeC-----CCCEEEEeccCcEEecc-cCCCceEecceeeCC--CCcEEEEECC
Confidence 9999999999999999864 799999985 35699999999999863 234689999999984 4689999999
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1036 NMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
||||||||||||||++|||||||||||++|+|++||+||||||++|+|..|+||||+||.|++.||++||+++++|+||+
T Consensus 616 N~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~ 695 (854)
T PRK05399 616 NMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEI 695 (854)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777777765
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-121 Score=1040.50 Aligned_cols=731 Identities=28% Similarity=0.414 Sum_probs=567.8
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhccee-eecCCCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 001212 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1122)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~-~~~g~~p~~GfPe~sl~~y~~kLv~~GyKVav 403 (1122)
+++||++|||.++|++|+|+||..+||+.|.+|++||+|++++|||. ++.+++..|.||.+++..|++|||++||||||
T Consensus 160 s~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVaV 239 (1070)
T KOG0218|consen 160 SKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVAV 239 (1070)
T ss_pred cccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEEE
Confidence 47899999999999999999999999999999999999999999997 57788999999999999999999999999999
Q ss_pred EecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccc--cCCC----CCCCcEEEEEEecCCCCCCCCCCcEEEEE
Q 001212 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE--LLSA----NPDASYLMALTESNQSPASQSTDRCFGIC 477 (1122)
Q Consensus 404 vEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~--~l~~----~~~~~yl~aI~e~~~~~~~~~~~~~~Gva 477 (1122)
|+|+||++.+. .+.++..++.|.|++|||+||+.++. .+.. +..++|++||.++........+...||+.
T Consensus 240 VkQtETAAiKs----~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vgli 315 (1070)
T KOG0218|consen 240 VKQTETAAIKS----HGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLI 315 (1070)
T ss_pred EeehhhHHHHh----cCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEE
Confidence 99999987632 23467889999999999999998664 2211 12478999998855433334556889999
Q ss_pred EEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhh-cCCCccccccCCccccChhh------
Q 001212 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRH-TRNPLVNDLVPLSEFWDAET------ 550 (1122)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~-~~~~~~~~~~~~~~f~~~~~------ 550 (1122)
-|.++||++.+.+|.|+..++.|++.+..++|.|+|++.. +++.+...+.+. .+.+.+ ....| +-+.
T Consensus 316 gVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~-ls~qt~all~~~~Vsve~~----~~rv~-r~~naV~q~i 389 (1070)
T KOG0218|consen 316 GVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTD-LSPQTVALLFKDNVSVELI----HKRVY-RLENAVVQAI 389 (1070)
T ss_pred EEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCC-CcHHHHHHHHhcccchhhh----hhhhh-hchhHHHHHH
Confidence 9999999999999999999999999999999999999854 678887766542 221111 11111 1111
Q ss_pred --HHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhccc
Q 001212 551 --TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1122)
Q Consensus 551 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~ 628 (1122)
..+.+.++|..... .++....|+ +++.. +.-.+|.++.++.||.++.++. ++..+
T Consensus 390 kla~e~~q~f~~~k~~--------------l~gs~ii~l------i~nl~--~psvic~la~~is~lkefnlE~-~l~~p 446 (1070)
T KOG0218|consen 390 KLANEKIQNFEDDKEM--------------LEGSEIICL------IMNLS--HPSVICLLAKLISHLKEFNLEQ-VLLIP 446 (1070)
T ss_pred HHHHHHHhhhhhhhhh--------------hhhhhhhhh------hhcCC--CchHHHHHHHHHHHHHHhchHH-heecc
Confidence 11112222221110 011111111 22211 1234556999999999987765 44444
Q ss_pred ceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHH
Q 001212 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDA 708 (1122)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~da 708 (1122)
+|.. .+....+|.|+++||++||||.|..+|+.+|||||+||||.|.||.|+||.|+.+||+|...|++|+||
T Consensus 447 sf~s-------~~ss~e~Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDA 519 (1070)
T KOG0218|consen 447 SFYS-------PFSSKEHMTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDA 519 (1070)
T ss_pred cccC-------cccccceeeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5532 234556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc--CChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH-
Q 001212 709 VAGLRG--VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL- 785 (1122)
Q Consensus 709 Ve~L~~--~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l- 785 (1122)
|+++.. .|...+..+++.|.++|||.|-|+||+.+... .+ ..+++ -++.|..+...++.+.......
T Consensus 520 VeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCt-p~--~eff~-------vlk~iy~a~s~fq~~~~~~~~~~ 589 (1070)
T KOG0218|consen 520 VEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCT-PR--KEFFF-------VLKQIYSAVSHFQMHQSYLEHFK 589 (1070)
T ss_pred HHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCC-cH--HHHHH-------HHHHHHHHHHHHHHHhhhhhhhc
Confidence 999832 24446788999999999999999999876432 11 12221 1233333333222211111000
Q ss_pred -HHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCC--eeeCCCCChhHHHHHHH---HHH---HHHHH
Q 001212 786 -GAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGR--IIPHGGVDMDYDSACKK---VKE---IEASL 856 (1122)
Q Consensus 786 -~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~--ii~~~G~d~elD~~~~~---~~~---i~~~L 856 (1122)
...-...+|++|+.++... .-|.+.+.+.+|-.+++..++.+... ....-.-.|.++..++. +++ ....|
T Consensus 590 ~s~~~s~~qS~LLrrlisel-~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~ 668 (1070)
T KOG0218|consen 590 SSDGRSGKQSPLLRRLISEL-NEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQL 668 (1070)
T ss_pred cccccchhccHHHHHHHHHh-cCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 0011234577887776432 12556666777777777544432111 11011113445544332 222 23357
Q ss_pred HHHHHHHHHHhcCCCceEEEecCceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHH
Q 001212 857 TKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSI 936 (1122)
Q Consensus 857 ~~~l~~~~~~l~~~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~i 936 (1122)
.++|++.|+.|..+++.|..+++..|+|||+.+..+++|.+|+..++++...||+||+++++..+|..+++.+.......
T Consensus 669 ~~hLaeiRk~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~ 748 (1070)
T KOG0218|consen 669 KEHLAEIRKYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQ 748 (1070)
T ss_pred HHHHHHHHHHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 77999999999999999999999999999999888999999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceec
Q 001212 937 LQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVP 1016 (1122)
Q Consensus 937 l~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVP 1016 (1122)
+..++.+|.+|+..|+.++..+|.+||++|||.+|. +.+||||+|++. ...|.|++||||++|. +..+.|||
T Consensus 749 ~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~--n~nYvRPtfvd~----~~eI~ikngRhPvIe~--Ll~d~fVP 820 (1070)
T KOG0218|consen 749 YKSFLNKISEHYTELRKATLNLATLDCILSLAATSC--NVNYVRPTFVDG----QQEIIIKNGRHPVIES--LLVDYFVP 820 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccCcccccc----hhhhhhhcCCCchHHH--HhhhccCC
Confidence 999999999999999999999999999999999998 458999999973 3568999999999996 23456999
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~E 1096 (1122)
||+.|.. ++.+++|||||||||||.|+|||||++|||||||||||++|+|+|||.|||||||+|||..|.||||+||.+
T Consensus 821 Ndi~ls~-egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emld 899 (1070)
T KOG0218|consen 821 NDIMLSP-EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLD 899 (1070)
T ss_pred CcceecC-CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHH
Confidence 9999986 467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccHHHHHHHH
Q 001212 1097 TALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1097 ta~IL~~AT~sl~~l~~~~ 1115 (1122)
|+.||++||..+++|+||+
T Consensus 900 t~eil~kat~~SlvilDEl 918 (1070)
T KOG0218|consen 900 TLEILKKATKRSLVILDEL 918 (1070)
T ss_pred HHHHHHhcccchhhhhHhh
Confidence 9999999998766666665
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-80 Score=716.29 Aligned_cols=699 Identities=26% Similarity=0.347 Sum_probs=514.3
Q ss_pred CCCHHHHHHHHHHhhCC---CeEEEEeeCceEEEehhhHHHhhhhc-----ceeeecC----CCCcCCcCcccHhHHHHH
Q 001212 326 NLSEGQKQWWEFKSKHM---DKVIFFKMGKFYELFEMDAHVGAKEL-----DLQYMKG----EQPHCGFPERNFSMNVEK 393 (1122)
Q Consensus 326 ~~TP~~~Qyw~iK~~~~---D~vlffk~GkFYElf~~DA~i~ak~L-----~L~~~~g----~~p~~GfPe~sl~~y~~k 393 (1122)
+-+.+.+-|..+=+.-| ++|.||..|+||..||+||..+|+.. -++++.. +.-.|.+--..|...++-
T Consensus 11 ~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~ 90 (902)
T KOG0219|consen 11 KDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRE 90 (902)
T ss_pred ccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHH
Confidence 44556677766655544 79999999999999999999998854 2343321 223345555567788865
Q ss_pred H-HHcCCeEEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccc-cCCCCCC-Cc--EEEEEEecCCCCCCC
Q 001212 394 L-ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE-LLSANPD-AS--YLMALTESNQSPASQ 468 (1122)
Q Consensus 394 L-v~~GyKVavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~-~l~~~~~-~~--yl~aI~e~~~~~~~~ 468 (1122)
| +..+|+|.+++--|+ +++++.==+||.+.+.+ ++..+.+ +. -++.+.-. ..
T Consensus 91 ~l~~~~~~Ve~y~~~~~------------------~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~-----~~ 147 (902)
T KOG0219|consen 91 LLLVLRYRVEVYSSNQG------------------DWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHP-----GV 147 (902)
T ss_pred HHHHhccceEEeecCcc------------------ceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEee-----cc
Confidence 4 589999999975322 13333334999887654 2322211 11 11112111 12
Q ss_pred CCCcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 001212 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (1122)
Q Consensus 469 ~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 548 (1122)
.+...+|+|++|++.-.+++++|.||..+++|+..|.+++|+|+|++.+....+..++..-..+..+........+|-+
T Consensus 148 ~~~~~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~- 226 (902)
T KOG0219|consen 148 DGQRRVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIIDRCGVLITLRKKSESSW- 226 (902)
T ss_pred CCCceeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhccCeEEEEecccchhH-
Confidence 3467899999999999999999999999999999999999999999943333333332222234444444443344421
Q ss_pred hhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhccc
Q 001212 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1122)
Q Consensus 549 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~ 628 (1122)
...+..+...+.... ....+|+ + ...++++++.+++.||.- .-+.. ..+
T Consensus 227 kdv~~~l~~~l~~~~-------------------~~~~~~e----~-----~~q~a~~~~~~~i~yl~~-~~e~~--~s~ 275 (902)
T KOG0219|consen 227 KDVEQDLNRLLKSQE-------------------HAAYLPE----L-----ELQLAMSALSALIKYLDL-ENEYS--NSG 275 (902)
T ss_pred HHHHHHHHhcccchh-------------------hhccchH----H-----HhHHHHHHHHHHHHHHhh-ccccc--ccc
Confidence 112222222221000 0012232 2 236899999999999942 22221 223
Q ss_pred ceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCC-CCCcccHHh-HhhhcCChHHHHHHHHhhhccCCCHHHHHHHH
Q 001212 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS-GDSSGTLYA-QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (1122)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~-g~~~gSL~~-~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~ 706 (1122)
++++. ......+|.||.+|+++|++|+...+ -....+|.. +||||.|++|-|||++|+.+||+|+..|++|+
T Consensus 276 ~~ei~------~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~ 349 (902)
T KOG0219|consen 276 KYELT------NHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERH 349 (902)
T ss_pred eEEEe------ecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHh
Confidence 44443 23456799999999999999986532 223457887 89999999999999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHH-HhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001212 707 DAVAGLRGVNQPFALEFR-KALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL 785 (1122)
Q Consensus 707 daVe~L~~~~~~~~~~lr-~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l 785 (1122)
|.|+.|+. +...++.++ +.|..+||+-|+..++. .+ + ..++..++.....+..+.+.+.++
T Consensus 350 d~v~~l~~-~~~~rq~L~~~lL~~~pdi~rl~~~l~-~~----~------------L~d~~r~yq~~~~l~~~~~~l~~~ 411 (902)
T KOG0219|consen 350 DLVEALVE-DAEIRQKLRDDLLRRIPDISRLARRLM-KA----N------------LQDVNRIYQAAKLLPTVVQVLISL 411 (902)
T ss_pred hhHHHHHh-hhHHHHHHHHHHhhcChhHHHhhhhhh-hc----c------------hHHHHHHHHHHHHhHHHHHHHHhh
Confidence 99999986 556666655 57899999999999985 11 1 011222222222222222222221
Q ss_pred HHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 786 GAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865 (1122)
Q Consensus 786 ~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~ 865 (1122)
.... ..+|..-+ ......+.++...+...+|++++.+ +.++++..+|++|-++++.+++++..+.+..++...
T Consensus 412 ---~~~~-~~ll~~~l--~~~~~~~~kf~~~ve~t~D~da~ee-~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~ 484 (902)
T KOG0219|consen 412 ---SESH-NRLLKSPL--TEHLKKLEKFQEMVETTVDLDAEEE-NEYRVRVDFDEELQELREKLDELERKMEKLHKKVSA 484 (902)
T ss_pred ---hhhh-hhhhhhhh--hhhhhhHHHHHHHHHHHhhHhHHhc-CcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 11111100 1112345667777888999877765 888889999999999999999999999999888777
Q ss_pred HhcCC---CceEEEecCceEEEEecccccCCC--CCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 866 LLGDT---SITYVTIGKDLYLLEVPESLRGSV--PRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRL 940 (1122)
Q Consensus 866 ~l~~~---~i~y~~~~~~~y~ieV~~~~~~~v--p~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l 940 (1122)
.++.. +++.-.....||++.+.....+.+ .++|+..++.||.++|+|..|..+++++.+.+.++...+..+.+++
T Consensus 485 dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrev 564 (902)
T KOG0219|consen 485 DLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREI 564 (902)
T ss_pred hcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77643 466666677899998876443333 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceecccee
Q 001212 941 IGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDIT 1020 (1122)
Q Consensus 941 ~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~ 1020 (1122)
+.....|.+.|..+.+.+|.|||+.|||++|.....+|+||.+.+.+ ...+.++++||||+|.+ ..-.|||||+.
T Consensus 565 ikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g---s~rl~l~~~rHp~lE~Q--d~~~fIpNdv~ 639 (902)
T KOG0219|consen 565 IKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG---SKRLELKQSRHPVLEGQ--DEIPFIPNDVV 639 (902)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc---hhHHHHHhcccchhhcc--ccCCCCCCccc
Confidence 99999999999999999999999999999998778899999999864 34789999999999974 33479999999
Q ss_pred eCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHH
Q 001212 1021 IGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALM 1100 (1122)
Q Consensus 1021 L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~I 1100 (1122)
|.. +..+++|||||||||||||+||+|.+++||||||||||++|.|+++|.||||+||+|++++|.||||+||.|||.|
T Consensus 640 le~-~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~I 718 (902)
T KOG0219|consen 640 LEK-GKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASI 718 (902)
T ss_pred ccc-CCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHH
Confidence 974 3579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccHHHHHHHHh
Q 001212 1101 LVRFFCSLNQLCRYIH 1116 (1122)
Q Consensus 1101 L~~AT~sl~~l~~~~~ 1116 (1122)
|+.||.++++++||+.
T Consensus 719 lr~at~~SliiiDELG 734 (902)
T KOG0219|consen 719 LRRATKNSLIIIDELG 734 (902)
T ss_pred HHhcCCCcEEEEeccC
Confidence 9999998888877764
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4e-73 Score=650.10 Aligned_cols=594 Identities=21% Similarity=0.274 Sum_probs=451.1
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhh
Q 001212 451 DASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRH 530 (1122)
Q Consensus 451 ~~~yl~aI~e~~~~~~~~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~ 530 (1122)
....++||.|.++. ....||+|.+|+.++++++++|.|+..|.++.+.|.-+.|-||+++....-....+++...
T Consensus 102 ~~~v~~~v~e~r~~-----~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~ 176 (867)
T KOG0220|consen 102 SPSVIVAVVEGRGL-----ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTL 176 (867)
T ss_pred CCceEEEEEecCCc-----ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHH
Confidence 34588999998754 4678999999999999999999999999999999999999999999877655555444321
Q ss_pred cC--CCccccccCCccccChhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHH
Q 001212 531 TR--NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSAL 608 (1122)
Q Consensus 531 ~~--~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Al 608 (1122)
.. .+-++-.--...++..+.+++.+..++..-.. -++.+++ ++.++++|+
T Consensus 177 ~~e~~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s------------------------~vle~i~----~k~~al~a~ 228 (867)
T KOG0220|consen 177 ITENFKNVNFTTISRKYFNSTKGLEYIEQLCIAEFS------------------------TVLEEIQ----SKTYALGAA 228 (867)
T ss_pred HhhcccccceeehhhhhcCchhhHHHHHHHHhhhhH------------------------HHHHHHH----HHHHHHHHH
Confidence 10 01010000112344566677777665543111 1233443 368999999
Q ss_pred HHHHHHHHHhccchhhhcccceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHH
Q 001212 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLL 688 (1122)
Q Consensus 609 gall~YL~~~~l~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlL 688 (1122)
|+++.|++..+.. +.+..+ ..+......++|.||..+.++|||+.|.. -....+|++++|+|.|++|.|.|
T Consensus 229 a~llky~~~~~~~--~~~~~s------lri~~~gs~nT~~id~~~~~~lelV~~~~-~kn~~~l~~vl~~T~t~~g~r~l 299 (867)
T KOG0220|consen 229 AALLKYVEEIQSS--VYAPKS------LRICFQGSENTAMIDSSSAQSLELVINNQ-YKNNHTLFGVLNYTKTPGGYRRL 299 (867)
T ss_pred HHHHHHHHHHHHh--hhccce------eEEEeecccceeeeecccccceEEechhh-hhcccceeeeeeeeecccchhhH
Confidence 9999999976542 222111 12334556789999999999999999874 34456999999999999999999
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHH
Q 001212 689 RTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEF 768 (1122)
Q Consensus 689 r~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 768 (1122)
|..+++||+|...|+.|++++++|.. +.++...+|..|++++|++++++++....... .+.. .+.....+..+
T Consensus 300 Rssilqpl~d~~ti~~rleaiqeL~a-~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~-----~i~~-~~s~I~~~~~L 372 (867)
T KOG0220|consen 300 RSSILQPLTDIETINMRLEAIQELLA-DEELFFGLRSVIKRFLDLDQLLSVLVQIPTQD-----TVNA-AESKINNLIYL 372 (867)
T ss_pred HhhhcccccchhhhhHHHHHHHHHhc-CchHhhhhHHHHhhhhhHHHHHHHHHhhhhHH-----hhhc-chhHHHHHHHH
Confidence 99999999999999999999999997 67788999999999999999999986533110 0000 00000111222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchH--------hhcCCCCeeeCCCCCh
Q 001212 769 ISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV--------EANNSGRIIPHGGVDM 840 (1122)
Q Consensus 769 ~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~--------~~~~~g~ii~~~G~d~ 840 (1122)
..+|.. +..+...+.+..+.++....... ..+.+..+.+.+.+.||-+ ...++..+.++.+++.
T Consensus 373 k~tL~l-------v~~~~~al~~~~s~~~~e~~~~~-~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 373 KHTLEL-------VDPLKIALKNCNSNLLREYYGSF-KDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHHH-------HHHHHHHHhhchhHHHHHHHHHh-cchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 222221 11222222222223333222111 1233344444455555421 1124455667899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCceEEEEeccc----ccCCCCCcEEEeeeecceEEEecchHH
Q 001212 841 DYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES----LRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1122)
Q Consensus 841 elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~~~~~y~ieV~~~----~~~~vp~~~~~~ss~k~~~rf~t~el~ 916 (1122)
.||-+|+.+.++..+..+...+..+.. ..++.+......||++.++.. ....+|..|+.++..+++++|+|..+.
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~-~~nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~fi~~~~~~~~~~~~s~~~i 523 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF-SLNLRLSFSSARGFFIRITTDCIALPSDTLPSEFIKISKVKNSYSFTSADLI 523 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccccccccccEEEEeeccccccccccCchhhhhhhhhcceeeechHHHH
Confidence 999999999999888877766666665 444555444567888888765 246789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEE
Q 001212 917 KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISA 996 (1122)
Q Consensus 917 ~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i 996 (1122)
+++.++.+.-.++......++..+++++.+|.+.+..+.++++.||+|+|||++.... .||||+|++ .+.|
T Consensus 524 k~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~--~y~~P~fT~-------slaI 594 (867)
T KOG0220|consen 524 KMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLS--DYVRPEFTD-------SLAI 594 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc--cccccccCC-------ceee
Confidence 9999999999999999999999999999999999999999999999999999998754 799999975 3999
Q ss_pred eecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeec
Q 001212 997 KSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVR 1076 (1122)
Q Consensus 997 ~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTR 1076 (1122)
++||||+||.. ..+.+|.||+.+.. ..++.|||||||+|||||||||||++|||||||||||.+|.+++|+|||||
T Consensus 595 ~qGRHPILe~i--~~ek~i~N~t~~t~--~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtR 670 (867)
T KOG0220|consen 595 KQGRHPILEKI--SAEKPIANNTYVTE--GSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTR 670 (867)
T ss_pred ccCCCchhhhh--cccCcccCcceeec--ccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHH
Confidence 99999999974 45679999999985 468999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1077 MGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1077 iGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
||..|++..+.||||.||.|+|+||++|+.++|+++|||
T Consensus 671 mg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDEL 709 (867)
T KOG0220|consen 671 MGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDEL 709 (867)
T ss_pred hcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhh
Confidence 999999999999999999999999999998766666655
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-67 Score=587.19 Aligned_cols=482 Identities=24% Similarity=0.344 Sum_probs=392.4
Q ss_pred chHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCCCC-------CcccHH
Q 001212 601 GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD-------SSGTLY 673 (1122)
Q Consensus 601 ~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~-------~~gSL~ 673 (1122)
...+..|+|+++.+|.+..+...+..+ +|+ -|+.+++.+...+.|.||.+|+..|+||+..+.-+ ..-|||
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~-~v~-~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf 270 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDY-NVS-VPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLF 270 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccc-ccc-ccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHH
Confidence 356789999999999988766543322 221 24456667777889999999999999999875411 123999
Q ss_pred hHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHc-CChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCc
Q 001212 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRG-VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752 (1122)
Q Consensus 674 ~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~-~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~ 752 (1122)
+++|+|.+..|+|+||.|+.+|++|..+|..||++|++|+. .|....+.|.+.|+++||+--++.|+.++...
T Consensus 271 ~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~------ 344 (849)
T KOG0221|consen 271 GLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHTK------ 344 (849)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCce------
Confidence 99999999999999999999999999999999999999864 46777888999999999999999999755322
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCCe
Q 001212 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1122)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~i 832 (1122)
+. .++.+.+++...-.+.++|.++..-. .+.+ ... ...+.++.+++..+...+|+..+..++++
T Consensus 345 -l~--------~W~~~~stv~~~~~i~~~~rslp~s~-----~~~~-~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~ 408 (849)
T KOG0221|consen 345 -LS--------DWQVLYSTVYSALGIRDACRSLPQSI-----QLFR-DIA-QEFSDDLHEIASLIGKVIDFEGSLAENRF 408 (849)
T ss_pred -ec--------hHHHHHHHHHHHHHHHHHHHhCccch-----hhhh-HHH-HHHHHHHHHHHHHhhheeccccccccceE
Confidence 22 23344444444444555555433111 1111 100 01124566677778889999999999999
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEEEecCceEEEEecccccCCCCC----cEEEeeeecc
Q 001212 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD--TSITYVTIGKDLYLLEVPESLRGSVPR----DYELRSSKKG 906 (1122)
Q Consensus 833 i~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~--~~i~y~~~~~~~y~ieV~~~~~~~vp~----~~~~~ss~k~ 906 (1122)
.+.+|+|+++|+.|..|..+...|.+..++....|.. +++..++++..||++.||....--..+ .|.++.....
T Consensus 409 Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E 488 (849)
T KOG0221|consen 409 TVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEE 488 (849)
T ss_pred EecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccc
Confidence 9999999999999999999999999998877766654 577778888899999999754322222 3777777777
Q ss_pred eEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCC
Q 001212 907 FFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1122)
Q Consensus 907 ~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1122)
..+|++....+|.+.+.+...++...+..|+-.|-.++......+.++...+++||+|+|||.+|..+ +|.||.+++
T Consensus 489 ~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~--gy~~P~lv~- 565 (849)
T KOG0221|consen 489 KLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADY--GYSRPRLVP- 565 (849)
T ss_pred eeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccc-
Confidence 88999999999999999999999988999999999999999999999999999999999999999865 799999996
Q ss_pred CCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccc
Q 001212 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE 1066 (1122)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~ 1066 (1122)
+.-.+.|.+||||++|. ..++||||++.++++ +.|+.||||||.+|||.||+||||||+||||||||||+.|+
T Consensus 566 ---e~~il~I~ngrh~l~e~---~~dtfvPNst~iggd-kgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~ 638 (849)
T KOG0221|consen 566 ---EVLILRIQNGRHPLMEL---CADTFVPNSTEIGGD-KGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAE 638 (849)
T ss_pred ---HHHHHHHHcCChhHHHH---HHHhcCCCceeecCC-CceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhh
Confidence 23447899999999986 246899999999974 68999999999999999999999999999999999999999
Q ss_pred cCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHH-HHHHh
Q 001212 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQL-CRYIH 1116 (1122)
Q Consensus 1067 l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l-~~~~~ 1116 (1122)
||++|||||||+..|.+..|+||||.++.++|..|++||.++++| ++|.+
T Consensus 639 IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGK 689 (849)
T KOG0221|consen 639 IGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGK 689 (849)
T ss_pred cchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccC
Confidence 999999999999999999999999999999999999999755544 44444
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=3.9e-53 Score=527.49 Aligned_cols=397 Identities=20% Similarity=0.288 Sum_probs=324.4
Q ss_pred HHhHh-hhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCC
Q 001212 672 LYAQL-NHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRN 750 (1122)
Q Consensus 672 L~~~L-n~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~ 750 (1122)
+...| ++|.|++|+|+|++ ++|+.|++.|+.||+.|+++.. .+.......|++++|+++++.|+..+...
T Consensus 14 i~~~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~---~~~~~~~~~l~~~~Di~~~l~r~~~g~~l---- 84 (782)
T PRK00409 14 IKEQLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK---LLRLKGLPPFEGVKDIDDALKRAEKGGVL---- 84 (782)
T ss_pred HHHHHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCccHHHHHHHHhCCCCC----
Confidence 44445 89999999999999 6999999999999999998862 12233445789999999999999643211
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCC
Q 001212 751 SNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSG 830 (1122)
Q Consensus 751 ~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g 830 (1122)
...+|.++...|..+..+...+.... .....+.|..++. .++.+..+.+.|..+|| .+|
T Consensus 85 ----------~~~eL~~i~~~l~~~~~l~~~l~~~~---~~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g 143 (782)
T PRK00409 85 ----------SGDELLEIAKTLRYFRQLKRFIEDLE---EEEELPILEEWVA---KIRTLPELEQEIHNCID-----EEG 143 (782)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHH---cCcCcHHHHHHHHHHhC-----CCC
Confidence 13466677777766655544332110 0012244555543 34566677778888887 345
Q ss_pred CeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEEEecCceEEEEecccccCCCCCcEEEeeeecce
Q 001212 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDT---SITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1122)
Q Consensus 831 ~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~---~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~ 907 (1122)
.+ ++|++++|+.+|+.+++++.++.+.+++..+..+.. +-.+++..+++|+|+|+....+.+|+.|+ .++.+|.
T Consensus 144 ~i--~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~-~~s~sg~ 220 (782)
T PRK00409 144 EV--KDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVH-DQSSSGA 220 (782)
T ss_pred EE--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCcee-eEECCCC
Confidence 44 899999999999999999999998888765543311 12466778899999999998888887664 4566888
Q ss_pred EEEecch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCC
Q 001212 908 FRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1122)
Q Consensus 908 ~rf~t~e-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1122)
.+|++|. +.++++++.+++.++.+++..|+.+|...+.++...|..+.+++++|||++|+|.+|..+ +||+|.|++
T Consensus 221 t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~- 297 (782)
T PRK00409 221 TLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKAL--KATFPLFND- 297 (782)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCccceEcC-
Confidence 9999998 999999999999999999999999999999999999999999999999999999999865 699999974
Q ss_pred CCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCc-c
Q 001212 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-F 1065 (1122)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-a 1065 (1122)
...|.|+++|||+++. ..|||||+.|+. +.+++|||||||||||||||++|++++|||+||||||++ |
T Consensus 298 ----~~~i~l~~~rHPll~~-----~~~Vpndi~l~~--~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~ 366 (782)
T PRK00409 298 ----EGKIDLRQARHPLLDG-----EKVVPKDISLGF--DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPS 366 (782)
T ss_pred ----CCcEEEcCcCCceecc-----CceECceeEECC--CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 3569999999999964 469999999985 358999999999999999999999999999999999986 8
Q ss_pred ccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1066 ~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
++++||+||++||+.|+|..+.|||+.||.+++.|++.+|...++|+||+
T Consensus 367 ~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~ 416 (782)
T PRK00409 367 EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDEL 416 (782)
T ss_pred cccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCC
Confidence 99999999999999999999999999999999999999997655555554
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=2.1e-45 Score=457.05 Aligned_cols=389 Identities=21% Similarity=0.253 Sum_probs=315.4
Q ss_pred hHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCcc
Q 001212 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1122)
Q Consensus 674 ~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~ 753 (1122)
.+.++|.|++|++++++ +.|+.+++.|+.||+.++++... . . .-.|.+++|+++++.|+..+...+
T Consensus 17 ~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~-~---~--~~~l~~~~di~~~l~r~~~g~~l~------ 82 (771)
T TIGR01069 17 NLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSI-E---N--NVRFFGFEDIRELLKRAELGGIVK------ 82 (771)
T ss_pred HHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHh-h---c--cCCcCCCccHHHHHHHHhcCCcCC------
Confidence 34489999999999999 89999999999999999998742 1 1 346889999999999996432111
Q ss_pred chhhHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCCe
Q 001212 754 VVLYEDAAKKQ-LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1122)
Q Consensus 754 ~~~~~~~~~~~-l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~i 832 (1122)
... |..+..+|.....+...... ....+.|..+.. .++.+..+++.|..+|| .+|.+
T Consensus 83 --------~~e~l~~i~~~l~~~~~l~~~l~~------~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i 140 (771)
T TIGR01069 83 --------GLEYILVIQNALKTVKHLKVLSEH------VLDLEILFHLRL---NLITLPPLENDIIACID-----DDGKV 140 (771)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHhc------cccchHHHHHHh---cCCCcHHHHHHHHHHhC-----CCCEE
Confidence 112 55555555544444332211 011234444442 23456667778888887 35655
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEEEecCceEEEEecccccCCCCCcEEEeeeecceEE
Q 001212 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD---TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFR 909 (1122)
Q Consensus 833 i~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~---~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~r 909 (1122)
+++++++|+.+|++++.++.++.+.+++..+..+. .+-.++++.+++|+|+|+..+++++|+.++. .+.+|.++
T Consensus 141 --~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~-~S~sg~t~ 217 (771)
T TIGR01069 141 --KDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHD-TSSSGETF 217 (771)
T ss_pred --CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEE-EeCCCCEE
Confidence 79999999999999999999998888775432211 1123677788899999999988889876654 55688899
Q ss_pred Eecch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCC
Q 001212 910 YWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCS 988 (1122)
Q Consensus 910 f~t~e-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~ 988 (1122)
|++|. +.++++++.+++.++..++..|+.+|...+.++.+.|..+.+++++|||++|+|.+|..+ .+|+|.+.+
T Consensus 218 ~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~--- 292 (771)
T TIGR01069 218 YIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAV--KGEFPMPSF--- 292 (771)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCeeceecC---
Confidence 99998 999999999999999999999999999999999999999999999999999999999865 689999875
Q ss_pred CCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCc-ccc
Q 001212 989 NEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEI 1067 (1122)
Q Consensus 989 ~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-a~l 1067 (1122)
...|.++++|||+++. ..|||||+.|+.+ .++++||||||||||||||++|++++|||+||||||.. +.+
T Consensus 293 --~~~i~l~~~rhPll~~-----~~~vp~di~l~~~--~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~ 363 (771)
T TIGR01069 293 --TGKIILENARHPLLKE-----PKVVPFTLNLKFE--KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEI 363 (771)
T ss_pred --CCCEEEccccCceecC-----CceEeceeEeCCC--ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccc
Confidence 2379999999999864 3599999999853 47899999999999999999999999999999999975 799
Q ss_pred CCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1068 SPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1068 ~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
++||+||++||..|++..+.|||+.||.+++.||+.++...++|+||+
T Consensus 364 ~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~ 411 (771)
T TIGR01069 364 PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDEL 411 (771)
T ss_pred cchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 999999999999999999999999999999999999997655555543
No 11
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.4e-36 Score=345.68 Aligned_cols=306 Identities=33% Similarity=0.439 Sum_probs=240.0
Q ss_pred cccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHHHhcCCCCcHHHHHHHHhccccccC
Q 001212 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG 748 (1122)
Q Consensus 669 ~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~ 748 (1122)
.||||++||+|+|++|+|+||+||++|++|.++|++||++|++|.. +..+...++..|+++||++|++.++..+. .
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~-~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~-- 76 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVE-NPELRQKLRQLLKRIPDLERLLSRIERGR-A-- 76 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHccCCcHHHHHHHHHcCC-C--
Confidence 3799999999999999999999999999999999999999999996 66677889999999999999999996421 0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhch-Hhhc
Q 001212 749 RNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDW-VEAN 827 (1122)
Q Consensus 749 ~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~-~~~~ 827 (1122)
...++..+..++..+..+.+.+.... .......+..+. . .+...+..+...++. ....
T Consensus 77 ------------~~~el~~l~~~l~~~~~l~~~l~~~~---~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~~~~~~ 135 (308)
T smart00533 77 ------------SPRDLLRLYDSLEGLKEIRQLLESLD---GPLLGLLLKVIL---E---PLLELLELLLELLNDDDPLE 135 (308)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHhhc---c---chHHHHHHHHHHhccCCccc
Confidence 12345555555555544443322110 000001111111 0 111222222222211 1111
Q ss_pred CCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCceEEEEecccccCCCCCcEEEeeeecce
Q 001212 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1122)
Q Consensus 828 ~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~ 907 (1122)
.+....+++|++++||.+++.+++++.++++++++..+.++.+.+++..+...+|+|+||.....++|+.|+..+++++.
T Consensus 136 ~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~s~s~~~ 215 (308)
T smart00533 136 VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNT 215 (308)
T ss_pred ccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchhhccCChHHHHHhhhccc
Confidence 11112359999999999999999999999999999888777766776666678899999998888999999999999999
Q ss_pred EEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCC
Q 001212 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSC 987 (1122)
Q Consensus 908 ~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~ 987 (1122)
.+|.++++.++++++.++++++..++..+++++...+.++.+.|..+++++|+|||++|+|.+|..+ +||||+|++
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~--~~~~P~i~~-- 291 (308)
T smart00533 216 ERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEG--NYVRPEFVD-- 291 (308)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcCCeeCC--
Confidence 9999999999999999999999999999999999999999999999999999999999999999855 799999985
Q ss_pred CCCCCeEEEeecCCCceec
Q 001212 988 SNEEPYISAKSLGHPVLRS 1006 (1122)
Q Consensus 988 ~~~~~~l~i~~~RHP~le~ 1006 (1122)
.+.|.|++||||+++.
T Consensus 292 ---~~~l~i~~~rHPlle~ 307 (308)
T smart00533 292 ---SGELEIKNGRHPVLEL 307 (308)
T ss_pred ---CCCEEEeeCCCCcccC
Confidence 3579999999999974
No 12
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=2.6e-37 Score=336.18 Aligned_cols=131 Identities=43% Similarity=0.647 Sum_probs=104.5
Q ss_pred ccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcC
Q 001212 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1122)
Q Consensus 978 ~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1122)
||||+|++ +..|.|++||||+++.. +....|||||+.++.. ..+++||||||||||||||||||+++||||+|
T Consensus 1 y~~P~~~~-----~~~l~i~~~~HPll~~~-~~~~~~v~ndi~~~~~-~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G 73 (235)
T PF00488_consen 1 YCRPKISE-----EKSLKIKEGRHPLLEEK-LENKKFVPNDIELSNN-KSRIIIITGPNMSGKSTFLKQIGLIVILAQIG 73 (235)
T ss_dssp EB-EEEES-----TTEEEEEEE--TTHHHH-TTTSSC--EEEEESSS-SSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CcccEEcC-----CCCEEEEeccCCEEecc-ccCCceecceeecCCC-ceeEEEEeCCCccchhhHHHHHHHHhhhhhcC
Confidence 89999996 34899999999999973 3456899999999853 34799999999999999999999999999999
Q ss_pred CcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1058 ~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
|||||++|++++||+||||||+.|++..|.|||+.||.+++.||+++|+++++|+||+
T Consensus 74 ~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~ 131 (235)
T PF00488_consen 74 CFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDEL 131 (235)
T ss_dssp --BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEEST
T ss_pred ceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccc
Confidence 9999999999999999999999999999999999999999999999997655555544
No 13
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.97 E-value=6.6e-32 Score=261.12 Aligned_cols=107 Identities=37% Similarity=0.683 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeec----CC--CCcCCcCcccHhHHHHHHHHcCCeE
Q 001212 328 SEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK----GE--QPHCGFPERNFSMNVEKLARKGYRV 401 (1122)
Q Consensus 328 TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~----g~--~p~~GfPe~sl~~y~~kLv~~GyKV 401 (1122)
|||++|||+||++|||+|+|||+|+|||+|++||+.+++.|+++++. ++ .||||||.++++.|+++|+++||||
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999874 22 6999999999999999999999999
Q ss_pred EEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccc
Q 001212 402 LVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444 (1122)
Q Consensus 402 avvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~ 444 (1122)
+||||+|++... +++++|+|++|+||||++|++
T Consensus 81 ~i~~q~~~~~~~----------~~~~~R~v~~i~TpGt~~~~~ 113 (113)
T PF01624_consen 81 AIYEQVETPSET----------KGLIEREVTRIYTPGTLIDDE 113 (113)
T ss_dssp EEEEE-S-HHHH----------SSS--EEEEEEEBTTS-TST-
T ss_pred EEEEecCCcccc----------CCCccEEEEEEECcCeecCcC
Confidence 999999998752 258999999999999999864
No 14
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.97 E-value=9e-30 Score=311.27 Aligned_cols=380 Identities=22% Similarity=0.300 Sum_probs=297.3
Q ss_pred HhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHH--HhcCCCCcHHHHHHHHhccccccCCCCc
Q 001212 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFR--KALSRLPDMERLLARLFASSEANGRNSN 752 (1122)
Q Consensus 675 ~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr--~~Lk~lpDleRll~ri~~~~~~~~~~~~ 752 (1122)
+..++.|+.|+-+|+. +.|..+.+.|+..++-++++... ... . -.+.++-|+.-.+.++-.+...
T Consensus 16 ~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~----~~~-~g~~~~~~l~~i~~~l~~~e~g~~l------ 82 (753)
T COG1193 16 LASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDI----LED-EGLPPLGGLNDVSEALGRLEKGGRL------ 82 (753)
T ss_pred HHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHH----Hhc-cCCCCchhhhhhHHHHHHHhhcccC------
Confidence 3489999999999999 89999999999999999887531 111 1 1366778888888887532211
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCCe
Q 001212 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1122)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~i 832 (1122)
....+..+...|.++..+..+...+..+. ...+. .++.+..+...+...+| ..|.+
T Consensus 83 --------~~~el~~i~~~l~~~~~lkr~~~~~e~~~----~~~~~-------~~~~~~~l~~~i~~~id-----~~g~i 138 (753)
T COG1193 83 --------HVEELLEISDFLRGFRALKRAIKKLERIK----RTLAL-------ALIELSDLELEINIPID-----DDGLI 138 (753)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHH-------hhhcchHHHHHHhhhhc-----ccccc
Confidence 23456677777777776665544332211 11111 23445555555666665 34555
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHH----HH-HHHhcCCCceEEEecCceEEEEecccccCCCCCcEEEeeeecce
Q 001212 833 IPHGGVDMDYDSACKKVKEIEASLTKHLK----EQ-RKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1122)
Q Consensus 833 i~~~G~d~elD~~~~~~~~i~~~L~~~l~----~~-~~~l~~~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~ 907 (1122)
.+..++.++.++..++.++..+.+.++ .. ...+.+. +++.+..+|++.|...+++.+++..+-. +..+.
T Consensus 139 --~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e~---~v~~r~~r~vlpvk~~fk~~i~giv~d~-sssg~ 212 (753)
T COG1193 139 --KDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQDR---IVTTRDGREVLPVKAEFKGAIKGIVHDT-SSSGA 212 (753)
T ss_pred --cccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhhc---eEeccCCeEEeHHHHHhhhhcCceEeec-ccccC
Confidence 577789999988887665555554444 33 3444333 5677889999999999998888776544 44677
Q ss_pred EEEecch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCC
Q 001212 908 FRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1122)
Q Consensus 908 ~rf~t~e-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1122)
..|..|. +..+++++..+..+.......+++.+.+.+.++...+..+...+++||++.+-+.++... .++.|.+.+
T Consensus 213 tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~--~~v~P~~~~- 289 (753)
T COG1193 213 TLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKAL--KGVKPDFSN- 289 (753)
T ss_pred eeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhh--ccCCCccCC-
Confidence 7888887 889999999999888888899999999999999999999999999999999999999864 678999974
Q ss_pred CCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCcc-
Q 001212 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF- 1065 (1122)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a- 1065 (1122)
...|.+.++|||++.. -||||+.++. +-+.++||||||||||+.|+++|++++|||+|.|+||.+.
T Consensus 290 ----~~~l~l~~~~HPll~~-------~v~~~i~~~~--e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gs 356 (753)
T COG1193 290 ----DGVLELLDARHPLLKE-------DVPNDLELGE--ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGS 356 (753)
T ss_pred ----CceEEeccccCccCcc-------cccccccccc--ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCC
Confidence 3579999999999974 2999999985 3578999999999999999999999999999999999876
Q ss_pred ccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1066 ~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
+|++|+.||..||..++|.+..|||..+|..++.||..++ +++|.|++
T Consensus 357 ei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DEl 404 (753)
T COG1193 357 ELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDEL 404 (753)
T ss_pred cchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHh
Confidence 9999999999999999999999999999999999996666 66666665
No 15
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.97 E-value=4.5e-31 Score=283.41 Aligned_cols=117 Identities=51% Similarity=0.802 Sum_probs=106.0
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEee
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfT 1075 (1122)
|+++|||+++.. ....|||||+.++.. ..++++||||||+|||||||++|++++|||+||||||++|+++++|+|||
T Consensus 2 ~~~~rHPll~~~--~~~~~v~ndi~l~~~-~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~ 78 (218)
T cd03286 2 FEELRHPCLNAS--TASSFVPNDVDLGAT-SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFT 78 (218)
T ss_pred cccccCCEEecc--cCCCeEEeeeEEeec-CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEE
Confidence 689999999852 235799999999753 35799999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
|||+.|++..|+||||.||.+++.||++||...++|+||+
T Consensus 79 ~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~ 118 (218)
T cd03286 79 RIGARDDIMKGESTFMVELSETANILRHATPDSLVILDEL 118 (218)
T ss_pred ecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 9999999999999999999999999999997665555554
No 16
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.96 E-value=1.4e-29 Score=272.49 Aligned_cols=119 Identities=42% Similarity=0.600 Sum_probs=107.5
Q ss_pred EEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceE
Q 001212 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073 (1122)
Q Consensus 994 l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrI 1073 (1122)
|+|+++|||+++. .....|||||+.+... ..++++||||||+|||||||++|++++|||+||||||+++++++||+|
T Consensus 1 ~~i~~~rHPlle~--~~~~~~v~n~i~~~~~-~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 1 ILIKEGRHPMIES--LLDKSFVPNDIHLSAE-GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CeeecccCCEEec--cCCCCEEEEeEEEEec-CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 4689999999986 2335799999999743 457999999999999999999999999999999999999999999999
Q ss_pred eeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1074 FVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1074 fTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
|||||+.|++..|+||||.||.+++.||++||+..++|+||+
T Consensus 78 ~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~ 119 (222)
T cd03287 78 LTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDEL 119 (222)
T ss_pred EEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccC
Confidence 999999999999999999999999999999997665555553
No 17
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.94 E-value=9.9e-28 Score=257.96 Aligned_cols=116 Identities=38% Similarity=0.558 Sum_probs=105.8
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEee
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfT 1075 (1122)
|+++|||+++.. ...|||||+.+++. ..++++||||||+|||||||++|++++|||+||||||..++++++|+||+
T Consensus 2 i~~~rHPll~~~---~~~~vpnd~~l~~~-~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~ 77 (213)
T cd03281 2 IQGGRHPLLELF---VDSFVPNDTEIGGG-GPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFT 77 (213)
T ss_pred cccccCCEEecc---CCceEcceEEecCC-CceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeee
Confidence 789999999851 34799999999853 34899999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
+|+..|++..+.|||+.||.+++.|+..|+...++|+||+
T Consensus 78 ~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~ 117 (213)
T cd03281 78 RMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEF 117 (213)
T ss_pred eeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccc
Confidence 9999999999999999999999999999998766666664
No 18
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.93 E-value=5.5e-27 Score=253.67 Aligned_cols=117 Identities=38% Similarity=0.606 Sum_probs=106.2
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEee
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfT 1075 (1122)
|++||||+++.. ....|||||+.++.. ..++++||||||||||||||+||++++|||+||||||++++++++|+||+
T Consensus 2 ~~~~~hpll~~~--~~~~~v~~~~~~~~~-~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~ 78 (222)
T cd03285 2 LKEARHPCVEAQ--DDVAFIPNDVTLTRG-KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA 78 (222)
T ss_pred ccccCCCEEecc--CCCCeEEeeEEEeec-CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe
Confidence 689999999962 345799999999853 46899999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
|+|..|++..+.||||.||.+++.||+.++...++|+||+
T Consensus 79 ~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp 118 (222)
T cd03285 79 RVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDEL 118 (222)
T ss_pred eeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999999999999999999999999999987655555554
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.93 E-value=1.8e-26 Score=246.12 Aligned_cols=116 Identities=37% Similarity=0.549 Sum_probs=106.5
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEee
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfT 1075 (1122)
|+++|||+++. ....|||||+.++.. ..++++||||||||||||||+++++++|||+||||||.+++++++|+||+
T Consensus 2 i~~~~hpll~~---~~~~~v~~~~~~~~~-~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~ 77 (204)
T cd03282 2 IRDSRHPILDR---DKKNFIPNDIYLTRG-SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLS 77 (204)
T ss_pred cccccCCeEec---cCCcEEEeeeEEeeC-CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeE
Confidence 68999999985 245799999999853 45899999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
+++..|++..+.|||+.||.+++.|++.|++..++|+||+
T Consensus 78 ~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~ 117 (204)
T cd03282 78 RLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDEL 117 (204)
T ss_pred ecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccc
Confidence 9999999999999999999999999999997766666664
No 20
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.92 E-value=5.4e-26 Score=245.01 Aligned_cols=118 Identities=45% Similarity=0.623 Sum_probs=105.7
Q ss_pred EEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEe
Q 001212 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIF 1074 (1122)
Q Consensus 995 ~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIf 1074 (1122)
+|+++|||+++.. .....|||||+.++.. .++++||||||||||||||++|++++|||+||+|||.++.++++|+||
T Consensus 1 ~i~~~~hp~~~~~-~~~~~~v~n~~~l~~~--~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~ 77 (216)
T cd03284 1 EIEGGRHPVVEQV-LDNEPFVPNDTELDPE--RQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF 77 (216)
T ss_pred CcccccCCEEeec-cCCCceEeeeEEecCC--ceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe
Confidence 3789999999862 2235799999999853 389999999999999999999999999999999999999999999999
Q ss_pred eccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHHH
Q 001212 1075 VRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRYI 1115 (1122)
Q Consensus 1075 TRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~~ 1115 (1122)
++|+..|++..|+|+|+.||.+++.||..|++..++|+||.
T Consensus 78 ~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp 118 (216)
T cd03284 78 TRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEI 118 (216)
T ss_pred ccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99999999999999999999999999999987655555553
No 21
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.91 E-value=4.3e-23 Score=220.53 Aligned_cols=91 Identities=47% Similarity=0.776 Sum_probs=80.0
Q ss_pred HHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHHHhcCCC
Q 001212 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1122)
Q Consensus 651 ~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr~~Lk~l 730 (1122)
++|+++||||++.++|+.+||||++||+|+|++|+|+||+||++|++|+++|+.||++|++|.+ |+.+...++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~-n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQ-NEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHH-THHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hhhHhhhhhhhhhcc
Confidence 5899999999998888889999999999999999999999999999999999999999999997 677788999999999
Q ss_pred CcHHHHHHHHhc
Q 001212 731 PDMERLLARLFA 742 (1122)
Q Consensus 731 pDleRll~ri~~ 742 (1122)
+|+++++.++..
T Consensus 80 ~di~~~l~~l~~ 91 (204)
T PF05192_consen 80 PDIERILKRLRS 91 (204)
T ss_dssp -SHHHHHHHHHT
T ss_pred chHHHHHHHHHH
Confidence 999999999964
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.88 E-value=4.6e-23 Score=220.21 Aligned_cols=114 Identities=28% Similarity=0.434 Sum_probs=101.6
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCc-cccCCcceEe
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRIF 1074 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-a~l~ivDrIf 1074 (1122)
|+++|||+++.. ...|||||+.++.. .++++||||||||||||||+++++++|||+||||||.. +.++.+|+||
T Consensus 2 ~~~~~hp~~~~~---~~~~~~~~~~i~~~--~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~ 76 (200)
T cd03280 2 LREARHPLLPLQ---GEKVVPLDIQLGEN--KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIF 76 (200)
T ss_pred CcccCCCEEecc---CCceEcceEEECCC--ceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEE
Confidence 789999999852 46799999999853 37999999999999999999999999999999999984 7899999999
Q ss_pred eccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHH
Q 001212 1075 VRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRY 1114 (1122)
Q Consensus 1075 TRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~ 1114 (1122)
+++|..|++..+.|+|+.||.+...|++.++...++|+||
T Consensus 77 ~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDE 116 (200)
T cd03280 77 ADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDE 116 (200)
T ss_pred EecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 9999999999999999999999999999888654444443
No 23
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.87 E-value=1.3e-22 Score=217.18 Aligned_cols=114 Identities=49% Similarity=0.665 Sum_probs=101.7
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEee
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfT 1075 (1122)
|+++|||+++.. .....|||||+.++. .++++||||||||||||||+++.+++|||+|+||||..++++++|++|+
T Consensus 2 ~~~~~~p~l~~~-~~~~~~~~~~~~l~~---~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~ 77 (202)
T cd03243 2 IKGGRHPVLLAL-TKGETFVPNDINLGS---GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT 77 (202)
T ss_pred cccccCCEEecc-ccCCceEeeeEEEcC---CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE
Confidence 789999999852 124579999999985 3789999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHH
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCR 1113 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~ 1113 (1122)
+++..|++..+.|+|+.||.+++.|+..++..-++|+|
T Consensus 78 ~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllD 115 (202)
T cd03243 78 RIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLID 115 (202)
T ss_pred EecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEe
Confidence 99999999999999999999999999988854333333
No 24
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.86 E-value=2.3e-22 Score=214.21 Aligned_cols=110 Identities=38% Similarity=0.500 Sum_probs=99.8
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEee
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfT 1075 (1122)
++++|||+++. ..+|+||+.++. .++++||||||||||||||+++.+++|||+|+||||..+.++ +|++|+
T Consensus 2 ~~~~~hp~~~~-----~~~v~n~i~l~~---g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~ 72 (199)
T cd03283 2 AKNLGHPLIGR-----EKRVANDIDMEK---KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFT 72 (199)
T ss_pred CcccCCCeecC-----CCeecceEEEcC---CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEE
Confidence 68999999984 369999999985 289999999999999999999999999999999999999999 899999
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhcc--ccHHHHHHH
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFF--CSLNQLCRY 1114 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT--~sl~~l~~~ 1114 (1122)
++...|++..|.|+|+.||.+++.||..++ ...++|+||
T Consensus 73 ~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDE 113 (199)
T cd03283 73 SIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDE 113 (199)
T ss_pred eccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEec
Confidence 999999999999999999999999999998 544444443
No 25
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.83 E-value=1.3e-21 Score=206.28 Aligned_cols=86 Identities=50% Similarity=0.684 Sum_probs=80.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSL 1108 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl 1108 (1122)
+++||||||||||||||++|++++|||+||||||++++++++|+||+++|..|++..|.|||+.||.+++.||..||...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHH
Q 001212 1109 NQLCRY 1114 (1122)
Q Consensus 1109 ~~l~~~ 1114 (1122)
++|+||
T Consensus 81 llllDE 86 (185)
T smart00534 81 LVLLDE 86 (185)
T ss_pred EEEEec
Confidence 444444
No 26
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.54 E-value=2.5e-15 Score=155.22 Aligned_cols=85 Identities=42% Similarity=0.479 Sum_probs=77.6
Q ss_pred EeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHH----------cCCcccCCcc
Q 001212 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----------VGADVPAEIF 1065 (1122)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ----------iG~fVPA~~a 1065 (1122)
|..++||.+ ++|||+.+.. +++.+|||||||||||+||+++++++||| .||+|||.++
T Consensus 2 i~~~~~~~~---------~~~~~i~~~~---~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 69 (162)
T cd03227 2 IVLGRFPSY---------FVPNDVTFGE---GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA 69 (162)
T ss_pred ceeCCCCEE---------EeccEEecCC---CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE
Confidence 567899986 7999999974 27999999999999999999999999999 9999999998
Q ss_pred ccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhcc
Q 001212 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFF 1105 (1122)
Q Consensus 1066 ~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT 1105 (1122)
.+ ||++++ .|+++.++..++.+|..++
T Consensus 70 ~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~ 96 (162)
T cd03227 70 EL-----IFTRLQ--------LSGGEKELSALALILALAS 96 (162)
T ss_pred EE-----ehheee--------ccccHHHHHHHHHHHHhcC
Confidence 87 999887 8888999999999999876
No 27
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.37 E-value=6.7e-12 Score=125.42 Aligned_cols=131 Identities=27% Similarity=0.396 Sum_probs=84.9
Q ss_pred cEEEEEEecCCCCCCCCCCcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcC
Q 001212 453 SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTR 532 (1122)
Q Consensus 453 ~yl~aI~e~~~~~~~~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~ 532 (1122)
|||+||.++. ....||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+......+.....
T Consensus 1 Nyl~aI~~~~-------~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~~~~~~~~ 70 (137)
T PF05188_consen 1 NYLAAIYEKN-------DEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISALLSSLKN 70 (137)
T ss_dssp -EEEEEEEET-------CSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHHHHHCCTT
T ss_pred CEEEEEEEec-------CCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccchhhhhhcc
Confidence 6999999951 235699999999999999999998 899999999999999999988765433111211111
Q ss_pred CCccccccCCccccChhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHH
Q 001212 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTL 612 (1122)
Q Consensus 533 ~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall 612 (1122)
........+. .+++.....+.+...|..... .+.+. ...++.+++|+|++|
T Consensus 71 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~---------------~~~~~-------------~~~~~~~~~Al~all 121 (137)
T PF05188_consen 71 SFFKVTETPS-WYFDSEFASEDIEEQFGVADL---------------DGFGL-------------EEDKELALSALGALL 121 (137)
T ss_dssp TCCEEEEETC-GGGSHHHHHHHHHHHCTSSST---------------CCCTT-------------GGGGHHHHHHHHHHH
T ss_pred ccceeeecch-hhhhhHHHHHHHHHhhccccc---------------cccCc-------------cCCCHHHHHHHHHHH
Confidence 1111112222 334455566666665532110 11110 013578999999999
Q ss_pred HHHHHhccch
Q 001212 613 FYLKKSFLDE 622 (1122)
Q Consensus 613 ~YL~~~~l~~ 622 (1122)
.||+.++.+.
T Consensus 122 ~Yl~~t~~~~ 131 (137)
T PF05188_consen 122 KYLEETQKSE 131 (137)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHCccc
Confidence 9999987663
No 28
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.34 E-value=1.2e-11 Score=115.03 Aligned_cols=92 Identities=41% Similarity=0.554 Sum_probs=87.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCceEEEEecccccCCCCCcEEEeeeecceEEEecchHH
Q 001212 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1122)
Q Consensus 837 G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~ 916 (1122)
|+|++||.+++.+.+++++|+++++++++.++.++++|...++.||+|+||.....++|.+|+..+++++..||+|++|.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~ 80 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELK 80 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHH
Confidence 78999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001212 917 KLLGELSQAESE 928 (1122)
Q Consensus 917 ~l~~~l~~~~~~ 928 (1122)
+|+.++.+++++
T Consensus 81 ~L~~~~~~~~ee 92 (92)
T PF05190_consen 81 ELNEELKEAEEE 92 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 29
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.15 E-value=6e-11 Score=96.04 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=39.1
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceE
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKI 154 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~ 154 (1122)
-.|.+|++|||+++.||+|.|++||..++.|.|.|+||++ ++|+..+|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 4799999999999999999999999999999999999998 55655554
No 30
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=97.94 E-value=3.7e-06 Score=90.50 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=52.0
Q ss_pred ccccCCccccceeEEeccCCCeEEeEEEEe-eeCCCCeEEEEccCCc----chhcccC---cceEEEEe
Q 001212 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKS-FDKECNKHLVQYDDGE----DELLDLG---KEKIEWVQ 158 (1122)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~-~~~~~~~h~v~Yddg~----~e~~~l~---~e~~~~~~ 158 (1122)
+....+++||++|..-||+++.||++.|+. |....++|.+.||..+ ++|++|. +|+|+|..
T Consensus 153 ~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 153 GNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 344467799999999999999999999999 5566779999998777 8888887 89999984
No 31
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=97.55 E-value=6.5e-06 Score=99.41 Aligned_cols=105 Identities=10% Similarity=-0.128 Sum_probs=85.6
Q ss_pred eecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC-ccccCCcceEee
Q 001212 997 KSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-IFEISPVDRIFV 1075 (1122)
Q Consensus 997 ~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~-~a~l~ivDrIfT 1075 (1122)
.+.+||++.++- .-.+.|+|+.+-.+ ..-.-..||+||+|++|||+|||-+|-|+++||.||+. .++.|.=| +-.
T Consensus 627 ~Qd~~~fIpNdv--~le~~~~~~~IiTG-pNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D-~q~ 702 (902)
T KOG0219|consen 627 GQDEIPFIPNDV--VLEKGKCRMLIITG-PNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGD-SQL 702 (902)
T ss_pred ccccCCCCCCcc--ccccCCceEEEEeC-CCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccch-hhh
Confidence 357899998741 23688999988542 22346899999999999999999999999999999998 56777776 455
Q ss_pred ccCCccccccCCChHHHHHHHHHHHHHhcc
Q 001212 1076 RMGAKDHIMAGQSTFLTELSETALMLVRFF 1105 (1122)
Q Consensus 1076 RiGa~D~i~~g~STFmvEM~Eta~IL~~AT 1105 (1122)
+-++.+....+.++|+.+|.+.+.++.-++
T Consensus 703 kG~STFM~Emleta~Ilr~at~~SliiiDE 732 (902)
T KOG0219|consen 703 KGISTFMAEMLETASILRRATKNSLIIIDE 732 (902)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 677899999999999999999988776554
No 32
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.14 E-value=0.00051 Score=57.87 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=39.8
Q ss_pred ccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC-CcchhcccC
Q 001212 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1122)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~~~l~ 150 (1122)
.-+|..|.+.| .|+.||.|+|+++++. +.+.|.|.| |..|++...
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 34899999999 9999999999999988 889999977 999887643
No 33
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.95 E-value=0.0011 Score=53.76 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=38.0
Q ss_pred cceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC-CcchhcccC
Q 001212 107 RKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1122)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~~~l~ 150 (1122)
|..|.+.|++|..||.|+|.+.++ .+...|.|.| |..|.+.++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7778999977 998887653
No 34
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.90 E-value=0.0014 Score=56.22 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.4
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD 141 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 141 (1122)
-+|..|.++|+.++.||.|+|+.++. .++|.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6679999987
No 35
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0011 Score=68.70 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=26.3
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|-+-++.+.. ..++.|||||++||||+||.+|
T Consensus 18 f~~L~f~l~~---Ge~~~i~G~NG~GKTtLLRila 49 (209)
T COG4133 18 FSDLSFTLNA---GEALQITGPNGAGKTTLLRILA 49 (209)
T ss_pred ecceeEEEcC---CCEEEEECCCCCcHHHHHHHHH
Confidence 6666677764 3589999999999999999984
No 36
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.74 E-value=0.0012 Score=67.04 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=29.2
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.-|=|.+.|.-. .+.++.||||.++|||||||+||.+.
T Consensus 16 a~il~~isl~v~-~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 16 AKILNNISLSVR-AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred Ceeecceeeeec-CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 455566666432 34589999999999999999999875
No 37
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=96.67 E-value=0.0026 Score=60.89 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=34.9
Q ss_pred CCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchh
Q 001212 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDEL 146 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~ 146 (1122)
|.++||.||-..|-+++-||.|+|+. +...++++|.+|||.+-.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~ 44 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECR 44 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccce
Confidence 57899999999999777889999999 578889999999998643
No 38
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.41 E-value=0.0029 Score=54.23 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=24.5
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
-++.+.. ...+.+|||||++||||+|-.+..+.
T Consensus 15 ~~~~~~~--~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 15 ETIDFDP--RGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred eEEeecC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455542 12479999999999999999876654
No 39
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.0035 Score=68.83 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||+|||||+||.+.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iL 51 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAIL 51 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999873
No 40
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.10 E-value=0.0048 Score=68.09 Aligned_cols=51 Identities=29% Similarity=0.312 Sum_probs=38.1
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH--------------------HHHHcCCcccCCc
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI 1064 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~ 1064 (1122)
.+|=+|+.+.-. .+.++.|-|||++||||+||.++=+. -+|+.=+|||-+.
T Consensus 15 ~~il~~ls~~i~-~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~ 85 (258)
T COG1120 15 KPILDDLSFSIP-KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSP 85 (258)
T ss_pred eeEEecceEEec-CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCC
Confidence 455556666532 35799999999999999999987543 3677778888874
No 41
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.0075 Score=61.85 Aligned_cols=32 Identities=38% Similarity=0.595 Sum_probs=25.0
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+...|+.+.. ..++.|+|||++||||+||.++
T Consensus 15 l~~~~~~i~~---g~~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 15 LDNVSLTLKA---GEIVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred EeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHh
Confidence 3344566653 3689999999999999999985
No 42
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.83 E-value=0.0054 Score=61.10 Aligned_cols=27 Identities=41% Similarity=0.684 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCccc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVP 1061 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVP 1061 (1122)
+.+++|+|||++||||+||.+ .|.+-|
T Consensus 11 g~~~~i~G~nGsGKStLl~~l--------~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKAL--------AGLLPP 37 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHH--------TTSSHE
T ss_pred CCEEEEEccCCCccccceeee--------cccccc
Confidence 468999999999999999987 566655
No 43
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.74 E-value=0.0071 Score=65.51 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++-+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998643
No 44
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.73 E-value=0.0084 Score=62.95 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.0
Q ss_pred ceEEEEEecCCCchHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqv 1047 (1122)
..++.|+|||++||||+||.+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999965
No 45
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0087 Score=63.27 Aligned_cols=68 Identities=22% Similarity=0.340 Sum_probs=42.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC-ccccCCcceEeeccCCccccccCCChH-HH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-IFEISPVDRIFVRMGAKDHIMAGQSTF-LT 1092 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~-~a~l~ivDrIfTRiGa~D~i~~g~STF-mv 1092 (1122)
+=+++++.-. ...+..|-|||++||||+||.. .|-+-|.. .+.+.=.+ .+++ -.
T Consensus 16 ll~~vsl~~~-pGev~ailGPNGAGKSTlLk~L--------sGel~p~~G~v~~~g~~---------------l~~~~~~ 71 (259)
T COG4559 16 LLDGVSLDLR-PGEVLAILGPNGAGKSTLLKAL--------SGELSPDSGEVTLNGVP---------------LNSWPPE 71 (259)
T ss_pred eccCcceecc-CCcEEEEECCCCccHHHHHHHh--------hCccCCCCCeEeeCCcC---------------hhhCCHH
Confidence 3344555421 2468999999999999999987 67777765 34433222 2333 34
Q ss_pred HHHHHHHHHHhccc
Q 001212 1093 ELSETALMLVRFFC 1106 (1122)
Q Consensus 1093 EM~Eta~IL~~AT~ 1106 (1122)
||.....+|.+.|.
T Consensus 72 ~lA~~raVlpQ~s~ 85 (259)
T COG4559 72 ELARHRAVLPQNSS 85 (259)
T ss_pred HHHHHhhhcccCcc
Confidence 56666666666654
No 46
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.58 E-value=0.013 Score=63.92 Aligned_cols=32 Identities=44% Similarity=0.590 Sum_probs=23.8
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
=+|+.+.- ..+.++.|+|||++|||||||.++
T Consensus 23 l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 23 LNNISFSL-RAGEFKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred eeccEEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444432 134689999999999999999875
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.011 Score=64.21 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
-+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 16 l~~vs~~i~-~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 16 VRGVSFRVR-RGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred eeceeEEEC-CCCEEEEECCCCCCHHHHHHHHh
Confidence 344444321 34689999999999999999885
No 48
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.50 E-value=0.012 Score=62.50 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 49
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.0085 Score=64.86 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=23.9
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.-|=.|++..-.. ..=|+|+|||++||||+||.++
T Consensus 44 k~iL~~isW~V~~-ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 44 KKILGDLSWQVNP-GEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred EeeccccceeecC-CCcEEEECCCCCCHHHHHHHHh
Confidence 3444455443211 2349999999999999999873
No 50
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.011 Score=67.74 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=25.8
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.|.- ..+.+++|.|||++||||+||.||
T Consensus 18 ~l~~i~l~i-~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 18 VLKDVNLDI-EDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555543 235799999999999999999995
No 51
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.43 E-value=0.01 Score=63.65 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999885
No 52
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.42 E-value=0.011 Score=64.21 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 53
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.41 E-value=0.013 Score=64.95 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=24.3
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
-+|+.+.- ..+.++.|+|||++||||+||.++-
T Consensus 19 l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (253)
T TIGR02323 19 CRDVSFDL-YPGEVLGIVGESGSGKSTLLGCLAG 51 (253)
T ss_pred eecceEEE-eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444432 1346899999999999999998853
No 54
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.40 E-value=0.011 Score=64.58 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999999863
No 55
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.35 E-value=0.012 Score=63.77 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 3689999999999999999884
No 56
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.014 Score=62.81 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 57
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.012 Score=63.39 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999874
No 58
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.30 E-value=0.015 Score=62.51 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 59
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.013 Score=64.44 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999884
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.27 E-value=0.015 Score=62.55 Aligned_cols=22 Identities=55% Similarity=0.880 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 61
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.27 E-value=0.013 Score=64.16 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 62
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.014 Score=61.02 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 63
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.013 Score=62.38 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..++.|+|||++||||+||.++
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999987
No 64
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.22 E-value=0.016 Score=58.79 Aligned_cols=68 Identities=28% Similarity=0.209 Sum_probs=40.4
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHH
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSET 1097 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Et 1097 (1122)
|+.+.. +.++.|+|||++||||++|.+ .|..-| .+-++.+-++ .+++-- ...|.-+.-...+
T Consensus 20 ~~~~~~---Ge~~~i~G~nGsGKStLl~~l--------~G~~~~-~~G~i~~~~~--~~i~~~----~~lS~G~~~rv~l 81 (144)
T cd03221 20 SLTINP---GDRIGLVGRNGAGKSTLLKLI--------AGELEP-DEGIVTWGST--VKIGYF----EQLSGGEKMRLAL 81 (144)
T ss_pred EEEECC---CCEEEEECCCCCCHHHHHHHH--------cCCCCC-CceEEEECCe--EEEEEE----ccCCHHHHHHHHH
Confidence 455543 368999999999999999987 454433 3334433221 111110 1177777766666
Q ss_pred HHHHHh
Q 001212 1098 ALMLVR 1103 (1122)
Q Consensus 1098 a~IL~~ 1103 (1122)
+..|-.
T Consensus 82 aral~~ 87 (144)
T cd03221 82 AKLLLE 87 (144)
T ss_pred HHHHhc
Confidence 665543
No 65
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.22 E-value=0.013 Score=63.29 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998853
No 66
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.22 E-value=0.014 Score=64.32 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 36 il~~vs~~i~-~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 36 ALKGISFTIE-KGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred eeeceeEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 3444444321 34689999999999999999985
No 67
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.015 Score=60.59 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++=+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998543
No 68
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.22 E-value=0.014 Score=63.17 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=25.4
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++.+....+..+.+|.|||++||||+|+.++.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHhee
Confidence 555554322346899999999999999999873
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.21 E-value=0.013 Score=63.73 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 70
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.19 E-value=0.015 Score=60.44 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++.|+|||++||||+||.++=
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 71
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.19 E-value=0.016 Score=62.10 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999986
No 72
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.19 E-value=0.017 Score=63.18 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 73
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.17 E-value=0.015 Score=62.46 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999854
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.16 E-value=0.017 Score=62.63 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 75
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.16 E-value=0.015 Score=62.96 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999986
No 76
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.14 E-value=0.016 Score=64.33 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 77
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.014 Score=63.39 Aligned_cols=22 Identities=50% Similarity=0.789 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999885
No 78
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.14 E-value=0.015 Score=62.72 Aligned_cols=22 Identities=45% Similarity=0.834 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 79
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.14 E-value=0.018 Score=61.40 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999874
No 80
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.13 E-value=0.015 Score=63.58 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 81
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.13 E-value=0.014 Score=64.31 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 82
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.12 E-value=0.016 Score=60.05 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999885
No 83
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.12 E-value=0.016 Score=62.63 Aligned_cols=22 Identities=45% Similarity=0.837 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999874
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.015 Score=63.67 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 85
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.016 Score=63.24 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 86
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=95.08 E-value=0.52 Score=56.14 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=19.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.=++|||||++|||++-|-+|
T Consensus 508 G~hLLItGPNGCGKSSLfRILg 529 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILG 529 (728)
T ss_pred CceEEEECCCCccHHHHHHHHh
Confidence 3558999999999999999764
No 87
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.08 E-value=0.21 Score=61.31 Aligned_cols=49 Identities=29% Similarity=0.291 Sum_probs=35.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeecc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRM 1077 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRi 1077 (1122)
.-+.|+|||++||||+||.++=.. =...|...-....+++.||+=...+
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~-~~~~G~v~~g~~v~igyf~Q~~~~l 397 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGEL-GPLSGTVKVGETVKIGYFDQHRDEL 397 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhc-ccCCceEEeCCceEEEEEEehhhhc
Confidence 348899999999999999762111 1116777777778899999766443
No 88
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.08 E-value=0.015 Score=62.85 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999884
No 89
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.016 Score=62.39 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=23.0
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.-. .. ++.|+|||++||||+||.++
T Consensus 17 ~~vs~~i~-~g-~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 17 DGVSLTLG-PG-MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred cceeEEEc-CC-cEEEECCCCCCHHHHHHHHh
Confidence 44444422 24 79999999999999999986
No 90
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.06 E-value=0.02 Score=61.64 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=24.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+++.+.-. .+.++.|+|||++||||+|+.++
T Consensus 17 ~l~~is~~i~-~Ge~~~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 17 LFSGLSFTLA-AGEALVLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred EEeceEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 3344444321 34689999999999999999985
No 91
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.05 E-value=0.018 Score=64.66 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=25.2
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+-+|+.+.=. .+.++.|+|||++||||+||.++
T Consensus 26 ~il~~vs~~i~-~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 26 TVLNNVSLSLK-SGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred eeEeceeEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 34455555421 34689999999999999999875
No 92
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.05 E-value=0.017 Score=60.91 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.04 E-value=0.019 Score=63.30 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=25.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-+|+.+.-. .+.++.|+|||++||||+||.++-
T Consensus 18 ~l~~~sl~i~-~Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 18 VVEDVSLTVN-SGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred EEeeeeEEEc-CCcEEEEECCCCCCHHHHHHHHhC
Confidence 4445555421 346899999999999999999863
No 94
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.04 E-value=0.017 Score=63.24 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999885
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.03 E-value=0.016 Score=63.78 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998863
No 96
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.02 E-value=0.018 Score=62.15 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 97
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.019 Score=61.85 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 98
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.02 Score=63.65 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=25.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-+++.+.- ..+.++.|+|||++||||+||.++=
T Consensus 21 il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 21 ALHDISLEF-EQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred eecceeEEE-eCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444432 1346899999999999999999863
No 99
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.01 E-value=0.017 Score=62.95 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998763
No 100
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.00 E-value=0.018 Score=62.17 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 101
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.00 E-value=0.018 Score=60.42 Aligned_cols=23 Identities=39% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 102
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.00 E-value=0.017 Score=62.63 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 103
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.017 Score=64.33 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 104
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.98 E-value=0.022 Score=60.11 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=24.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
|-.-++.++ +.+.||+|||++||||+|..+.++.
T Consensus 10 ~~~~~i~f~----~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFS----PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE------SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcC----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 333345553 3589999999999999998886665
No 105
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.98 E-value=0.019 Score=60.00 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998863
No 106
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.98 E-value=0.018 Score=62.89 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 107
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.97 E-value=0.017 Score=63.32 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999885
No 108
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.018 Score=63.03 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 109
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.018 Score=63.39 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999853
No 110
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.019 Score=64.18 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999863
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=94.92 E-value=0.019 Score=62.38 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 112
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.91 E-value=0.018 Score=64.68 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++|||||||.++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 113
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.91 E-value=0.026 Score=62.63 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=24.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+=+|+.+.- ..+.++.|+|||++||||+||.++-
T Consensus 22 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 22 ILKGLNLSI-NKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eeecceeEE-cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 344444432 1246899999999999999998754
No 114
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.018 Score=60.46 Aligned_cols=94 Identities=22% Similarity=0.344 Sum_probs=59.9
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHc-----CCcc---cCC-ccccCCc---ceEeeccCCcccccc
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV-----GADV---PAE-IFEISPV---DRIFVRMGAKDHIMA 1085 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQi-----G~fV---PA~-~a~l~iv---DrIfTRiGa~D~i~~ 1085 (1122)
|+.+.. ..+++.-|-|||++||||+||++|-+.+=.|= ||-. |.. .-+||+. -.||.||-+.+||.
T Consensus 20 dVSF~a-e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~- 97 (245)
T COG4555 20 DVSFEA-EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK- 97 (245)
T ss_pred heeEEe-ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH-
Confidence 555543 34689999999999999999999987654431 1111 111 1134443 25788999999985
Q ss_pred CCChHHHHHHHHHHHH-Hhcccc---HHHHHHHHhh
Q 001212 1086 GQSTFLTELSETALML-VRFFCS---LNQLCRYIHH 1117 (1122)
Q Consensus 1086 g~STFmvEM~Eta~IL-~~AT~s---l~~l~~~~~~ 1117 (1122)
|+.++..++..= +.-|.. .+.|.++++.
T Consensus 98 ----~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r 129 (245)
T COG4555 98 ----YFARLNGLSRKEIKARIAELSKRLQLLEYLDR 129 (245)
T ss_pred ----HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH
Confidence 888888877662 222232 3555666553
No 115
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.019 Score=63.20 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999863
No 116
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.90 E-value=0.019 Score=60.31 Aligned_cols=64 Identities=23% Similarity=0.121 Sum_probs=39.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHh
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVR 1103 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~ 1103 (1122)
..++.|.|||++||||+||.+ .|..-| .+-++.+-+.-...+ .+.. ..|.-+.-...+|..|-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l--------~Gl~~p-~~G~i~~~g~~i~~~--~q~~--~LSgGq~qrv~laral~~ 88 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKIL--------AGQLIP-NGDNDEWDGITPVYK--PQYI--DLSGGELQRVAIAAALLR 88 (177)
T ss_pred CCEEEEECCCCChHHHHHHHH--------HcCCCC-CCcEEEECCEEEEEE--cccC--CCCHHHHHHHHHHHHHhc
Confidence 358999999999999999987 344433 333443322111111 1111 178888888788776654
No 117
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.89 E-value=0.021 Score=62.83 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhc
Confidence 46899999999999999998863
No 118
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.87 E-value=0.02 Score=62.04 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 46899999999999999999863
No 119
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.02 Score=62.73 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++-+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999988643
No 120
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.022 Score=59.77 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999875
No 121
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.85 E-value=0.021 Score=62.25 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 122
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.84 E-value=0.022 Score=61.53 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++=+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998643
No 123
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.022 Score=62.37 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 124
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.83 E-value=0.02 Score=63.53 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999984
No 125
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.021 Score=61.09 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 126
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.80 E-value=0.022 Score=63.45 Aligned_cols=68 Identities=29% Similarity=0.401 Sum_probs=40.4
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH------------HHHHcCCcccCCccccCCcc---eEeeccCCccc
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------ILAQVGADVPAEIFEISPVD---RIFVRMGAKDH 1082 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv------------ILAQiG~fVPA~~a~l~ivD---rIfTRiGa~D~ 1082 (1122)
||.+.-. .+.++.|+|||++||||+||.||=+- .|... .-++....++|.+= .+|-+|--.||
T Consensus 20 di~l~i~-~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~-~~~~~~~R~VGfvFQ~YALF~HmtVa~N 97 (345)
T COG1118 20 DISLDIK-SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV-SNLAVRDRKVGFVFQHYALFPHMTVADN 97 (345)
T ss_pred cceeeec-CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccch-hccchhhcceeEEEechhhcccchHHhh
Confidence 4555432 35789999999999999999886321 00000 01333333444332 15667777778
Q ss_pred cccCC
Q 001212 1083 IMAGQ 1087 (1122)
Q Consensus 1083 i~~g~ 1087 (1122)
|.-|.
T Consensus 98 IAFGl 102 (345)
T COG1118 98 IAFGL 102 (345)
T ss_pred hhhcc
Confidence 77665
No 127
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.79 E-value=0.022 Score=59.89 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 128
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.021 Score=62.63 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999963
No 129
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.79 E-value=0.021 Score=64.08 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 39 Ge~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 39 GQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 130
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.76 E-value=0.022 Score=64.88 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=27.2
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+=||+.+.-. .+.+..|.|||++||||+||.++
T Consensus 18 ~~~l~~vs~~i~-~Gei~gllG~NGAGKTTllk~l~ 52 (293)
T COG1131 18 KTALDGVSFEVE-PGEIFGLLGPNGAGKTTLLKILA 52 (293)
T ss_pred CEEEeceeEEEc-CCeEEEEECCCCCCHHHHHHHHh
Confidence 355566766532 35799999999999999999883
No 131
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.02 Score=62.90 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999885
No 132
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.74 E-value=0.023 Score=61.61 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998863
No 133
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.74 E-value=0.022 Score=63.56 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 134
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.73 E-value=0.023 Score=62.47 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 135
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.021 Score=64.17 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999875
No 136
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.73 E-value=0.022 Score=60.67 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999863
No 137
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.72 E-value=0.021 Score=62.92 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.+|.|||++||||+|+.++.+
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999743
No 138
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.72 E-value=0.023 Score=60.99 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999874
No 139
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.71 E-value=0.027 Score=61.94 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 140
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.70 E-value=0.027 Score=61.51 Aligned_cols=33 Identities=36% Similarity=0.394 Sum_probs=24.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+|+.+.-. .+.++.|+|||++||||++|.++
T Consensus 37 il~~vs~~i~-~Ge~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 37 ALKDVSFEVP-RGERIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred EEeeeEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 4444444321 34689999999999999999985
No 141
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.70 E-value=0.022 Score=66.19 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.0
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 55 ~~l~~is~~i-~~Gei~gLlGpNGaGKSTLl~~L~ 88 (340)
T PRK13536 55 AVVNGLSFTV-ASGECFGLLGPNGAGKSTIARMIL 88 (340)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455666542 234799999999999999999984
No 142
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.026 Score=62.54 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 143
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.024 Score=62.59 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 144
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.68 E-value=0.023 Score=65.01 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 145
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.67 E-value=0.024 Score=62.46 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 146
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.028 Score=63.12 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 147
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.65 E-value=0.028 Score=59.89 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999854
No 148
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.64 E-value=0.024 Score=60.61 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.+|+|||++||||+|+.++.+.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999997653
No 149
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=94.63 E-value=0.025 Score=62.76 Aligned_cols=25 Identities=32% Similarity=0.576 Sum_probs=22.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
++.+|+|||++||||+|++|+.+.-
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998863
No 150
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.63 E-value=0.024 Score=62.41 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998853
No 151
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.63 E-value=0.025 Score=61.62 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998853
No 152
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.63 E-value=0.028 Score=64.25 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 17 ~l~~is~~i-~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 17 ALDEVSFEA-QKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred EEEEeEEEE-eCCeEEEEECCCCCCHHHHHHHHh
Confidence 445555542 234689999999999999999885
No 153
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.025 Score=62.66 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999876
No 154
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.029 Score=62.18 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++-+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 29 RQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998653
No 155
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.60 E-value=0.026 Score=62.47 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 156
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.59 E-value=0.026 Score=62.18 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 157
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.58 E-value=0.028 Score=62.93 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=25.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 25 ~il~~isl~i~-~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 25 PVLTNVSLSIE-EGETVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred EEeeCceeEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 34455555421 34689999999999999999885
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.58 E-value=0.025 Score=63.06 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++|||||||.++=+
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999988743
No 159
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.58 E-value=0.025 Score=63.75 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLN 49 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 160
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.58 E-value=0.029 Score=62.39 Aligned_cols=22 Identities=50% Similarity=0.700 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 161
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.56 E-value=0.03 Score=64.07 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 162
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.03 Score=61.76 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 163
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.03 Score=62.26 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 164
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.025 Score=63.68 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 165
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.025 Score=63.55 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998863
No 166
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.025 Score=63.90 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999985
No 167
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.54 E-value=0.029 Score=62.57 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 168
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.54 E-value=0.027 Score=62.66 Aligned_cols=31 Identities=42% Similarity=0.480 Sum_probs=23.7
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 24 ~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 24 NNINIKI-LKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred cceeeEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444432 134689999999999999999986
No 169
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.027 Score=63.30 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 170
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.53 E-value=0.028 Score=60.97 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999863
No 171
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.027 Score=63.26 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=25.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+=+|+.+.- ..+.++.|+|||++||||+||.++=
T Consensus 28 il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 28 AVKNVFCDI-PRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred EEcceEEEE-cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334555542 1346899999999999999999864
No 172
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.50 E-value=0.025 Score=64.24 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 173
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.50 E-value=0.029 Score=60.85 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998863
No 174
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.027 Score=62.50 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999964
No 175
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.027 Score=63.89 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=25.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+=+|+.+.- ..+.++.|+|||++|||||||.++-
T Consensus 54 il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 54 AVKKVNADI-LSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334555532 1346899999999999999999964
No 176
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.47 E-value=0.027 Score=62.75 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999854
No 177
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.47 E-value=0.032 Score=59.75 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 178
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.029 Score=62.23 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999874
No 179
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.45 E-value=0.027 Score=64.58 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=26.2
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 21 ~~l~~vsl~i~-~Gei~gllGpNGaGKSTLl~~l~ 54 (306)
T PRK13537 21 LVVDGLSFHVQ-RGECFGLLGPNGAGKTTTLRMLL 54 (306)
T ss_pred EEEecceEEEe-CCcEEEEECCCCCCHHHHHHHHh
Confidence 34566666532 34689999999999999999985
No 180
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.45 E-value=0.026 Score=62.46 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999998854
No 181
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.44 E-value=0.031 Score=61.88 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 182
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.033 Score=61.78 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999863
No 183
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.029 Score=62.93 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=24.6
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+|+.+.-. .+.++.|+|||++||||+||.++=.
T Consensus 37 ~~vsl~i~-~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 37 KGIDMQFE-KNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eeeEEEEc-CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44444321 3468999999999999999988643
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.42 E-value=0.029 Score=62.93 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=25.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+=+|+.+.-. .+.++.|+|||++||||+||.++=+
T Consensus 36 il~~vsl~i~-~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 36 AVNDISMDIE-KHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eeeceEEEEc-CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3344444321 3468999999999999999998643
No 185
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.034 Score=61.78 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-+|+.+.-. .+.++.|+|||++||||+||.++=
T Consensus 19 ~l~~is~~i~-~Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 19 VIKGVDLKIP-QNGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred eeecceEEEc-CCCEEEEECCCCCCHHHHHHHHhc
Confidence 3344444321 346899999999999999998853
No 186
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.029 Score=62.51 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 38 NSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 187
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.41 E-value=0.031 Score=62.28 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.8
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+++.+.- ..+.++.|+|||++||||+||.++
T Consensus 20 ~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~ 52 (257)
T PRK10619 20 VLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 444555542 134689999999999999999885
No 188
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.028 Score=62.24 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999863
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.40 E-value=0.028 Score=63.28 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 27 GRVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 190
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.03 Score=62.13 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.03 Score=62.82 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++=+
T Consensus 34 il~~isl~i~-~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 34 ALFDVDLDIP-EKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEEEEEEc-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3344444421 3468999999999999999998743
No 192
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.36 E-value=0.029 Score=63.69 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 33 Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 33 GSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998853
No 193
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.046 Score=62.59 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+|+.++
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999996
No 194
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.042 Score=64.19 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+|+.+.-. .+.++.|.|||++||||+||.+|
T Consensus 21 ~l~~isl~i~-~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 21 VIDNLNLTIK-QGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred EEeeeEEEEc-CCCEEEEECCCCCcHHHHHHHHH
Confidence 3445555422 34689999999999999999985
No 195
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.34 E-value=0.035 Score=61.90 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 196
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.33 E-value=0.03 Score=63.24 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.+|
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999886
No 197
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.036 Score=61.58 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999864
No 198
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.032 Score=61.85 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 30 GTVNALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999854
No 199
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.037 Score=61.44 Aligned_cols=34 Identities=41% Similarity=0.378 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+=+|+.+.= ..+.++.|+|||++||||+||.++=
T Consensus 21 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 21 ALYDITISI-PKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eeeeeEEEE-CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 334444432 1346899999999999999999973
No 200
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.038 Score=61.11 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998863
No 201
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.28 E-value=0.039 Score=59.09 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=23.6
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
-+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 16 l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 16 FSGLSFTL-AAGEALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred eccceEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444432 134689999999999999999875
No 202
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.27 E-value=0.033 Score=61.78 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 30 NKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999863
No 203
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.033 Score=61.79 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||++|.++=+
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999988643
No 204
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.038 Score=59.28 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhc
Confidence 4689999999999999999985
No 205
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.25 E-value=0.03 Score=66.38 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=24.1
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++.+.- ..+.++.|.|||++||||+||.++=
T Consensus 20 ~~vs~~i-~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 20 DGVDLSV-REGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred EeeEEEE-CCCCEEEEECCCCchHHHHHHHHhc
Confidence 3444432 1346899999999999999999863
No 206
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.032 Score=65.69 Aligned_cols=31 Identities=42% Similarity=0.745 Sum_probs=23.7
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 20 ~~vsl~i~-~Ge~~~l~G~nGsGKSTLL~~ia 50 (369)
T PRK11000 20 KDINLDIH-EGEFVVFVGPSGCGKSTLLRMIA 50 (369)
T ss_pred eeeEEEEc-CCCEEEEECCCCCcHHHHHHHHh
Confidence 44444321 34689999999999999999986
No 207
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.23 E-value=0.035 Score=60.41 Aligned_cols=22 Identities=50% Similarity=0.628 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 208
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.23 E-value=0.033 Score=62.46 Aligned_cols=22 Identities=41% Similarity=0.385 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999985
No 209
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.22 E-value=0.038 Score=61.78 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 210
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.21 E-value=0.035 Score=61.05 Aligned_cols=22 Identities=50% Similarity=0.760 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 211
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.038 Score=61.71 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 36 NSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 212
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.18 E-value=0.033 Score=61.83 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999875
No 213
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.17 E-value=0.035 Score=61.91 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++|||||||.++
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~ 47 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILA 47 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999884
No 214
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.17 E-value=0.039 Score=61.45 Aligned_cols=22 Identities=55% Similarity=0.685 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999986
No 215
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.15 E-value=0.037 Score=59.48 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998853
No 216
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.037 Score=60.69 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~ 47 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIA 47 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 217
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.15 E-value=0.037 Score=59.98 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+..|-|||++||||+|+++.++
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999743
No 218
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.14 E-value=0.037 Score=61.99 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999998853
No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.14 E-value=0.037 Score=60.11 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+++.++
T Consensus 31 G~~~~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999884
No 220
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.13 E-value=0.036 Score=58.03 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
++++|+||+++||||++++++-.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999986554
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.044 Score=61.79 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=24.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+|+.+.-. .+.++.|+|||++|||||||.++
T Consensus 35 ~l~~vs~~i~-~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 35 ALVDVHLKIP-AKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EEeeeeeEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 3445555421 34689999999999999999886
No 222
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.10 E-value=0.036 Score=62.70 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999985
No 223
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.042 Score=62.11 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 25 vl~~vs~~i~-~Ge~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 25 ALDDVNLEVK-KGEFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred eeeeeEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 3344444321 34689999999999999999986
No 224
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.036 Score=62.87 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=24.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 22 ~l~~vs~~i~-~Ge~~~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 22 ALDNVNIEIE-DGEFVGLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred eeeeeEEEEc-CCCEEEEECCCCCcHHHHHHHHh
Confidence 3344444321 34689999999999999999985
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.046 Score=61.68 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=25.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+-+|+.+.=. .+.++.|+|||++||||+||.++
T Consensus 35 ~il~~vs~~i~-~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 35 TVLDQVSMGFP-ARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred EEeeeeEEEEc-CCcEEEEECCCCCCHHHHHHHHh
Confidence 34455555421 34689999999999999999985
No 226
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.04 E-value=0.037 Score=64.85 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=25.1
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. ...++.|.|||++||||+||.+|
T Consensus 20 ~l~~vsl~i~-~Ge~~~llGpsGsGKSTLLr~ia 52 (362)
T TIGR03258 20 VLDDLSLEIE-AGELLALIGKSGCGKTTLLRAIA 52 (362)
T ss_pred EEeeeEEEEC-CCCEEEEECCCCCCHHHHHHHHh
Confidence 4455555421 34689999999999999999996
No 227
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.01 E-value=0.038 Score=58.41 Aligned_cols=20 Identities=40% Similarity=0.693 Sum_probs=18.7
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
.+++|+|||++||||++|.+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l 22 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAAL 22 (186)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.041 Score=61.00 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 29 NSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 229
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.037 Score=63.36 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999986
No 230
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.037 Score=59.78 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=23.1
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|+.+.- .. .++.|+|||++||||+||.++
T Consensus 16 ~vsl~i-~~-e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 16 KIDFDL-NE-EVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred CceEEE-cc-eeEEEECCCCCCHHHHHHHHh
Confidence 455543 24 689999999999999999885
No 231
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.04 Score=62.12 Aligned_cols=22 Identities=50% Similarity=0.558 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999985
No 232
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.06 Score=60.57 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 40 il~~vs~~i~-~Ge~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 40 ALFDISMRIP-KNRVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred EeeeEEEEEc-CCCEEEEECCCCCCHHHHHHHHH
Confidence 3344444321 34689999999999999999986
No 233
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.041 Score=61.60 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 42 Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 42 KQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 234
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.95 E-value=0.04 Score=64.41 Aligned_cols=22 Identities=45% Similarity=0.754 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.+|
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~ia 51 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIA 51 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999985
No 235
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.94 E-value=0.043 Score=61.04 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998854
No 236
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.93 E-value=0.042 Score=61.83 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++=+
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998743
No 237
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.04 Score=62.27 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998853
No 238
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.04 Score=62.47 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 239
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.90 E-value=0.044 Score=61.25 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~ 54 (261)
T PRK14258 33 SKVTAIIGPSGCGKSTFLKCLN 54 (261)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 240
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.041 Score=62.53 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 33 GSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999986
No 241
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.042 Score=62.00 Aligned_cols=22 Identities=50% Similarity=0.643 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~ 51 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFN 51 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 242
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.88 E-value=0.041 Score=64.09 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999885
No 243
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.051 Score=60.50 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 244
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.83 E-value=0.048 Score=61.11 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++|||||||.++
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999886
No 245
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.82 E-value=0.043 Score=64.22 Aligned_cols=24 Identities=54% Similarity=0.717 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||+||.+|=+
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 468999999999999999999543
No 246
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.045 Score=62.08 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=24.7
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 54 il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 54 ALDDVSMDI-PENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred eEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344544432 134689999999999999999986
No 247
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.76 E-value=0.048 Score=58.70 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.+|.|||++||||+|+.++++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~ 45 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999988654
No 248
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.73 E-value=0.047 Score=59.48 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999986
No 249
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.71 E-value=0.044 Score=64.97 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 54 Gei~~LvG~NGsGKSTLLr~I~ 75 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLN 75 (400)
T ss_pred CCEEEEECCCCchHHHHHHHHH
Confidence 4689999999999999999986
No 250
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.046 Score=62.05 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++|||||||.++
T Consensus 32 Ge~v~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 4689999999999999999884
No 251
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.053 Score=61.14 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 28 GEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999884
No 252
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.053 Score=60.18 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999863
No 253
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.67 E-value=0.054 Score=63.41 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 23 Gei~~l~G~nGsGKSTLl~~ia 44 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIA 44 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 254
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=93.67 E-value=0.028 Score=66.37 Aligned_cols=33 Identities=45% Similarity=0.399 Sum_probs=27.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHc----------CCcccCCc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQV----------GADVPAEI 1064 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQi----------G~fVPA~~ 1064 (1122)
|=.-|+|+|+.|||||||+|+= +|| ||||||..
T Consensus 107 rRYGLvGrNG~GKsTLLRaia~----~~v~~f~veqE~~g~~t~~~~ 149 (582)
T KOG0062|consen 107 RRYGLVGRNGIGKSTLLRAIAN----GQVSGFHVEQEVRGDDTEALQ 149 (582)
T ss_pred cccceeCCCCCcHHHHHHHHHh----cCcCccCchhheeccchHHHh
Confidence 4477999999999999999987 443 88888853
No 255
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.66 E-value=0.046 Score=64.34 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.+|
T Consensus 40 Ge~~~LlGpsGsGKSTLLr~Ia 61 (375)
T PRK09452 40 GEFLTLLGPSGCGKTTVLRLIA 61 (375)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4699999999999999999986
No 256
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.052 Score=60.58 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++=+
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 33 NKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999753
No 257
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.051 Score=60.83 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 36 NQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998863
No 258
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.57 E-value=0.05 Score=63.64 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 28 Ge~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999963
No 259
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.56 E-value=0.065 Score=55.98 Aligned_cols=25 Identities=44% Similarity=0.720 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
...|+-||||.++|||||||.++..
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3479999999999999999998654
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.55 E-value=0.047 Score=66.77 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~ 50 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALA 50 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 261
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.051 Score=64.08 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=26.1
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+-+|+.+.-. .+.++.|.|||++||||+||.+|=+
T Consensus 34 ~l~~vsl~i~-~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 34 AVDDVSLTIY-KGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEeeeEEEEc-CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4455555421 3469999999999999999998744
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.48 E-value=0.05 Score=66.91 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 289 Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999863
No 263
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.46 E-value=0.055 Score=61.06 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLID 54 (277)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999886
No 264
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.45 E-value=0.057 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+++|+|||++||||++|.++-.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998754
No 265
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=93.41 E-value=0.064 Score=57.45 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.+|+|||++||||+|..++++
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999888754
No 266
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.058 Score=59.26 Aligned_cols=29 Identities=45% Similarity=0.623 Sum_probs=23.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
...++|+|||+|||||+++.. -|...|..
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l--------~GLl~p~~ 58 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLL--------NGLLKPTS 58 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHH--------cCcCcCCC
Confidence 468999999999999999987 45566655
No 267
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.38 E-value=0.07 Score=59.69 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++|||||||.++
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~ 55 (261)
T PRK14263 34 NEITGFIGPSGCGKSTVLRSLN 55 (261)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999874
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.37 E-value=0.064 Score=65.95 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=26.3
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+-+|+.+.-. .+.++.|.|||++||||+||.++=
T Consensus 19 ~il~~isl~i~-~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 19 KALDNVSLKVR-AGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred EeecceeEEEe-CCeEEEEECCCCCCHHHHHHHHhC
Confidence 34555555432 346899999999999999999853
No 269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.36 E-value=0.057 Score=66.63 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||+||.++-+
T Consensus 26 Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 468999999999999999999755
No 270
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.06 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++-
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998754
No 271
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.059 Score=61.00 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||+||.++=
T Consensus 32 Ge~~~i~G~nGaGKSTLl~~i~G 54 (283)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNG 54 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999853
No 272
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.06 Score=62.96 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 273
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.31 E-value=0.061 Score=60.89 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 63 Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 274
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.28 E-value=0.066 Score=57.69 Aligned_cols=63 Identities=29% Similarity=0.436 Sum_probs=39.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC------Cc---ccC-CccccC-----CcceEeeccCCccccccCCChH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG------AD---VPA-EIFEIS-----PVDRIFVRMGAKDHIMAGQSTF 1090 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG------~f---VPA-~~a~l~-----ivDrIfTRiGa~D~i~~g~STF 1090 (1122)
..++.|-|||++||||+||+|+=++=-. -| -- +|+ +.++.+ =-.+||.++--.+|+.-|..+.
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~ 106 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR 106 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcc
Confidence 4689999999999999999874222000 00 00 111 222222 2357899999999988775554
No 275
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=93.23 E-value=0.074 Score=59.97 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=27.2
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
|---||.++. ..+.||+|||++||||.|..+-.+
T Consensus 14 f~~lditf~e---~~ttIivgpNGsGKTtvLdair~a 47 (440)
T COG3950 14 FLNLDITFGE---SETTIIVGPNGSGKTTVLDAIRNA 47 (440)
T ss_pred hhhceeecCC---CceEEEECCCCCChhhHHHHHHHH
Confidence 5555777764 358999999999999999988554
No 276
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.066 Score=57.58 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=23.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
|=.++.|.- ....++.|-|||++||||+...+
T Consensus 19 ILkgvnL~v-~~GEvhaiMGPNGsGKSTLa~~i 50 (251)
T COG0396 19 ILKGVNLTV-KEGEVHAIMGPNGSGKSTLAYTI 50 (251)
T ss_pred hhcCcceeE-cCCcEEEEECCCCCCHHHHHHHH
Confidence 334444432 13469999999999999998765
No 277
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.22 E-value=0.059 Score=66.16 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++=+
T Consensus 19 ~l~~is~~i~-~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 19 ALSGAALNVY-PGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred EeeeeeEEEc-CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3345555421 3478999999999999999998643
No 278
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.22 E-value=0.066 Score=56.69 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
..++|+|||++||||+||.++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999864
No 279
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.21 E-value=0.062 Score=62.53 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=24.5
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.|+.+.- ..+.++.|.|||++||||+||.++-+
T Consensus 22 ~~vsl~i-~~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 22 NNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred eeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4444432 13468999999999999999999643
No 280
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.12 E-value=0.062 Score=66.41 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~ 48 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILG 48 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.11 E-value=0.062 Score=66.82 Aligned_cols=22 Identities=45% Similarity=0.469 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 33 Ge~~~iiG~NGsGKSTLlk~i~ 54 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMA 54 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 282
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.11 E-value=0.064 Score=63.22 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 50 Gei~~I~G~nGsGKSTLlr~L~ 71 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVN 71 (382)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999985
No 283
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=93.09 E-value=0.058 Score=66.20 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 286 Ge~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 286 GEILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred CcEEEEeCCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 284
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.08 E-value=0.069 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
++++|.|||++||||+++.++-
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999888764
No 285
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.08 E-value=0.059 Score=65.97 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~ 307 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLIT 307 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999985
No 286
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.07 E-value=0.064 Score=66.31 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 345 Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 345 GERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 287
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.06 E-value=0.076 Score=62.20 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=24.2
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+|+.+.- ..+.++.|.|||++||||+||.++=
T Consensus 10 ~~vs~~i-~~Gei~~l~G~sGsGKSTLLr~L~G 41 (363)
T TIGR01186 10 NDADLAI-AKGEIFVIMGLSGSGKSTTVRMLNR 41 (363)
T ss_pred EeeEEEE-cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4444432 1346999999999999999999853
No 288
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=93.06 E-value=0.084 Score=57.23 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.+|+|||++|||+++-.++++
T Consensus 25 ~~~~i~G~NGsGKS~ileAi~~~ 47 (220)
T PF02463_consen 25 GLNVIVGPNGSGKSNILEAIEFV 47 (220)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 289
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=93.04 E-value=0.066 Score=66.57 Aligned_cols=22 Identities=45% Similarity=0.469 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 31 Ge~~~liG~NGsGKSTLl~~i~ 52 (552)
T TIGR03719 31 GAKIGVLGLNGAGKSTLLRIMA 52 (552)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.03 E-value=0.073 Score=59.35 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+||.++=
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999864
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.02 E-value=0.063 Score=66.02 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 20 il~~vs~~i~-~Ge~~~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 20 ALKSVNLTVY-PGEIHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred EeeeeeEEEc-CCcEEEEECCCCCCHHHHHHHHc
Confidence 3345555422 34689999999999999999985
No 292
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.00 E-value=0.074 Score=59.80 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=25.0
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
++.++. .+.+|||||++||||+|..++++.-
T Consensus 16 ~~~~~~----~~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 16 ELEFEP----GVTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred EEecCC----CeEEEECCCCCCHHHHHHHHHHhcc
Confidence 455542 4789999999999999999988663
No 293
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.00 E-value=0.1 Score=54.86 Aligned_cols=72 Identities=25% Similarity=0.203 Sum_probs=46.8
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT 1092 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmv 1092 (1122)
..|=+|+.+.-. .+.+.-|-|||++||||+|-.++=+ +|.++-.+.+=- - .=.+|=..
T Consensus 14 ~~vl~~isl~i~-~g~iTs~IGPNGAGKSTLLS~~sRL---------~~~d~G~i~i~g---------~---~~~~~~s~ 71 (252)
T COG4604 14 KVVLDDVSLDIP-KGGITSIIGPNGAGKSTLLSMMSRL---------LKKDSGEITIDG---------L---ELTSTPSK 71 (252)
T ss_pred EEeeccceeeec-CCceeEEECCCCccHHHHHHHHHHh---------ccccCceEEEee---------e---ecccCChH
Confidence 455566666532 3467889999999999998766433 355555544321 1 12356667
Q ss_pred HHHHHHHHHHhccc
Q 001212 1093 ELSETALMLVRFFC 1106 (1122)
Q Consensus 1093 EM~Eta~IL~~AT~ 1106 (1122)
|+...-.||+++..
T Consensus 72 ~LAk~lSILkQ~N~ 85 (252)
T COG4604 72 ELAKKLSILKQENH 85 (252)
T ss_pred HHHHHHHHHHhhch
Confidence 88888888987753
No 294
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.065 Score=65.88 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 288 Ge~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 288 GEILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred CcEEEEeCCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 295
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.98 E-value=0.077 Score=57.14 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+.++.|+|||++||||++++++-
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=0.78 Score=58.11 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 338 Ge~~~l~G~NGsGKSTLlk~l~ 359 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLA 359 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999884
No 297
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.86 E-value=0.083 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+..|.|||++||||+|+.++.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999766
No 298
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=92.85 E-value=0.068 Score=65.75 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLY 310 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999884
No 299
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.85 E-value=0.077 Score=61.22 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=24.8
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 41 ~L~~vsl~i~-~Ge~~~I~G~nGsGKSTLl~~L~ 73 (320)
T PRK13631 41 ALNNISYTFE-KNKIYFIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred ceeeeEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 4445555421 34689999999999999999884
No 300
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.82 E-value=0.1 Score=64.12 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 278 Ge~~~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 278 GEILGVSGLMGAGRTELMKVLY 299 (501)
T ss_pred CcEEEEecCCCCCHHHHHHHHh
Confidence 4689999999999999999884
No 301
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=92.82 E-value=0.073 Score=65.81 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.1
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 25 l~~isl~i~-~Ge~~~iiG~nGsGKSTLl~~i~ 56 (529)
T PRK15134 25 VNDVSLQIE-AGETLALVGESGSGKSVTALSIL 56 (529)
T ss_pred eeceEEEEe-CCCEEEEECCCCCcHHHHHHHHh
Confidence 344555421 34689999999999999999985
No 302
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.81 E-value=0.082 Score=66.78 Aligned_cols=22 Identities=41% Similarity=0.360 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++|||||||.++
T Consensus 27 Ge~v~LvG~NGsGKSTLLkiL~ 48 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999999999884
No 303
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=92.78 E-value=0.09 Score=57.00 Aligned_cols=24 Identities=38% Similarity=0.804 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|..++++.
T Consensus 24 g~n~i~G~NgsGKS~lleAi~~~l 47 (213)
T cd03277 24 SLNMIIGPNGSGKSSIVCAICLGL 47 (213)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998876
No 304
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.77 E-value=0.086 Score=57.31 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=33.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEe
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIF 1074 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIf 1074 (1122)
++=+|+.+.-. ....+-|-|+|++||||+||.+ .|.+-|-+ -++.+--+|.
T Consensus 41 ~aL~disf~i~-~Ge~vGiiG~NGaGKSTLlkli--------aGi~~Pt~-G~v~v~G~v~ 91 (249)
T COG1134 41 WALKDISFEIY-KGERVGIIGHNGAGKSTLLKLI--------AGIYKPTS-GKVKVTGKVA 91 (249)
T ss_pred EEecCceEEEe-CCCEEEEECCCCCcHHHHHHHH--------hCccCCCC-ceEEEcceEe
Confidence 44455655432 2356889999999999999988 47776754 3444444443
No 305
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.73 E-value=0.091 Score=56.11 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=26.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-|=.+|.+.- ..+.+++|.||.+|||||+||.+-.+
T Consensus 16 ~VLkgi~l~v-~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 16 EVLKGISLSV-EKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEecCcceeE-cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3444555542 23569999999999999999988544
No 306
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.73 E-value=0.089 Score=59.37 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|||||++|||++|..++++.
T Consensus 22 ~~~~i~G~nGsGKS~il~ai~~~~ 45 (276)
T cd03241 22 GLTVLTGETGAGKSILLDALSLLL 45 (276)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999888764
No 307
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=92.69 E-value=0.15 Score=56.99 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=38.6
Q ss_pred CCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC-CcchhcccC
Q 001212 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~~~l~ 150 (1122)
..+-||-+|+..|-+|..||+++|++.+...+...|+|++ |..|.+.|.
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~ 116 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLS 116 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehh
Confidence 4667999999999999999999999999999999999954 667766655
No 308
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.68 E-value=0.088 Score=54.85 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.++.+|||-|++||||+|-.||...
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhc
Confidence 4789999999999999999988654
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=92.60 E-value=0.076 Score=66.01 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=24.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|+|||++|||||||.++
T Consensus 337 ~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~l~ 369 (552)
T TIGR03719 337 LIDDLSFKL-PPGGIVGVIGPNGAGKSTLFRMIT 369 (552)
T ss_pred eeccceEEE-cCCCEEEEECCCCCCHHHHHHHHc
Confidence 334455542 234689999999999999999885
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=92.55 E-value=0.097 Score=64.23 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 16 il~~isl~i~-~Ge~~~liG~nGsGKSTLl~~i~ 48 (500)
T TIGR02633 16 ALDGIDLEVR-PGECVGLCGENGAGKSTLMKILS 48 (500)
T ss_pred eecceEEEEe-CCcEEEEECCCCCCHHHHHHHHh
Confidence 4455555422 34689999999999999999885
No 311
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.55 E-value=0.085 Score=65.09 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 310 Ge~~~l~G~NGsGKSTLl~~l~ 331 (520)
T TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIA 331 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999986
No 312
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.52 E-value=0.083 Score=66.80 Aligned_cols=22 Identities=45% Similarity=0.597 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++|||||||.++
T Consensus 345 Ge~~~l~G~NGsGKSTLlk~l~ 366 (635)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLML 366 (635)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4589999999999999999985
No 313
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.51 E-value=0.099 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.808 Sum_probs=21.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.+|+|||++|||++|..++++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 88999999999999999998864
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=92.50 E-value=0.085 Score=64.91 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 26 il~~vsl~i~-~Ge~~~liG~NGsGKSTLl~~l~ 58 (510)
T PRK15439 26 VLKGIDFTLH-AGEVHALLGGNGAGKSTLMKIIA 58 (510)
T ss_pred eeeeeEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 3345555422 34689999999999999999985
No 315
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.47 E-value=0.11 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|.||+++||||+|+.++
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999964
No 316
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.47 E-value=0.096 Score=59.08 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++.|.|||++||||+||.++=+.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhc
Confidence 4689999999999999999987553
No 317
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=92.46 E-value=0.085 Score=65.20 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=23.7
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 303 ~~isl~i-~~Ge~~~i~G~nGsGKSTLlk~l~ 333 (529)
T PRK15134 303 KNISFTL-RPGETLGLVGESGSGKSTTGLALL 333 (529)
T ss_pred ecceeEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444432 134689999999999999999986
No 318
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.41 E-value=0.66 Score=54.87 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=36.6
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCC------CeEEEEccCCc---chhcccC
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKEC------NKHLVQYDDGE---DELLDLG 150 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~------~~h~v~Yddg~---~e~~~l~ 150 (1122)
||.+|.++|..|..||.++|.+..... ..+.|.|..=+ +|||..+
T Consensus 56 VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~ 109 (450)
T PLN00104 56 VGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLE 109 (450)
T ss_pred cCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHh
Confidence 999999999999999999999988733 46889997544 5676544
No 319
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.40 E-value=0.1 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.2
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+.++.|+|||++||||+++.++
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~ 54 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLE 54 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34688999999999999999876
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.37 E-value=0.098 Score=63.52 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|+|||++|||||||.++
T Consensus 39 IL~nVSfsI-~~GEivgIiGpNGSGKSTLLkiLa 71 (549)
T PRK13545 39 ALNNISFEV-PEGEIVGIIGLNGSGKSTLSNLIA 71 (549)
T ss_pred EEeeeEEEE-eCCCEEEEEcCCCCCHHHHHHHHh
Confidence 334455432 134689999999999999999885
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=92.36 E-value=0.092 Score=65.32 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 350 Ge~~~l~G~NGsGKSTLl~~i~ 371 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMIT 371 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 322
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=92.32 E-value=0.085 Score=64.74 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 279 Ge~~~iiG~NGsGKSTLlk~l~ 300 (501)
T PRK11288 279 GEIVGLFGLVGAGRSELMKLLY 300 (501)
T ss_pred CcEEEEEcCCCCCHHHHHHHHc
Confidence 4689999999999999999885
No 323
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.29 E-value=0.1 Score=60.46 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+=+|+.|.- ..+.++.|.|||++||||++|.++-
T Consensus 22 ~l~~vsl~i-~~Ge~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 22 AVDRVSMTL-TEGEIRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred EEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHc
Confidence 445555542 2346899999999999999999853
No 324
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.24 E-value=0.11 Score=50.36 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
+.++|+||+++||||+++.+|.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 57999999999999999998655443
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.22 E-value=0.093 Score=64.24 Aligned_cols=22 Identities=45% Similarity=0.502 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 24 Ge~~~liG~nGsGKSTLl~~l~ 45 (491)
T PRK10982 24 HSIHALMGENGAGKSTLLKCLF 45 (491)
T ss_pred CcEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999985
No 326
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=92.18 E-value=0.042 Score=59.54 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=0.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.+|+|||++||||+|+.+.++.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 46899999999999999998764
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=92.08 E-value=0.099 Score=64.19 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~ 51 (501)
T PRK11288 30 GQVHALMGENGAGKSTLLKILS 51 (501)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 328
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.04 E-value=0.11 Score=65.59 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++|||||||.++
T Consensus 29 Ge~v~LvG~NGsGKSTLLriia 50 (635)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILN 50 (635)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999874
No 329
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.91 E-value=0.1 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
++.|+||+++||||+++.++-+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999986553
No 330
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=91.91 E-value=0.12 Score=59.92 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=25.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|.|||++||||++|.++
T Consensus 36 ~l~~vsl~i-~~Ge~~~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 36 AVDGVTLRL-YEGETLGVVGESGCGKSTFARAII 68 (331)
T ss_pred EEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHH
Confidence 445555542 234689999999999999999884
No 331
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.83 E-value=0.12 Score=56.15 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=25.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+=+++.|.- ..+.++.|+||.+|||||+|..+|.+
T Consensus 20 ~L~~v~l~i-~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 20 ALKDVNLEI-EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred ecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 334555542 23469999999999999999887643
No 332
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.78 E-value=0.12 Score=56.34 Aligned_cols=21 Identities=33% Similarity=0.291 Sum_probs=18.1
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
++.|+|||++||||+++.++-
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 367999999999999997764
No 333
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.76 E-value=0.15 Score=59.04 Aligned_cols=75 Identities=28% Similarity=0.324 Sum_probs=47.5
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHH--------HHHcCCcccCCccccCCcc---eEeeccCCcc
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------LAQVGADVPAEIFEISPVD---RIFVRMGAKD 1081 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivI--------LAQiG~fVPA~~a~l~ivD---rIfTRiGa~D 1081 (1122)
..+=.|+.|.-. .+.|+-|-||+++||||+||+||=+.- =.+-=.-||++.=.++.|= .+|-+|--.|
T Consensus 18 ~~av~~isl~i~-~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~ 96 (352)
T COG3842 18 FTAVDDISLDIK-KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEE 96 (352)
T ss_pred eeEEecceeeec-CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHH
Confidence 455566777532 346899999999999999999863220 0000012454443333332 3678888889
Q ss_pred ccccCCC
Q 001212 1082 HIMAGQS 1088 (1122)
Q Consensus 1082 ~i~~g~S 1088 (1122)
||.=|..
T Consensus 97 NVafGLk 103 (352)
T COG3842 97 NVAFGLK 103 (352)
T ss_pred Hhhhhhh
Confidence 9887776
No 334
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.74 E-value=0.12 Score=65.30 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+-+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 31 ~l~~is~~v~-~Ge~~~lvG~nGsGKSTLl~~l~ 63 (623)
T PRK10261 31 AVRNLSFSLQ-RGETLAIVGESGSGKSVTALALM 63 (623)
T ss_pred EEEeeEEEEC-CCCEEEEECCCCChHHHHHHHHH
Confidence 4456666432 34689999999999999999985
No 335
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.73 E-value=0.15 Score=64.68 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..+++|.|||++||||+|+.+.++.
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997654
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=91.67 E-value=0.12 Score=65.99 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 535 Ge~i~LvG~NGsGKSTLLk~L~ 556 (718)
T PLN03073 535 DSRIAMVGPNGIGKSTILKLIS 556 (718)
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999885
No 337
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.65 E-value=0.11 Score=63.52 Aligned_cols=22 Identities=5% Similarity=0.179 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 274 Ge~~~l~G~nGsGKSTLl~~l~ 295 (491)
T PRK10982 274 GEILGIAGLVGAKRTDIVETLF 295 (491)
T ss_pred CcEEEEecCCCCCHHHHHHHHc
Confidence 4689999999999999999985
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.60 E-value=0.14 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|+||+++||||+++.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 339
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=91.55 E-value=1.2 Score=55.04 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=23.6
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.+... .=++|+||+++||||++|.+|
T Consensus 411 ~l~~~v~~G---~~llI~G~SG~GKTsLlRaia 440 (604)
T COG4178 411 ELNFEVRPG---ERLLITGESGAGKTSLLRALA 440 (604)
T ss_pred cceeeeCCC---CEEEEECCCCCCHHHHHHHHh
Confidence 345666542 348999999999999999985
No 340
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.55 E-value=0.14 Score=59.37 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=26.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+=+|+.+.-. .+.++.|+|||++||||+|+.++=.
T Consensus 96 ~~L~~is~~I~-~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 96 HVLHDLNLDIK-RNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred eeeeeeEEEEc-CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34455555422 3468999999999999999988643
No 341
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.44 E-value=0.16 Score=50.70 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=18.2
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
++++.||+++||||+.++++
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999874
No 342
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.44 E-value=0.17 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=18.8
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++|+||-++||||+.++++=
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998754
No 343
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=91.41 E-value=0.14 Score=59.14 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=23.4
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.|.- ..+.++.|.|||++||||++|.++
T Consensus 24 ~~vsl~i-~~Ge~~~lvG~sGsGKSTL~~~l~ 54 (326)
T PRK11022 24 DRISYSV-KQGEVVGIVGESGSGKSVSSLAIM 54 (326)
T ss_pred eeeEEEE-CCCCEEEEECCCCChHHHHHHHHH
Confidence 3444432 134689999999999999999874
No 344
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.35 E-value=0.062 Score=58.32 Aligned_cols=67 Identities=24% Similarity=0.395 Sum_probs=46.3
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC-----------------ccccCCc-----
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-----------------IFEISPV----- 1070 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~-----------------~a~l~iv----- 1070 (1122)
--.=||+.+.- ....+..|-|||++||||+..-| .|.|-|-. -|++|++
T Consensus 17 l~Al~~Vsl~v-~~Gei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 17 LTAVNDVSLEV-RPGEIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred EEEEeceeEEE-cCCeEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 34557888764 24579999999999999998876 55555432 2233332
Q ss_pred ceEeeccCCccccccCCC
Q 001212 1071 DRIFVRMGAKDHIMAGQS 1088 (1122)
Q Consensus 1071 DrIfTRiGa~D~i~~g~S 1088 (1122)
-++|..|-.-||++-|..
T Consensus 88 ~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 88 TRLFPGLTVLENVAVGAH 105 (250)
T ss_pred ccccCCCcHHHHHHHHhh
Confidence 278888888888887743
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=91.18 E-value=0.13 Score=65.53 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+..+.|.|||++||||+||.++=
T Consensus 203 Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 203 GRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46799999999999999999963
No 346
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.15 E-value=0.15 Score=64.33 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=24.6
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
=+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 340 l~~vs~~i-~~Ge~~~lvG~nGsGKSTLlk~i~ 371 (623)
T PRK10261 340 VEKVSFDL-WPGETLSLVGESGSGKSTTGRALL 371 (623)
T ss_pred EeeeEeEE-cCCCEEEEECCCCCCHHHHHHHHH
Confidence 34555542 234689999999999999999985
No 347
>PF13173 AAA_14: AAA domain
Probab=91.13 E-value=0.18 Score=49.91 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
.++++|+||=.+||||+|+|++--.+...=-.|+.++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccC
Confidence 4689999999999999999997544422333344443
No 348
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.13 E-value=0.16 Score=58.74 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.|.-. .+.++.|.|||++||||++|.++
T Consensus 30 ~l~~vsl~i~-~Ge~~~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 30 ALDGVSFTLE-RGKTLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred EEeeeEEEEC-CCCEEEEECCCCCcHHHHHHHHH
Confidence 4455555421 34689999999999999999884
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=91.09 E-value=0.15 Score=63.80 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++|||||||.++
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~ 386 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLA 386 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 350
>PRK00064 recF recombination protein F; Reviewed
Probab=91.08 E-value=0.16 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|..++++.
T Consensus 24 ~~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 24 GVNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999999999753
No 351
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.06 E-value=0.65 Score=58.98 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=32.0
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
.|=+|+.+.-. .+.++.|+|+|++||||++|.+ .|.|.|-+
T Consensus 487 ~vL~~isL~I~-~Ge~vaIvG~SGsGKSTL~KLL--------~gly~p~~ 527 (709)
T COG2274 487 PVLEDLSLEIP-PGEKVAIVGRSGSGKSTLLKLL--------LGLYKPQQ 527 (709)
T ss_pred chhhceeEEeC-CCCEEEEECCCCCCHHHHHHHH--------hcCCCCCC
Confidence 45566666532 3468999999999999999987 78888854
No 352
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.93 E-value=0.19 Score=66.97 Aligned_cols=26 Identities=42% Similarity=0.798 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
..+.+|||||++||||+|..+|++.+
T Consensus 30 ~~l~~I~G~tGaGKStildai~~aLy 55 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAICLALY 55 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998864
No 353
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.91 E-value=0.16 Score=59.41 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.5
Q ss_pred ceEEEEEecCCCchHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqv 1047 (1122)
..+++|+|||++||||+|+.+
T Consensus 134 ~glilI~GpTGSGKTTtL~aL 154 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAI 154 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999773
No 354
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.91 E-value=0.21 Score=56.62 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=18.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.|.|||++||||++|.+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999998754
No 355
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.88 E-value=0.17 Score=54.07 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.+++|+||+++||||++++++-.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998654
No 356
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.84 E-value=0.17 Score=54.08 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=17.4
Q ss_pred EEEEEecCCCchHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqv 1047 (1122)
+++|+||+++||||+|+.+
T Consensus 3 lilI~GptGSGKTTll~~l 21 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999874
No 357
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.80 E-value=0.21 Score=54.11 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=25.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..=.||.+.-. ...++.|-||+++||||+||.+.=
T Consensus 18 ~aL~~Vnl~I~-~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 18 QALKDVNLEIN-QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eeeeeEeEEeC-CCcEEEEECCCCCcHHHHHHHHhc
Confidence 34445555432 346999999999999999999854
No 358
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.80 E-value=0.18 Score=59.17 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++|||++|..++++.
T Consensus 24 ~~nvi~G~NGsGKT~lLeAi~~l~ 47 (365)
T TIGR00611 24 GVNVIVGPNGQGKTNLLEAIYYLA 47 (365)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998764
No 359
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.79 E-value=0.26 Score=50.02 Aligned_cols=34 Identities=38% Similarity=0.514 Sum_probs=27.7
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
-||.+... .+..+++-||.++||||+||..-|+-
T Consensus 19 fdi~l~~~-~getlvllgpsgagkssllr~lnlle 52 (242)
T COG4161 19 FDITLDCP-EGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeeeecCC-CCCEEEEECCCCCchHHHHHHHHHHh
Confidence 37777753 45689999999999999999987764
No 360
>PRK08118 topology modulation protein; Reviewed
Probab=90.76 E-value=0.17 Score=52.64 Aligned_cols=21 Identities=48% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
++|+||+++||||+.|+++-.
T Consensus 4 I~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999844
No 361
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=0.88 Score=55.27 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccc
Q 001212 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018 (1122)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPND 1018 (1122)
+++.-+++-...|+......|-.|.+.+|-..-....+.-..+... ..+.+++. ..|-.+.. ..++.+++|
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~-----~~~~~ei~-~~~l~~~y---~~g~~~l~~ 339 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA-----NEPPIEIS-LENLSFRY---PDGKPALSD 339 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc-----cCCCceee-ecceEEec---CCCCcccCC
Confidence 3444445555566666677888888888854322110100011111 12334443 22333322 234489999
Q ss_pred eeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1019 i~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+.+.-. ..+...|.||+++||||++..+
T Consensus 340 l~~t~~-~g~~talvG~SGaGKSTLl~lL 367 (559)
T COG4988 340 LNLTIK-AGQLTALVGASGAGKSTLLNLL 367 (559)
T ss_pred ceeEec-CCcEEEEECCCCCCHHHHHHHH
Confidence 998743 4578999999999999999865
No 362
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.64 E-value=0.2 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++.|+||+++||||+++.++-.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999987754
No 363
>PRK07261 topology modulation protein; Provisional
Probab=90.62 E-value=0.18 Score=52.67 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=17.7
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|+||+++||||+.++++
T Consensus 3 i~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999975
No 364
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=90.62 E-value=0.18 Score=53.95 Aligned_cols=26 Identities=42% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
++.|||+|++||||+++.. +..|++|
T Consensus 1 ~i~itG~~gsGKst~~~~l------~~~g~~~ 26 (196)
T PRK14732 1 LIGITGMIGGGKSTALKIL------EELGAFG 26 (196)
T ss_pred CEEEECCCCccHHHHHHHH------HHCCCEE
Confidence 3689999999999998854 3557664
No 365
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.61 E-value=0.24 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.1
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++++|+||.++||||+++++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999998763
No 366
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.46 E-value=0.18 Score=67.58 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
.+.+|||||++||||+|-.||++.+
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~ 51 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALY 51 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998763
No 367
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.43 E-value=0.22 Score=54.39 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=27.8
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+=||+.|.- ..+.|++|-||.++||||+||+|-
T Consensus 14 ~~av~~v~l~I-~~gef~vliGpSGsGKTTtLkMIN 48 (309)
T COG1125 14 KKAVDDVNLTI-EEGEFLVLIGPSGSGKTTTLKMIN 48 (309)
T ss_pred ceeeeeeeEEe-cCCeEEEEECCCCCcHHHHHHHHh
Confidence 35556777764 245799999999999999999974
No 368
>PRK14079 recF recombination protein F; Provisional
Probab=90.37 E-value=0.22 Score=58.16 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCccc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVP 1061 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVP 1061 (1122)
.+.+|+|||++|||++|..+.++. .|+|=+
T Consensus 24 g~nvi~G~NGsGKT~lLeAI~~~~----~gs~r~ 53 (349)
T PRK14079 24 GVTAVVGENAAGKTNLLEAIYLAL----TGELPN 53 (349)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh----cCCCCC
Confidence 489999999999999999997653 355544
No 369
>PRK13409 putative ATPase RIL; Provisional
Probab=90.24 E-value=0.2 Score=62.70 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+.++.|.|||++||||+||.++
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~ 120 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILS 120 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999999884
No 370
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.20 E-value=0.18 Score=56.76 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
++.|+|||++||||++|.++
T Consensus 1 iigI~G~sGsGKSTl~~~L~ 20 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLT 20 (273)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999886
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.20 E-value=0.27 Score=53.75 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=17.2
Q ss_pred ceEEEEEecCCCchHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLR 1045 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LR 1045 (1122)
+.++.|+|||++||||+++
T Consensus 21 Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 21 NKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4699999999999999974
No 372
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.09 E-value=0.23 Score=43.57 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.|+|+.++||||+++.++-..
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999887554
No 373
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.09 E-value=0.22 Score=55.54 Aligned_cols=21 Identities=48% Similarity=0.760 Sum_probs=19.2
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|+|||++||||++|.++
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 489999999999999999874
No 374
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.01 E-value=0.25 Score=54.06 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.|+-|-||.++||||+||.||
T Consensus 29 GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4699999999999999999985
No 375
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=89.97 E-value=1 Score=55.87 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=25.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.+-+|+.+.-. .+..+.|+|||++||||++|.+
T Consensus 332 ~~l~~~~~~i~-~G~~~~ivG~sGsGKSTL~~ll 364 (544)
T TIGR01842 332 PTLRGISFRLQ-AGEALAIIGPSGSGKSTLARLI 364 (544)
T ss_pred cccccceEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 45566666532 3468999999999999999987
No 376
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=89.83 E-value=0.26 Score=55.89 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
.++++|||++++||||+++.+ ++.|.++
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l------~~~g~~~ 33 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL------EDLGYYC 33 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH------HHcCCeE
Confidence 368999999999999999987 4677765
No 377
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.79 E-value=0.23 Score=61.80 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
.+.+|+|||++||||+|..|+.+..
T Consensus 28 g~~~i~G~NG~GKStll~aI~~~l~ 52 (562)
T PHA02562 28 KKTLITGKNGAGKSTMLEALTFALF 52 (562)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4899999999999999999987664
No 378
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=89.77 E-value=0.23 Score=63.12 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=24.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|+|||++||||++|.++
T Consensus 467 il~~isl~i-~~Ge~~~IvG~nGsGKSTLl~lL~ 499 (659)
T TIGR00954 467 LIESLSFEV-PSGNHLLICGPNGCGKSSLFRILG 499 (659)
T ss_pred eeecceEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 334444432 134689999999999999999874
No 379
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=89.73 E-value=0.15 Score=59.01 Aligned_cols=17 Identities=53% Similarity=0.774 Sum_probs=15.7
Q ss_pred EEecCCCchHHHHHHHH
Q 001212 1032 LTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1032 ITGPNMgGKST~LRqva 1048 (1122)
|.|||++||||+||.++
T Consensus 1 l~G~nGsGKSTLl~~ia 17 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLA 17 (325)
T ss_pred CcCCCCCCHHHHHHHHH
Confidence 57999999999999985
No 380
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=89.60 E-value=0.25 Score=57.24 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=23.9
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
=+|+.+.-. .+.++.|.|+|++||||++|.++
T Consensus 32 l~~vsl~i~-~Ge~~~ivG~sGsGKSTL~~~l~ 63 (330)
T PRK09473 32 VNDLNFSLR-AGETLGIVGESGSGKSQTAFALM 63 (330)
T ss_pred EeeeEEEEc-CCCEEEEECCCCchHHHHHHHHH
Confidence 344555421 34689999999999999999884
No 381
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=89.59 E-value=0.23 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+++|+||.++||||+.++++-.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999997654
No 382
>PLN03211 ABC transporter G-25; Provisional
Probab=89.59 E-value=0.22 Score=63.02 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 94 Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 94 GEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 383
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.53 E-value=0.21 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.2
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
++|+||+++||||+.+.++-.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999988744
No 384
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.52 E-value=0.22 Score=67.47 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+||||+||||+|..|+++.
T Consensus 24 ~~~~i~G~NGsGKS~ll~ai~~~l 47 (1179)
T TIGR02168 24 GITGIVGPNGCGKSNIVDAIRWVL 47 (1179)
T ss_pred CcEEEECCCCCChhHHHHHHHHHH
Confidence 489999999999999999988874
No 385
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.49 E-value=0.43 Score=53.39 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=27.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
.++..|||+.+|||||+++.+.+-.+.++++-
T Consensus 21 g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999987777777664
No 386
>PRK13695 putative NTPase; Provisional
Probab=89.46 E-value=0.25 Score=51.51 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|||+|++||||+++.++
T Consensus 3 i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999864
No 387
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.45 E-value=0.32 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.+++|+|++++||||+.+.++--
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988644
No 388
>PRK06762 hypothetical protein; Provisional
Probab=89.44 E-value=0.29 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+++|||+.++||||+.+.++-.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988744
No 389
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=89.37 E-value=0.29 Score=52.51 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.8
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
.+.|+|||++||||+++.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~ 22 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALT 22 (199)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999754
No 390
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.36 E-value=0.25 Score=53.65 Aligned_cols=48 Identities=25% Similarity=0.233 Sum_probs=36.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcc
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVD 1071 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivD 1071 (1122)
-+-||+++.- ...+++-+-|||++||||.+|+|. | +.++.+-+|++..
T Consensus 16 ~av~~isf~v-~~G~i~GllG~NGAGKTTtfRmIL--------g-lle~~~G~I~~~g 63 (300)
T COG4152 16 KAVDNISFEV-PPGEIFGLLGPNGAGKTTTFRMIL--------G-LLEPTEGEITWNG 63 (300)
T ss_pred eeecceeeee-cCCeEEEeecCCCCCccchHHHHh--------c-cCCccCceEEEcC
Confidence 4557788864 346899999999999999999983 3 4566666666665
No 391
>PRK02224 chromosome segregation protein; Provisional
Probab=89.27 E-value=0.28 Score=64.58 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|..|+.+.
T Consensus 24 g~~~i~G~Ng~GKStil~ai~~~l 47 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACFFAL 47 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999988754
No 392
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.16 E-value=0.23 Score=60.07 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=31.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHH----cCCcccCCccccCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQ----VGADVPAEIFEISPVD 1071 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQ----iG~fVPA~~a~l~ivD 1071 (1122)
.++++.|||++||||++..+|-...+-+ +| +|+++..+++.++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~-LI~~Dt~RigA~E 303 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA-LLTTDSYRIGGHE 303 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE-EEeCCccchhHHH
Confidence 5899999999999999999997655443 32 6777765444433
No 393
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.10 E-value=0.29 Score=60.93 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|||||++|||++|..++++.
T Consensus 23 g~~vitG~nGaGKS~ll~al~~~~ 46 (563)
T TIGR00634 23 GLTVLTGETGAGKSMIIDALSLLG 46 (563)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998864
No 394
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.09 E-value=0.3 Score=53.87 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=22.2
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
|+.+.- ..+.+..+-|||++||||+||+.
T Consensus 42 disf~I-P~G~ivgflGaNGAGKSTtLKmL 70 (325)
T COG4586 42 DISFEI-PKGEIVGFLGANGAGKSTTLKML 70 (325)
T ss_pred eeeeec-CCCcEEEEEcCCCCcchhhHHHH
Confidence 444432 23468899999999999999986
No 395
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=89.08 E-value=0.27 Score=59.16 Aligned_cols=82 Identities=21% Similarity=0.195 Sum_probs=53.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHH-------HcC-----CcccCC-cccc-CCcceEeeccCCccccccCCChHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA-------QVG-----ADVPAE-IFEI-SPVDRIFVRMGAKDHIMAGQSTFLT 1092 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILA-------QiG-----~fVPA~-~a~l-~ivDrIfTRiGa~D~i~~g~STFmv 1092 (1122)
+.-++|||||++|||++||..|=+==+- --| .|||-. ++.+ ++-|+|.-=.++.|....+.|+
T Consensus 461 g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d--- 537 (659)
T KOG0060|consen 461 GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASD--- 537 (659)
T ss_pred CCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCH---
Confidence 4569999999999999999986432110 011 366665 3444 4667887777788877777665
Q ss_pred HHHHHHHHHHhcc-ccHHHHHH
Q 001212 1093 ELSETALMLVRFF-CSLNQLCR 1113 (1122)
Q Consensus 1093 EM~Eta~IL~~AT-~sl~~l~~ 1113 (1122)
.++-.||.++- .++++.++
T Consensus 538 --~~i~r~Le~v~L~hl~~r~g 557 (659)
T KOG0060|consen 538 --EDILRILENVQLGHLLEREG 557 (659)
T ss_pred --HHHHHHHHHhhhhhHHHHhC
Confidence 34555566555 45555443
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.07 E-value=0.24 Score=58.88 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHH---cCCcccCCccccCCcce
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDR 1072 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQ---iG~fVPA~~a~l~ivDr 1072 (1122)
.++.|.|||++||||+|+-+|-..++-+ -+.+|.++..+++.++.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQ 239 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQ 239 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHH
Confidence 5899999999999999998886554432 23455666666555544
No 397
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.06 E-value=1.3 Score=55.58 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=25.6
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+-+|+.+.-. .+..+.|+|||++||||+++.++
T Consensus 349 ~~l~~i~~~i~-~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 349 QGVFDVSFEAK-AGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred ccccceeEEEc-CCCEEEEECCCCCCHHHHHHHHc
Confidence 34566666422 34689999999999999999873
No 398
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=89.06 E-value=0.16 Score=53.25 Aligned_cols=30 Identities=33% Similarity=0.587 Sum_probs=23.1
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
||+.+.-. ...+-+|-|||++||||+|-.|
T Consensus 22 n~ls~~v~-~Gelr~lIGpNGAGKTT~mD~I 51 (249)
T COG4674 22 NDLSFSVD-PGELRVLIGPNGAGKTTLMDVI 51 (249)
T ss_pred eeeEEEec-CCeEEEEECCCCCCceeeeeee
Confidence 66666432 3468889999999999999766
No 399
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.05 E-value=0.5 Score=48.64 Aligned_cols=39 Identities=31% Similarity=0.550 Sum_probs=27.8
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
=+++.+.-+ .+.+++|-||.++||||+||+. .|-|-|.+
T Consensus 27 ~~~vslsV~-aGECvvL~G~SG~GKStllr~L--------YaNY~~d~ 65 (235)
T COG4778 27 LRNVSLSVN-AGECVVLHGPSGSGKSTLLRSL--------YANYLPDE 65 (235)
T ss_pred eeceeEEec-CccEEEeeCCCCCcHHHHHHHH--------HhccCCCC
Confidence 344555422 2468999999999999999987 45565554
No 400
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.04 E-value=0.33 Score=51.81 Aligned_cols=33 Identities=36% Similarity=0.411 Sum_probs=24.8
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.||.|.- ....+.-|-||.++|||||||.+--+
T Consensus 24 ~~i~l~i-~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 24 KDINLDI-PKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred ccCceec-cCCceEEEECCCCcCHHHHHHHHHhh
Confidence 4555553 24578899999999999999986543
No 401
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.01 E-value=0.32 Score=49.10 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+++|+|||++||||++++++-..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999997765
No 402
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=88.93 E-value=0.33 Score=49.98 Aligned_cols=20 Identities=40% Similarity=0.492 Sum_probs=18.0
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
+++|+|++++||||++|.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~ 21 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHIL 21 (158)
T ss_pred EEEEEECCCCCHHHHHHHHH
Confidence 68999999999999999744
No 403
>PRK10869 recombination and repair protein; Provisional
Probab=88.53 E-value=0.33 Score=60.21 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|||||++|||++|-.++++.
T Consensus 23 glnvitGetGaGKS~ildAi~~ll 46 (553)
T PRK10869 23 GMTVITGETGAGKSIAIDALGLCL 46 (553)
T ss_pred CcEEEECCCCCChHHHHHHHHHHh
Confidence 589999999999999999999874
No 404
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=88.51 E-value=0.31 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.7
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|||++||||+++++.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHh
Confidence 348999999999999999885
No 405
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=88.30 E-value=0.36 Score=50.92 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=23.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
+++|.||+++||||+++.++-. |.+.|--
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~--l~~~g~~ 30 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER--LEARGYE 30 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCe
Confidence 6899999999999999998655 3455543
No 406
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.19 E-value=0.36 Score=55.41 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.2
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
..++|+|||++||||+|+.+
T Consensus 145 ~~ili~G~tGsGKTTll~al 164 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSL 164 (308)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999875
No 407
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=88.16 E-value=0.34 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=22.7
Q ss_pred ccCCccccceeEEeccCCCeEEeEEEE
Q 001212 100 SYGEDVLRKRIRVYWPLDKAWYEGCVK 126 (1122)
Q Consensus 100 ~~~~~~vg~rv~v~wp~d~~~y~g~v~ 126 (1122)
-+|..+-||.|-|=|..++.=|+++-.
T Consensus 178 ~N~~~i~gR~VAVDWAV~Kd~ye~ta~ 204 (678)
T KOG0127|consen 178 FNGNKIDGRPVAVDWAVDKDTYEDTAH 204 (678)
T ss_pred ccCceecCceeEEeeecccccccccch
Confidence 347888999999999999998888653
No 408
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.13 E-value=0.34 Score=48.64 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=18.2
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++|.||.++||||+++.++-
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999998753
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=88.11 E-value=0.37 Score=57.64 Aligned_cols=28 Identities=46% Similarity=0.672 Sum_probs=25.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
+=+.|-|||+|||||+||.| -||.+|+-
T Consensus 102 ~rygLiG~nG~Gkst~L~~i--------~~~e~P~p 129 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAI--------AGREVPIP 129 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHH--------hcCCCCCC
Confidence 45899999999999999998 59999975
No 410
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=88.08 E-value=0.32 Score=58.15 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=18.0
Q ss_pred ceEEEEEecCCCchHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLR 1045 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LR 1045 (1122)
+.++.|.||+++||||+||
T Consensus 32 GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 32 SSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCEEEEECCCCCCHHHHHh
Confidence 4799999999999999999
No 411
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.04 E-value=0.38 Score=63.46 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=24.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQV 1056 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQi 1056 (1122)
..+.+|+||||+||||+|=.|+++.+=-..
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~ 54 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTP 54 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999887754333
No 412
>PRK06761 hypothetical protein; Provisional
Probab=88.01 E-value=0.38 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
++++|+||+++||||++++++--
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999854
No 413
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=87.84 E-value=0.36 Score=59.08 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
..+++|||||.++||||.+|.+| -.+|.-|
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La-----~elg~~v 73 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLA-----KELGFEV 73 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHH-----HHhCCee
Confidence 35799999999999999998765 4456643
No 414
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=87.78 E-value=2.3 Score=54.48 Aligned_cols=42 Identities=31% Similarity=0.627 Sum_probs=31.7
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
..|=+|+.+.-. .+..+.|+|||++||||++|.+ +|.|-|-+
T Consensus 466 ~~vL~~isl~i~-~Ge~vaIvG~sGsGKSTLlklL--------~gl~~p~~ 507 (686)
T TIGR03797 466 PLILDDVSLQIE-PGEFVAIVGPSGSGKSTLLRLL--------LGFETPES 507 (686)
T ss_pred ccceeeeEEEEC-CCCEEEEECCCCCCHHHHHHHH--------hCCCCCCC
Confidence 356666666532 3468999999999999999988 67777754
No 415
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=87.72 E-value=0.41 Score=59.75 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=25.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+++.+.- ..+..+.|+|||++||||+++.++
T Consensus 329 ~~l~~i~~~i-~~G~~~~ivG~sGsGKSTLl~ll~ 362 (569)
T PRK10789 329 PALENVNFTL-KPGQMLGICGPTGSGKSTLLSLIQ 362 (569)
T ss_pred ccccCeeEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445555542 234689999999999999999884
No 416
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=87.69 E-value=2.1 Score=53.54 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.+=+|+.+.-. .+..+.|+|||++||||++|.+
T Consensus 354 ~iL~~inl~i~-~Ge~i~IvG~sGsGKSTLlklL 386 (576)
T TIGR02204 354 PALDGLNLTVR-PGETVALVGPSGAGKSTLFQLL 386 (576)
T ss_pred ccccceeEEec-CCCEEEEECCCCCCHHHHHHHH
Confidence 34445555421 3467999999999999999988
No 417
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=87.61 E-value=0.44 Score=50.98 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=18.2
Q ss_pred CceEEEEEecCCCchHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.+.+++|-|||++||||+++++
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~ 35 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQL 35 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHh
Confidence 5678999999999999999976
No 418
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.60 E-value=0.46 Score=46.53 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
.+.++|+||.+.||||+++.++-...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999987664
No 419
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.59 E-value=0.43 Score=46.58 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=19.0
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
++|+||.+.||||++|.+|-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999999998765
No 420
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.54 E-value=0.52 Score=54.31 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1122)
+.+++|+|||++||||+++.+|.. +++-|
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g 142 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK--YKAQG 142 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHhcC
Confidence 468899999999999999998865 34555
No 421
>PF05729 NACHT: NACHT domain
Probab=87.49 E-value=0.43 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
|+++|+|+-++||||+|+.++...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 689999999999999999776543
No 422
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=87.47 E-value=0.44 Score=50.95 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=25.9
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
-+=|.+.|.- ....|+.|-|.|++||||++..++
T Consensus 20 ~~l~~~sL~I-~~g~FvtViGsNGAGKSTlln~ia 53 (263)
T COG1101 20 RALNGLSLEI-AEGDFVTVIGSNGAGKSTLLNAIA 53 (263)
T ss_pred HHHhcCceee-cCCceEEEEcCCCccHHHHHHHhh
Confidence 4445555543 245799999999999999999885
No 423
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=87.43 E-value=0.46 Score=60.31 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..++.|+|||++||||+||.++-+
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~Gl 57 (648)
T PRK10535 34 GEMVAIVGASGSGKSTLMNILGCL 57 (648)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998633
No 424
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=87.31 E-value=0.32 Score=58.61 Aligned_cols=59 Identities=31% Similarity=0.307 Sum_probs=42.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTEL 1094 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM 1094 (1122)
..++-|.|-|++||||+||-+ .|.|-|- +-+|.+=.+-.+.-+..|....|..+.+.|+
T Consensus 34 GEV~aL~GeNGAGKSTLmKiL--------sGv~~p~-~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl 92 (500)
T COG1129 34 GEVHALLGENGAGKSTLMKIL--------SGVYPPD-SGEILIDGKPVAFSSPRDALAAGIATVHQEL 92 (500)
T ss_pred ceEEEEecCCCCCHHHHHHHH--------hCcccCC-CceEEECCEEccCCCHHHHHhCCcEEEeech
Confidence 479999999999999999987 6887554 3455555555555566666666666665554
No 425
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=87.22 E-value=0.49 Score=50.05 Aligned_cols=19 Identities=47% Similarity=0.628 Sum_probs=16.8
Q ss_pred EEEEEecCCCchHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqv 1047 (1122)
=+++-|.|++||||+||-.
T Consensus 42 RcLlVGaNGaGKtTlLKiL 60 (291)
T KOG2355|consen 42 RCLLVGANGAGKTTLLKIL 60 (291)
T ss_pred eEEEEecCCCchhhhHHHh
Confidence 3788999999999999965
No 426
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=87.21 E-value=0.51 Score=56.06 Aligned_cols=42 Identities=31% Similarity=0.447 Sum_probs=32.0
Q ss_pred ceeccc-eeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1013 EFVPND-ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1013 ~fVPND-i~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
.++.|| +.|.- ....++.|-|-|++||||||+.+ .|.|.|=+
T Consensus 16 ~~~And~V~l~v-~~GeIHaLLGENGAGKSTLm~iL--------~G~~~P~~ 58 (501)
T COG3845 16 GVVANDDVSLSV-KKGEIHALLGENGAGKSTLMKIL--------FGLYQPDS 58 (501)
T ss_pred CEEecCceeeee-cCCcEEEEeccCCCCHHHHHHHH--------hCcccCCc
Confidence 466665 45542 23469999999999999999987 79888743
No 427
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.14 E-value=0.61 Score=50.74 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=28.3
Q ss_pred CceeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1012 ~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+..|=+++.|.- ..+.++.|-||.++||||+||+|
T Consensus 20 ~~~Ild~v~l~V-~~Gei~~iiGgSGsGKStlLr~I 54 (263)
T COG1127 20 DRVILDGVDLDV-PRGEILAILGGSGSGKSTLLRLI 54 (263)
T ss_pred CEEEecCceeee-cCCcEEEEECCCCcCHHHHHHHH
Confidence 356667777763 24579999999999999999998
No 428
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=87.02 E-value=0.42 Score=58.63 Aligned_cols=21 Identities=48% Similarity=0.520 Sum_probs=18.4
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-+-|.|+|++|||||||.++
T Consensus 30 ~riGLvG~NGaGKSTLLkila 50 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILA 50 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHc
Confidence 457899999999999999873
No 429
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=86.81 E-value=0.52 Score=58.85 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=25.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|-+|+.+.-. .+..+.|+|||++||||++|.++
T Consensus 346 ~il~~inl~i~-~G~~v~IvG~sGsGKSTLl~lL~ 379 (571)
T TIGR02203 346 PALDSISLVIE-PGETVALVGRSGSGKSTLVNLIP 379 (571)
T ss_pred ccccCeeEEec-CCCEEEEECCCCCCHHHHHHHHH
Confidence 45566666432 34689999999999999999873
No 430
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.79 E-value=0.57 Score=64.20 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+||||+||||++..++.+.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al 52 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYIC 52 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997655
No 431
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=86.76 E-value=0.51 Score=59.06 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=25.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.|=+|+.+.=. .+..+.|+|||++||||++|.+
T Consensus 357 ~il~~i~l~i~-~G~~~aIvG~sGsGKSTLl~ll 389 (582)
T PRK11176 357 PALRNINFKIP-AGKTVALVGRSGSGKSTIANLL 389 (582)
T ss_pred ccccCceEEeC-CCCEEEEECCCCCCHHHHHHHH
Confidence 45566666432 3467999999999999999988
No 432
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.70 E-value=0.55 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.++.|||+|++||||+.+.++-..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999887644
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=86.60 E-value=0.55 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+++++|+||-++||||+.|.++-.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988644
No 434
>PLN03140 ABC transporter G family member; Provisional
Probab=86.59 E-value=0.46 Score=65.33 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++++|.|||++||||+||.++=
T Consensus 191 Ge~~~llGpnGSGKSTLLk~LaG 213 (1470)
T PLN03140 191 SRMTLLLGPPSSGKTTLLLALAG 213 (1470)
T ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Confidence 47999999999999999998753
No 435
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.56 E-value=1 Score=58.77 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=39.1
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+.|.+++.++..+ -.-|+.+.. +.++.|||+|++||||+++.+-.-..-++++.
T Consensus 611 ~~l~l~~~~~~~L----------k~vsl~Ip~---Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~ 664 (924)
T TIGR00630 611 KFLTLKGARENNL----------KNITVSIPL---GLFTCITGVSGSGKSTLINDTLYPALARRLNG 664 (924)
T ss_pred ceEEEEeCccCCc----------CceEEEEeC---CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3678888765432 233555542 36899999999999999999987777666654
No 436
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=86.56 E-value=0.55 Score=49.07 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++|.||+++||||+.|.++-.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999998753
No 437
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=86.50 E-value=0.44 Score=65.45 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|.|||++||||+||.++-
T Consensus 87 Ge~~aIlG~nGsGKSTLLk~LaG 109 (1394)
T TIGR00956 87 GELTVVLGRPGSGCSTLLKTIAS 109 (1394)
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999998754
No 438
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=86.50 E-value=0.51 Score=58.37 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=24.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.+=+|+.+.-. .+..+.|+|||++||||++|.+
T Consensus 336 ~il~~i~l~i~-~G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 336 PALRPVSFTVP-PGERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred ccccceeEEEC-CCCEEEEECCCCCCHHHHHHHH
Confidence 34455555422 3468999999999999999988
No 439
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=86.46 E-value=0.54 Score=48.55 Aligned_cols=21 Identities=48% Similarity=0.740 Sum_probs=17.3
Q ss_pred ceEEEEEecCCCchHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqv 1047 (1122)
+-++-+.|||++||||+|-..
T Consensus 25 Ge~~HliGPNGaGKSTLLA~l 45 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARM 45 (248)
T ss_pred ceEEEEECCCCccHHHHHHHH
Confidence 357889999999999987544
No 440
>PTZ00202 tuzin; Provisional
Probab=86.44 E-value=0.53 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+++.+||||+++||||++|...
T Consensus 286 privvLtG~~G~GKTTLlR~~~ 307 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAV 307 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999876
No 441
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=86.44 E-value=2.5 Score=49.10 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=45.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccc---------------cCCcceEeeccCCccccccCCC---
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE---------------ISPVDRIFVRMGAKDHIMAGQS--- 1088 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~---------------l~ivDrIfTRiGa~D~i~~g~S--- 1088 (1122)
+.++-|+|-|++||||+++-. .|.|-|-..-. =++|..||+..---|.+..+.-
T Consensus 349 GelvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as 420 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS 420 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCC
Confidence 468999999999999998654 78887754211 1345567777666666665554
Q ss_pred ----hHHHHHHHHHHHH
Q 001212 1089 ----TFLTELSETALML 1101 (1122)
Q Consensus 1089 ----TFmvEM~Eta~IL 1101 (1122)
+|..+-.|+++-.
T Consensus 421 ~q~i~~~LqrLel~~kt 437 (546)
T COG4615 421 PQLIEKWLQRLELAHKT 437 (546)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 5666666665543
No 442
>COG4637 Predicted ATPase [General function prediction only]
Probab=86.38 E-value=0.69 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+++||+|.|++|||++.+...++.
T Consensus 22 ~~~nviIGANGaGKSn~~~~l~~l~ 46 (373)
T COG4637 22 RRVNVIIGANGAGKSNFYDALRLLA 46 (373)
T ss_pred cceEEEEcCCCCchhHHHHHHHHHH
Confidence 3799999999999999988777654
No 443
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.36 E-value=0.5 Score=55.09 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=18.7
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
-+++|+||+++||||+|+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998753
No 444
>PRK08233 hypothetical protein; Provisional
Probab=86.28 E-value=0.6 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++.|+|+.++||||+.++++-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5889999999999999998874
No 445
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=86.27 E-value=0.5 Score=59.59 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=24.8
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
|=+|+.+.- ..+.++.|.|||++||||+|+.++-
T Consensus 40 iL~~vs~~i-~~Ge~~aI~G~sGsGKSTLL~~L~g 73 (617)
T TIGR00955 40 LLKNVSGVA-KPGELLAVMGSSGAGKTTLMNALAF 73 (617)
T ss_pred cccCCEEEE-eCCeEEEEECCCCCCHHHHHHHHhC
Confidence 334444432 2347999999999999999998864
No 446
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=86.17 E-value=1.5 Score=36.75 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=34.8
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCCC--eEEEEccCCc---chhccc
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKECN--KHLVQYDDGE---DELLDL 149 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~--~h~v~Yddg~---~e~~~l 149 (1122)
||.+|.+.| .+..||+++|.+-....+ .+.|.|.+=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 999999999999988664 7889998655 555543
No 447
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=86.14 E-value=0.62 Score=58.48 Aligned_cols=40 Identities=30% Similarity=0.371 Sum_probs=30.1
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
|=+|+.+.-. .+..+.|+|||++||||++|.+ .|.|-|.+
T Consensus 356 il~~i~l~i~-~Ge~iaIvG~SGsGKSTLl~lL--------~gl~~p~~ 395 (592)
T PRK10790 356 VLQNINLSVP-SRGFVALVGHTGSGKSTLASLL--------MGYYPLTE 395 (592)
T ss_pred eeeceeEEEc-CCCEEEEECCCCCCHHHHHHHH--------hcccCCCC
Confidence 4455666432 3468999999999999999987 67777764
No 448
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=86.12 E-value=0.65 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+++|.|+.++|||||+|.++-.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999988754
No 449
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=86.11 E-value=0.79 Score=48.24 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=17.6
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|-|||++||||+++++.
T Consensus 4 i~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999885
No 450
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=86.08 E-value=0.56 Score=51.01 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=18.7
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
++.|+||+++||||++|.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVA 23 (217)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999887
No 451
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.07 E-value=0.63 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.+++|+|++++||||+.|.++-..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987643
No 452
>PRK13949 shikimate kinase; Provisional
Probab=86.04 E-value=0.55 Score=48.98 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=18.2
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|.||+++||||+.|.+|=
T Consensus 4 I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998763
No 453
>PRK04296 thymidine kinase; Provisional
Probab=85.82 E-value=0.8 Score=48.66 Aligned_cols=50 Identities=24% Similarity=0.185 Sum_probs=32.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc--cCCccccCCcceEeeccC
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMG 1078 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~ivDrIfTRiG 1078 (1122)
.+.+||||-++||||++.+.+.-..-+.-=++| |+-.-+-+ ..+|.+|+|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg 54 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIG 54 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCC
Confidence 689999999999999999886655443211222 33111222 446788887
No 454
>COG1106 Predicted ATPases [General function prediction only]
Probab=85.81 E-value=0.67 Score=54.02 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCccc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVP 1061 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVP 1061 (1122)
.++.+|+|+|++|||.+|.++.+.+-+-.-||.=|
T Consensus 22 ~~in~I~G~N~sGKSNlleAl~f~~~~~~~~~~~~ 56 (371)
T COG1106 22 GKINIIYGANGAGKSNLLEALYFLKGLISPGSESP 56 (371)
T ss_pred cceEEEEcCCCCchhHHHHHHHHHHHhccCCccCC
Confidence 37999999999999999999999999988888874
No 455
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=85.70 E-value=1.3 Score=52.26 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=49.6
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHH---------------------HHHHHHHHHHcCCcccCCcc--ccCC
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLR---------------------QVCLAVILAQVGADVPAEIF--EISP 1069 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LR---------------------qvaLivILAQiG~fVPA~~a--~l~i 1069 (1122)
..|=-|+.+.- ..+..+.|-||.+|||||.|| ++-+..+=.|||. ||-+.. .=+|
T Consensus 551 k~vl~disF~v-~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV-VPQDtvLFNdTI 628 (790)
T KOG0056|consen 551 KPVLSDISFTV-QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV-VPQDTVLFNDTI 628 (790)
T ss_pred CceeecceEEe-cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc-ccCcceeeccee
Confidence 34445555543 234789999999999999976 4556667778885 788864 3477
Q ss_pred cceE-eeccCCccc
Q 001212 1070 VDRI-FVRMGAKDH 1082 (1122)
Q Consensus 1070 vDrI-fTRiGa~D~ 1082 (1122)
++.| |.|.+|+|.
T Consensus 629 ~yNIryak~~Asne 642 (790)
T KOG0056|consen 629 LYNIRYAKPSASNE 642 (790)
T ss_pred eeheeecCCCCChH
Confidence 8888 889998884
No 456
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=85.65 E-value=0.58 Score=58.68 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccC
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA 1062 (1122)
|=+|+.+.-. .+..+.|+|||++||||++|.+ +|.|-|-
T Consensus 350 iL~~inl~i~-~G~~v~IvG~sGsGKSTLl~lL--------~gl~~p~ 388 (588)
T PRK13657 350 GVEDVSFEAK-PGQTVAIVGPTGAGKSTLINLL--------QRVFDPQ 388 (588)
T ss_pred eecceeEEEC-CCCEEEEECCCCCCHHHHHHHH--------hcCcCCC
Confidence 4455555422 3468999999999999999987 5666554
No 457
>PRK14974 cell division protein FtsY; Provisional
Probab=85.62 E-value=0.85 Score=52.85 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+++++++|||++||||.++-+|. .+.+-|.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~ 169 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF 169 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC
Confidence 57899999999999999999885 3556663
No 458
>PRK01156 chromosome segregation protein; Provisional
Probab=85.61 E-value=0.57 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|-.++++.
T Consensus 24 gi~~I~G~NGsGKSsileAI~~aL 47 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIRFAL 47 (895)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998654
No 459
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=85.30 E-value=0.69 Score=45.30 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ 1055 (1122)
.++++|+||.++||||++++++--.-..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~ 32 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEA 32 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhh
Confidence 47899999999999999999988766543
No 460
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=85.19 E-value=0.62 Score=47.01 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=17.9
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|.|++++||||++++++-
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 67999999999999998863
No 461
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=85.18 E-value=0.6 Score=65.56 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=26.6
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.++-. .+.++.|.|||++||||+||.++
T Consensus 1953 ~aL~~ISf~I~-~GEi~gLLG~NGAGKTTLlkmL~ 1986 (2272)
T TIGR01257 1953 PAVDRLCVGVR-PGECFGLLGVNGAGKTTTFKMLT 1986 (2272)
T ss_pred eEEEeeEEEEc-CCcEEEEECCCCCcHHHHHHHHh
Confidence 34566666532 35799999999999999999985
No 462
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=85.14 E-value=0.83 Score=57.26 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=29.9
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccC
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA 1062 (1122)
.|=+|+.+.- ..+..+.|+||+++||||+++.+ +|.| |.
T Consensus 364 ~vL~~i~l~i-~~G~~vaIvG~SGsGKSTL~~lL--------~g~~-p~ 402 (588)
T PRK11174 364 TLAGPLNFTL-PAGQRIALVGPSGAGKTSLLNAL--------LGFL-PY 402 (588)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHH--------hcCC-CC
Confidence 4556666653 23468999999999999999977 6777 74
No 463
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=84.96 E-value=0.62 Score=64.55 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|+|||++||||+|+.++
T Consensus 441 ~l~~i~l~i-~~G~~~~I~G~~GsGKSTLl~~l~ 473 (1490)
T TIGR01271 441 VLKNISFKL-EKGQLLAVAGSTGSGKSSLLMMIM 473 (1490)
T ss_pred ceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 445666643 235789999999999999999883
No 464
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=84.94 E-value=0.72 Score=57.32 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=28.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
.+=+|+.+.-. .+..+.|+|||++||||+++.+ +|.|-|.+
T Consensus 337 ~~l~~i~~~i~-~G~~~aivG~sGsGKSTL~~ll--------~g~~~~~~ 377 (547)
T PRK10522 337 FSVGPINLTIK-RGELLFLIGGNGSGKSTLAMLL--------TGLYQPQS 377 (547)
T ss_pred eEEecceEEEc-CCCEEEEECCCCCCHHHHHHHH--------hCCCCCCC
Confidence 34455555422 3468999999999999999987 56665543
No 465
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=84.93 E-value=0.45 Score=51.24 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=3.9
Q ss_pred hhhccccc
Q 001212 164 LKRLRRDS 171 (1122)
Q Consensus 164 ~~~~~~~~ 171 (1122)
|.+|+.|.
T Consensus 167 m~RLk~G~ 174 (303)
T KOG3064|consen 167 MERLKSGT 174 (303)
T ss_pred HHHHhcCC
Confidence 44555443
No 466
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=84.92 E-value=0.66 Score=57.78 Aligned_cols=40 Identities=30% Similarity=0.509 Sum_probs=28.8
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
+=+|+.+.- ..+..+.|+|||++||||+++.++ |.|-|-+
T Consensus 357 ~l~~vs~~i-~~G~~~aivG~sGsGKSTl~~ll~--------g~~~p~~ 396 (555)
T TIGR01194 357 ALGPIDLRI-AQGDIVFIVGENGCGKSTLAKLFC--------GLYIPQE 396 (555)
T ss_pred eeccceEEE-cCCcEEEEECCCCCCHHHHHHHHh--------CCCCCCC
Confidence 445555542 234689999999999999999884 6665543
No 467
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.92 E-value=0.8 Score=53.75 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=28.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcC----CcccCCccc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFE 1066 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG----~fVPA~~a~ 1066 (1122)
.+++|.|||++||||++..+|-..++.+ | .+|.++..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R 179 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYR 179 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEeccccc
Confidence 5899999999999999999987665432 3 345555543
No 468
>PRK01184 hypothetical protein; Provisional
Probab=84.88 E-value=0.8 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
+++||||-++||||+.+ ++.+.|+.|
T Consensus 3 ~i~l~G~~GsGKsT~a~------~~~~~g~~~ 28 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK------IAREMGIPV 28 (184)
T ss_pred EEEEECCCCCCHHHHHH------HHHHcCCcE
Confidence 68999999999999866 356778644
No 469
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=84.88 E-value=0.64 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++|+|++++||||+.+.++-
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998774
No 470
>PLN02796 D-glycerate 3-kinase
Probab=84.81 E-value=0.76 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-++.|.||+++||||+++.++-+
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 46789999999999999977643
No 471
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=84.65 E-value=0.68 Score=57.24 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=29.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
|=+|+.+.-. .+..+.|+||+++||||+++.+ +|.|-|-+
T Consensus 350 vL~~isl~i~-~G~~vaIvG~SGsGKSTLl~lL--------~g~~~p~~ 389 (529)
T TIGR02868 350 VLDGVSLDLP-PGERVAILGPSGSGKSTLLMLL--------TGLLDPLQ 389 (529)
T ss_pred eeecceEEEc-CCCEEEEECCCCCCHHHHHHHH--------hcCCCCCC
Confidence 4566666432 3468999999999999999987 56665544
No 472
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=84.60 E-value=0.92 Score=47.21 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=33.0
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceE
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrI 1073 (1122)
.-|-++.|.. ...+.|-|-|++||||+.|+++ |. ||-.+.+|-+=|+-
T Consensus 29 V~~vSFtL~~---~QTlaiIG~NGSGKSTLakMla--------Gm-i~PTsG~il~n~~~ 76 (267)
T COG4167 29 VKPVSFTLRE---GQTLAIIGENGSGKSTLAKMLA--------GM-IEPTSGEILINDHP 76 (267)
T ss_pred ccceEEEecC---CcEEEEEccCCCcHhHHHHHHh--------cc-cCCCCceEEECCcc
Confidence 3344556653 3578999999999999999985 33 45556666555543
No 473
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=84.54 E-value=4 Score=52.45 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
|=+|+.+.-. .+..+.|+|||++||||++|.+
T Consensus 489 iL~~isl~i~-~G~~vaIvG~SGsGKSTLlklL 520 (708)
T TIGR01193 489 ILSDISLTIK-MNSKTTIVGMSGSGKSTLAKLL 520 (708)
T ss_pred ceeceeEEEC-CCCEEEEECCCCCCHHHHHHHH
Confidence 4456666432 3467999999999999999987
No 474
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.51 E-value=0.7 Score=58.63 Aligned_cols=76 Identities=25% Similarity=0.439 Sum_probs=51.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHH-----HHH---HcCCccc--CCcc--ccCC--------cceEeeccCCcccccc
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAV-----ILA---QVGADVP--AEIF--EISP--------VDRIFVRMGAKDHIMA 1085 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLiv-----ILA---QiG~fVP--A~~a--~l~i--------vDrIfTRiGa~D~i~~ 1085 (1122)
.+++.+|-|||++||||+.=.|||.. +|. -+|-||= +..+ +|.+ +-|+-+|-+.++-..+
T Consensus 41 gpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~IEI~l~~~~e~~~ItR~I~~~k~S~y~iN 120 (1072)
T KOG0979|consen 41 GPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYIEIELKDKDETLTITRLISRDKESKYFIN 120 (1072)
T ss_pred CCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceEEEEEecCCCceEEEEEEeecCCcceeec
Confidence 46899999999999999999888864 221 1233331 1122 2222 3367778888888999
Q ss_pred CCChHHHHHHHHHHHH
Q 001212 1086 GQSTFLTELSETALML 1101 (1122)
Q Consensus 1086 g~STFmvEM~Eta~IL 1101 (1122)
|.||=-.|..|.-.-+
T Consensus 121 ~~a~t~s~i~elv~~f 136 (1072)
T KOG0979|consen 121 DSATTKSEIEELVAHF 136 (1072)
T ss_pred cchhhhHHHHHHHHHH
Confidence 9998887776664433
No 475
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=84.50 E-value=0.7 Score=57.79 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=25.3
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.|=+|+.+.-. .+..+.|+|||++||||++|.++
T Consensus 354 ~il~~i~~~i~-~G~~~aivG~sGsGKSTL~~ll~ 387 (574)
T PRK11160 354 PVLKGLSLQIK-AGEKVALLGRTGCGKSTLLQLLT 387 (574)
T ss_pred cceecceEEEC-CCCEEEEECCCCCCHHHHHHHHh
Confidence 34455555422 34689999999999999999883
No 476
>PRK03918 chromosome segregation protein; Provisional
Probab=84.38 E-value=0.75 Score=60.59 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
+.+|+|||++||||+|..|..+..
T Consensus 25 ~~~i~G~nG~GKStil~ai~~~l~ 48 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAILVGLY 48 (880)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHhc
Confidence 789999999999999998876554
No 477
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=84.32 E-value=0.56 Score=56.18 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=55.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHH--
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT-- 1092 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmv-- 1092 (1122)
+=+++.+|-+-+.| +-|-|||+.||||+||.+.- -+.-.+|.-.|-..+.|+.+ --+.+-.=++-.--++||.
T Consensus 405 iy~~l~fgid~~sr-vAlVGPNG~GKsTLlKl~~g-dl~p~~G~vs~~~H~~~~~y---~Qh~~e~ldl~~s~le~~~~~ 479 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSR-VALVGPNGAGKSTLLKLITG-DLQPTIGMVSRHSHNKLPRY---NQHLAEQLDLDKSSLEFMMPK 479 (614)
T ss_pred hhhhhhcccCcccc-eeEecCCCCchhhhHHHHhh-ccccccccccccccccchhh---hhhhHhhcCcchhHHHHHHHh
Confidence 44455555432334 56889999999999997643 35567888888888888833 3344444455555667764
Q ss_pred -----HHHHHHHHHHhc
Q 001212 1093 -----ELSETALMLVRF 1104 (1122)
Q Consensus 1093 -----EM~Eta~IL~~A 1104 (1122)
|..++..||...
T Consensus 480 ~~~~~~~e~~r~ilgrf 496 (614)
T KOG0927|consen 480 FPDEKELEEMRSILGRF 496 (614)
T ss_pred ccccchHHHHHHHHHHh
Confidence 456677777643
No 478
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=84.30 E-value=0.87 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++++|+||.++||||+.+.++-
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998643
No 479
>PLN02165 adenylate isopentenyltransferase
Probab=84.26 E-value=0.83 Score=52.60 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.1
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCcc
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF 1065 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a 1065 (1122)
...+++|.|||++||||+...+|-.. =|-.|.|++.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l----~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF----PSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc----CCceecCChh
Confidence 34689999999999999988765442 1345666654
No 480
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=84.24 E-value=0.82 Score=52.29 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
...+++||||+++||||+++.++-. +.+-|.-|
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~--~~~~~~~v 65 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME--LRRRGLKV 65 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH--HHHCCCeE
Confidence 3578999999999999999998775 34445544
No 481
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=84.19 E-value=0.73 Score=59.03 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=30.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
.|=+|+.+.-. .+..+.|+|||++||||++|.+ .|.|-|-+
T Consensus 479 ~vL~~i~l~i~-~G~~iaIvG~sGsGKSTLlklL--------~gl~~p~~ 519 (694)
T TIGR03375 479 PALDNVSLTIR-PGEKVAIIGRIGSGKSTLLKLL--------LGLYQPTE 519 (694)
T ss_pred cceeeeeEEEC-CCCEEEEECCCCCCHHHHHHHH--------hcCCCCCC
Confidence 45566666532 3468999999999999999988 47776654
No 482
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=84.10 E-value=0.75 Score=62.39 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|-.|..+.
T Consensus 24 ~~~~i~G~NGsGKS~ildAi~~~l 47 (1164)
T TIGR02169 24 GFTVISGPNGSGKSNIGDAILFAL 47 (1164)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 483
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=83.98 E-value=0.78 Score=51.47 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=18.2
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
.+++|+||.++||||+|+.+
T Consensus 81 GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 48999999999999999874
No 484
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=83.90 E-value=0.71 Score=64.88 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 945 aL~~lsl~I-~~Gei~aLLG~NGAGKSTLLkiLa 977 (2272)
T TIGR01257 945 AVDRLNITF-YENQITAFLGHNGAGKTTTLSILT 977 (2272)
T ss_pred EEEeeEEEE-cCCcEEEEECCCCChHHHHHHHHh
Confidence 445666643 235799999999999999999884
No 485
>PRK14737 gmk guanylate kinase; Provisional
Probab=83.62 E-value=0.94 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.5
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++++|+||.++||||+++.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALL 25 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999874
No 486
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.59 E-value=0.46 Score=48.42 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=16.1
Q ss_pred ceEEEEEecCCCchHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLR 1045 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LR 1045 (1122)
+++.|+-|||++||||+--
T Consensus 2 ~~l~IvaG~NGsGKstv~~ 20 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYA 20 (187)
T ss_pred ceEEEEecCCCCCceeeee
Confidence 3689999999999999743
No 487
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=83.58 E-value=0.78 Score=45.75 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.||+++||||+++++.
T Consensus 2 i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc
Confidence 5799999999999999884
No 488
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.57 E-value=0.79 Score=55.06 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=42.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccC--CChHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG--QSTFLTELSET 1097 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g--~STFmvEM~Et 1097 (1122)
.|+++||||-++||||.++-+|=+. | +--.=.+.+++-+++-.-.++....+ .++||.+|.+-
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskel-----g---~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesF 174 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKEL-----G---YQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESF 174 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhh-----C---ceeeeecCCccccccccccccchhcccchhhHHHHHHHH
Confidence 4799999999999999999765442 1 22222445666666666666666666 56777665543
No 489
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=83.54 E-value=0.78 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.-++|.|||++||||+||.++-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC
Confidence 3589999999999999999863
No 490
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.52 E-value=0.95 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.++++|+|||++||||+..|++.-
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998887654
No 491
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=83.46 E-value=0.82 Score=58.70 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.2
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.|=+|+.+.-. .+..+.|+|||++||||++|.+
T Consensus 493 ~vL~~isl~i~-~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 493 PLIENFSLTLQ-PGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred CcccceeEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 34556666532 3467999999999999999988
No 492
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.36 E-value=0.75 Score=62.81 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=25.0
Q ss_pred ceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1018 Di~L~~~~~~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
.+.+++ .+.+|+|+|++||||+|+.++.+.+
T Consensus 22 ~~~f~~----~~~~l~G~NGaGKSTll~ai~~~l~ 52 (1486)
T PRK04863 22 TFDLDE----LVTTLSGGNGAGKSTTMAAFVTALI 52 (1486)
T ss_pred EEEecC----CeEEEECCCCCCHHHHHHHHHcccc
Confidence 455543 3789999999999999999977764
No 493
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=83.25 E-value=0.94 Score=47.55 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=19.0
Q ss_pred ceEEEEEecCCCchHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqv 1047 (1122)
+.+++|+||-+.||||++|.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L 24 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKAL 24 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999975
No 494
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.24 E-value=0.83 Score=46.52 Aligned_cols=28 Identities=39% Similarity=0.411 Sum_probs=22.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+++|+|+.++||||+.|.++-.. .+-|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l--~~~g~ 28 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL--FQRGR 28 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH--HHcCC
Confidence 47899999999999999987753 35564
No 495
>PTZ00243 ABC transporter; Provisional
Probab=83.18 E-value=0.93 Score=63.04 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=25.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.+.- ..+.++.|+|||++||||+|+.++
T Consensus 674 ~iL~~isl~i-~~G~~~~IiG~nGsGKSTLL~~i~ 707 (1560)
T PTZ00243 674 VLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLL 707 (1560)
T ss_pred eeEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHh
Confidence 3445555542 235789999999999999999885
No 496
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=83.09 E-value=0.56 Score=60.77 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=2.9
Q ss_pred CCCCccc
Q 001212 32 SPSPTIS 38 (1122)
Q Consensus 32 ~~~p~~~ 38 (1122)
.+.|..+
T Consensus 433 ~~~~~~~ 439 (784)
T PF04931_consen 433 ELSPALS 439 (784)
T ss_pred ccccccc
Confidence 3444443
No 497
>PRK02496 adk adenylate kinase; Provisional
Probab=82.99 E-value=0.89 Score=47.81 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=17.7
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|+||.++||||+.+.++
T Consensus 4 i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999886
No 498
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=82.95 E-value=0.96 Score=58.09 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=25.6
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.|=+|+.+.-. .+..+.|+|||++||||+++.+
T Consensus 495 ~vL~~isl~i~-~Ge~vaIvG~SGsGKSTLl~lL 527 (711)
T TIGR00958 495 PVLKGLTFTLH-PGEVVALVGPSGSGKSTVAALL 527 (711)
T ss_pred ccccCceEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 45566666532 3468999999999999999987
No 499
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=82.93 E-value=0.95 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++||+||.++||||+.|+++-
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999643
No 500
>PRK06547 hypothetical protein; Provisional
Probab=82.90 E-value=1.1 Score=46.89 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCceEEEEEecCCCchHHHHHHHH
Q 001212 1025 GNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1025 ~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
....+++|+||.++||||+.+.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Done!