Query 001212
Match_columns 1122
No_of_seqs 521 out of 2372
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 16:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 100.0 2E-144 8E-149 1385.4 73.0 815 278-1114 18-876 (1022)
2 3thx_B DNA mismatch repair pro 100.0 6E-123 2E-127 1169.2 67.6 718 325-1107 11-753 (918)
3 1wb9_A DNA mismatch repair pro 100.0 1E-116 4E-121 1104.6 63.2 679 325-1114 8-694 (800)
4 1ewq_A DNA mismatch repair pro 100.0 1E-111 4E-116 1053.5 63.6 646 325-1114 11-663 (765)
5 3thx_A DNA mismatch repair pro 100.0 1E-107 4E-112 1033.1 60.0 705 325-1108 14-743 (934)
6 2l8d_A Lamin-B receptor; DNA b 97.5 0.00015 5E-09 59.8 5.5 44 105-148 11-54 (66)
7 2dig_A Lamin-B receptor; tudor 97.4 0.00018 6.1E-09 59.4 5.7 51 105-157 14-64 (68)
8 2g3r_A Tumor suppressor P53-bi 97.2 0.0003 1E-08 65.5 4.8 47 101-148 2-48 (123)
9 3p8d_A Medulloblastoma antigen 97.2 0.00045 1.5E-08 58.6 5.3 46 103-150 6-51 (67)
10 2equ_A PHD finger protein 20-l 97.0 0.00087 3E-08 58.3 5.8 52 102-157 8-59 (74)
11 3qii_A PHD finger protein 20; 97.0 0.00081 2.8E-08 59.4 5.3 46 102-149 20-65 (85)
12 1mhn_A SurviVal motor neuron p 96.8 0.0016 5.4E-08 54.3 5.3 47 104-150 4-51 (59)
13 2eqj_A Metal-response element- 96.6 0.0024 8.3E-08 53.3 5.4 46 104-150 14-59 (66)
14 1ssf_A Transformation related 96.6 0.0019 6.5E-08 62.8 5.5 50 99-149 4-53 (156)
15 2ldm_A Uncharacterized protein 95.6 0.00038 1.3E-08 61.3 0.0 46 103-150 6-51 (81)
16 4a4f_A SurviVal of motor neuro 96.3 0.0046 1.6E-07 52.4 5.3 48 103-150 8-56 (64)
17 3s6w_A Tudor domain-containing 96.2 0.0055 1.9E-07 50.0 5.2 45 106-150 4-49 (54)
18 1znw_A Guanylate kinase, GMP k 96.1 0.0024 8.4E-08 66.9 3.5 35 1013-1050 9-43 (207)
19 1g5v_A SurviVal motor neuron p 96.1 0.0062 2.1E-07 54.8 5.5 48 103-150 10-58 (88)
20 3tif_A Uncharacterized ABC tra 95.9 0.0033 1.1E-07 67.6 2.9 33 1015-1048 20-52 (235)
21 2pcj_A ABC transporter, lipopr 95.9 0.0031 1.1E-07 67.3 2.7 32 1015-1047 19-50 (224)
22 3tr0_A Guanylate kinase, GMP k 95.7 0.0046 1.6E-07 64.2 3.4 23 1027-1049 7-29 (205)
23 3a00_A Guanylate kinase, GMP k 95.7 0.0042 1.4E-07 63.9 2.8 22 1028-1049 2-23 (186)
24 2m0o_A PHD finger protein 1; t 95.7 0.034 1.2E-06 47.4 7.7 45 105-150 28-72 (79)
25 2d9t_A Tudor domain-containing 95.7 0.012 4.2E-07 51.8 5.3 48 103-150 9-57 (78)
26 1ye8_A Protein THEP1, hypothet 95.6 0.0055 1.9E-07 62.9 3.2 23 1029-1051 2-24 (178)
27 2olj_A Amino acid ABC transpor 95.6 0.0048 1.6E-07 67.5 2.9 32 1015-1047 39-70 (263)
28 1vpl_A ABC transporter, ATP-bi 95.6 0.0048 1.6E-07 67.2 2.9 32 1015-1047 30-61 (256)
29 2onk_A Molybdate/tungstate ABC 95.6 0.0055 1.9E-07 66.1 3.3 30 1017-1048 16-45 (240)
30 1b0u_A Histidine permease; ABC 95.6 0.0049 1.7E-07 67.4 2.9 32 1015-1047 21-52 (262)
31 1sgw_A Putative ABC transporte 95.6 0.004 1.4E-07 66.0 2.1 32 1015-1047 24-55 (214)
32 1ji0_A ABC transporter; ATP bi 95.5 0.0046 1.6E-07 66.7 2.5 33 1015-1048 21-53 (240)
33 2zu0_C Probable ATP-dependent 95.5 0.006 2E-07 66.9 3.4 35 1014-1049 34-68 (267)
34 2cbz_A Multidrug resistance-as 95.5 0.0053 1.8E-07 66.1 2.9 31 1017-1048 22-52 (237)
35 3gfo_A Cobalt import ATP-bindi 95.5 0.0047 1.6E-07 68.0 2.5 32 1015-1047 23-54 (275)
36 2qi9_C Vitamin B12 import ATP- 95.5 0.0049 1.7E-07 66.9 2.5 22 1027-1048 26-47 (249)
37 2jeo_A Uridine-cytidine kinase 95.5 0.0069 2.3E-07 65.3 3.6 36 1014-1050 13-48 (245)
38 2yz2_A Putative ABC transporte 95.5 0.0056 1.9E-07 67.1 2.9 31 1016-1047 23-53 (266)
39 1htw_A HI0065; nucleotide-bind 95.5 0.0076 2.6E-07 60.7 3.7 36 1015-1051 22-57 (158)
40 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0059 2E-07 66.3 3.1 34 1015-1049 18-51 (250)
41 2pze_A Cystic fibrosis transme 95.5 0.0052 1.8E-07 65.8 2.5 33 1015-1048 23-55 (229)
42 1mv5_A LMRA, multidrug resista 95.4 0.006 2.1E-07 65.9 3.0 22 1027-1048 28-49 (243)
43 2ehv_A Hypothetical protein PH 95.4 0.0099 3.4E-07 63.5 4.6 26 1027-1052 30-55 (251)
44 4gp7_A Metallophosphoesterase; 95.4 0.0066 2.3E-07 61.7 3.0 20 1027-1046 9-28 (171)
45 1g6h_A High-affinity branched- 95.4 0.0052 1.8E-07 67.0 2.2 33 1015-1048 22-54 (257)
46 1zp6_A Hypothetical protein AT 95.4 0.0085 2.9E-07 61.4 3.8 23 1027-1049 9-31 (191)
47 2ixe_A Antigen peptide transpo 95.4 0.0064 2.2E-07 66.8 2.9 33 1015-1048 34-66 (271)
48 2ff7_A Alpha-hemolysin translo 95.4 0.0058 2E-07 66.2 2.5 33 1015-1048 24-56 (247)
49 2ihy_A ABC transporter, ATP-bi 95.3 0.0058 2E-07 67.5 2.5 32 1015-1047 36-67 (279)
50 3kta_A Chromosome segregation 95.3 0.0087 3E-07 61.0 3.7 24 1028-1051 27-50 (182)
51 2nq2_C Hypothetical ABC transp 95.3 0.0061 2.1E-07 66.3 2.5 33 1015-1048 20-52 (253)
52 3pnw_C Tudor domain-containing 95.3 0.022 7.5E-07 50.0 5.5 48 103-150 17-65 (77)
53 4g1u_C Hemin import ATP-bindin 95.3 0.0063 2.2E-07 66.7 2.5 34 1014-1048 25-58 (266)
54 3fvq_A Fe(3+) IONS import ATP- 95.2 0.0085 2.9E-07 68.3 3.6 35 1014-1049 18-52 (359)
55 2ghi_A Transport protein; mult 95.1 0.0083 2.8E-07 65.5 2.9 33 1015-1048 35-67 (260)
56 3asz_A Uridine kinase; cytidin 95.1 0.011 3.8E-07 61.7 3.7 24 1027-1050 6-29 (211)
57 2bdt_A BH3686; alpha-beta prot 95.1 0.01 3.5E-07 60.9 3.3 21 1028-1048 3-23 (189)
58 2pjz_A Hypothetical protein ST 95.0 0.0089 3E-07 65.4 2.8 20 1028-1047 31-50 (263)
59 1z6g_A Guanylate kinase; struc 95.0 0.0097 3.3E-07 63.0 3.0 23 1027-1049 23-45 (218)
60 1s96_A Guanylate kinase, GMP k 95.0 0.011 3.8E-07 62.8 3.4 22 1027-1048 16-37 (219)
61 3b85_A Phosphate starvation-in 95.0 0.0098 3.4E-07 62.7 2.9 30 1028-1059 23-52 (208)
62 2bbs_A Cystic fibrosis transme 95.0 0.01 3.4E-07 65.9 3.1 22 1027-1048 64-85 (290)
63 3lnc_A Guanylate kinase, GMP k 95.0 0.0082 2.8E-07 63.9 2.3 22 1027-1048 27-48 (231)
64 4hcz_A PHD finger protein 1; p 95.0 0.037 1.3E-06 44.8 5.4 44 106-150 6-49 (58)
65 2yyz_A Sugar ABC transporter, 94.9 0.011 3.9E-07 67.4 3.4 34 1015-1049 18-51 (359)
66 4eun_A Thermoresistant glucoki 94.9 0.013 4.3E-07 61.0 3.4 23 1027-1049 29-51 (200)
67 1lvg_A Guanylate kinase, GMP k 94.9 0.011 3.6E-07 61.7 2.8 23 1027-1049 4-26 (198)
68 1z47_A CYSA, putative ABC-tran 94.9 0.011 3.7E-07 67.4 3.1 33 1015-1048 30-62 (355)
69 3d31_A Sulfate/molybdate ABC t 94.9 0.0098 3.4E-07 67.7 2.7 33 1015-1048 15-47 (348)
70 2it1_A 362AA long hypothetical 94.9 0.012 4.2E-07 67.2 3.4 33 1015-1048 18-50 (362)
71 1v43_A Sugar-binding transport 94.9 0.012 4.2E-07 67.5 3.4 33 1015-1048 26-58 (372)
72 3rlf_A Maltose/maltodextrin im 94.8 0.012 4.2E-07 67.5 3.4 33 1015-1048 18-50 (381)
73 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.017 5.9E-07 57.3 4.1 24 1028-1051 24-47 (149)
74 4a74_A DNA repair and recombin 94.8 0.015 5.2E-07 61.2 3.7 25 1027-1051 25-49 (231)
75 3c8u_A Fructokinase; YP_612366 94.8 0.015 5.1E-07 60.9 3.6 24 1027-1050 22-45 (208)
76 3tui_C Methionine import ATP-b 94.7 0.015 5E-07 66.5 3.4 33 1015-1048 43-75 (366)
77 1g29_1 MALK, maltose transport 94.6 0.013 4.6E-07 67.2 3.1 33 1015-1048 18-50 (372)
78 1kag_A SKI, shikimate kinase I 94.6 0.014 4.8E-07 58.7 2.9 22 1028-1049 5-26 (173)
79 1kgd_A CASK, peripheral plasma 94.6 0.016 5.5E-07 59.2 3.3 23 1027-1049 5-27 (180)
80 1oxx_K GLCV, glucose, ABC tran 94.6 0.01 3.5E-07 67.7 2.0 33 1015-1048 20-52 (353)
81 2eyu_A Twitching motility prot 94.4 0.02 6.8E-07 62.5 3.6 24 1027-1050 25-48 (261)
82 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.019 6.5E-07 60.4 3.4 26 1027-1052 23-48 (235)
83 3gd7_A Fusion complex of cysti 94.3 0.02 7E-07 66.0 3.6 35 1014-1049 35-69 (390)
84 2j41_A Guanylate kinase; GMP, 94.3 0.022 7.5E-07 59.0 3.4 22 1027-1048 6-27 (207)
85 2i3b_A HCR-ntpase, human cance 94.2 0.019 6.5E-07 59.5 2.8 27 1029-1057 3-29 (189)
86 3qks_A DNA double-strand break 94.2 0.033 1.1E-06 58.3 4.7 26 1028-1053 24-49 (203)
87 1knq_A Gluconate kinase; ALFA/ 94.2 0.024 8.2E-07 57.2 3.5 23 1027-1049 8-30 (175)
88 3tau_A Guanylate kinase, GMP k 94.1 0.024 8.4E-07 59.3 3.4 22 1027-1048 8-29 (208)
89 2bbw_A Adenylate kinase 4, AK4 94.1 0.024 8.2E-07 60.9 3.3 22 1027-1048 27-48 (246)
90 2xk0_A Polycomb protein PCL; t 94.0 0.12 4E-06 43.4 6.5 45 103-150 15-59 (69)
91 3qf7_A RAD50; ABC-ATPase, ATPa 94.0 0.033 1.1E-06 63.8 4.6 24 1028-1051 24-47 (365)
92 1nlf_A Regulatory protein REPA 94.0 0.033 1.1E-06 61.0 4.4 35 1017-1051 20-54 (279)
93 3ec2_A DNA replication protein 94.0 0.022 7.5E-07 57.9 2.7 25 1027-1051 38-62 (180)
94 1tf7_A KAIC; homohexamer, hexa 93.9 0.023 7.8E-07 68.4 3.1 38 1017-1054 29-66 (525)
95 3uie_A Adenylyl-sulfate kinase 93.8 0.032 1.1E-06 57.9 3.7 26 1026-1051 24-49 (200)
96 3aez_A Pantothenate kinase; tr 93.8 0.042 1.4E-06 61.5 4.6 24 1027-1050 90-113 (312)
97 1nij_A Hypothetical protein YJ 93.7 0.028 9.6E-07 63.1 3.2 21 1028-1048 5-25 (318)
98 3jvv_A Twitching mobility prot 93.6 0.031 1.1E-06 63.8 3.2 22 1028-1049 124-145 (356)
99 1sq5_A Pantothenate kinase; P- 93.5 0.039 1.3E-06 61.6 3.8 24 1027-1050 80-103 (308)
100 3nh6_A ATP-binding cassette SU 93.4 0.025 8.6E-07 63.1 2.1 34 1014-1048 68-101 (306)
101 1cr0_A DNA primase/helicase; R 93.4 0.043 1.5E-06 60.6 4.0 28 1026-1053 34-61 (296)
102 2if2_A Dephospho-COA kinase; a 93.2 0.042 1.4E-06 56.9 3.3 21 1029-1049 3-23 (204)
103 4aby_A DNA repair protein RECN 93.2 0.024 8.2E-07 65.8 1.6 23 1029-1051 62-84 (415)
104 1p9r_A General secretion pathw 93.2 0.042 1.4E-06 64.1 3.5 23 1027-1049 167-189 (418)
105 2v9p_A Replication protein E1; 93.1 0.034 1.2E-06 62.0 2.5 45 1017-1063 117-161 (305)
106 1jjv_A Dephospho-COA kinase; P 93.1 0.045 1.6E-06 56.8 3.3 22 1028-1049 3-24 (206)
107 3ozx_A RNAse L inhibitor; ATP 92.8 0.053 1.8E-06 65.3 3.8 35 1014-1048 9-46 (538)
108 1rz3_A Hypothetical protein rb 92.8 0.062 2.1E-06 55.8 3.8 23 1027-1049 22-44 (201)
109 2kjq_A DNAA-related protein; s 92.8 0.047 1.6E-06 54.2 2.7 35 1027-1063 36-73 (149)
110 3auy_A DNA double-strand break 92.7 0.067 2.3E-06 61.3 4.3 25 1028-1052 26-50 (371)
111 3fdr_A Tudor and KH domain-con 92.6 0.14 4.6E-06 46.7 5.4 47 103-150 27-74 (94)
112 3euj_A Chromosome partition pr 92.6 0.067 2.3E-06 63.3 4.2 24 1028-1051 30-53 (483)
113 3vaa_A Shikimate kinase, SK; s 92.6 0.061 2.1E-06 55.7 3.4 36 1013-1049 12-47 (199)
114 2e5p_A Protein PHF1, PHD finge 92.5 0.18 6.2E-06 41.9 5.3 45 105-150 11-55 (68)
115 3sop_A Neuronal-specific septi 92.5 0.059 2E-06 59.0 3.3 24 1029-1052 4-27 (270)
116 3qkt_A DNA double-strand break 92.5 0.074 2.5E-06 60.2 4.2 24 1028-1051 24-47 (339)
117 2yhs_A FTSY, cell division pro 92.3 0.084 2.9E-06 62.4 4.6 24 1027-1050 293-316 (503)
118 3t61_A Gluconokinase; PSI-biol 92.3 0.057 2E-06 55.9 2.8 22 1028-1049 19-40 (202)
119 2pez_A Bifunctional 3'-phospho 92.3 0.073 2.5E-06 53.9 3.5 31 1027-1059 5-35 (179)
120 4e22_A Cytidylate kinase; P-lo 92.3 0.067 2.3E-06 57.8 3.4 22 1027-1048 27-48 (252)
121 1n0w_A DNA repair protein RAD5 92.2 0.052 1.8E-06 57.6 2.4 27 1027-1053 24-50 (243)
122 2iw3_A Elongation factor 3A; a 92.2 0.057 2E-06 68.9 3.1 34 1014-1048 449-482 (986)
123 3b9q_A Chloroplast SRP recepto 92.1 0.076 2.6E-06 59.2 3.7 25 1027-1051 100-124 (302)
124 3ney_A 55 kDa erythrocyte memb 92.1 0.078 2.7E-06 55.2 3.4 22 1027-1048 19-40 (197)
125 1yqt_A RNAse L inhibitor; ATP- 92.1 0.069 2.4E-06 64.4 3.5 22 1027-1048 47-68 (538)
126 2eqk_A Tudor domain-containing 92.0 0.17 5.8E-06 44.8 4.9 53 103-157 21-73 (85)
127 2ewv_A Twitching motility prot 92.0 0.075 2.6E-06 61.0 3.5 24 1027-1050 136-159 (372)
128 2e5q_A PHD finger protein 19; 91.9 0.18 6.3E-06 41.3 4.6 45 105-150 9-53 (63)
129 2gza_A Type IV secretion syste 91.9 0.069 2.4E-06 61.0 3.1 21 1027-1047 175-195 (361)
130 2cvh_A DNA repair and recombin 91.9 0.092 3.1E-06 54.7 3.8 24 1026-1049 19-42 (220)
131 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.071 2.4E-06 62.9 3.1 25 1027-1051 138-162 (460)
132 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.058 2E-06 60.9 2.2 33 1015-1048 160-192 (330)
133 1cke_A CK, MSSA, protein (cyti 91.7 0.084 2.9E-06 55.5 3.3 21 1028-1048 6-26 (227)
134 1e69_A Chromosome segregation 91.6 0.066 2.3E-06 60.1 2.5 22 1029-1050 26-47 (322)
135 2o5v_A DNA replication and rep 91.6 0.11 3.6E-06 59.4 4.2 24 1028-1051 27-50 (359)
136 2vp4_A Deoxynucleoside kinase; 91.6 0.062 2.1E-06 57.1 2.1 25 1026-1050 19-43 (230)
137 3bk7_A ABC transporter ATP-bin 91.5 0.083 2.9E-06 64.5 3.4 22 1027-1048 382-403 (607)
138 1rj9_A FTSY, signal recognitio 91.5 0.094 3.2E-06 58.5 3.5 24 1027-1050 102-125 (304)
139 3e70_C DPA, signal recognition 91.4 0.099 3.4E-06 58.9 3.6 25 1026-1050 128-152 (328)
140 1w1w_A Structural maintenance 91.4 0.094 3.2E-06 61.3 3.6 25 1027-1051 26-50 (430)
141 1lw7_A Transcriptional regulat 91.4 0.087 3E-06 60.2 3.2 35 1013-1050 159-193 (365)
142 2og2_A Putative signal recogni 91.4 0.11 3.9E-06 59.1 4.1 25 1027-1051 157-181 (359)
143 1yqt_A RNAse L inhibitor; ATP- 91.3 0.091 3.1E-06 63.3 3.4 22 1027-1048 312-333 (538)
144 3j16_B RLI1P; ribosome recycli 91.2 0.097 3.3E-06 63.9 3.5 22 1027-1048 103-124 (608)
145 3tqc_A Pantothenate kinase; bi 91.2 0.12 4.2E-06 58.0 4.0 22 1028-1049 93-114 (321)
146 2dr3_A UPF0273 protein PH0284; 91.0 0.14 4.8E-06 54.2 4.2 26 1027-1052 23-48 (247)
147 3bk7_A ABC transporter ATP-bin 90.9 0.095 3.2E-06 64.0 2.9 22 1027-1048 117-138 (607)
148 2qt1_A Nicotinamide riboside k 90.8 0.13 4.4E-06 53.4 3.5 23 1027-1049 21-43 (207)
149 2x8a_A Nuclear valosin-contain 90.7 0.11 3.6E-06 57.1 2.9 20 1030-1049 47-66 (274)
150 2qor_A Guanylate kinase; phosp 90.6 0.12 4E-06 53.8 3.0 22 1027-1048 12-33 (204)
151 2oap_1 GSPE-2, type II secreti 90.6 0.098 3.4E-06 62.6 2.7 20 1028-1047 261-280 (511)
152 1pzn_A RAD51, DNA repair and r 90.6 0.13 4.4E-06 58.5 3.5 26 1026-1051 130-155 (349)
153 3cm0_A Adenylate kinase; ATP-b 90.5 0.13 4.6E-06 52.0 3.3 22 1027-1048 4-25 (186)
154 3ozx_A RNAse L inhibitor; ATP 90.4 0.11 3.7E-06 62.6 2.9 22 1027-1048 294-315 (538)
155 2ze6_A Isopentenyl transferase 90.4 0.13 4.6E-06 55.5 3.3 22 1028-1049 2-23 (253)
156 2qm8_A GTPase/ATPase; G protei 90.3 0.14 4.9E-06 57.8 3.6 24 1027-1050 55-78 (337)
157 3b5x_A Lipid A export ATP-bind 90.2 0.13 4.4E-06 62.7 3.3 33 1015-1048 358-390 (582)
158 2diq_A Tudor and KH domain-con 90.2 0.19 6.6E-06 47.1 3.8 52 103-157 32-84 (110)
159 1qhl_A Protein (cell division 90.2 0.057 2E-06 57.6 0.2 24 1028-1051 28-51 (227)
160 3j16_B RLI1P; ribosome recycli 90.2 0.13 4.5E-06 62.7 3.3 21 1028-1048 379-399 (608)
161 3kb2_A SPBC2 prophage-derived 90.1 0.15 5.1E-06 50.7 3.2 21 1028-1048 2-22 (173)
162 1ly1_A Polynucleotide kinase; 90.1 0.16 5.5E-06 50.9 3.4 22 1028-1049 3-24 (181)
163 2yvu_A Probable adenylyl-sulfa 89.9 0.17 5.9E-06 51.5 3.5 30 1027-1058 13-42 (186)
164 3b60_A Lipid A export ATP-bind 89.8 0.13 4.6E-06 62.5 3.1 32 1015-1047 358-389 (582)
165 4a82_A Cystic fibrosis transme 89.8 0.28 9.7E-06 59.6 5.8 33 1014-1047 355-387 (578)
166 2yl4_A ATP-binding cassette SU 89.7 0.12 4.1E-06 63.1 2.4 33 1014-1047 358-390 (595)
167 3qf4_B Uncharacterized ABC tra 89.6 0.15 5.1E-06 62.3 3.2 33 1014-1047 369-401 (598)
168 2iw3_A Elongation factor 3A; a 89.6 0.088 3E-06 67.3 1.2 31 1017-1048 690-720 (986)
169 1tq4_A IIGP1, interferon-induc 89.6 0.16 5.6E-06 58.9 3.3 20 1029-1048 71-90 (413)
170 1ixz_A ATP-dependent metallopr 89.5 0.16 5.3E-06 54.6 3.0 20 1030-1049 52-71 (254)
171 2obl_A ESCN; ATPase, hydrolase 89.5 0.18 6.1E-06 57.3 3.5 24 1027-1050 71-94 (347)
172 3ux8_A Excinuclease ABC, A sub 89.4 0.14 4.7E-06 63.5 2.8 45 992-1049 326-370 (670)
173 1in4_A RUVB, holliday junction 89.4 0.15 5.1E-06 57.5 2.8 23 1028-1050 52-74 (334)
174 1vma_A Cell division protein F 89.3 0.28 9.6E-06 54.6 4.9 24 1027-1050 104-127 (306)
175 1svm_A Large T antigen; AAA+ f 89.2 0.19 6.6E-06 57.6 3.5 23 1027-1049 169-191 (377)
176 3lw7_A Adenylate kinase relate 89.1 0.22 7.6E-06 49.3 3.5 26 1028-1059 2-27 (179)
177 1zu4_A FTSY; GTPase, signal re 89.0 0.33 1.1E-05 54.5 5.2 31 1026-1058 104-134 (320)
178 2qag_B Septin-6, protein NEDD5 89.0 0.18 6.2E-06 58.7 3.1 24 1027-1050 40-65 (427)
179 1via_A Shikimate kinase; struc 88.9 0.18 6.2E-06 50.7 2.8 21 1029-1049 6-26 (175)
180 2yv5_A YJEQ protein; hydrolase 88.9 0.2 6.7E-06 55.7 3.3 21 1028-1048 166-186 (302)
181 3lda_A DNA repair protein RAD5 88.8 0.16 5.4E-06 58.8 2.5 27 1027-1053 178-204 (400)
182 3pih_A Uvrabc system protein A 88.8 0.34 1.1E-05 61.7 5.6 53 992-1057 588-640 (916)
183 4eaq_A DTMP kinase, thymidylat 88.7 0.27 9.1E-06 52.3 4.0 23 1027-1049 26-48 (229)
184 2rhm_A Putative kinase; P-loop 88.6 0.25 8.5E-06 50.2 3.5 22 1027-1048 5-26 (193)
185 1iy2_A ATP-dependent metallopr 88.3 0.21 7.1E-06 54.5 3.0 21 1030-1050 76-96 (278)
186 1m7g_A Adenylylsulfate kinase; 88.1 0.26 8.8E-06 51.4 3.4 23 1027-1049 25-47 (211)
187 3cr8_A Sulfate adenylyltranfer 88.1 0.2 6.9E-06 60.4 2.9 24 1027-1050 369-392 (552)
188 1qhx_A CPT, protein (chloramph 88.1 0.26 8.9E-06 49.5 3.3 21 1028-1048 4-24 (178)
189 3ux8_A Excinuclease ABC, A sub 88.1 0.19 6.4E-06 62.3 2.6 39 993-1044 23-61 (670)
190 3qf4_A ABC transporter, ATP-bi 88.0 0.84 2.9E-05 55.5 8.3 33 1015-1048 358-390 (587)
191 2p5t_B PEZT; postsegregational 88.0 0.2 6.7E-06 54.0 2.5 23 1027-1049 32-54 (253)
192 1gvn_B Zeta; postsegregational 88.0 0.25 8.6E-06 54.4 3.3 22 1027-1048 33-54 (287)
193 1oix_A RAS-related protein RAB 88.0 0.27 9.1E-06 50.2 3.3 20 1029-1048 31-50 (191)
194 1y63_A LMAJ004144AAA protein; 87.9 0.31 1.1E-05 49.6 3.8 23 1027-1049 10-32 (184)
195 2dpy_A FLII, flagellum-specifi 87.9 0.26 9E-06 57.7 3.6 24 1027-1050 157-180 (438)
196 1vht_A Dephospho-COA kinase; s 87.8 0.27 9.4E-06 51.3 3.4 22 1027-1048 4-25 (218)
197 1tf7_A KAIC; homohexamer, hexa 87.8 0.26 8.9E-06 59.2 3.6 25 1027-1051 281-305 (525)
198 4ad8_A DNA repair protein RECN 87.6 0.14 4.8E-06 61.3 1.1 24 1028-1051 61-84 (517)
199 2px0_A Flagellar biosynthesis 87.6 0.33 1.1E-05 53.8 4.0 36 1027-1064 105-144 (296)
200 1ls1_A Signal recognition part 87.6 0.44 1.5E-05 52.7 5.0 31 1027-1059 98-128 (295)
201 3nwj_A ATSK2; P loop, shikimat 87.3 0.26 8.8E-06 53.3 2.9 23 1027-1049 48-70 (250)
202 2orw_A Thymidine kinase; TMTK, 87.3 0.34 1.2E-05 49.6 3.6 26 1028-1053 4-29 (184)
203 1kht_A Adenylate kinase; phosp 87.3 0.31 1.1E-05 49.3 3.3 22 1028-1049 4-25 (192)
204 2f9l_A RAB11B, member RAS onco 87.2 0.28 9.4E-06 50.3 2.9 20 1029-1048 7-26 (199)
205 1tev_A UMP-CMP kinase; ploop, 87.1 0.33 1.1E-05 49.2 3.4 21 1028-1048 4-24 (196)
206 2ygr_A Uvrabc system protein A 87.0 0.46 1.6E-05 60.6 5.3 44 992-1048 646-689 (993)
207 1u0l_A Probable GTPase ENGC; p 87.0 0.25 8.4E-06 54.9 2.6 21 1028-1048 170-190 (301)
208 3hr8_A Protein RECA; alpha and 87.0 0.37 1.3E-05 54.8 4.1 38 1015-1052 47-86 (356)
209 2vli_A Antibiotic resistance p 86.9 0.26 8.7E-06 49.7 2.4 22 1027-1048 5-26 (183)
210 1q3t_A Cytidylate kinase; nucl 86.7 0.34 1.2E-05 51.4 3.4 22 1027-1048 16-37 (236)
211 1ex7_A Guanylate kinase; subst 86.7 0.3 1E-05 50.2 2.9 20 1028-1047 2-21 (186)
212 2rcn_A Probable GTPase ENGC; Y 86.5 0.33 1.1E-05 55.2 3.2 21 1028-1048 216-236 (358)
213 2f1r_A Molybdopterin-guanine d 86.3 0.24 8.4E-06 50.2 1.9 23 1028-1050 3-25 (171)
214 2r6f_A Excinuclease ABC subuni 85.8 0.43 1.5E-05 60.7 4.1 44 992-1048 628-671 (972)
215 1np6_A Molybdopterin-guanine d 85.5 0.43 1.5E-05 48.6 3.2 31 1028-1060 7-37 (174)
216 1sxj_E Activator 1 40 kDa subu 85.4 0.32 1.1E-05 54.7 2.4 21 1030-1050 39-59 (354)
217 3iij_A Coilin-interacting nucl 85.3 0.41 1.4E-05 48.3 3.0 21 1028-1048 12-32 (180)
218 3szr_A Interferon-induced GTP- 85.1 0.39 1.3E-05 58.7 3.1 32 1029-1068 47-78 (608)
219 2c95_A Adenylate kinase 1; tra 85.0 0.5 1.7E-05 48.0 3.5 22 1027-1048 9-30 (196)
220 1uf9_A TT1252 protein; P-loop, 85.0 0.54 1.9E-05 48.1 3.8 23 1027-1049 8-30 (203)
221 2jaq_A Deoxyguanosine kinase; 84.8 0.47 1.6E-05 48.5 3.2 20 1029-1048 2-21 (205)
222 2vf7_A UVRA2, excinuclease ABC 84.7 0.36 1.2E-05 60.9 2.7 43 991-1046 500-542 (842)
223 1lv7_A FTSH; alpha/beta domain 84.7 0.48 1.6E-05 50.8 3.3 22 1028-1049 46-67 (257)
224 2qnr_A Septin-2, protein NEDD5 84.6 0.42 1.4E-05 53.0 2.9 19 1030-1048 21-39 (301)
225 1qf9_A UMP/CMP kinase, protein 84.6 0.55 1.9E-05 47.4 3.5 21 1028-1048 7-27 (194)
226 3bos_A Putative DNA replicatio 84.3 0.52 1.8E-05 49.2 3.4 25 1027-1051 52-76 (242)
227 1pui_A ENGB, probable GTP-bind 84.3 0.3 1E-05 50.2 1.5 22 1027-1048 26-47 (210)
228 1gtv_A TMK, thymidylate kinase 84.2 0.33 1.1E-05 50.2 1.8 20 1029-1048 2-21 (214)
229 1nks_A Adenylate kinase; therm 84.1 0.57 2E-05 47.3 3.5 22 1028-1049 2-23 (194)
230 3dlm_A Histone-lysine N-methyl 84.0 1 3.6E-05 46.5 5.2 49 102-150 67-119 (213)
231 2z0h_A DTMP kinase, thymidylat 83.8 0.55 1.9E-05 47.7 3.2 30 1029-1060 2-31 (197)
232 3ake_A Cytidylate kinase; CMP 83.8 0.55 1.9E-05 48.2 3.2 21 1029-1049 4-24 (208)
233 2zr9_A Protein RECA, recombina 83.7 0.67 2.3E-05 52.5 4.1 49 1015-1063 47-98 (349)
234 3r20_A Cytidylate kinase; stru 83.6 0.56 1.9E-05 50.1 3.2 21 1028-1048 10-30 (233)
235 2plr_A DTMP kinase, probable t 83.5 0.61 2.1E-05 47.9 3.4 22 1028-1049 5-26 (213)
236 1t9h_A YLOQ, probable GTPase E 83.4 0.25 8.7E-06 55.0 0.4 21 1028-1048 174-194 (307)
237 2w58_A DNAI, primosome compone 83.3 0.61 2.1E-05 47.8 3.3 24 1028-1051 55-78 (202)
238 3a4m_A L-seryl-tRNA(SEC) kinas 83.2 0.62 2.1E-05 50.3 3.4 31 1027-1059 4-34 (260)
239 1e6c_A Shikimate kinase; phosp 83.0 0.55 1.9E-05 46.7 2.7 22 1028-1049 3-24 (173)
240 1zd8_A GTP:AMP phosphotransfer 82.8 0.67 2.3E-05 48.7 3.4 22 1027-1048 7-28 (227)
241 1ukz_A Uridylate kinase; trans 82.7 0.71 2.4E-05 47.4 3.5 22 1027-1048 15-36 (203)
242 1njg_A DNA polymerase III subu 82.6 0.66 2.3E-05 48.1 3.3 23 1028-1050 46-68 (250)
243 3trf_A Shikimate kinase, SK; a 82.5 0.69 2.4E-05 46.6 3.3 22 1028-1049 6-27 (185)
244 2wwf_A Thymidilate kinase, put 82.5 0.74 2.5E-05 47.5 3.6 23 1027-1049 10-32 (212)
245 2ro0_A Histone acetyltransfera 82.5 3.9 0.00013 36.9 7.8 43 105-149 25-72 (92)
246 1odf_A YGR205W, hypothetical 3 82.4 0.73 2.5E-05 50.8 3.7 24 1027-1050 31-54 (290)
247 2wac_A CG7008-PA; unknown func 82.4 1.2 4.2E-05 46.5 5.3 45 104-150 52-97 (218)
248 1ltq_A Polynucleotide kinase; 82.3 0.68 2.3E-05 50.8 3.4 22 1028-1049 3-24 (301)
249 2bwj_A Adenylate kinase 5; pho 82.3 0.74 2.5E-05 46.9 3.4 22 1028-1049 13-34 (199)
250 1nn5_A Similar to deoxythymidy 82.3 0.75 2.6E-05 47.4 3.6 23 1027-1049 9-31 (215)
251 2www_A Methylmalonic aciduria 81.9 0.73 2.5E-05 52.2 3.5 22 1028-1049 75-96 (349)
252 2v54_A DTMP kinase, thymidylat 81.8 0.78 2.7E-05 46.9 3.4 22 1027-1048 4-25 (204)
253 2xb4_A Adenylate kinase; ATP-b 81.7 0.72 2.5E-05 48.5 3.2 21 1029-1049 2-22 (223)
254 3cf0_A Transitional endoplasmi 81.6 0.71 2.4E-05 51.0 3.2 22 1028-1049 50-71 (301)
255 1sxj_C Activator 1 40 kDa subu 81.6 0.65 2.2E-05 52.1 2.9 22 1030-1051 49-70 (340)
256 1fnn_A CDC6P, cell division co 81.5 0.7 2.4E-05 52.3 3.2 21 1029-1049 46-66 (389)
257 2eko_A Histone acetyltransfera 81.4 1.6 5.4E-05 39.1 4.7 41 103-143 9-54 (87)
258 3ntk_A Maternal protein tudor; 81.2 1.5 5E-05 44.3 5.1 50 103-157 47-97 (169)
259 1wgs_A MYST histone acetyltran 81.1 1.5 5.1E-05 42.5 4.8 38 105-143 14-55 (133)
260 2qag_C Septin-7; cell cycle, c 81.0 0.61 2.1E-05 54.2 2.4 19 1030-1048 34-52 (418)
261 2iyv_A Shikimate kinase, SK; t 80.9 0.72 2.5E-05 46.5 2.7 22 1028-1049 3-24 (184)
262 2b8t_A Thymidine kinase; deoxy 80.8 1.1 3.7E-05 47.5 4.1 51 1027-1079 12-64 (223)
263 2qby_A CDC6 homolog 1, cell di 80.7 0.78 2.7E-05 51.7 3.2 24 1027-1050 45-68 (386)
264 2pbr_A DTMP kinase, thymidylat 80.6 0.86 2.9E-05 46.1 3.2 29 1029-1059 2-30 (195)
265 2p67_A LAO/AO transport system 80.5 0.95 3.2E-05 51.0 3.8 30 1027-1058 56-85 (341)
266 2pt5_A Shikimate kinase, SK; a 80.2 0.91 3.1E-05 44.9 3.1 21 1029-1049 2-22 (168)
267 2cdn_A Adenylate kinase; phosp 80.1 0.93 3.2E-05 46.5 3.3 23 1027-1049 20-42 (201)
268 1zak_A Adenylate kinase; ATP:A 80.1 0.87 3E-05 47.6 3.1 21 1028-1048 6-26 (222)
269 3zvl_A Bifunctional polynucleo 80.1 0.85 2.9E-05 53.0 3.3 23 1026-1048 257-279 (416)
270 3fb4_A Adenylate kinase; psych 80.0 0.91 3.1E-05 47.1 3.2 20 1029-1048 2-21 (216)
271 3b9p_A CG5977-PA, isoform A; A 80.0 0.86 2.9E-05 49.8 3.2 22 1028-1049 55-76 (297)
272 1jbk_A CLPB protein; beta barr 79.6 1.1 3.7E-05 44.6 3.6 24 1027-1050 43-66 (195)
273 2r6a_A DNAB helicase, replicat 79.6 1 3.6E-05 52.8 3.9 29 1026-1054 202-230 (454)
274 1aky_A Adenylate kinase; ATP:A 79.6 1 3.5E-05 47.0 3.4 23 1027-1049 4-26 (220)
275 3llm_A ATP-dependent RNA helic 79.6 1.2 4.2E-05 47.0 4.1 26 1028-1053 77-102 (235)
276 3m6a_A ATP-dependent protease 79.6 0.89 3E-05 54.8 3.3 24 1028-1051 109-132 (543)
277 1xjc_A MOBB protein homolog; s 79.4 1.5 5.1E-05 44.3 4.4 31 1028-1060 5-35 (169)
278 2orv_A Thymidine kinase; TP4A 79.2 1.3 4.6E-05 47.0 4.1 75 1027-1103 19-114 (234)
279 3h4m_A Proteasome-activating n 78.8 0.96 3.3E-05 49.0 3.1 22 1028-1049 52-73 (285)
280 3dl0_A Adenylate kinase; phosp 78.6 1.1 3.6E-05 46.6 3.2 20 1029-1048 2-21 (216)
281 2lcc_A AT-rich interactive dom 78.2 1.8 6E-05 37.7 3.9 39 105-143 7-49 (76)
282 1l8q_A Chromosomal replication 77.9 1 3.4E-05 50.1 2.9 24 1028-1051 38-61 (324)
283 1j8m_F SRP54, signal recogniti 77.9 1.5 5E-05 48.5 4.2 30 1027-1058 98-127 (297)
284 2wji_A Ferrous iron transport 77.8 1.1 3.9E-05 44.1 3.0 21 1028-1048 4-24 (165)
285 2wjg_A FEOB, ferrous iron tran 77.5 1.1 3.9E-05 44.7 3.0 21 1028-1048 8-28 (188)
286 2rnz_A Histone acetyltransfera 77.2 6 0.00021 35.8 7.2 37 105-143 27-65 (94)
287 3kl4_A SRP54, signal recogniti 77.2 1.5 5.1E-05 51.1 4.1 23 1027-1049 97-119 (433)
288 2p65_A Hypothetical protein PF 76.4 1.2 4.1E-05 44.3 2.7 24 1027-1050 43-66 (187)
289 1e4v_A Adenylate kinase; trans 76.4 1.4 4.8E-05 45.7 3.3 20 1030-1049 3-22 (214)
290 3foz_A TRNA delta(2)-isopenten 76.4 1.5 5.3E-05 48.6 3.7 34 1027-1065 10-44 (316)
291 1v5w_A DMC1, meiotic recombina 76.2 1.2 4.2E-05 50.1 3.1 28 1026-1053 121-148 (343)
292 1uj2_A Uridine-cytidine kinase 75.9 1.5 5.2E-05 46.9 3.5 23 1026-1048 21-43 (252)
293 4b9x_A TDRD1, tudor domain-con 75.8 2.9 9.9E-05 44.2 5.6 50 105-157 67-117 (226)
294 2f6r_A COA synthase, bifunctio 75.7 1.6 5.4E-05 47.8 3.6 22 1027-1048 75-96 (281)
295 3tlx_A Adenylate kinase 2; str 75.7 1.6 5.3E-05 46.6 3.5 22 1027-1048 29-50 (243)
296 2dhr_A FTSH; AAA+ protein, hex 75.6 1.2 4.2E-05 52.9 2.9 22 1029-1050 66-87 (499)
297 4ag6_A VIRB4 ATPase, type IV s 75.5 1.1 3.8E-05 51.3 2.5 24 1029-1052 37-60 (392)
298 2gj8_A MNME, tRNA modification 75.4 1.5 5.1E-05 43.7 3.1 20 1029-1048 6-25 (172)
299 1ni3_A YCHF GTPase, YCHF GTP-b 75.2 1.8 6.2E-05 49.8 4.1 22 1028-1049 21-42 (392)
300 3h8z_A FragIle X mental retard 75.1 3.3 0.00011 39.7 5.2 49 105-157 62-117 (128)
301 3crm_A TRNA delta(2)-isopenten 75.0 1.6 5.4E-05 48.9 3.4 33 1028-1065 6-39 (323)
302 3k1j_A LON protease, ATP-depen 74.8 1.3 4.5E-05 54.0 3.0 23 1028-1050 61-83 (604)
303 3exa_A TRNA delta(2)-isopenten 74.7 1.7 5.8E-05 48.4 3.5 33 1028-1065 4-37 (322)
304 3be4_A Adenylate kinase; malar 74.5 1.7 5.9E-05 45.2 3.4 22 1028-1049 6-27 (217)
305 2zej_A Dardarin, leucine-rich 74.5 1.3 4.4E-05 44.5 2.4 19 1030-1048 5-23 (184)
306 3d3q_A TRNA delta(2)-isopenten 74.3 1.6 5.6E-05 49.1 3.3 33 1028-1065 8-41 (340)
307 4fcw_A Chaperone protein CLPB; 74.0 1.6 5.3E-05 47.9 3.1 23 1029-1051 49-71 (311)
308 1zuh_A Shikimate kinase; alpha 74.0 1.7 6E-05 43.0 3.2 21 1028-1048 8-28 (168)
309 3g5u_A MCG1178, multidrug resi 73.5 1.2 4.1E-05 59.2 2.3 40 1014-1062 404-443 (1284)
310 1sxj_D Activator 1 41 kDa subu 73.4 1.6 5.4E-05 48.7 3.0 23 1030-1052 61-83 (353)
311 4edh_A DTMP kinase, thymidylat 73.4 2 6.7E-05 45.0 3.5 31 1027-1059 6-36 (213)
312 1c9k_A COBU, adenosylcobinamid 73.3 1.7 5.8E-05 44.4 2.9 21 1029-1049 1-21 (180)
313 2ffh_A Protein (FFH); SRP54, s 72.7 2.4 8.2E-05 49.3 4.3 24 1027-1050 98-121 (425)
314 2r2a_A Uncharacterized protein 72.5 2.2 7.4E-05 44.3 3.5 20 1028-1047 6-25 (199)
315 2ce7_A Cell division protein F 72.5 1.8 6.2E-05 51.1 3.3 22 1028-1049 50-71 (476)
316 2grj_A Dephospho-COA kinase; T 72.5 2 6.7E-05 44.3 3.2 23 1027-1049 12-34 (192)
317 1a7j_A Phosphoribulokinase; tr 72.4 1.3 4.3E-05 48.9 1.8 23 1027-1049 5-27 (290)
318 2z4s_A Chromosomal replication 72.3 1.7 5.7E-05 50.9 2.9 24 1028-1051 131-154 (440)
319 3lv8_A DTMP kinase, thymidylat 72.2 2.2 7.5E-05 45.5 3.6 29 1027-1057 27-55 (236)
320 3g5u_A MCG1178, multidrug resi 71.7 1.6 5.4E-05 58.1 2.8 30 1017-1047 1050-1079(1284)
321 2i1q_A DNA repair and recombin 71.6 1.6 5.3E-05 48.6 2.4 28 1027-1054 98-125 (322)
322 2ocp_A DGK, deoxyguanosine kin 71.2 2.4 8.2E-05 44.8 3.6 23 1027-1049 2-24 (241)
323 2ga8_A Hypothetical 39.9 kDa p 70.9 2.2 7.5E-05 48.3 3.3 24 1028-1051 25-48 (359)
324 2z43_A DNA repair and recombin 70.9 2.2 7.5E-05 47.6 3.4 27 1027-1053 107-133 (324)
325 4a1f_A DNAB helicase, replicat 70.4 2.8 9.5E-05 47.2 4.0 27 1027-1053 46-72 (338)
326 2hqx_A P100 CO-activator tudor 70.2 4 0.00014 43.6 5.1 50 104-157 66-116 (246)
327 2h92_A Cytidylate kinase; ross 70.2 2.1 7.2E-05 44.3 2.9 22 1028-1049 4-25 (219)
328 2qmh_A HPR kinase/phosphorylas 70.1 2.6 9E-05 43.7 3.4 20 1028-1047 35-54 (205)
329 2chg_A Replication factor C sm 69.8 2.2 7.7E-05 43.4 3.0 22 1029-1050 40-61 (226)
330 2f5k_A MORF-related gene 15 is 69.7 4.7 0.00016 37.1 4.6 37 105-143 24-62 (102)
331 3n70_A Transport activator; si 69.7 2.4 8.1E-05 41.2 2.9 21 1029-1049 26-46 (145)
332 1zcb_A G alpha I/13; GTP-bindi 69.4 2.4 8.2E-05 48.2 3.3 22 1029-1050 35-56 (362)
333 2qz4_A Paraplegin; AAA+, SPG7, 69.4 2.5 8.4E-05 44.9 3.3 22 1028-1049 40-61 (262)
334 4tmk_A Protein (thymidylate ki 69.2 2.8 9.6E-05 43.9 3.6 29 1028-1058 4-32 (213)
335 1udx_A The GTP-binding protein 69.1 1.4 4.9E-05 51.1 1.4 21 1028-1048 158-178 (416)
336 3v9p_A DTMP kinase, thymidylat 69.1 2.3 7.9E-05 45.0 2.9 23 1027-1049 25-47 (227)
337 1ypw_A Transitional endoplasmi 69.1 1.9 6.6E-05 54.3 2.7 22 1028-1049 239-260 (806)
338 3umf_A Adenylate kinase; rossm 69.0 2.8 9.7E-05 44.0 3.5 23 1026-1048 28-50 (217)
339 1ak2_A Adenylate kinase isoenz 68.8 2.7 9.4E-05 44.2 3.4 22 1028-1049 17-38 (233)
340 1xx6_A Thymidine kinase; NESG, 68.6 3.8 0.00013 42.1 4.4 52 1027-1079 8-61 (191)
341 3bh0_A DNAB-like replicative h 68.6 2.8 9.6E-05 46.6 3.6 28 1026-1053 67-94 (315)
342 3t15_A Ribulose bisphosphate c 68.2 2.8 9.4E-05 46.1 3.4 24 1027-1050 36-59 (293)
343 2bud_A Males-absent on the fir 68.2 8 0.00027 34.7 5.7 37 107-144 18-59 (92)
344 3e2i_A Thymidine kinase; Zn-bi 67.8 3.6 0.00012 43.2 4.0 51 1026-1078 27-80 (219)
345 4b9w_A TDRD1, tudor domain-con 67.8 6.1 0.00021 40.8 5.7 50 105-157 67-117 (201)
346 2v1u_A Cell division control p 67.6 2.2 7.7E-05 47.9 2.6 24 1027-1050 44-67 (387)
347 2eqm_A PHD finger protein 20-l 67.4 20 0.00068 32.0 8.2 49 106-155 22-73 (88)
348 2zts_A Putative uncharacterize 67.3 4.2 0.00014 42.6 4.5 38 1026-1063 29-68 (251)
349 3dm5_A SRP54, signal recogniti 67.1 3.8 0.00013 47.8 4.4 30 1027-1058 100-129 (443)
350 2q6t_A DNAB replication FORK h 66.9 3.2 0.00011 48.5 3.8 28 1026-1053 199-226 (444)
351 2xtz_A Guanine nucleotide-bind 66.8 3.5 0.00012 46.7 3.9 31 1030-1064 12-42 (354)
352 4f4c_A Multidrug resistance pr 66.7 11 0.00037 50.3 9.2 42 1013-1063 431-472 (1321)
353 1u94_A RECA protein, recombina 66.6 3.6 0.00012 46.7 3.9 38 1026-1063 62-100 (356)
354 3ld9_A DTMP kinase, thymidylat 66.1 3.5 0.00012 43.5 3.5 30 1027-1058 21-51 (223)
355 2qqr_A JMJC domain-containing 66.0 6.3 0.00021 37.2 4.8 51 102-156 62-112 (118)
356 1ega_A Protein (GTP-binding pr 65.1 3.3 0.00011 45.7 3.2 22 1027-1048 8-29 (301)
357 2ged_A SR-beta, signal recogni 65.0 3.3 0.00011 41.6 3.0 22 1028-1049 49-70 (193)
358 2vhj_A Ntpase P4, P4; non- hyd 65.0 4.5 0.00015 45.2 4.2 34 1027-1062 123-156 (331)
359 1jr3_A DNA polymerase III subu 64.5 3.3 0.00011 46.4 3.2 22 1028-1049 39-60 (373)
360 3e1s_A Exodeoxyribonuclease V, 63.8 4.7 0.00016 48.7 4.6 32 1027-1060 204-235 (574)
361 2ius_A DNA translocase FTSK; n 63.7 3.5 0.00012 49.0 3.3 25 1029-1053 169-193 (512)
362 1d2n_A N-ethylmaleimide-sensit 63.5 3.8 0.00013 44.1 3.3 24 1027-1050 64-87 (272)
363 2qtf_A Protein HFLX, GTP-bindi 63.5 3.6 0.00012 46.8 3.2 21 1028-1048 180-200 (364)
364 2qby_B CDC6 homolog 3, cell di 62.9 4.2 0.00014 45.8 3.7 24 1027-1050 45-68 (384)
365 3eph_A TRNA isopentenyltransfe 62.5 4.2 0.00014 46.8 3.5 34 1028-1065 3-36 (409)
366 2r62_A Cell division protease 62.5 1.9 6.4E-05 46.3 0.6 22 1029-1050 46-67 (268)
367 2dyk_A GTP-binding protein; GT 62.5 4 0.00014 39.3 3.0 20 1029-1048 3-22 (161)
368 3uk6_A RUVB-like 2; hexameric 62.3 4.1 0.00014 45.7 3.4 23 1028-1050 71-93 (368)
369 3lxx_A GTPase IMAP family memb 62.0 3.9 0.00013 43.1 3.0 21 1028-1048 30-50 (239)
370 1xwi_A SKD1 protein; VPS4B, AA 61.9 4 0.00014 45.4 3.2 23 1028-1050 46-68 (322)
371 3syl_A Protein CBBX; photosynt 61.7 5.2 0.00018 43.6 4.1 24 1028-1051 68-91 (309)
372 3a8t_A Adenylate isopentenyltr 61.6 4.6 0.00016 45.4 3.5 34 1027-1065 40-74 (339)
373 2xau_A PRE-mRNA-splicing facto 61.5 1.2 4E-05 56.0 -1.4 22 1028-1049 110-131 (773)
374 1fzq_A ADP-ribosylation factor 61.3 4.2 0.00014 40.6 2.9 21 1028-1048 17-37 (181)
375 3tmk_A Thymidylate kinase; pho 61.2 4.9 0.00017 42.2 3.5 22 1027-1048 5-26 (216)
376 2xdp_A Lysine-specific demethy 61.1 11 0.00036 35.9 5.4 40 102-143 63-102 (123)
377 4fid_A G protein alpha subunit 60.8 4.7 0.00016 45.4 3.4 21 1030-1050 8-28 (340)
378 1moz_A ARL1, ADP-ribosylation 60.5 3.6 0.00012 40.7 2.2 21 1028-1048 19-39 (183)
379 2ce2_X GTPase HRAS; signaling 60.4 4.8 0.00016 38.6 3.1 19 1030-1048 6-24 (166)
380 3sr0_A Adenylate kinase; phosp 60.1 4.8 0.00016 41.8 3.2 20 1029-1048 2-21 (206)
381 3pfi_A Holliday junction ATP-d 59.8 4.3 0.00015 45.1 3.0 22 1028-1049 56-77 (338)
382 1m2o_B GTP-binding protein SAR 59.5 4.9 0.00017 40.5 3.1 20 1029-1048 25-44 (190)
383 1z2a_A RAS-related protein RAB 59.5 4.8 0.00017 38.9 3.0 19 1030-1048 8-26 (168)
384 3d8b_A Fidgetin-like protein 1 59.4 4.7 0.00016 45.5 3.2 22 1028-1049 118-139 (357)
385 1p5z_B DCK, deoxycytidine kina 59.3 3 0.0001 44.7 1.5 22 1027-1048 24-45 (263)
386 3eie_A Vacuolar protein sortin 59.0 4.9 0.00017 44.5 3.3 23 1028-1050 52-74 (322)
387 1ofh_A ATP-dependent HSL prote 58.6 4.7 0.00016 43.8 3.0 22 1029-1050 52-73 (310)
388 1svi_A GTP-binding protein YSX 58.4 5.2 0.00018 40.0 3.1 21 1028-1048 24-44 (195)
389 1ky3_A GTP-binding protein YPT 58.4 5.1 0.00017 39.3 3.0 20 1029-1048 10-29 (182)
390 3co5_A Putative two-component 58.4 2.7 9.3E-05 40.6 0.9 21 1029-1049 29-49 (143)
391 2qqr_A JMJC domain-containing 57.8 7.6 0.00026 36.6 3.8 38 105-144 7-44 (118)
392 3bgw_A DNAB-like replicative h 57.8 5.8 0.0002 46.3 3.7 29 1026-1054 196-224 (444)
393 1z0j_A RAB-22, RAS-related pro 57.7 5.4 0.00018 38.6 3.0 19 1030-1048 9-27 (170)
394 2qen_A Walker-type ATPase; unk 57.6 5.2 0.00018 44.1 3.2 21 1028-1048 32-52 (350)
395 2cxx_A Probable GTP-binding pr 57.5 5.6 0.00019 39.5 3.1 19 1030-1048 4-22 (190)
396 1ek0_A Protein (GTP-binding pr 57.4 5.5 0.00019 38.5 3.0 19 1030-1048 6-24 (170)
397 2j9r_A Thymidine kinase; TK1, 57.4 6.9 0.00023 41.0 3.8 34 1027-1060 28-61 (214)
398 2erx_A GTP-binding protein DI- 57.4 5.5 0.00019 38.6 3.0 19 1030-1048 6-24 (172)
399 3pvs_A Replication-associated 57.3 5.3 0.00018 46.7 3.2 23 1028-1050 51-73 (447)
400 3k53_A Ferrous iron transport 57.3 5.3 0.00018 43.0 3.0 20 1028-1047 4-23 (271)
401 1z08_A RAS-related protein RAB 57.2 5.5 0.00019 38.6 3.0 19 1030-1048 9-27 (170)
402 1g16_A RAS-related protein SEC 57.2 5.8 0.0002 38.4 3.1 19 1030-1048 6-24 (170)
403 1cip_A Protein (guanine nucleo 57.0 5.6 0.00019 45.0 3.3 22 1030-1051 35-56 (353)
404 1u8z_A RAS-related protein RAL 56.9 5.7 0.00019 38.2 3.0 19 1030-1048 7-25 (168)
405 1mky_A Probable GTP-binding pr 56.8 5 0.00017 46.7 3.0 20 1029-1048 182-201 (439)
406 3sd4_A PHD finger protein 20; 56.5 21 0.00073 30.1 6.1 37 106-143 15-51 (69)
407 1tue_A Replication protein E1; 56.4 5 0.00017 41.9 2.5 23 1028-1050 59-81 (212)
408 2wsm_A Hydrogenase expression/ 56.4 6.8 0.00023 40.3 3.6 24 1027-1050 30-53 (221)
409 4i1u_A Dephospho-COA kinase; s 56.4 6.2 0.00021 41.2 3.3 45 1029-1079 11-63 (210)
410 1wms_A RAB-9, RAB9, RAS-relate 56.4 5.8 0.0002 38.8 3.0 19 1030-1048 10-28 (177)
411 4hlc_A DTMP kinase, thymidylat 56.2 6.5 0.00022 40.7 3.4 21 1028-1048 3-23 (205)
412 1f6b_A SAR1; gtpases, N-termin 56.1 5.4 0.00018 40.5 2.7 20 1029-1048 27-46 (198)
413 2lkc_A Translation initiation 56.0 6.9 0.00024 38.3 3.5 21 1028-1048 9-29 (178)
414 3pqc_A Probable GTP-binding pr 55.7 6.2 0.00021 39.2 3.1 19 1029-1047 25-43 (195)
415 2fna_A Conserved hypothetical 55.6 6.1 0.00021 43.6 3.3 22 1028-1049 31-52 (357)
416 1upt_A ARL1, ADP-ribosylation 55.4 6.2 0.00021 38.3 3.0 20 1029-1048 9-28 (171)
417 1kao_A RAP2A; GTP-binding prot 55.4 6.2 0.00021 37.9 3.0 19 1030-1048 6-24 (167)
418 3hws_A ATP-dependent CLP prote 55.2 5.6 0.00019 44.8 3.0 22 1029-1050 53-74 (363)
419 1nrj_B SR-beta, signal recogni 55.2 6 0.00021 40.5 3.0 21 1028-1048 13-33 (218)
420 2bjv_A PSP operon transcriptio 55.0 5.9 0.0002 42.3 3.0 21 1029-1049 31-51 (265)
421 3p32_A Probable GTPase RV1496/ 54.9 8.8 0.0003 43.2 4.5 29 1028-1058 80-108 (355)
422 2e87_A Hypothetical protein PH 54.7 5.4 0.00018 45.0 2.7 21 1028-1048 168-188 (357)
423 2a9k_A RAS-related protein RAL 54.7 6.4 0.00022 38.8 3.0 20 1029-1048 20-39 (187)
424 2qag_A Septin-2, protein NEDD5 54.5 4.8 0.00016 45.6 2.2 18 1030-1047 40-57 (361)
425 2y8e_A RAB-protein 6, GH09086P 54.4 6.8 0.00023 38.2 3.1 19 1030-1048 17-35 (179)
426 2chq_A Replication factor C sm 54.3 5.9 0.0002 43.1 2.9 22 1030-1051 41-62 (319)
427 2nzj_A GTP-binding protein REM 54.1 6.7 0.00023 38.2 3.0 19 1030-1048 7-25 (175)
428 1iqp_A RFCS; clamp loader, ext 53.9 6.1 0.00021 43.2 2.9 23 1029-1051 48-70 (327)
429 2bme_A RAB4A, RAS-related prot 53.9 7 0.00024 38.7 3.1 20 1029-1048 12-31 (186)
430 1z0f_A RAB14, member RAS oncog 53.8 6.8 0.00023 38.3 3.0 20 1029-1048 17-36 (179)
431 1sxj_A Activator 1 95 kDa subu 53.8 6.4 0.00022 46.8 3.3 23 1028-1050 78-100 (516)
432 3q85_A GTP-binding protein REM 53.8 6.8 0.00023 38.0 3.0 19 1030-1048 5-23 (169)
433 2qgz_A Helicase loader, putati 53.6 8.5 0.00029 42.5 4.0 25 1028-1052 153-177 (308)
434 1hqc_A RUVB; extended AAA-ATPa 53.3 5 0.00017 44.1 2.1 22 1028-1049 39-60 (324)
435 2zan_A Vacuolar protein sortin 53.1 6.8 0.00023 45.7 3.3 23 1028-1050 168-190 (444)
436 2qp9_X Vacuolar protein sortin 53.1 6.3 0.00022 44.4 2.9 23 1028-1050 85-107 (355)
437 2ygr_A Uvrabc system protein A 53.0 10 0.00035 48.5 4.9 40 992-1044 24-63 (993)
438 1c1y_A RAS-related protein RAP 52.9 7.2 0.00025 37.6 3.0 19 1030-1048 6-24 (167)
439 2hf9_A Probable hydrogenase ni 52.8 8.4 0.00029 39.7 3.6 24 1027-1050 38-61 (226)
440 2fn4_A P23, RAS-related protei 52.7 7.5 0.00026 38.0 3.1 21 1029-1049 11-31 (181)
441 1x6v_B Bifunctional 3'-phospho 52.7 7.4 0.00025 47.4 3.5 30 1027-1058 52-81 (630)
442 1m7b_A RND3/RHOE small GTP-bin 52.6 7.5 0.00026 38.6 3.1 19 1030-1048 10-28 (184)
443 3tqf_A HPR(Ser) kinase; transf 52.6 9.1 0.00031 38.8 3.6 30 1028-1063 17-46 (181)
444 3ihw_A Centg3; RAS, centaurin, 52.4 7.3 0.00025 39.0 3.0 19 1030-1048 23-41 (184)
445 3bc1_A RAS-related protein RAB 52.4 7.3 0.00025 38.6 3.0 20 1029-1048 13-32 (195)
446 3q72_A GTP-binding protein RAD 52.4 7.4 0.00025 37.6 2.9 18 1030-1047 5-22 (166)
447 1xp8_A RECA protein, recombina 52.3 9.7 0.00033 43.2 4.3 27 1026-1052 73-99 (366)
448 3pih_A Uvrabc system protein A 52.2 9.8 0.00033 48.4 4.7 39 993-1044 3-41 (916)
449 3hjn_A DTMP kinase, thymidylat 52.1 7.9 0.00027 39.8 3.2 30 1029-1060 2-31 (197)
450 3tw8_B RAS-related protein RAB 51.8 7.2 0.00025 38.1 2.8 19 1030-1048 12-30 (181)
451 3ask_A E3 ubiquitin-protein li 51.8 15 0.00051 38.6 5.2 50 106-155 5-64 (226)
452 4dsu_A GTPase KRAS, isoform 2B 51.8 7.5 0.00026 38.4 3.0 19 1030-1048 7-25 (189)
453 2axn_A 6-phosphofructo-2-kinas 51.8 7.5 0.00026 46.3 3.4 23 1027-1049 35-57 (520)
454 3con_A GTPase NRAS; structural 51.6 7.6 0.00026 38.6 3.0 20 1029-1048 23-42 (190)
455 3ohm_A Guanine nucleotide-bind 51.5 7.9 0.00027 43.3 3.3 21 1030-1050 10-30 (327)
456 2vf7_A UVRA2, excinuclease ABC 51.3 10 0.00035 47.8 4.6 43 992-1047 14-56 (842)
457 1r2q_A RAS-related protein RAB 51.0 8.1 0.00028 37.3 3.0 19 1030-1048 9-27 (170)
458 2efe_B Small GTP-binding prote 50.9 8 0.00027 37.9 3.0 19 1030-1048 15-33 (181)
459 2r6f_A Excinuclease ABC subuni 50.2 11 0.00039 47.8 4.8 40 992-1044 22-61 (972)
460 1vg8_A RAS-related protein RAB 50.2 8.2 0.00028 38.9 3.0 20 1029-1048 10-29 (207)
461 2fg5_A RAB-22B, RAS-related pr 50.1 8.6 0.0003 38.5 3.1 19 1030-1048 26-44 (192)
462 2hxs_A RAB-26, RAS-related pro 50.0 8.4 0.00029 37.6 3.0 19 1030-1048 9-27 (178)
463 2oil_A CATX-8, RAS-related pro 49.8 8.3 0.00028 38.5 2.9 19 1030-1048 28-46 (193)
464 4b4t_K 26S protease regulatory 49.7 8.4 0.00029 44.7 3.2 23 1027-1049 206-228 (428)
465 1sxj_B Activator 1 37 kDa subu 49.6 8 0.00027 42.1 3.0 22 1030-1051 45-66 (323)
466 1m8p_A Sulfate adenylyltransfe 49.5 8.8 0.0003 46.3 3.5 29 1027-1057 396-424 (573)
467 1w4r_A Thymidine kinase; type 49.3 7.9 0.00027 39.9 2.6 59 1014-1078 11-71 (195)
468 3vfd_A Spastin; ATPase, microt 49.2 8.5 0.00029 43.8 3.2 22 1028-1049 149-170 (389)
469 1r8s_A ADP-ribosylation factor 49.2 9 0.00031 36.9 3.0 20 1030-1049 3-22 (164)
470 3tkl_A RAS-related protein RAB 49.1 8.8 0.0003 38.3 3.0 19 1030-1048 19-37 (196)
471 1mh1_A RAC1; GTP-binding, GTPa 49.0 8.9 0.0003 37.7 3.0 19 1030-1048 8-26 (186)
472 1um8_A ATP-dependent CLP prote 49.0 8.1 0.00028 43.7 3.0 22 1029-1050 74-95 (376)
473 2r44_A Uncharacterized protein 49.0 6.6 0.00022 43.4 2.2 20 1030-1049 49-68 (331)
474 1q57_A DNA primase/helicase; d 48.8 7.6 0.00026 46.0 2.8 28 1026-1053 241-268 (503)
475 3kkq_A RAS-related protein M-R 48.8 9 0.00031 37.7 3.0 20 1029-1048 20-39 (183)
476 3t34_A Dynamin-related protein 48.7 8.8 0.0003 43.2 3.2 20 1029-1048 36-55 (360)
477 3bdl_A Staphylococcal nuclease 48.7 14 0.00047 44.6 5.1 45 104-150 412-457 (570)
478 2o52_A RAS-related protein RAB 48.7 9.3 0.00032 38.7 3.1 19 1030-1048 28-46 (200)
479 2gf9_A RAS-related protein RAB 48.6 9 0.00031 38.2 3.0 20 1029-1048 24-43 (189)
480 3clv_A RAB5 protein, putative; 48.6 9 0.00031 38.1 3.0 19 1030-1048 10-28 (208)
481 2bov_A RAla, RAS-related prote 48.5 9 0.00031 38.5 3.0 20 1029-1048 16-35 (206)
482 4b4t_L 26S protease subunit RP 48.0 9.3 0.00032 44.5 3.3 23 1027-1049 215-237 (437)
483 3hu3_A Transitional endoplasmi 48.0 9.2 0.00032 45.2 3.3 22 1028-1049 239-260 (489)
484 1bif_A 6-phosphofructo-2-kinas 48.0 9.5 0.00032 44.7 3.4 24 1027-1050 39-62 (469)
485 2g6b_A RAS-related protein RAB 47.9 9.5 0.00033 37.3 3.0 20 1029-1048 12-31 (180)
486 1zj6_A ADP-ribosylation factor 47.8 9.9 0.00034 37.8 3.1 21 1028-1048 17-37 (187)
487 2gf0_A GTP-binding protein DI- 47.8 9.8 0.00034 38.0 3.1 20 1029-1048 10-29 (199)
488 2h17_A ADP-ribosylation factor 47.6 9.5 0.00032 37.7 2.9 20 1029-1048 23-42 (181)
489 2ew1_A RAS-related protein RAB 47.6 9.9 0.00034 38.8 3.1 20 1029-1048 28-47 (201)
490 3dz8_A RAS-related protein RAB 47.5 10 0.00034 37.9 3.1 19 1030-1048 26-44 (191)
491 3t5g_A GTP-binding protein RHE 47.5 10 0.00035 37.3 3.1 20 1029-1048 8-27 (181)
492 3ice_A Transcription terminati 47.4 13 0.00043 42.6 4.1 24 1028-1051 175-198 (422)
493 1ypw_A Transitional endoplasmi 47.4 4.7 0.00016 50.9 0.6 25 1027-1051 511-535 (806)
494 1azs_C GS-alpha; complex (lyas 47.2 10 0.00035 43.6 3.4 21 1030-1050 43-63 (402)
495 2v3c_C SRP54, signal recogniti 47.2 8 0.00027 45.0 2.6 24 1027-1050 99-122 (432)
496 2a5j_A RAS-related protein RAB 46.7 10 0.00034 38.0 2.9 19 1030-1048 24-42 (191)
497 2xdp_A Lysine-specific demethy 46.6 5.2 0.00018 38.0 0.7 47 105-154 8-54 (123)
498 1g8p_A Magnesium-chelatase 38 46.6 6.7 0.00023 43.5 1.7 20 1030-1049 48-67 (350)
499 1w5s_A Origin recognition comp 46.5 8 0.00027 43.9 2.4 24 1027-1050 50-75 (412)
500 3u61_B DNA polymerase accessor 46.2 8.8 0.0003 42.2 2.6 23 1027-1049 48-70 (324)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.2e-144 Score=1385.41 Aligned_cols=815 Identities=39% Similarity=0.658 Sum_probs=656.7
Q ss_pred ccccccccccccccccccCC-CCCccCCCCCCCCCCCCCCCCCCchhhcCCCHHHHHHHHHHhhCCCeEEEEeeCceEEE
Q 001212 278 GDVSERFSAREADKFHFLGP-DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYEL 356 (1122)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~dp~ydp~Tl~iP~~~~~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYEl 356 (1122)
|+..++++.|.|++|+||++ +|||++||||+||+|||||||||+++++++||||||||+||++||||||||||||||||
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYEl 97 (1022)
T 2o8b_B 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL 97 (1022)
T ss_dssp ------CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEE
T ss_pred CCccccccccccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEE
Confidence 56678888999999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHhhhhcceeeecCCCCcCCcCcccHhHHHHHHHHcCCeEEEEecCCChHHHHHHhhhcC---CCCCeeeeeEEE
Q 001212 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVVKREICA 433 (1122)
Q Consensus 357 f~~DA~i~ak~L~L~~~~g~~p~~GfPe~sl~~y~~kLv~~GyKVavvEQ~Et~~~~~~r~k~~~---~k~kvv~Rev~~ 433 (1122)
|++||+++|++|||++|+|++||||||+|+++.|+++||++|||||||||+|+|++++.|.+.++ +++++|+||||+
T Consensus 98 f~~DA~~~a~~L~i~lt~~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~r 177 (1022)
T 2o8b_B 98 YHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 177 (1022)
T ss_dssp EHHHHHHHHHHHCCCCCSSSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEE
T ss_pred ehhhHHHHHHhcCeEEecCCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998888877543 446899999999
Q ss_pred EeeCCccccccc---CCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCc
Q 001212 434 VVTKGTLTEGEL---LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPV 510 (1122)
Q Consensus 434 ViTpGTl~d~~~---l~~~~~~~yl~aI~e~~~~~~~~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~ 510 (1122)
||||||++|+.+ +. ...++||+||++.... ..+....|||||+|++||+|++++|.|+..+++|.+.|.+++|+
T Consensus 178 vvTpGT~~d~~~~~~l~-~~~~n~l~ai~~~~~~--~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~ 254 (1022)
T 2o8b_B 178 IITKGTQTYSVLEGDPS-ENYSKYLLSLKEKEED--SSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 254 (1022)
T ss_dssp EECTTSCCCCTTSCCCS-CSSCCEEEEEEEEECS--CC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEE
T ss_pred EECCCeeeccccccccc-CCCCcEEEEEEEcccc--ccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCc
Confidence 999999999874 43 3468999999974211 01123579999999999999999999998899999999999999
Q ss_pred EEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHH--HHHhhcccccccccccccccccccCCCCcccc
Q 001212 511 EIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK--NIYNRITAESLNKADSNVANSQAEGDGLTCLP 588 (1122)
Q Consensus 511 EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 588 (1122)
|||++.+..+..+.+.+.......+...+.+..+||+...+...+. .+|..... ......||
T Consensus 255 Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~----------------~~~~~~~~ 318 (1022)
T 2o8b_B 255 QVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLS----------------DGIGVMLP 318 (1022)
T ss_dssp EEEEETTTCCHHHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSC----------------CCC-CCCC
T ss_pred EEEecCCccchHHHHHHHhhhhhhhhhhcccchhhcchhhHHhhhhhhhhcccccc----------------cccchhhH
Confidence 9999988777766665543222222222235567898776665443 34432110 00113566
Q ss_pred hhhhhhhcc----C----CCchHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCC----------ccCCCCCceecC
Q 001212 589 GILSELIST----G----DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF----------GDMAKKPYMVLD 650 (1122)
Q Consensus 589 ~~l~~l~~~----~----~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~----------~~~~~~~~M~LD 650 (1122)
..+..+... + .+..++++|+|+||+||+.++++..++..++|..+..... ......+||.||
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD 398 (1022)
T 2o8b_B 319 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLD 398 (1022)
T ss_dssp HHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCC
T ss_pred HHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeC
Confidence 655443311 0 1246789999999999999988766655555544321110 013456899999
Q ss_pred HHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhhHHHHHHhcCCC
Q 001212 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1122)
Q Consensus 651 ~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~~lr~~Lk~l 730 (1122)
++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|++|||+|++|++ +..++..++..|+++
T Consensus 399 ~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~-~~~~~~~l~~~L~~i 477 (1022)
T 2o8b_B 399 AVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKL 477 (1022)
T ss_dssp HHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCccCCCCCCCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHhcC
Confidence 9999999999998888889999999999999999999999999999999999999999999996 677888999999999
Q ss_pred CcHHHHHHHHhccccc---cCCCCccchhhHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHhhhcC--
Q 001212 731 PDMERLLARLFASSEA---NGRNSNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTP-- 803 (1122)
Q Consensus 731 pDleRll~ri~~~~~~---~~~~~~~~~~~~~~--~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~-- 803 (1122)
|||||+++||+..+.. ..+...++++|++. ..+++.+|+..+.++..+..+...+........+.+|..+...
T Consensus 478 ~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~ 557 (1022)
T 2o8b_B 478 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557 (1022)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTT
T ss_pred ccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhc
Confidence 9999999999762211 01122345555542 5677888888876666555544444333334566777777532
Q ss_pred ---CCCchhHHHHHHHHHhhhchHhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCc
Q 001212 804 ---GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880 (1122)
Q Consensus 804 ---~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~~~~ 880 (1122)
...++++.+++..|..+||...+.+.|.+++++|++++||++++.+++++++|.++++++++.+++++++|++++++
T Consensus 558 ~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 637 (1022)
T 2o8b_B 558 KNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN 637 (1022)
T ss_dssp TSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGG
T ss_pred cccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 14678888999999999998766678888889999999999999999999999999999888899888999988889
Q ss_pred eEEEEecccccCC-CCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001212 881 LYLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959 (1122)
Q Consensus 881 ~y~ieV~~~~~~~-vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia 959 (1122)
+|+|+|+.....+ +|++|+..+++++..||+|+++++++.++..+++++...+.+++.++++.+.++...|..+++++|
T Consensus 638 ~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 638 RYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred eEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987776 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCC------CceEEEEE
Q 001212 960 ELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHG------NASFILLT 1033 (1122)
Q Consensus 960 ~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~------~~~~~IIT 1033 (1122)
+|||++|||.+|.....+||||+|++. .++.+.|.|++||||+++.. ...+.|||||+.|+... .+++++||
T Consensus 718 ~lD~l~s~A~~a~~~~~~~~~P~~~~~-~~~~~~l~i~~~rHP~l~~~-~~~~~~v~ndi~l~~~~~~~~~~~g~i~~It 795 (1022)
T 2o8b_B 718 VLDVLLCLANYSRGGDGPMCRPVILLP-EDTPPFLELKGSRHPCITKT-FFGDDFIPNDILIGCEEEEQENGKAYCVLVT 795 (1022)
T ss_dssp HHHHHHHHHHHTTCSSSCEECCEECCT-TTSCCCEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEE
T ss_pred HHHHHHhHHHHHhhccCCccCCccccC-CCCCceEEEEeccccEEEEE-ecCCceEeeeeeeccccccccCCCCcEEEEE
Confidence 999999999999843458999999842 11345799999999999853 22357999999997532 15899999
Q ss_pred ecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHH
Q 001212 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCR 1113 (1122)
Q Consensus 1034 GPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~ 1113 (1122)
||||||||||||++||+++|||+||||||+.+.++++|+||+|+|+.|++..|.||||+||.+++.|+..||+..++|+|
T Consensus 796 GpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 796 GPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVD 875 (1022)
T ss_dssp CCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975444444
Q ss_pred H
Q 001212 1114 Y 1114 (1122)
Q Consensus 1114 ~ 1114 (1122)
|
T Consensus 876 E 876 (1022)
T 2o8b_B 876 E 876 (1022)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=6.2e-123 Score=1169.21 Aligned_cols=718 Identities=27% Similarity=0.433 Sum_probs=557.7
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecC-CCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 001212 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-EQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1122)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g-~~p~~GfPe~sl~~y~~kLv~~GyKVav 403 (1122)
.++||||||||+||++|||+|||||||||||||++||+++|++|||+++.+ ++||||||+|+++.|++|||++||||||
T Consensus 11 ~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~~~~pmaGvP~ha~~~yl~rLv~~G~kVai 90 (918)
T 3thx_B 11 SIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGV 90 (918)
T ss_dssp TTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEETTEEEEEEEGGGHHHHHHHHHHHTCCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeecCCCeeEEeccHhHHHHHHHHHHHcCCcEEE
Confidence 479999999999999999999999999999999999999999999998765 6899999999999999999999999999
Q ss_pred EecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCccccccc---------------CCCCCCCcEEEEEEecCCCCCC-
Q 001212 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL---------------LSANPDASYLMALTESNQSPAS- 467 (1122)
Q Consensus 404 vEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~---------------l~~~~~~~yl~aI~e~~~~~~~- 467 (1122)
|||+|+|.+++. +++|+++|+|||||||||||++|+++ +.. ..+|||+||.+...+...
T Consensus 91 ~eQ~E~p~~k~~----~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~-~~~nyL~ai~~~~~~~~~~ 165 (918)
T 3thx_B 91 VKQTETAALKAI----GDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTD-TSTSYLLCISENKENVRDK 165 (918)
T ss_dssp EEECSCHHHHTT----STTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCT-TSCCCEEEEEEEC------
T ss_pred EeccCChhhhhc----ccccCCceeeeEEEEECCCcccccccccccccccccccccccCC-CCCcEEEEEEecccccccc
Confidence 999999986421 12455799999999999999999887 443 468999999975421100
Q ss_pred CCCCcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhc----C-CCccccccCC
Q 001212 468 QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT----R-NPLVNDLVPL 542 (1122)
Q Consensus 468 ~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~----~-~~~~~~~~~~ 542 (1122)
......|||||+|++||+|.+++|.|+..+++|.+.|.+++|+|||++.+ ++..+.+.+.... . ........+
T Consensus 166 ~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (918)
T 3thx_B 166 KKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMD- 243 (918)
T ss_dssp ---CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHHHHSSCSSSCCEEEEEC-
T ss_pred cccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecCC-cchHHHHHHHhhhcccccccceeEEecc-
Confidence 11234799999999999999999999988999999999999999999985 4554444333211 0 111111222
Q ss_pred ccccChhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccch
Q 001212 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622 (1122)
Q Consensus 543 ~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~ 622 (1122)
..+|+...+.+.|..+|..... .+++...+ ..+. .....+++|+|++|+||+.++++.
T Consensus 244 ~~~f~~~~a~~~l~~~f~~~~l---------------~~~g~~~~----~~~~---~~~~~~~~A~gall~Yl~~~~~~~ 301 (918)
T 3thx_B 244 NIYFEYSHAFQAVTEFYAKDTV---------------DIKGSQII----SGIV---NLEKPVICSLAAIIKYLKEFNLEK 301 (918)
T ss_dssp GGGTSHHHHHHHHHHHCC---------------------------------CC---CCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred ccccChhHHHHHHHHHhCcccc---------------ccccchhh----hhhh---cccHHHHHHHHHHHHHHHHhcccc
Confidence 3456777777777777753211 11111111 1111 123578999999999999988775
Q ss_pred hhhcccceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHH
Q 001212 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702 (1122)
Q Consensus 623 ~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I 702 (1122)
.+.+..+|..|. ...+||.||++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|
T Consensus 302 ~l~~~~~~~~~~-------~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I 374 (918)
T 3thx_B 302 MLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREI 374 (918)
T ss_dssp GGSCGGGEEESC-------CTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHH
T ss_pred cccccccceeec-------CCCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHH
Confidence 555556665441 2456999999999999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhH-HHHHH
Q 001212 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE-LMDQA 781 (1122)
Q Consensus 703 ~~R~daVe~L~~~~~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~~~~~ 781 (1122)
++|||+|++|+..+...+..++..|+++|||||+++|++.+. .+ .+++..+...|..+. .+...
T Consensus 375 ~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~-~~--------------~~dl~~l~~~l~~l~~~l~~~ 439 (918)
T 3thx_B 375 NARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKK-CS--------------TQEFFLIVKTLYHLKSEFQAI 439 (918)
T ss_dssp HHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTC-CC--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCc-CC--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975455678889999999999999999997542 11 234444444444332 11111
Q ss_pred HHHHHHHHhhcChhhHHhhhcCCCCchhHHHHHHHHHhhhchHhh--cCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHH
Q 001212 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859 (1122)
Q Consensus 782 ~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~--~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~ 859 (1122)
+..+.....+.+|..+.. .++.+...+..+.+.++.... ...+.++......++++..++.+++++.++.++
T Consensus 440 ---l~~~~~~~~~~lL~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 513 (918)
T 3thx_B 440 ---IPAVNSHIQSDLLRTVIL---EIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMH 513 (918)
T ss_dssp ---HHHHHHTCCCHHHHHHHT---HHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhhhhccCHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 111112234555555532 123332334445555553211 112223212123577888899999999999999
Q ss_pred HHHHHHHhcCCCceEEEecCceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 860 LKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1122)
Q Consensus 860 l~~~~~~l~~~~i~y~~~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~ 939 (1122)
+++.++.++..++.|+++.+.+|+|+|+.+...++|++|+.++++++..||+||+++++++++..+++++...++.++.+
T Consensus 514 l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~ 593 (918)
T 3thx_B 514 LQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLD 593 (918)
T ss_dssp HHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888899999988899999999888899999999999999999999999999999999999998888999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccce
Q 001212 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1122)
Q Consensus 940 l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi 1019 (1122)
++..+.++...|+.+++++|+|||++|||.+|.. .+||||+|++ ...|.|++||||+++......+.|||||+
T Consensus 594 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~-----~~~i~i~~~rHP~le~~~~~~~~~V~ndv 666 (918)
T 3thx_B 594 FLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQE-----ERKIVIKNGRHPVIDVLLGEQDQYVPNNT 666 (918)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCBCCEEES-----SCEEEEEEECCHHHHHHTCSCSSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCcccC-----CCcEEEEeccchhhhhhhccCCceecccc
Confidence 9999999999999999999999999999999985 4899999985 34799999999999852212357999999
Q ss_pred eeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHH
Q 001212 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1122)
Q Consensus 1020 ~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~ 1099 (1122)
.|+.. .+++++||||||||||||||++|++++|||+|+||||+.+.++++|+||+|||+.|++..|.||||+||.+++.
T Consensus 667 sl~~~-~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 667 DLSED-SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAE 745 (918)
T ss_dssp EECTT-SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHH
T ss_pred cccCC-CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHH
Confidence 99853 45899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccc
Q 001212 1100 MLVRFFCS 1107 (1122)
Q Consensus 1100 IL~~AT~s 1107 (1122)
|++.|++.
T Consensus 746 il~~a~~p 753 (918)
T 3thx_B 746 IIRKATSQ 753 (918)
T ss_dssp HHHHCCTT
T ss_pred HHHhccCC
Confidence 99999864
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=1.3e-116 Score=1104.60 Aligned_cols=679 Identities=25% Similarity=0.395 Sum_probs=555.6
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcC
Q 001212 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKG 398 (1122)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g------~~p~~GfPe~sl~~y~~kLv~~G 398 (1122)
.++||||||||+||++|||+|||||||||||||++||+++|++|+|++|++ ++||||||+|+++.|+++||++|
T Consensus 8 ~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G 87 (800)
T 1wb9_A 8 DAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQG 87 (800)
T ss_dssp GGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccccCCCCcCCccCCCHHHHHHHHHHHHHCC
Confidence 356999999999999999999999999999999999999999999999975 37999999999999999999999
Q ss_pred CeEEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccccCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEE
Q 001212 399 YRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICV 478 (1122)
Q Consensus 399 yKVavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yl~aI~e~~~~~~~~~~~~~~Gva~ 478 (1122)
||||||||+|+|... .++|+|+||+|+||||++|++++.. ..+|||+||.+.. ..||+||
T Consensus 88 ~kVai~eQ~e~~~~~----------k~~v~R~v~~v~TpGT~~~~~~l~~-~~~n~l~ai~~~~---------~~~Gla~ 147 (800)
T 1wb9_A 88 ESVAICEQIGDPATS----------KGPVERKVVRIVTPGTISDEALLQE-RQDNLLAAIWQDS---------KGFGYAT 147 (800)
T ss_dssp CCEEEEEECSCGGGC----------SSSCCEEEEEEECTTTCCCGGGSCT-TSCCCEEEEEECS---------SCEEEEE
T ss_pred CeEEEEEccCCcccc----------CCcceEEEEEEecCCcccccccccC-CCCcEEEEEEEcC---------CEEEEEE
Confidence 999999999999641 2699999999999999999988865 3689999999843 3699999
Q ss_pred EEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHH
Q 001212 479 VDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNI 558 (1122)
Q Consensus 479 vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 558 (1122)
+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+.. +... ...+.. .+ ..+|+...+.+.|.++
T Consensus 148 ~D~stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~~----l~~~--~~~~~~-~~-~~~f~~~~~~~~l~~~ 216 (800)
T 1wb9_A 148 LDISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEMS----LIEG--RRGLRR-RP-LWEFEIDTARQQLNLQ 216 (800)
T ss_dssp ECTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCGG----GTTT--CSSEEE-EC-GGGGCHHHHHHHHHHH
T ss_pred EECCCCEEEEEEecC---HHHHHHHHHhcCCeEEEEcCCCChHH----Hhhc--ccceEE-cc-ccccChhHHHHHHHHH
Confidence 999999999999987 78999999999999999998654321 1111 111221 23 3566777777777777
Q ss_pred HhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCC
Q 001212 559 YNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF 638 (1122)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~ 638 (1122)
|+..+ + .+++. .+..++++|+|++|.||+.++... +.++..+.
T Consensus 217 ~~~~~---l------------~~~~~--------------~~~~~~~~a~gall~Yl~~~~~~~-~~~~~~~~------- 259 (800)
T 1wb9_A 217 FGTRD---L------------VGFGV--------------ENAPRGLCAAGCLLQYAKDTQRTT-LPHIRSIT------- 259 (800)
T ss_dssp HTCSC---S------------GGGTC--------------TTCHHHHHHHHHHHHHHHHHHCSC-CTTCCCCE-------
T ss_pred hCccc---h------------hhccc--------------cCcHHHHHHHHHHHHHHHHhhhhc-cccccccE-------
Confidence 64211 0 00110 123578999999999999987652 33333332
Q ss_pred ccCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChh
Q 001212 639 GDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQP 718 (1122)
Q Consensus 639 ~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~ 718 (1122)
.+...++|.||.+|++||||+++.+ |+.+||||+++|+|+|+||+|+||+||++||+|++.|++|||+|++|+.
T Consensus 260 -~~~~~~~m~ld~~t~~~LEl~~~~~-~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---- 333 (800)
T 1wb9_A 260 -MEREQDSIIMDAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---- 333 (800)
T ss_dssp -ECCGGGBCEECHHHHHHTTSSSCTT-SCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG----
T ss_pred -EEccCCEEEecHHHHHhccCcccCC-CCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH----
Confidence 3345679999999999999999876 4457999999999999999999999999999999999999999999984
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHH
Q 001212 719 FALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLH 798 (1122)
Q Consensus 719 ~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~ 798 (1122)
+...++..|++++|++|+++|+..+. . ..+++..+..+|..+..+... +....++.|.
T Consensus 334 ~~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~L~ 391 (800)
T 1wb9_A 334 FTAGLQPVLRQVGDLERILARLALRT-A--------------RPRDLARMRHAFQQLPELRAQ-------LETVDSAPVQ 391 (800)
T ss_dssp GHHHHHHHHHTTCSHHHHHHHHHHTC-C--------------CHHHHHHHHHHHTTHHHHHHH-------HHSCCCHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHH
Confidence 67889999999999999999997531 1 134566666667665554433 2233445555
Q ss_pred hhhcCCCCchhHHHHHHHHHhhhchHh--hcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Q 001212 799 HILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVT 876 (1122)
Q Consensus 799 ~l~~~~~~~~~l~~~l~~i~~~~d~~~--~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~ 876 (1122)
.+... ++.+..+.+.|..+||.+. ...+|.++ ++|++++||++|+.++++++.+.+++++.++.++.+.++...
T Consensus 392 ~l~~~---l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~ 467 (800)
T 1wb9_A 392 ALREK---MGEFAELRDLLERAIIDTPPVLVRDGGVI-ASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGF 467 (800)
T ss_dssp HHHHH---HCCCHHHHHHHHHHBCSSCCSCSTTCCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred HHHHh---cccHHHHHHHHHHHhCcCchhhhhcCCee-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 55422 2344566667778887431 12344443 899999999999999999999999998888889988888777
Q ss_pred ecCceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001212 877 IGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVA 956 (1122)
Q Consensus 877 ~~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~ 956 (1122)
....||+|+|+....+++|.+|++.++.++..||+||+++++++++.++++++...+..++.+|...+.++.+.|..+++
T Consensus 468 ~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~ 547 (800)
T 1wb9_A 468 NAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSAS 547 (800)
T ss_dssp ETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred cCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecC
Q 001212 957 ATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPN 1036 (1122)
Q Consensus 957 ~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPN 1036 (1122)
++|+|||++|||.+|..+ +||||+|++ .+.|.|++||||+++.. + .+.|||||+.|+ ..+++++|||||
T Consensus 548 ~la~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~i~i~~~rHP~le~~-~-~~~~vlndisl~--~~g~i~~ItGpN 616 (800)
T 1wb9_A 548 ALAELDVLVNLAERAYTL--NYTCPTFID-----KPGIRITEGRHPVVEQV-L-NEPFIANPLNLS--PQRRMLIITGPN 616 (800)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCBCCEECS-----SSCEEEEEECCTTHHHH-C-SSCCCCEEEEEC--SSSCEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHhC--CCcccEECC-----CCCEEEEeccccEEEcc-C-CCceeeeccccc--CCCcEEEEECCC
Confidence 999999999999999865 799999975 45799999999999863 2 457999999998 346899999999
Q ss_pred CCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHH
Q 001212 1037 MGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRY 1114 (1122)
Q Consensus 1037 MgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~ 1114 (1122)
|||||||||++|++++|||+|+||||+.+.++++|+||+|+|+.|++..|.|||+.||.+++.||+.|++..++|+||
T Consensus 617 GsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDE 694 (800)
T 1wb9_A 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDE 694 (800)
T ss_dssp TSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred CCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999654333333
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1.3e-111 Score=1053.53 Aligned_cols=646 Identities=29% Similarity=0.399 Sum_probs=529.9
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhcceeeecC-----CCCcCCcCcccHhHHHHHHHHcCC
Q 001212 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPHCGFPERNFSMNVEKLARKGY 399 (1122)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~~~~g-----~~p~~GfPe~sl~~y~~kLv~~Gy 399 (1122)
.++||||||||+||++|||+|||||||||||||++||+++|++|||++|++ ++||||||+|+++.|+++||++||
T Consensus 11 ~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~ 90 (765)
T 1ewq_A 11 GPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGF 90 (765)
T ss_dssp SCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEeccCCCCCCCceecCcHHHHHHHHHHHHHCCC
Confidence 378999999999999999999999999999999999999999999999975 479999999999999999999999
Q ss_pred eEEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCcccccccCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEE
Q 001212 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479 (1122)
Q Consensus 400 KVavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yl~aI~e~~~~~~~~~~~~~~Gva~v 479 (1122)
|||||||+|+|... .++|+|+||+||||||++|++++ . ..+|||+||+ . ...||+||+
T Consensus 91 kVai~eQ~e~~~~~----------kg~v~R~v~~v~TpGT~~~~~~l-~-~~~n~l~ai~-~---------~~~~Gla~~ 148 (765)
T 1ewq_A 91 RLAVADQVEPAEEA----------EGLVRREVTQLLTPGTLLQESLL-P-REANYLAAIA-T---------GDGWGLAFL 148 (765)
T ss_dssp CEEEEEECSCGGGC----------SSSCCEEEEEEECGGGCCCGGGS-C-SSCCCEEEEE-E---------SSSEEEEEE
T ss_pred EEEEEecCCCcccc----------cCceeEEEEEEEcCceecchhhc-C-CCCcEEEEEE-e---------CCEEEEEEE
Confidence 99999999999741 15999999999999999999988 3 4789999998 2 135999999
Q ss_pred EcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHH
Q 001212 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559 (1122)
Q Consensus 480 D~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 559 (1122)
|++||+|++++|.|+ ++|.+.|.+++|+|||++.+. .. +.. .+..+...|
T Consensus 149 D~stg~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~-----~~-~~~---------------------~~~~~~~~f 198 (765)
T 1ewq_A 149 DVSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPEL-----LE-NGA---------------------FLDEFRKRF 198 (765)
T ss_dssp ETTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHH-----HH-CHH---------------------HHHHHHHHC
T ss_pred ECCCCEEEEEEecCH---HHHHHHHHhcCCeEEEecCCh-----HH-HHH---------------------Hhhhccccc
Confidence 999999999999875 689999999999999997531 00 000 000111111
Q ss_pred hhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCc
Q 001212 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639 (1122)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~ 639 (1122)
.. ..+ . ..++.. . ..+ ..+++|+|+++.||+.++... +. +..+ .
T Consensus 199 ~~---~~l-------~----~~~~~~----------~-~~~-~~~~~a~g~ll~Yl~~~~~~~-~~-~~~~--------~ 242 (765)
T 1ewq_A 199 PV---MLS-------E----APFEPE----------G-EGP-LALRRARGALLAYAQRTQGGA-LS-LQPF--------R 242 (765)
T ss_dssp CS---EEE-------C----CCCCCC----------S-SSC-HHHHHHHHHHHHHHHHHHTSC-CC-CCCC--------E
T ss_pred CH---HHH-------H----HHhccc----------c-cCC-HHHHHHHHHHHHHHHHhhhcc-cc-cCCc--------E
Confidence 11 000 0 001110 0 012 578999999999999987543 21 3233 2
Q ss_pred cCCCCCceecCHHHHHhcCCcccCCCCCCcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHcCChhh
Q 001212 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPF 719 (1122)
Q Consensus 640 ~~~~~~~M~LD~~Tl~nLEI~~n~~~g~~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~ 719 (1122)
.+...++|.||.+|++||||++|.+ | +||||++||+|+|+||+|+||+||++||+|++.|++|||+|++|.. +..+
T Consensus 243 ~~~~~~~m~lD~~t~~~LEl~~~~~-~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~-~~~~ 318 (765)
T 1ewq_A 243 FYDPGAFMRLPEATLRALEVFEPLR-G--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGAL 318 (765)
T ss_dssp ECCGGGSCBCCHHHHHHTTSSSCSS-S--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-CHHH
T ss_pred EECCCCeEEecHHHHHhCcCccCCC-c--cchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHh-CHHH
Confidence 3345679999999999999999875 4 7899999999999999999999999999999999999999999996 5667
Q ss_pred HHHHHHhcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcChhhHHh
Q 001212 720 ALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799 (1122)
Q Consensus 720 ~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~ 799 (1122)
+..++..|++++|++|++.|+..+. . ..+++..+..+|..+..+... +.
T Consensus 319 ~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~--------- 367 (765)
T 1ewq_A 319 REGVRRLLYRLADLERLATRLELGR-A--------------SPKDLGALRRSLQILPELRAL-------LG--------- 367 (765)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HC---------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HH---------
Confidence 8889999999999999999996531 1 123455555555443333221 11
Q ss_pred hhcCCCCchhHHHHHHHHHhhhchHh--hcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEe
Q 001212 800 ILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI 877 (1122)
Q Consensus 800 l~~~~~~~~~l~~~l~~i~~~~d~~~--~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~y~~~ 877 (1122)
+ ...++.+..+.+.|..+|+.+. ...+|.++ ++|++++||.+|+.++++++.|.++.+++++.++.+.++....
T Consensus 368 l---~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i-~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~ 443 (765)
T 1ewq_A 368 E---EVGLPDLSPLKEELEAALVEDPPLKVSEGGLI-REGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443 (765)
T ss_dssp T---TSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred H---HhccccHHHHHHHHHHHhcccchhhhccCCcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 1 1123345566666777877431 12334443 8999999999999999999999999988888888887777777
Q ss_pred cCceEEEEecccccCCCCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001212 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957 (1122)
Q Consensus 878 ~~~~y~ieV~~~~~~~vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ 957 (1122)
...||+|+|+....+++|++|++.++.++..||+||+++++++++.++++++...+..++.+|.+.+..+...|..+.++
T Consensus 444 ~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~ 523 (765)
T 1ewq_A 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARI 523 (765)
T ss_dssp TTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCC
Q 001212 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNM 1037 (1122)
Q Consensus 958 ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNM 1037 (1122)
+|+|||++|+|.+|..+ +||||+| . ..|.|+++|||+++. .+.|||||+.|+ +++++||||||
T Consensus 524 la~LD~l~s~a~~a~~~--~~~~P~~-~------~~i~i~~~rHP~le~----~~~~vl~disl~----g~i~~I~GpNG 586 (765)
T 1ewq_A 524 LAELDVYAALAEVAVRY--GYVRPRF-G------DRLQIRAGRHPVVER----RTEFVPNDLEMA----HELVLITGPNM 586 (765)
T ss_dssp HHHHHHHHHHHHHHHHH--TCBCCEE-S------SSEEEEEECCTTGGG----TSCCCCEEEEES----SCEEEEESCSS
T ss_pred HHHHHHHHhhHHHHHhC--Cceeecc-C------CcEEEEEeECceEcc----CCceEeeeccCC----CcEEEEECCCC
Confidence 99999999999999865 6999999 2 359999999999984 347999999997 36999999999
Q ss_pred CchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHHHHHhccccHHHHHHH
Q 001212 1038 GGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLVRFFCSLNQLCRY 1114 (1122)
Q Consensus 1038 gGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~IL~~AT~sl~~l~~~ 1114 (1122)
||||||||++|.+++|||+|+||||..+.++++|+||+++|+.|++..|.||||.||.+++.||+.|++..++|+||
T Consensus 587 sGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDE 663 (765)
T 1ewq_A 587 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDE 663 (765)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred CChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998654444444
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.3e-107 Score=1033.13 Aligned_cols=705 Identities=23% Similarity=0.314 Sum_probs=537.0
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEehhhHHHhhhhccee-----eecC----CCCcCCcCcccHhHHHHH-H
Q 001212 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-----YMKG----EQPHCGFPERNFSMNVEK-L 394 (1122)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffk~GkFYElf~~DA~i~ak~L~L~-----~~~g----~~p~~GfPe~sl~~y~~k-L 394 (1122)
.+.||||+|||++|++|+|||+||++|+|||+|++||+++|++|+++ ++++ ++|+|++|.++|+.|+++ |
T Consensus 14 ~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~L 93 (934)
T 3thx_A 14 AAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLL 93 (934)
T ss_dssp HHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999874 3333 468999999999999997 9
Q ss_pred HHcCCeEEEEecCCChHHHHHHhhhcCCCCCeeeeeEEEEeeCCccccc-ccCCCCCC---CcEEEEEEecCCCCCCCCC
Q 001212 395 ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG-ELLSANPD---ASYLMALTESNQSPASQST 470 (1122)
Q Consensus 395 v~~GyKVavvEQ~Et~~~~~~r~k~~~~k~kvv~Rev~~ViTpGTl~d~-~~l~~~~~---~~yl~aI~e~~~~~~~~~~ 470 (1122)
+.+||||+||||.+++.. .+.++|+|++++||||+++. ++|..+.+ ++||+||++... +.
T Consensus 94 l~~g~rVei~~q~~~~~~-----------~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~-----~~ 157 (934)
T 3thx_A 94 LVRQYRVEVYKNRAGNKA-----------SKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAV-----DG 157 (934)
T ss_dssp HTTCCEEEEEEECC---------------CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCS-----SS
T ss_pred HHcCCEEEEEecCCcccc-----------cCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeec-----CC
Confidence 999999999999776431 24689999999999999985 34432222 679999998532 23
Q ss_pred CcEEEEEEEEcCCCeEEEEEEcCcccHHHHHHHHHhcCCcEEEecCCCCChHHHHH--HHhhcCCCccccccCCccccCh
Q 001212 471 DRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERA--ILRHTRNPLVNDLVPLSEFWDA 548 (1122)
Q Consensus 471 ~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~~~~~--l~~~~~~~~~~~~~~~~~f~~~ 548 (1122)
...|||||+|++||+|.+++|.|+..+++|.+.|.+++|+|||++.+..+....++ +.... ...+ ...+. .+|+.
T Consensus 158 ~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~-~~f~~ 234 (934)
T 3thx_A 158 QRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRG-GILI-TERKK-ADFST 234 (934)
T ss_dssp SCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHHH-TCEE-EEECG-GGGCC
T ss_pred CcEEEEEEEECCCCeEEEEecCCchHHHHHHHHHHhCCCeEEEeeCCCCcccHHHHHHHHhhc-CceE-Eecch-hhcCH
Confidence 57899999999999999999999999999999999999999999987655433221 11111 1112 22232 34455
Q ss_pred hhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhccc
Q 001212 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1122)
Q Consensus 549 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~ 628 (1122)
..+.+.+.+++....... .....++.. +.+++++|+|+||+||+.++... ..+.
T Consensus 235 ~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~---------~~~~~~~a~gall~Yl~~~~~~~-~~~~- 288 (934)
T 3thx_A 235 KDIYQDLNRLLKGKKGEQ---------------MNSAVLPEM---------ENQVAVSSLSAVIKFLELLSDDS-NFGQ- 288 (934)
T ss_dssp SSHHHHHHHHBCCCTTSC---------------CCGGGCGGG---------GCHHHHHHHHHHHHHHTGGGCGG-GTTC-
T ss_pred HHHHHHHHHHhccccccc---------------ccccccccc---------ccHHHHHHHHHHHHHHHHhcCcc-cccc-
Confidence 556666666654221100 001122211 24689999999999999876542 2221
Q ss_pred ceeecCCCCCccCCCCCceecCHHHHHhcCCcccCCCCC-CcccHHhHhhhcCChHHHHHHHHhhhccCCCHHHHHHHHH
Q 001212 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD-SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQD 707 (1122)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~~g~-~~gSL~~~Ln~c~T~~GkRlLr~Wl~~PL~d~~~I~~R~d 707 (1122)
+. +..+...++|.||++|++||||++|.++++ ..||||++||+|+|+||+||||+||++||+|++.|++|||
T Consensus 289 -~~------~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d 361 (934)
T 3thx_A 289 -FE------LTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361 (934)
T ss_dssp -BE------EEECCGGGBCEECHHHHHHTTSCC---------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHH
T ss_pred -cc------ceEEcCCCeEEeCHHHHhhccccccCCCCCCCCCcHHHHhccCCCHHHHHHHHHHHhCcCCCHHHHHHHHH
Confidence 11 122345679999999999999999986644 3689999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHH-hcCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001212 708 AVAGLRGVNQPFALEFRK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (1122)
Q Consensus 708 aVe~L~~~~~~~~~~lr~-~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~ 786 (1122)
+|++|++ +..++..++. .|+++|||||+++|+..+. . ..+++..+..+|..+..+.+.+...
T Consensus 362 ~Ve~l~~-~~~~~~~l~~~~L~~i~DleRl~~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~l~~~- 424 (934)
T 3thx_A 362 LVEAFVE-DAELRQTLQEDLLRRFPDLNRLAKKFQRQA-A--------------NLQDCYRLYQGINQLPNVIQALEKH- 424 (934)
T ss_dssp HHHHHHS-CHHHHHHHHTTTGGGCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHTTHHHHHHHHHHT-
T ss_pred HHHHHhh-ChHHHHHHHHHHhcCCCCHHHHHHHHhcCC-C--------------CHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999996 6778888997 6999999999999997542 1 1234555566665555444332211
Q ss_pred HHHhhcChhhHHhh-hcC-CCCchhHHHHHHHHHhhhchHhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 787 AILENTESRQLHHI-LTP-GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864 (1122)
Q Consensus 787 ~~l~~~~s~~l~~l-~~~-~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~G~d~elD~~~~~~~~i~~~L~~~l~~~~ 864 (1122)
....+.++..+ +.. ...+..+..+.+.|..+||.... ++|..++++|+|++||++|+.+++++++|.+++++++
T Consensus 425 ---~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~-~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~ 500 (934)
T 3thx_A 425 ---EGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQV-ENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAA 500 (934)
T ss_dssp ---CCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGG-GTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchh-hcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00002222221 000 01123455666777888886543 5665667999999999999999999999999999988
Q ss_pred HHhcC---CCceEEEecCceEEEEecccccCC--CCCcEEEeeeecceEEEecchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001212 865 KLLGD---TSITYVTIGKDLYLLEVPESLRGS--VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1122)
Q Consensus 865 ~~l~~---~~i~y~~~~~~~y~ieV~~~~~~~--vp~~~~~~ss~k~~~rf~t~el~~l~~~l~~~~~~~~~~~~~il~~ 939 (1122)
+.++. .++++.+....||+|+|+...... .|.+|++++++++..||+|++++++++++.++++++...+.+++.+
T Consensus 501 ~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~ 580 (934)
T 3thx_A 501 RDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKE 580 (934)
T ss_dssp HHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875 467776667789999998653332 3688999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHhhhcCCCccceeeeCCCCCCCCeEEEeecCCCceecccCCCCceeccce
Q 001212 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1122)
Q Consensus 940 l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi 1019 (1122)
|...+.++.+.|..+++++|+||||+|||.+|.....+||||+|.+. +...|.|++||||+++.. ..+.|||||+
T Consensus 581 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~--~~~~~v~ndi 655 (934)
T 3thx_A 581 IVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQ--DEIAFIPNDV 655 (934)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC----CCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccC---CCcceEeecCccchhhhc--CCceeecccc
Confidence 99999999999999999999999999999999865568999999862 145799999999999852 2457999999
Q ss_pred eeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccCCcceEeeccCCccccccCCChHHHHHHHHHH
Q 001212 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1122)
Q Consensus 1020 ~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ivDrIfTRiGa~D~i~~g~STFmvEM~Eta~ 1099 (1122)
.|+.. .+++++||||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||+||.+++.
T Consensus 656 sl~~~-~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~ 734 (934)
T 3thx_A 656 YFEKD-KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 734 (934)
T ss_dssp EEETT-TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHH
T ss_pred eeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHH
Confidence 99853 45899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccH
Q 001212 1100 MLVRFFCSL 1108 (1122)
Q Consensus 1100 IL~~AT~sl 1108 (1122)
||+.|+...
T Consensus 735 il~~a~~~s 743 (934)
T 3thx_A 735 ILRSATKDS 743 (934)
T ss_dssp HHHHCCTTC
T ss_pred HHHhccCCc
Confidence 999999643
No 6
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.47 E-value=0.00015 Score=59.85 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=40.6
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcc
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~ 148 (1122)
-||-.|...||+|+.||++.|++++.....+.|.|-||..|.|.
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 48999999999999999999999999999999999889887764
No 7
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.44 E-value=0.00018 Score=59.44 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceEEEE
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~~~~ 157 (1122)
-||-.|...||+|+.||+++|++++....-+.|.|-||.+|.|. ..+|+-+
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~--~kDIKp~ 64 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK--ENDIKSG 64 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE--TTTEECC
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec--hhccccC
Confidence 48999999999999999999999999999999999888887664 4445433
No 8
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.18 E-value=0.0003 Score=65.49 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=39.8
Q ss_pred cCCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcc
Q 001212 101 YGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1122)
Q Consensus 101 ~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~ 148 (1122)
.|.+++|.||-..|+++..||.|+|+. +...++++|.+|||++-.|.
T Consensus 2 ~~~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 2 HMNSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp ---CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEEEEE
T ss_pred CCccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCeeEee
Confidence 468899999999999888999999999 58888999999999976554
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.16 E-value=0.00045 Score=58.62 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=40.9
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
..-||-+|...| .|..||+|+|++.+.. +.+.|.|+||..|.|...
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 456999999999 9999999999999998 579999999998887653
No 10
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.01 E-value=0.00087 Score=58.34 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=43.5
Q ss_pred CCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceEEEE
Q 001212 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~~~~ 157 (1122)
...-||.+|...|. |+.||.|+|++.+.. +...|.|+||..|.|.. .+++-+
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~--~~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKR--MHIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECG--GGEECC
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecH--HHCeeC
Confidence 45669999999999 999999999999876 67999999998777753 455544
No 11
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.96 E-value=0.00081 Score=59.44 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=40.6
Q ss_pred CCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhccc
Q 001212 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l 149 (1122)
....||.+|...| .|..||+|+|++.+.. +.+.|.|+||..|.|..
T Consensus 20 ~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~ 65 (85)
T 3qii_A 20 SEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKH 65 (85)
T ss_dssp -CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEG
T ss_pred cccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecH
Confidence 4566999999999 9999999999999998 57999999999887754
No 12
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.77 E-value=0.0016 Score=54.28 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=41.8
Q ss_pred ccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC-CcchhcccC
Q 001212 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1122)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~~~l~ 150 (1122)
.-+|..|...|..|+.||.|+|++.++..+...|.|.| |..|.+.++
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~ 51 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH
Confidence 34899999999999999999999999888899999976 998888765
No 13
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.64 E-value=0.0024 Score=53.31 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=42.1
Q ss_pred ccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
--||..|...| .|..||+|+|+..|...+...|+|.||..-|+..+
T Consensus 14 f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 14 FEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp SCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred ccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 34999999999 89999999999999999999999999998887654
No 14
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.64 E-value=0.0019 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=41.3
Q ss_pred cccCCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhccc
Q 001212 99 KSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1122)
Q Consensus 99 ~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l 149 (1122)
+..|.++||.||-..|.++.-||.|+|+.+ ...+++.|.+|||..-.|..
T Consensus 4 ~~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~ 53 (156)
T 1ssf_A 4 SSSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLG 53 (156)
T ss_dssp ----CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEET
T ss_pred CCCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeec
Confidence 344788999999999999999999999996 77778999999999776653
No 15
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.56 E-value=0.00038 Score=61.29 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=39.8
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
..-+|.+|...|. |+.||.|+|++.+.. +.+.|.|+||..|.|.+.
T Consensus 6 ~~kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 6 EFQINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 4458999999999 999999999999864 479999988999888765
No 16
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.30 E-value=0.0046 Score=52.36 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=42.3
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC-CcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~~~l~ 150 (1122)
..-+|..|...|..|+.||.++|++.+...+...|.|.| |..|.+.++
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 455899999999999999999999999988899999955 888887654
No 17
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.22 E-value=0.0055 Score=49.99 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=38.5
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEcc-CCcchhcccC
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYD-DGEDELLDLG 150 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dg~~e~~~l~ 150 (1122)
+|..|...|..|+.||.|+|.+.++..+...|.|. =|..|.+.++
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 49 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 49 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence 79999999999999999999999988888999995 4998888765
No 18
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.14 E-value=0.0024 Score=66.93 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=21.4
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+|+|+-.+. .+.++.|.|||++||||++|.++=+
T Consensus 9 ~~~~~~~~i~---~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 9 KPTARGQPAA---VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCCC---CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6888886554 3479999999999999999988643
No 19
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.13 E-value=0.0062 Score=54.84 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=41.9
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEcc-CCcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYD-DGEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dg~~e~~~l~ 150 (1122)
..-||..|...|..|+.||.|+|++.+...+...|.|. =|..|.|.++
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~ 58 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 58 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHH
Confidence 45589999999999999999999999998889999994 5888877665
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.86 E-value=0.0033 Score=67.65 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=24.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 20 ~L~~isl~i-~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 20 ALKNVNLNI-KEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEeeeEEE-cCCCEEEEECCCCCcHHHHHHHHh
Confidence 334555542 234689999999999999999884
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.85 E-value=0.0031 Score=67.27 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=24.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.+
T Consensus 19 ~l~~vsl~i~-~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 19 ILKGISLSVK-KGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEEEEEEEE-TTCEEEEEECTTSCHHHHHHHH
T ss_pred eEeeeEEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 4455555421 3468999999999999999987
No 22
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.75 E-value=0.0046 Score=64.16 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+|||++||||++|.++-
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999998754
No 23
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.69 E-value=0.0042 Score=63.94 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
++++|+|||++||||++|.++=
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998753
No 24
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=95.68 E-value=0.034 Score=47.43 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=40.1
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
-+|..|=+.|- |..||-|+|+..|....+..|.++||.+-|+..+
T Consensus 28 ~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 28 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 37788889995 8899999999999999999999999998887654
No 25
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=95.68 E-value=0.012 Score=51.82 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=42.2
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccC-CcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~~~l~ 150 (1122)
..-+|..|...|..|+.||.++|++.+...+...|.|-| |..|.|.++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~ 57 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 57 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH
Confidence 456899999999999999999999999877889999955 999888765
No 26
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.60 E-value=0.0055 Score=62.94 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.|+|||++||||+||.++=..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987554
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.59 E-value=0.0048 Score=67.53 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=24.7
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
|=+|+.+.-. .+.++.|.|||++||||+||.+
T Consensus 39 vL~~vsl~i~-~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 39 VLKGINVHIR-EGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp EEEEEEEEEC-TTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeeEEEEc-CCCEEEEEcCCCCcHHHHHHHH
Confidence 4455666432 3468999999999999999987
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.59 E-value=0.0048 Score=67.23 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=24.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+=+|+.+.- ..+.++.|.|||++||||+||.+
T Consensus 30 vl~~vsl~i-~~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 30 ILKGISFEI-EEGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp EEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeeEEEE-cCCcEEEEECCCCCCHHHHHHHH
Confidence 445555542 23468999999999999999987
No 29
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.58 E-value=0.0055 Score=66.09 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=23.5
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.- .. .++.|.|||++||||+||.++
T Consensus 16 ~~isl~i-~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 16 LNVDFEM-GR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEEEE-CS-SEEEEECCTTSSHHHHHHHHH
T ss_pred eeeEEEE-CC-EEEEEECCCCCCHHHHHHHHh
Confidence 4555543 24 689999999999999999874
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.57 E-value=0.0049 Score=67.40 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=24.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
|=+|+.+.- ..+.++.|.|||++||||+||.+
T Consensus 21 vl~~vsl~i-~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 21 VLKGVSLQA-RAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHH
Confidence 334555542 13468999999999999999987
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.57 E-value=0.004 Score=66.02 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=23.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.+
T Consensus 24 il~~vsl~i~-~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 24 VLERITMTIE-KGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp EEEEEEEEEE-TTCCEEEECCTTSSHHHHHHHH
T ss_pred EEeeeEEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 4445555421 2468999999999999999987
No 32
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.54 E-value=0.0046 Score=66.67 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=24.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 21 vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 21 AIKGIDLKV-PRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 334555542 134689999999999999999873
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.53 E-value=0.006 Score=66.90 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+=+|+.+.-. .+.++.|.|||++||||+||.++=
T Consensus 34 ~vl~~vsl~i~-~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 34 AILRGLSLDVH-PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEEEEC-TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeEEEEc-CCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455555422 346899999999999999998843
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.52 E-value=0.0053 Score=66.07 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=23.4
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 22 ~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 22 NGITFSI-PEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEEEE-CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeEEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444432 134689999999999999999884
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.50 E-value=0.0047 Score=68.01 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.+
T Consensus 23 ~L~~isl~i~-~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 23 ALKGINMNIK-RGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEEEEEEEE-TTSEEEEECCTTSSHHHHHHHH
T ss_pred EEEeeEEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 4556666422 3468999999999999999988
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.49 E-value=0.0049 Score=66.87 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999874
No 37
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.47 E-value=0.0069 Score=65.27 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=21.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+=+|+.+.-. .+.++.|||||++||||++|.++-.
T Consensus 13 ~~l~~isl~i~-~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 13 LGTENLYFQSM-RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ----------C-CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeecceeccCC-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34455666532 3468999999999999999987543
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.47 E-value=0.0056 Score=67.11 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=23.4
Q ss_pred ccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1016 PNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
=+|+.+.- ..+.++.|+|||++||||+||.+
T Consensus 23 l~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 23 LENVSLVI-NEGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp EEEEEEEE-CTTCEEEEECSTTSSHHHHHHHH
T ss_pred eeeeEEEE-cCCCEEEEECCCCCcHHHHHHHH
Confidence 34455532 13468999999999999999987
No 39
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.47 E-value=0.0076 Score=60.67 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=26.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+-+++.+.- ..+.++.|.|||++||||++|.++=+.
T Consensus 22 ~l~~vsl~i-~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHT-EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCC-SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcccccc-CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444554442 234689999999999999999887654
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.47 E-value=0.0059 Score=66.27 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=24.8
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
|=+|+.+.- ..+.++.|+|||++||||+||.++=
T Consensus 18 vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 18 ILKGVNLVV-PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334555532 1346899999999999999998853
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.46 E-value=0.0052 Score=65.79 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=24.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 23 il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 23 VLKDINFKI-ERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp SEEEEEEEE-ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 334455532 134689999999999999999873
No 42
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.44 E-value=0.006 Score=65.88 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999884
No 43
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.41 E-value=0.0099 Score=63.52 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
+.+++|.|||++||||++|+++...+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999985444
No 44
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.41 E-value=0.0066 Score=61.65 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.5
Q ss_pred ceEEEEEecCCCchHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQ 1046 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRq 1046 (1122)
+.+++|.|||++||||++|+
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 46999999999999999996
No 45
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.38 E-value=0.0052 Score=67.00 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=24.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=+|+.+.- ..+.++.|.|||++||||+||.++
T Consensus 22 vl~~vsl~i-~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 22 ALDGVSISV-NKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECCEE-ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHh
Confidence 344555532 134689999999999999999873
No 46
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.36 E-value=0.0085 Score=61.42 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+|||++||||++|.++-
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998753
No 47
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.36 E-value=0.0064 Score=66.82 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=25.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 34 vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 34 VLQGLTFTL-YPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeEeeEEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555542 234689999999999999999884
No 48
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.36 E-value=0.0058 Score=66.20 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 24 vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 24 ILDNINLSI-KQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555542 134689999999999999999884
No 49
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.35 E-value=0.0058 Score=67.46 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.+
T Consensus 36 vL~~isl~i~-~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 36 ILKKISWQIA-KGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEEEEEEEE-TTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeeeEEEc-CCCEEEEECCCCCcHHHHHHHH
Confidence 4455665421 3468999999999999999987
No 50
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.33 E-value=0.0087 Score=60.95 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|+.++.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999987754
No 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.30 E-value=0.0061 Score=66.28 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=24.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 20 vl~~isl~i~-~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 20 LFQQLNFDLN-KGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEEEEEEE-TTCEEEEECCSSSSHHHHHHHHT
T ss_pred EEEEEEEEEC-CCCEEEEECCCCCCHHHHHHHHh
Confidence 3345555321 24689999999999999999874
No 52
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.28 E-value=0.022 Score=50.03 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=42.1
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~ 150 (1122)
..-+|..|...|..|+.||.|+|++.+...+...|.| |=|..|.+.++
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 4559999999999999999999999998888899999 55998887754
No 53
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.28 E-value=0.0063 Score=66.67 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=25.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 25 ~vL~~vsl~i~-~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 25 ALINDVSLHIA-SGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEEEEEEEE-TTCEEEEECCTTSCHHHHHHHHT
T ss_pred eEEEeeEEEEc-CCCEEEEECCCCCcHHHHHHHHh
Confidence 34455555421 34689999999999999999984
No 54
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.25 E-value=0.0085 Score=68.34 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=26.3
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+=+|+.|.-. .+.++.|.|||++||||+||.++=
T Consensus 18 ~~L~~vsl~i~-~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 18 PVLNDISLSLD-PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEEEEEC-TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEeeEEEEc-CCCEEEEECCCCchHHHHHHHHhc
Confidence 34455666432 346999999999999999999853
No 55
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.14 E-value=0.0083 Score=65.50 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 35 vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 35 TLKSINFFI-PSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp SEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeEeeEEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 334455542 134689999999999999999985
No 56
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.09 E-value=0.011 Score=61.73 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||++|.++-.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999987654
No 57
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.07 E-value=0.01 Score=60.87 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|+|||++||||++|.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 578999999999999999986
No 58
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.0089 Score=65.36 Aligned_cols=20 Identities=45% Similarity=0.810 Sum_probs=18.9
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
.++.|+|||++||||+||.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999988
No 59
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.02 E-value=0.0097 Score=63.00 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|.|||++||||++|.++=
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998754
No 60
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.01 E-value=0.011 Score=62.75 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|+|||++||||++|.++
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999864
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.98 E-value=0.0098 Score=62.66 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
.++.|.|||++||||+||.++-+ -..-|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I 52 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQV 52 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH--HHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCcCCee
Confidence 57899999999999999999876 4455544
No 62
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.98 E-value=0.01 Score=65.89 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999873
No 63
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.97 E-value=0.0082 Score=63.91 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=16.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||++|.++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 64
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=94.97 E-value=0.037 Score=44.83 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=39.6
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
+|..|=+.|- |..||.|+|+..|....+..|+++||.+-|+.++
T Consensus 6 ~GedVLarws-DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 6 EGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEec-CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 6888999997 5899999999999999999999999998887654
No 65
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.95 E-value=0.011 Score=67.42 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++=
T Consensus 18 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 18 AVDGVSFEVK-DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEEEEEC-TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEeeeEEEEc-CCCEEEEEcCCCchHHHHHHHHHC
Confidence 3455555422 346899999999999999999853
No 66
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.91 E-value=0.013 Score=61.02 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+|||++||||++|.++-
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 67
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.90 E-value=0.011 Score=61.71 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++++|.|||++||||++|.++=
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999998743
No 68
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.88 E-value=0.011 Score=67.42 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=24.4
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 30 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 30 SVRGVSFQIR-EGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEEEEEE-TTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEeeeEEEEC-CCCEEEEECCCCCcHHHHHHHHh
Confidence 3345555421 34689999999999999999884
No 69
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.87 E-value=0.0098 Score=67.66 Aligned_cols=33 Identities=15% Similarity=0.459 Sum_probs=25.3
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 15 ~l~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 15 SLDNLSLKVE-SGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEEEEEEC-TTCEEEEECCCTHHHHHHHHHHH
T ss_pred EEeeeEEEEc-CCCEEEEECCCCccHHHHHHHHH
Confidence 4455666432 34689999999999999999884
No 70
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.87 E-value=0.012 Score=67.24 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=24.9
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 18 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 18 ALNNINLKIK-DGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEEEEEEC-TTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeeEEEEC-CCCEEEEECCCCchHHHHHHHHh
Confidence 3455555422 34689999999999999999884
No 71
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.86 E-value=0.012 Score=67.47 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=25.6
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.|.-. .+.++.|.|||++||||+||.++
T Consensus 26 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 26 AVNKLNLTIK-DGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEEEEEEC-TTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEeeeEEEEC-CCCEEEEECCCCChHHHHHHHHH
Confidence 4456666532 34689999999999999999885
No 72
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.85 E-value=0.012 Score=67.50 Aligned_cols=33 Identities=42% Similarity=0.738 Sum_probs=25.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.|.-. .+.++.|.|||++||||+||.++
T Consensus 18 ~L~~vsl~i~-~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 18 VSKDINLDIH-EGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEEEEEEC-TTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEeeeEEEEC-CCCEEEEEcCCCchHHHHHHHHH
Confidence 4455655432 34699999999999999999984
No 73
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.84 E-value=0.017 Score=57.32 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|..++++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 74
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.77 E-value=0.015 Score=61.21 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..++.|.|||++||||++++++-..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997644
No 75
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.76 E-value=0.015 Score=60.86 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||++|.++-+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999987654
No 76
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.67 E-value=0.015 Score=66.50 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=26.1
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.|.- ..+.++.|.|||++||||+||.++
T Consensus 43 aL~~vsl~i-~~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 43 ALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeeEEEE-cCCCEEEEEcCCCchHHHHHHHHh
Confidence 456666653 235799999999999999999885
No 77
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.65 E-value=0.013 Score=67.18 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=24.7
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 18 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 18 AVREMSLEVK-DGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEEEEEEE-TTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEeeeEEEEc-CCCEEEEECCCCcHHHHHHHHHH
Confidence 3445555421 34689999999999999999884
No 78
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.63 E-value=0.014 Score=58.71 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|||||++||||++|.++-
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998764
No 79
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.62 E-value=0.016 Score=59.20 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++++|+|||++||||+++.++-
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998643
No 80
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.60 E-value=0.01 Score=67.67 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.7
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||+||.++
T Consensus 20 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 20 ALDNVNINIE-NGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEEEEEEEC-TTCEEEEECSCHHHHHHHHHHHH
T ss_pred eEeceEEEEC-CCCEEEEECCCCCcHHHHHHHHh
Confidence 3345555421 34689999999999999999884
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.42 E-value=0.02 Score=62.51 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..+++|+|||++||||+|+.++=.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 468999999999999999987654
No 82
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.40 E-value=0.019 Score=60.37 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
+.+++|+|||++||||++++++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999986554
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.30 E-value=0.02 Score=66.02 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=26.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+=+|+.|.- ..+.++.|.|||++||||+||.++=
T Consensus 35 ~~L~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 35 AILENISFSI-SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CSEEEEEEEE-CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEeeceeEEE-cCCCEEEEECCCCChHHHHHHHHhC
Confidence 3445566643 2347999999999999999999864
No 84
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.27 E-value=0.022 Score=58.99 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|+|||++||||++|.++
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999864
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.23 E-value=0.019 Score=59.49 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=22.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcC
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1122)
++.|+|||++||||+++.++-..- .-|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~--~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK--SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH--HTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcc--cCC
Confidence 688999999999999999876643 446
No 86
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.22 E-value=0.033 Score=58.27 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
.+.+|+|||++||||+|..++++..-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 58999999999999999998876653
No 87
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.21 E-value=0.024 Score=57.21 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+++|+|||++||||++|.++-
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 88
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.11 E-value=0.024 Score=59.30 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+++++|+|||++||||+++.++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHH
Confidence 4789999999999999999764
No 89
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.06 E-value=0.024 Score=60.93 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|.|||++||||++|.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 90
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=94.03 E-value=0.12 Score=43.41 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=36.9
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
.--+|..|=+.|- |..||-|+|++ ....+..|+++|..+-|+.++
T Consensus 15 ~~~~geDVL~rw~-DG~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 15 TYALQEDVFIKCN-DGRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred ccccCCeEEEEec-CCCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 3347888889997 58999999965 668889999999998888764
No 91
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.03 E-value=0.033 Score=63.82 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|||||++||||+|..|+.+.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999988765
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.01 E-value=0.033 Score=61.04 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=26.0
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
-|.-+++-...++++|+|||++||||++++++..+
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34334322234799999999999999999999743
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.98 E-value=0.022 Score=57.93 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
++.++|+|||++||||+++.++-..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.93 E-value=0.023 Score=68.40 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=27.1
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1122)
+|+.+|+-....+++|.|||++||||+++++++.-++.
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 34555322235799999999999999999976554443
No 95
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.83 E-value=0.032 Score=57.87 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+++|+|||++||||++|.++-..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999986553
No 96
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.76 E-value=0.042 Score=61.55 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||++|.++-+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 468999999999999999987654
No 97
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.72 E-value=0.028 Score=63.08 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|||||++||||+||.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 589999999999999999864
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.55 E-value=0.031 Score=63.75 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+|||++||||+|+.++-
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999998643
No 99
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.48 E-value=0.039 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+|||++||||++|.++-+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999977543
No 100
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.42 E-value=0.025 Score=63.14 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=25.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.|=+|+.|.-. .+.++.|.|||++||||+||.++
T Consensus 68 ~vL~~isl~i~-~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 68 ETLQDVSFTVM-PGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEEEEEEEC-TTCEEEEESSSCHHHHHHHHHHT
T ss_pred ceeeeeeEEEc-CCCEEEEECCCCchHHHHHHHHH
Confidence 45556666432 34689999999999999999873
No 101
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.42 E-value=0.043 Score=60.63 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
.+.+++|.|||++|||||+++++.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999876543
No 102
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.23 E-value=0.042 Score=56.89 Aligned_cols=21 Identities=38% Similarity=0.176 Sum_probs=18.7
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++|||||++||||++|.++-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999998754
No 103
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.23 E-value=0.024 Score=65.83 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.+|+|||++||||+|+.++++.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999987764
No 104
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.20 E-value=0.042 Score=64.08 Aligned_cols=23 Identities=43% Similarity=0.483 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+++|+|||++||||+|+.++-
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998643
No 105
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.12 E-value=0.034 Score=62.02 Aligned_cols=45 Identities=18% Similarity=0.075 Sum_probs=29.6
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
+++.+.- ..+.++.|.|||++||||++|.++=+. =.+|=+|||-.
T Consensus 117 ~~vsl~i-~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~ 161 (305)
T 2v9p_A 117 KLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHK 161 (305)
T ss_dssp HHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTT
T ss_pred ccceEEe-cCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCc
Confidence 3444442 234689999999999999999987654 11122356654
No 106
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.09 E-value=0.045 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++.|||||++||||+.|.++-
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999997753
No 107
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.79 E-value=0.053 Score=65.32 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=26.7
Q ss_pred eeccceeeCC---CCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGG---HGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~---~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
|=||.+.|-+ ...+.++.|.|||++||||+||.++
T Consensus 9 ~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 9 YKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp SSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHh
Confidence 5566666621 1235799999999999999999884
No 108
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.79 E-value=0.062 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++.|+|||++||||+++.++-
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.75 E-value=0.047 Score=54.16 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=26.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC---CcccCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAE 1063 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~ 1063 (1122)
...++|+|||++||||+++.++-...- -| .|+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHH
Confidence 357999999999999999998875542 35 355554
No 110
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.72 E-value=0.067 Score=61.32 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
.+.+|||||++||||+|-.|+++.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998554
No 111
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=92.64 E-value=0.14 Score=46.66 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=39.7
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccC
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~ 150 (1122)
..-+|.-|-+.|+.|+.||.|.|.+... .+...|.| |=|..|.+.++
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~ 74 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLK 74 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHH
Confidence 4458999999999999999999999974 45678888 88999888754
No 112
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.64 E-value=0.067 Score=63.30 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.++.|.|||++||||+||.++-+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999887553
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.58 E-value=0.061 Score=55.68 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=21.1
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+.=+|+.+.-. ...+++|+||+++||||+.|.++-
T Consensus 12 ~~~~~~~~~~~~-~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 12 DLGTENLYFQSN-AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCceeEecC-CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 466677777532 346899999999999999999873
No 114
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.54 E-value=0.18 Score=41.92 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=40.2
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
-+|..|=+.|- |..||.|+|+..|.......|.+.|+..-|+..+
T Consensus 11 ~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 11 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred ccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 37889999997 6999999999999999999999999998887654
No 115
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.48 E-value=0.059 Score=59.04 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
.+.|.|||++||||+||.++-...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 367999999999999999886553
No 116
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.46 E-value=0.074 Score=60.15 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|..|+...
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987654
No 117
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.34 E-value=0.084 Score=62.41 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||+|+.++-+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 478999999999999999998754
No 118
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.34 E-value=0.057 Score=55.89 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||+++||||+.|.++-
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998754
No 119
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.30 E-value=0.073 Score=53.94 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
+.+++|||++++||||++|.++-. |..-|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~--l~~~g~~ 35 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY--LVCHGIP 35 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HhhCCCc
Confidence 468999999999999999987653 3334643
No 120
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.30 E-value=0.067 Score=57.82 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..++.|+|||++||||++|.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.23 E-value=0.052 Score=57.58 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
..+++|+|||++||||++++++..+++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 50 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQL 50 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhC
Confidence 468999999999999999999876554
No 122
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.18 E-value=0.057 Score=68.93 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=25.6
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+=+|+.+.- ..+.++.|+|||++||||+||.++
T Consensus 449 ~iL~~vsl~I-~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 449 ILLNKTQLRL-KRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EeEecceEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445555542 134689999999999999999997
No 123
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.14 E-value=0.076 Score=59.15 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++.|.|||++||||+++.+|-..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987653
No 124
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.08 E-value=0.078 Score=55.25 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+++++|.||+++||||+++.++
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHH
Confidence 4789999999999999999764
No 125
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.06 E-value=0.069 Score=64.38 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 126
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.00 E-value=0.17 Score=44.79 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=45.9
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceEEEE
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~~~~ 157 (1122)
.+=+|.-|.+..++|+.||.|.|..-++.++-|.+.||=|.+|.+.... ++=|
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~--LR~L 73 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC--LRKL 73 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT--EEEC
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc--cccC
Confidence 3448889999999999999999999999999999999999999998653 5544
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.97 E-value=0.075 Score=61.00 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..+++|+|||++||||+|+.++-.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999987654
No 128
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.91 E-value=0.18 Score=41.26 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=40.3
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccC
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~ 150 (1122)
-+|..|=+.|- |..||.|+|+..|....+..|.+.|+.+-|+..+
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 38889999996 8899999999999999999999999998887654
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.89 E-value=0.069 Score=61.03 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.2
Q ss_pred ceEEEEEecCCCchHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqv 1047 (1122)
+.+++|+|||++||||+|+.+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l 195 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKAL 195 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999987
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.88 E-value=0.092 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
...+++|+|||++||||++++++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 131
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.071 Score=62.91 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++.|.|||++||||+||.++=+.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999986553
No 132
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.76 E-value=0.058 Score=60.90 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=24.2
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++.+.- ..+.+++|+|||++||||+||.++
T Consensus 160 ~l~~l~~~i-~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 160 AISAIKDGI-AIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHHHHHH-HHTCCEEEEESTTSCHHHHHHHGG
T ss_pred HHhhhhhhc-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 455555532 123579999999999999999873
No 133
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.72 E-value=0.084 Score=55.46 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.||||+++||||++|.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999875
No 134
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.64 E-value=0.066 Score=60.09 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.+|+|||++||||+|..++.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 8999999999999999998775
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.61 E-value=0.11 Score=59.38 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|+|||++||||+|+.++.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHhc
Confidence 389999999999999999998764
No 136
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.56 E-value=0.062 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++.|.|||++||||++|.++-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999987543
No 137
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.53 E-value=0.083 Score=64.53 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999884
No 138
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.51 E-value=0.094 Score=58.46 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||+++.+|-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999998854
No 139
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.44 E-value=0.099 Score=58.91 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++.|.|||++||||+++.+|-.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998864
No 140
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.44 E-value=0.094 Score=61.31 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.+.+|+|||++||||+|+.++.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3689999999999999999998765
No 141
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.41 E-value=0.087 Score=60.18 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=24.9
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHH
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+||-.+.=- -...+.|+|||++||||++|.++=+
T Consensus 159 ~~v~~~v~~~---lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 159 KFIPKEARPF---FAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGSCTTTGGG---TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhCCHHHHHh---hhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566655320 0246899999999999999987543
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.38 E-value=0.11 Score=59.11 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++.|.|||++||||+++.+|-..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999987653
No 143
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.33 E-value=0.091 Score=63.35 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|+|||++||||+||.++
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999884
No 144
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.097 Score=63.91 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 4699999999999999999874
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.15 E-value=0.12 Score=57.95 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++.|+|||++||||++|.++-
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998643
No 146
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.02 E-value=0.14 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
+.+++|+|||++||||++.|++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887664
No 147
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.86 E-value=0.095 Score=64.05 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 4689999999999999999883
No 148
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.81 E-value=0.13 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++.||||+++||||+++.++-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999997643
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.74 E-value=0.11 Score=57.08 Aligned_cols=20 Identities=40% Similarity=0.595 Sum_probs=18.5
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|.|||++||||++|.+|-
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998864
No 150
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.61 E-value=0.12 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+++++|+||+++||||+++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999864
No 151
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.58 E-value=0.098 Score=62.56 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.1
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
..++|+|||++||||+|+.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999975
No 152
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.56 E-value=0.13 Score=58.48 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..+++.|.|||++||||++++++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34799999999999999999998764
No 153
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.48 E-value=0.13 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|+||+++||||+.+.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999876
No 154
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.40 E-value=0.11 Score=62.60 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++.|.|||++||||+||.++
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999883
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.38 E-value=0.13 Score=55.50 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||+++||||+.+++|-
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998863
No 156
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.32 E-value=0.14 Score=57.81 Aligned_cols=24 Identities=29% Similarity=0.148 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..++.|+|||++||||+|+.++-.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998643
No 157
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.23 E-value=0.13 Score=62.69 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.7
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.- ..+.++.|.|||++||||++|.++
T Consensus 358 ~l~~i~l~i-~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 358 ALSHVSFSI-PQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred ccccceEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 444555542 234689999999999999999873
No 158
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=90.22 E-value=0.19 Score=47.08 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=42.3
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccCcceEEEE
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~~e~~~~~ 157 (1122)
..-+|.-|-+.|..|+.||.|.|++.++. +...|.| |=|..|.+.++ +++-+
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~--~Lr~l 84 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLK--DLRAL 84 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGG--GCEEC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehH--HhhcC
Confidence 34588899999999999999999999874 5677888 88999988764 45555
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.22 E-value=0.057 Score=57.57 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.++.|+|||++||||+|+.++-+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999998764
No 160
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.17 E-value=0.13 Score=62.75 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.2
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.|.|||++||||+||.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 579999999999999999884
No 161
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.07 E-value=0.15 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.7
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|+||.++||||+.+.++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999865
No 162
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.06 E-value=0.16 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||.++||||+.+.++-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999998764
No 163
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.91 E-value=0.17 Score=51.47 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+.+++|+|++++||||++|.++-. |..-|.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~--l~~~~~ 42 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL--LQKEGY 42 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHhcCC
Confidence 468999999999999999987653 344453
No 164
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.81 E-value=0.13 Score=62.49 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.0
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
|=+|+.+.-. .+.++.|.|||++||||++|.+
T Consensus 358 ~l~~v~~~i~-~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 358 ALRNINLKIP-AGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp SEEEEEEEEC-TTCEEEEEECTTSSHHHHHHHH
T ss_pred cccceeEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 3345555421 3468999999999999999987
No 165
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.75 E-value=0.28 Score=59.58 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=24.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.+=+|+.+.-. .+.++.|+|||++||||++|.+
T Consensus 355 ~~l~~isl~i~-~G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 355 PILKDINLSIE-KGETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp CSEEEEEEEEC-TTCEEEEECSTTSSHHHHHTTT
T ss_pred cceeeeEEEEC-CCCEEEEECCCCChHHHHHHHH
Confidence 34456666432 3468999999999999999976
No 166
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.66 E-value=0.12 Score=63.15 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=25.5
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.|=+|+.+.-. .+.++.|.|||++||||++|.+
T Consensus 358 ~vl~~isl~i~-~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 358 PIFQDFSLSIP-SGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp EEEEEEEEEEC-TTCEEEEECCTTSSSTHHHHHH
T ss_pred ccccceEEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 35556666532 3468999999999999999987
No 167
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.58 E-value=0.15 Score=62.34 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=25.7
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
.+=+|+.+.-. .+.++.|.|||++||||++|.+
T Consensus 369 ~~l~~isl~i~-~G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 369 PVLKDITFHIK-PGQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp CSCCSEEEECC-TTCEEEEECCTTSSTTHHHHHH
T ss_pred ccccceEEEEc-CCCEEEEECCCCCcHHHHHHHH
Confidence 34456666532 3578999999999999999987
No 168
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.57 E-value=0.088 Score=67.26 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=23.6
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+|+.+.-. .+.++.|+|||++||||+||.++
T Consensus 690 ~dVSl~I~-~GeivaIiGpNGSGKSTLLklLa 720 (986)
T 2iw3_A 690 TDINFQCS-LSSRIAVIGPNGAGKSTLINVLT 720 (986)
T ss_dssp EEEEEEEE-TTCEEEECSCCCHHHHHHHHHHT
T ss_pred eccEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 45555321 24689999999999999999984
No 169
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.56 E-value=0.16 Score=58.92 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
++.|.|||++||||+||.++
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 78999999999999999874
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.52 E-value=0.16 Score=54.60 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=18.6
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|+|||++||||++|.+|-
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998874
No 171
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.48 E-value=0.18 Score=57.27 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||+||+++=.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988655
No 172
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.45 E-value=0.14 Score=63.49 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=31.0
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHH
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+.+.+.+.+.+.. -|+.+. ...++.|+|||++||||+|+.+..
T Consensus 326 ~~~~~~~~~~~~L~~----------vsl~I~---~Ge~vaIiGpnGsGKSTLl~~i~~ 370 (670)
T 3ux8_A 326 RWLEVVGAREHNLKN----------VSVKIP---LGTFVAVTGVSGSGKSTLVNEVLY 370 (670)
T ss_dssp CEEEEEEECSTTCCS----------EEEEEE---TTSEEEEECSTTSSHHHHHTTTHH
T ss_pred cceeecCcccccccc----------ceeEec---CCCEEEEEeeCCCCHHHHHHHHHH
Confidence 467777766665432 123333 246899999999999999997643
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.43 E-value=0.15 Score=57.46 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..++|+|||++||||++|.+|-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998754
No 174
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.27 E-value=0.28 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+++++|+|||++||||+++.+|-.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 478999999999999999988754
No 175
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.19 E-value=0.19 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++++|.|||++||||++|.++-
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999884
No 176
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.06 E-value=0.22 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
.+++|+||.++||||+.+.+ .+.|..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L------~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL------KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH------HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH------HHCCCc
Confidence 47899999999999999966 566754
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.03 E-value=0.33 Score=54.46 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
.+++++|+|||++||||+++.+|. .+++-|-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCC
Confidence 357899999999999999998775 4556564
No 178
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.97 E-value=0.18 Score=58.65 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.6
Q ss_pred ceE--EEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASF--ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~--~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.+ +.|.|||++||||||+.++-.
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 356 889999999999999998654
No 179
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.92 E-value=0.18 Score=50.71 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++|+||+++||||+.|.++-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999863
No 180
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.92 E-value=0.2 Score=55.73 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+..|.|||++||||+|+.++
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999987
No 181
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.83 E-value=0.16 Score=58.82 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
..+++|+|||++|||||++|+|+.+.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 468999999999999999999877654
No 182
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=88.75 E-value=0.34 Score=61.74 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=37.1
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcC
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1122)
..+.+++.+++.+.. -|+.+. .+.++.|||||++||||+++.+..-.++..++
T Consensus 588 ~~l~v~~~~~~~Lk~----------Vsl~I~---~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~ 640 (916)
T 3pih_A 588 ASLKIKGVRHNNLKN----------IDVEIP---LGVFVCVTGVSGSGKSSLVMETLYPALMNLLH 640 (916)
T ss_dssp SEEEEEEECSTTCCS----------EEEEEE---SSSEEEEECSTTSSHHHHHHHTHHHHHHHHHH
T ss_pred ceEEEeeeccccccc----------cceEEc---CCcEEEEEccCCCChhhhHHHHHHHHHHHHhc
Confidence 468888888766532 123333 23589999999999999998776666665553
No 183
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.68 E-value=0.27 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+||+++||||+++.++-
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999998764
No 184
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.55 E-value=0.25 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|+||.++||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 185
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.33 E-value=0.21 Score=54.50 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
++|.|||++||||++|.+|-.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999988753
No 186
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.14 E-value=0.26 Score=51.38 Aligned_cols=23 Identities=39% Similarity=0.361 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+|++++||||++|.++-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 187
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.13 E-value=0.2 Score=60.39 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.+++|+|||++||||++|.++-.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 367999999999999999987643
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.08 E-value=0.26 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|+||-++||||+.|.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999864
No 189
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.07 E-value=0.19 Score=62.34 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=26.4
Q ss_pred eEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHH
Q 001212 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLL 1044 (1122)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~L 1044 (1122)
.+.+.+.+.+.+.. -|+.+. .+.++.|.|||++||||+|
T Consensus 23 ~~~~~~~~~~~L~~----------vsl~i~---~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 23 KIIVKGARAHNLKN----------IDVEIP---RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEEEECSTTCCS----------EEEEEE---TTSEEEEECSTTSSHHHHH
T ss_pred eEEEcCCCccceec----------cEEEEC---CCCEEEEECCCCCCHHHHh
Confidence 46666666555432 123333 2468999999999999997
No 190
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.01 E-value=0.84 Score=55.49 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=24.5
Q ss_pred eccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1015 VPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+=+|+.+.-. .+.++.|.|||++||||++|.++
T Consensus 358 ~l~~isl~i~-~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 358 VLSGVNFSVK-PGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp SEEEEEEEEC-TTCEEEEECSSSSSHHHHHHTTT
T ss_pred ceeceEEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 4445555422 34689999999999999999873
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.99 E-value=0.2 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+||+++||||+.|.++-
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998753
No 192
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.96 E-value=0.25 Score=54.42 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.++||+||+++||||+.+.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999874
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.95 E-value=0.27 Score=50.23 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.1
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
.++|.|||++||||+++.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57899999999999999874
No 194
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.90 E-value=0.31 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
...++||||.++||||+.|.++-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987653
No 195
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.85 E-value=0.26 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|.|||++||||+|++++=.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999988654
No 196
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.84 E-value=0.27 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|||+.++||||+++.++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999998765
No 197
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.79 E-value=0.26 Score=59.16 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..+++|+|||++||||++++++-..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 198
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=87.62 E-value=0.14 Score=61.34 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.+|||+|++||||+|..++++.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999988773
No 199
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.59 E-value=0.33 Score=53.76 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=27.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHH-cC---CcccCCc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VG---ADVPAEI 1064 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ-iG---~fVPA~~ 1064 (1122)
+++++|+|||++||||+++.+|.. ++. -| ++|.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCc
Confidence 468999999999999999988754 443 57 4555543
No 200
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.57 E-value=0.44 Score=52.74 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
++++.|+|||++||||+++.+|.. +++-|.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~ 128 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRR 128 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCe
Confidence 367888899999999999988754 5665543
No 201
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.33 E-value=0.26 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+++|+||+++||||+.|.++-
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 202
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.31 E-value=0.34 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
.+.+||||.++||||+|.+++.-..-
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999877665543
No 203
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.29 E-value=0.31 Score=49.32 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||.++||||+.+.++-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998764
No 204
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.23 E-value=0.28 Score=50.33 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.1
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|||++||||+|+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47899999999999999875
No 205
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.08 E-value=0.33 Score=49.20 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|+|+.++||||+.+.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999865
No 206
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=87.03 E-value=0.46 Score=60.58 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=31.0
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.|.+++.+...+. .-|+.+.. +.++.|||||++||||++|.+.
T Consensus 646 ~~L~v~~l~~~~Lk----------~Vsl~I~~---GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGAREHNLR----------GIDVSFPL---GVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECSTTCC----------SEEEEEES---SSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcccccc----------CceEEECC---CCEEEEEcCCCCCHHHHHHHHH
Confidence 56888887644322 12344432 3689999999999999999974
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.01 E-value=0.25 Score=54.86 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.|.|||++||||+||.++
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 578999999999999999985
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.98 E-value=0.37 Score=54.76 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=27.6
Q ss_pred eccceeeC--CCCCceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1015 VPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1015 VPNDi~L~--~~~~~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
-.-|..|+ +-...++++|+|||++|||||+.|++..+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444454 222357999999999999999999986543
No 209
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.87 E-value=0.26 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=15.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|+|+.++||||+.|.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999864
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.73 E-value=0.34 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..++.|||||++||||+.|.++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999776
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.73 E-value=0.3 Score=50.25 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=18.1
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
|.+||+||.++||+|+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999864
No 212
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.52 E-value=0.33 Score=55.23 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.|.|||++||||+|+.++
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 578999999999999999875
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.34 E-value=0.24 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.++.|+||+++||||+++.++=.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999987543
No 214
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=85.84 E-value=0.43 Score=60.69 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=30.9
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHHH
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.|.+++.+...+. .-|+.+. .+.++.|||||++||||++|.++
T Consensus 628 ~~L~v~~l~~~~Lk----------~Vsl~I~---~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGAREHNLK----------NVSVKIP---LGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECSSSCC----------SEEEEEE---SSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcccccc----------cceEEEc---CCCEEEEEcCCCCCHHHHHHHHH
Confidence 56888887654322 1233443 23689999999999999999974
No 215
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.55 E-value=0.43 Score=48.57 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
++++|+||+++||||+++.+.- .+...|.-|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~--~l~~~g~~v 37 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP--ALCARGIRP 37 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred eEEEEEeCCCCCHHHHHHHHHH--hccccCCce
Confidence 5799999999999999998653 355666433
No 216
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.41 E-value=0.32 Score=54.71 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
++|+|||++||||++|.++-.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 217
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.32 E-value=0.41 Score=48.25 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
++++|+||.++||||+.+.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 578999999999999999876
No 218
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.07 E-value=0.39 Score=58.74 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCccccC
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS 1068 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~ 1068 (1122)
.+.|.|||++||||+|+.+ +|.+.|-.+..+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I--------~Gl~~P~~sG~vt 78 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEAL--------SGVALPRGSGIVT 78 (608)
T ss_dssp CEECCCCTTSCHHHHHHHH--------HSCC-------CC
T ss_pred eEEEECCCCChHHHHHHHH--------hCCCCCCCCCeEE
Confidence 3889999999999999998 4777674333333
No 219
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.02 E-value=0.5 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|+||.++||||+.+.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.96 E-value=0.54 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++.|||+.++||||+.+.++-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988653
No 221
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.84 E-value=0.47 Score=48.51 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.2
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
+++|+|+.++||||+.+.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 58999999999999999875
No 222
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=84.72 E-value=0.36 Score=60.89 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHH
Q 001212 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQ 1046 (1122)
Q Consensus 991 ~~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRq 1046 (1122)
.+.|.+++.+...+. .-|+.+.. +.++.|||+|++||||++|.
T Consensus 500 ~~~L~v~~l~~~~L~----------~vsl~i~~---Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 500 AGWLELNGVTRNNLD----------NLDVRFPL---GVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp SCEEEEEEEEETTEE----------EEEEEEES---SSEEEEECCTTSSHHHHCCC
T ss_pred CceEEEEeeeecccc----------cceEEEcC---CCEEEEEcCCCcCHHHHHHH
Confidence 356788877543322 22444432 36899999999999999997
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.68 E-value=0.48 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-++|+||++.||||++|.++-
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3489999999999999998874
No 224
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.61 E-value=0.42 Score=52.98 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|||++||||+|++++
T Consensus 21 I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEETTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999999964
No 225
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.56 E-value=0.55 Score=47.44 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++||||.++||||+.+.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998775
No 226
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.34 E-value=0.52 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.++|+||.+.||||+++.++-..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999887654
No 227
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.31 E-value=0.3 Score=50.25 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
...++|.|||++||||+++.++
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999874
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.22 E-value=0.33 Score=50.20 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.3
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
+++|+||.++||||+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999864
No 229
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=84.09 E-value=0.57 Score=47.27 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||-++||||+.+.++-
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998754
No 230
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=83.96 E-value=1 Score=46.52 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred CCccccceeEEeccCCC--eEEeEEEEeeeCCCC--eEEEEccCCcchhcccC
Q 001212 102 GEDVLRKRIRVYWPLDK--AWYEGCVKSFDKECN--KHLVQYDDGEDELLDLG 150 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~--~~y~g~v~~~~~~~~--~h~v~Yddg~~e~~~l~ 150 (1122)
+.=.||.||-..|.+.. .||.|.|+.-+.... ++.|-||||...++.+.
T Consensus 67 ~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~ 119 (213)
T 3dlm_A 67 DKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQS 119 (213)
T ss_dssp GGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGG
T ss_pred cEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCc
Confidence 45569999999999875 899999998766443 89999999999888765
No 231
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.79 E-value=0.55 Score=47.73 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=22.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
+++||||-++||||+.+.++- .+...|..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~--~l~~~g~~v 31 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHCCC-E
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeE
Confidence 689999999999999998653 333346543
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.76 E-value=0.55 Score=48.20 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=19.1
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
++.||||.++||||+.|.++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998764
No 233
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.65 E-value=0.67 Score=52.55 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=32.3
Q ss_pred eccceeeC--CCCCceEEEEEecCCCchHHHHHHHHHHHHHHH-cCCcccCC
Q 001212 1015 VPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAE 1063 (1122)
Q Consensus 1015 VPNDi~L~--~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~ 1063 (1122)
-.-|..|+ +-...++++|.|||++||||++.|++..+.... --.|+-++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 33444454 222357899999999999999999987665321 12455554
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.62 E-value=0.56 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.|+||+++||||+.+.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999886
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.50 E-value=0.61 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||-++||||+.+.++-
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999998753
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=83.36 E-value=0.25 Score=54.99 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.++.|.|||++||||+|+.++
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 589999999999999999874
No 237
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.28 E-value=0.61 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++|+||++.||||+++.++-..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999877544
No 238
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.17 E-value=0.62 Score=50.33 Aligned_cols=31 Identities=35% Similarity=0.435 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
..+++|+|+.++||||+.+.++- .|.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~--~L~~~g~~ 34 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK--ILSKNNID 34 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH--HHHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH--HHHhCCCE
Confidence 35899999999999999998754 34456754
No 239
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.98 E-value=0.55 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|||+-++||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998753
No 240
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.82 E-value=0.67 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|+||.++||||+.+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999876
No 241
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.65 E-value=0.71 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|+||-++||||+.+.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998875
No 242
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.58 E-value=0.66 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++|+||.+.||||+++.++-.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988643
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.53 E-value=0.69 Score=46.63 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||-++||||+.+.++-
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998763
No 244
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.49 E-value=0.74 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|||+-++||||+.+.++-
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998753
No 245
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=82.48 E-value=3.9 Score=36.87 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=34.1
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCC--CeEEEEccCCc---chhccc
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGE---DELLDL 149 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg~---~e~~~l 149 (1122)
-||.+|.|++ +..||++.|.+..... ..+.|.|.+=. .|||..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~ 72 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITT 72 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEG
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCH
Confidence 4999999998 8899999999877644 48999998766 444443
No 246
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.40 E-value=0.73 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++.|+||.++||||+++.++-.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999976543
No 247
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=82.39 E-value=1.2 Score=46.51 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=38.1
Q ss_pred ccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccC
Q 001212 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1122)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~ 150 (1122)
.-+|.-|-+.|..|+.||.|.|++... +...|.| |.|..|.+.++
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~ 97 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTN 97 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGG
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchH
Confidence 348899999999999999999999977 6788888 67998887543
No 248
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.31 E-value=0.68 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||.++||||+.|.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 249
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=82.31 E-value=0.74 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||-++||||+.|.++-
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988754
No 250
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.30 E-value=0.75 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|||+-++||||+.+.++-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 251
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=81.92 E-value=0.73 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++.|+||+++||||+|+.++-
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 252
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.76 E-value=0.78 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.3
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|+||-++||||+.+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999999999664
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.74 E-value=0.72 Score=48.46 Aligned_cols=21 Identities=43% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++|+||.++||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998763
No 254
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.60 E-value=0.71 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||++.||||++|.+|-
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999998874
No 255
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.59 E-value=0.65 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1122)
++|+||++.||||++|.+|-..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999987653
No 256
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.51 E-value=0.7 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++|+||++.||||+++.++-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 257
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.36 E-value=1.6 Score=39.05 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=34.3
Q ss_pred CccccceeEEecc---CCCeEEeEEEEeeeCCC--CeEEEEccCCc
Q 001212 103 EDVLRKRIRVYWP---LDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (1122)
Q Consensus 103 ~~~vg~rv~v~wp---~d~~~y~g~v~~~~~~~--~~h~v~Yddg~ 143 (1122)
.-.||.+|.|+++ .+..||++.|.+..... ..+.|.|.+=.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~N 54 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFN 54 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCC
Confidence 4459999999997 58999999999988754 47999998766
No 258
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=81.20 E-value=1.5 Score=44.30 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=40.9
Q ss_pred CccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccCcceEEEE
Q 001212 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~~e~~~~~ 157 (1122)
..-+|.-|-+.|+.|+.||.|.|.+.++.+ ...|.| |=|..|.+ .+++-+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v----~~lr~l 97 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT----QQFRQL 97 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE----SCEECC
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh----hhhhcc
Confidence 445899999999999999999999998765 678888 88988773 466655
No 259
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=81.10 E-value=1.5 Score=42.48 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeC----CCCeEEEEccCCc
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDK----ECNKHLVQYDDGE 143 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~----~~~~h~v~Yddg~ 143 (1122)
-||.+|.++|+ |..||++.|..... ....+.|.|.+=.
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwN 55 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFN 55 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcC
Confidence 38999999998 78999999998664 3457999998644
No 260
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.97 E-value=0.61 Score=54.21 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|||++||||+|+.++
T Consensus 34 I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5899999999999999884
No 261
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.91 E-value=0.72 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|||+-++||||+.|.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998754
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=80.80 E-value=1.1 Score=47.51 Aligned_cols=51 Identities=27% Similarity=0.269 Sum_probs=34.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc--cCCccccCCcceEeeccCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGA 1079 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~ivDrIfTRiGa 1079 (1122)
+.+.+||||-++||||.|.+.+.-..-+..=+.+ |+...+ + ...|.+|+|-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~ 64 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGT 64 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCC
Confidence 4699999999999999999987765443221222 455444 3 2467888874
No 263
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.71 E-value=0.78 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+||++.||||++|.++-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999987654
No 264
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=80.62 E-value=0.86 Score=46.06 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
+++|||+-++||||+.+.++- -+...|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~--~l~~~g~~ 30 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE--YLKQKGYF 30 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH--HHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCe
Confidence 689999999999999998754 22234654
No 265
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=80.49 E-value=0.95 Score=51.03 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
..++.|+|||++||||+++.++- .+++.|.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~--~~~~~~~ 85 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGM--LLIREGL 85 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH--HHHHTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH--HHHhcCC
Confidence 36788999999999999997753 4455554
No 266
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.20 E-value=0.91 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.225 Sum_probs=18.3
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
.++|||+-++||||+.|.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999987653
No 267
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.12 E-value=0.93 Score=46.50 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+||-++||||+.|.++-
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998763
No 268
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=80.11 E-value=0.87 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|+||.++||||+.+.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999875
No 269
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.06 E-value=0.85 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.5
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+.++||+||.++||||+.|+++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999864
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=80.01 E-value=0.91 Score=47.07 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=17.7
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
.++||||-++||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999874
No 271
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.00 E-value=0.86 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||++.||||++|.+|-
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 272
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.62 E-value=1.1 Score=44.58 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+||-+.||||+++.++-.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988654
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=79.62 E-value=1 Score=52.77 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1122)
.+.+++|+||++.|||||+.++|..+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999887654
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.58 E-value=1 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+++|+||.++||||+.+.++-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 275
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=79.57 E-value=1.2 Score=46.98 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
+.++|.||+++||||++++..+-.++
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~ 102 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFI 102 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchh
Confidence 57899999999999999987665544
No 276
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.56 E-value=0.89 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..++|+|||+.||||++|.++-..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998654
No 277
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.36 E-value=1.5 Score=44.32 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=24.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
++++|+|+.++||||++..+ +-.|.+-|.-|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L--~~~l~~~g~~v 35 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKW--VAAAVREGWRV 35 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHH--HHHHHHTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHH--HHhhHhcCCee
Confidence 57899999999999999874 45666667544
No 278
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=79.17 E-value=1.3 Score=46.96 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=42.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc--cCCccccCCcceEeeccCC-------------------cccccc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGA-------------------KDHIMA 1085 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~ivDrIfTRiGa-------------------~D~i~~ 1085 (1122)
+.+.++|||=++||||.|-+.+.-...+..-+.| |+..-+-+ +.|.+|+|- .|-|.-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViI 96 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGI 96 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHHTTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEE
Confidence 3699999999999999998888776665444433 55444444 456666653 344445
Q ss_pred CCChHHHHHHHHHHHHHh
Q 001212 1086 GQSTFLTELSETALMLVR 1103 (1122)
Q Consensus 1086 g~STFmvEM~Eta~IL~~ 1103 (1122)
.+--|+.++.|...+|.+
T Consensus 97 DEaQF~~~v~el~~~l~~ 114 (234)
T 2orv_A 97 DEGQFFPDIVEFCEAMAN 114 (234)
T ss_dssp SSGGGCTTHHHHHHHHHH
T ss_pred EchhhhhhHHHHHHHHHh
Confidence 555555555555555544
No 279
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.83 E-value=0.96 Score=49.05 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||.+.||||++|.+|-
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5699999999999999998864
No 280
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.59 E-value=1.1 Score=46.58 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=17.7
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
.++||||-++||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999874
No 281
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=78.24 E-value=1.8 Score=37.73 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=32.1
Q ss_pred cccceeEEeccC--CCeEEeEEEEeeeCCCC--eEEEEccCCc
Q 001212 105 VLRKRIRVYWPL--DKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (1122)
Q Consensus 105 ~vg~rv~v~wp~--d~~~y~g~v~~~~~~~~--~h~v~Yddg~ 143 (1122)
.||.+|.|+|++ +..||++.|.+.+...+ ++.|.|.+=.
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwn 49 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWN 49 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcC
Confidence 499999999994 37999999999887655 5799998644
No 282
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.94 E-value=1 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++|+||.+.||||++|.++-..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 469999999999999999987543
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.87 E-value=1.5 Score=48.52 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+++++|+|||++||||++..+|.. +++-|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCC
Confidence 468888999999999999988754 344443
No 284
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.80 E-value=1.1 Score=44.10 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.6
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
..++|.|++++||||++++++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999974
No 285
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=77.52 E-value=1.1 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.6
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|++++||||++++++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999874
No 286
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=77.21 E-value=6 Score=35.76 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=31.5
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCC--CeEEEEccCCc
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg~ 143 (1122)
-||.+|.|++ +..||+++|.+..... ..+.|.|.+=.
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~N 65 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 65 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4999999997 8899999999877644 48999998776
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.20 E-value=1.5 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++++|+|||++||||++..+|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988874
No 288
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.44 E-value=1.2 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+||-+.||||+++.++-.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356799999999999999988654
No 289
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.40 E-value=1.4 Score=45.73 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.0
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|+||.++||||+.+.++-
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998764
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.35 E-value=1.5 Score=48.60 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=25.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC-CcccCCcc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1122)
+++++|+||.++||||+.+.+|-- .| -.|.|+++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI-----LPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-----SCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-----CCCcEEecccc
Confidence 468999999999999998887643 34 34555554
No 291
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.22 E-value=1.2 Score=50.13 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
..++++|+||+++||||++.++|..+.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999887544
No 292
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=75.87 E-value=1.5 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.1
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
...++.||||-++||||+.+.++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999988553
No 293
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=75.78 E-value=2.9 Score=44.19 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=39.8
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccCcceEEEE
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~~e~~~~~ 157 (1122)
-+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.++ +++.+
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~--~l~~l 117 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAI 117 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG--GEECC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH--HhccC
Confidence 368889999999999999999998754 4578888 99998887654 44444
No 294
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.66 E-value=1.6 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|||+-++||||+.+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 295
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.65 E-value=1.6 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+..++||||-++||||+.+.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 296
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=75.61 E-value=1.2 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-++|+|||+.||||++|.+|-.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998753
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.52 E-value=1.1 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=20.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
-++|+||+++||||+++.++....
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999876653
No 298
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=75.43 E-value=1.5 Score=43.71 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|++++||||++++++
T Consensus 6 ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
No 299
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=75.19 E-value=1.8 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+.|-|+|.+||||+++.+.=
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4688999999999999999864
No 300
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=75.11 E-value=3.3 Score=39.68 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=35.8
Q ss_pred cccceeEEeccCCC----eEEeEEEEeeeCCCCeEEEEccCCc---chhcccCcceEEEE
Q 001212 105 VLRKRIRVYWPLDK----AWYEGCVKSFDKECNKHLVQYDDGE---DELLDLGKEKIEWV 157 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~----~~y~g~v~~~~~~~~~h~v~Yddg~---~e~~~l~~e~~~~~ 157 (1122)
-+|..|.|||..+. .||.|+|+..- ...|.|.|++=+ .|++. .+++|-+
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~~~~~EiV~--~~rlR~~ 117 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACDATYNEIVT--LERLRPV 117 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC----CEEEC--GGGEEEC
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCCCCcceEEe--hhheEeC
Confidence 48999999999877 89999999976 568999998744 45554 4555544
No 301
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.97 E-value=1.6 Score=48.86 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcC-CcccCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1122)
++++|+||.++||||+.+.+|- ++| .+|.+++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~-----~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD-----ALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-----HSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-----HcCCcEEeccch
Confidence 5799999999999999887753 444 45666554
No 302
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.76 E-value=1.3 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..++|+|||++||||++|.++-.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 57999999999999999998753
No 303
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.73 E-value=1.7 Score=48.40 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcC-CcccCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1122)
.+++|+||.++||||+.+.+|-- .| -+|.|++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR-----LNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT-----TTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHh-----CccceeecCcc
Confidence 68999999999999998877543 33 35566655
No 304
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=74.52 E-value=1.7 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||-++||||+.+.++-
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 305
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.50 E-value=1.3 Score=44.53 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=17.5
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|++++||||+++.++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999875
No 306
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.31 E-value=1.6 Score=49.08 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcC-CcccCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1122)
.+++|+||.++||||+.+.++- ++| .+|.+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~-----~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK-----KFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-----HTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHH-----HcCCceeccccc
Confidence 4799999999999999987764 344 45566554
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.04 E-value=1.6 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.++|+||++.||||++|.++-..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58999999999999999887654
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.02 E-value=1.7 Score=42.95 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.5
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++|||+-++||||+.|.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999988764
No 309
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=73.49 E-value=1.2 Score=59.19 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=28.8
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccC
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA 1062 (1122)
.|=+|+.+.-. .+.++.|.|||++||||+++.+ .|.+-|-
T Consensus 404 ~vL~~isl~i~-~G~~~~ivG~sGsGKSTl~~ll--------~g~~~~~ 443 (1284)
T 3g5u_A 404 QILKGLNLKVK-SGQTVALVGNSGCGKSTTVQLM--------QRLYDPL 443 (1284)
T ss_dssp CSEEEEEEEEC-TTCEEEEECCSSSSHHHHHHHT--------TTSSCCS
T ss_pred cceecceEEEc-CCCEEEEECCCCCCHHHHHHHH--------hCCCCCC
Confidence 34456666432 3468999999999999999987 5666553
No 310
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.41 E-value=1.6 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivI 1052 (1122)
++|+||++.||||++|.++-...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999886654
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=73.38 E-value=2 Score=45.05 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1122)
+.+++|+||.++||||.++.++ -.|...|.-
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~--~~l~~~~~~ 36 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA--ERLRERGIE 36 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH--HHHHTTTCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHH--HHHHHcCCC
Confidence 3689999999999999998865 455555543
No 312
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=73.30 E-value=1.7 Score=44.37 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=18.6
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++|||+-.||||||.++.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 378999999999999999763
No 313
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.70 E-value=2.4 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+++++|+|||++||||++..+|..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367888999999999999887754
No 314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=72.51 E-value=2.2 Score=44.27 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.8
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
-+.+|||+.++|||+++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 47899999999999997443
No 315
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.48 E-value=1.8 Score=51.11 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-++|+||++.||||++|.+|-
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999875
No 316
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=72.46 E-value=2 Score=44.27 Aligned_cols=23 Identities=30% Similarity=0.143 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++.|||+-++||||+.+.++-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999987654
No 317
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=72.37 E-value=1.3 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++.||||-++||||+.+.++-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 318
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.33 E-value=1.7 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+.++|+||++.||||+++.+|-..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988654
No 319
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=72.19 E-value=2.2 Score=45.51 Aligned_cols=29 Identities=41% Similarity=0.543 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1122)
+.+++|.||.++||||.++.++- .|...|
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcC
Confidence 36899999999999999988754 344444
No 320
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=71.66 E-value=1.6 Score=58.09 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=22.8
Q ss_pred cceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1017 NDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
+|+.+.-. .+.++.|.|||++||||++|.+
T Consensus 1050 ~~vsl~i~-~Ge~v~ivG~sGsGKSTl~~~l 1079 (1284)
T 3g5u_A 1050 QGLSLEVK-KGQTLALVGSSGCGKSTVVQLL 1079 (1284)
T ss_dssp SSCCEEEC-SSSEEEEECSSSTTHHHHHHHH
T ss_pred cceeEEEc-CCCEEEEECCCCCCHHHHHHHH
Confidence 44444321 2468999999999999999988
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.61 E-value=1.6 Score=48.63 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=25.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1122)
.++++|+||.++||||++.|+|..+.++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~ 125 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNP 125 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4799999999999999999999876655
No 322
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=71.20 E-value=2.4 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|+|+-++||||+++.++-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999997753
No 323
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=70.89 E-value=2.2 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..++|.||+++||||+.|.+|-..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999999999999887543
No 324
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=70.88 E-value=2.2 Score=47.57 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
.++++|+||+++||||++.|+|..+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 468999999999999999999877544
No 325
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=70.35 E-value=2.8 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
+.+++|+|+++.|||||+.++|..+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988765
No 326
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=70.19 E-value=4 Score=43.59 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=39.5
Q ss_pred ccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccCcceEEEE
Q 001212 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~~e~~~~~ 157 (1122)
.-+|.-|-+.|. |+.||.|.|++.... +...|.| |-|..|.+.+ .+++.+
T Consensus 66 ~~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~--~~lr~l 116 (246)
T 2hqx_A 66 PRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPS--TRLGTL 116 (246)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECG--GGEECC
T ss_pred CCCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeH--HHhhcC
Confidence 348999999999 999999999999865 4678888 6699998854 344444
No 327
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=70.19 E-value=2.1 Score=44.32 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.9
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|||+.++||||+.+.++-
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999887653
No 328
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=70.06 E-value=2.6 Score=43.74 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=17.3
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
+.++|+||-++||||+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 67999999999999987553
No 329
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=69.84 E-value=2.2 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=19.6
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.++|+||-+.||||+++.++-.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 330
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=69.71 E-value=4.7 Score=37.08 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.8
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCC--eEEEEccCCc
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~--~h~v~Yddg~ 143 (1122)
-+|.+|-++| +..||++.|.+.....+ .+.|.|.+=.
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwN 62 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWN 62 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4899999999 78999999998875443 7999998644
No 331
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=69.70 E-value=2.4 Score=41.16 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=18.4
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
-++|+||.+.|||++.|.++-
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998753
No 332
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=69.39 E-value=2.4 Score=48.19 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.1
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
=++|.|+..|||||++||.-++
T Consensus 35 killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999998644
No 333
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.37 E-value=2.5 Score=44.93 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||.+.|||+++|.+|-
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 334
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=69.23 E-value=2.8 Score=43.88 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=23.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
.+++|.||.++||||.++.++ -.|...|.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~--~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVV--ETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHH--HHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHH--HHHHHcCC
Confidence 689999999999999998764 45656663
No 335
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=69.15 E-value=1.4 Score=51.06 Aligned_cols=21 Identities=33% Similarity=0.350 Sum_probs=18.8
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
..+.|.|||.+||||||+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 458899999999999999875
No 336
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=69.14 E-value=2.3 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=17.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.+++|.||.++||||.++.++-
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998753
No 337
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.07 E-value=1.9 Score=54.35 Aligned_cols=22 Identities=41% Similarity=0.461 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||+++||||++|.+|-
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=69.01 E-value=2.8 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.0
Q ss_pred CceEEEEEecCCCchHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1122)
.+++++|.||-++||+|..+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999877765
No 339
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.76 E-value=2.7 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.+++|+||-++||||+.+.++-
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 340
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=68.62 E-value=3.8 Score=42.10 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc--cCCccccCCcceEeeccCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGA 1079 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~ivDrIfTRiGa 1079 (1122)
+++.++|||=++||||.|-+.+.-..-+..=+.| |+..-+.+ ...|.+|+|-
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~ 61 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGE 61 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCC
Confidence 4799999999999999999888776554433333 44433333 4467778773
No 341
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.58 E-value=2.8 Score=46.55 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
.+.+++|+|+.+.|||||+.|+|..+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987654
No 342
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=68.24 E-value=2.8 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
++.++|+||.+.|||++.|.+|-.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 343
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=68.19 E-value=8 Score=34.72 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=30.7
Q ss_pred cceeEEeccCCCeEEeEEEEeeeCCC-----CeEEEEccCCcc
Q 001212 107 RKRIRVYWPLDKAWYEGCVKSFDKEC-----NKHLVQYDDGED 144 (1122)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~-----~~h~v~Yddg~~ 144 (1122)
|.+|-++|+ |..||++.|..-.... ..+.|.|.+-..
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~Nk 59 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNR 59 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCT
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCccc
Confidence 789999996 7899999999876543 489999987774
No 344
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=67.83 E-value=3.6 Score=43.17 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=25.9
Q ss_pred CceEEEEEecCCCchHH-HHHHHHHHHHHHHcCCcc--cCCccccCCcceEeeccC
Q 001212 1026 NASFILLTGPNMGGKST-LLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMG 1078 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST-~LRqvaLivILAQiG~fV--PA~~a~l~ivDrIfTRiG 1078 (1122)
.+.+.+||||-.+|||| +||.+ .-..-|..-+.| |+...+-+ -+.|.+|+|
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~kp~~D~R~~-~~~I~Sr~G 80 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFKPAIDDRYH-KEKVVSHNG 80 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEEEC------------CBTT
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEEeccCCcch-hhhHHHhcC
Confidence 35799999999999999 66663 444333333332 44332211 124555555
No 345
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=67.82 E-value=6.1 Score=40.83 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=40.4
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccCcceEEEE
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~~e~~~~~ 157 (1122)
-+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.+ .+++.+
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~--~~l~~l 117 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTT--DQLQAI 117 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECG--GGEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEH--HHhccC
Confidence 378889999999999999999998765 4577777 9999988765 456655
No 346
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=67.60 E-value=2.2 Score=47.89 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+||.+.||||+++.++-.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998754
No 347
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=67.38 E-value=20 Score=31.95 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=38.4
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCc---chhcccCcceEE
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE---DELLDLGKEKIE 155 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~---~e~~~l~~e~~~ 155 (1122)
||.++.+.-+. +.||.+.|+.-+....+..|.||.=+ .||++....++.
T Consensus 22 vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 22 IGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp SSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEE
T ss_pred CCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEe
Confidence 99999999765 47999999999998899999998665 455555544443
No 348
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=67.29 E-value=4.2 Score=42.63 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHH--cCCcccCC
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ--VGADVPAE 1063 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQ--iG~fVPA~ 1063 (1122)
.+.+++|+|+.++|||||+-|+|......+ -++|+-.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 346899999999999999999988765543 23454443
No 349
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=67.13 E-value=3.8 Score=47.77 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+.+++|+|||++||||++..+|. .+++-|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~--~l~~~G~ 129 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR--YFQKRGY 129 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH--HHHTTTC
T ss_pred CeEEEEECcCCCCHHHHHHHHHH--HHHHCCC
Confidence 47899999999999999987763 4455553
No 350
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=66.90 E-value=3.2 Score=48.46 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=24.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
.+.+++|+|+.+.|||||+.|+|..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988765
No 351
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=66.79 E-value=3.5 Score=46.72 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=23.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCc
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI 1064 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~ 1064 (1122)
++|-|...|||||++||+.++ |-+-|.+.+.
T Consensus 12 ~lllG~~~sGKsT~~kq~~~~----~~~g~~~~e~ 42 (354)
T 2xtz_A 12 LLLLGAGESGKSTIFKQIKLL----FQTGFDEGEL 42 (354)
T ss_dssp EEEECSTTSSHHHHHHHHHHH----HSCCCCHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH----hcCCCCchhH
Confidence 688899999999999999854 3344555543
No 352
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=66.72 E-value=11 Score=50.29 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=31.5
Q ss_pred ceeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1013 ~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
.+|=+|+.+.-. .+..+.|.||+++||||+++.+ +|.|-|-+
T Consensus 431 ~~vL~~isl~i~-~G~~vaivG~sGsGKSTll~ll--------~~~~~~~~ 472 (1321)
T 4f4c_A 431 VPILRGMNLRVN-AGQTVALVGSSGCGKSTIISLL--------LRYYDVLK 472 (1321)
T ss_dssp SCSEEEEEEEEC-TTCEEEEEECSSSCHHHHHHHH--------TTSSCCSE
T ss_pred CceeeceEEeec-CCcEEEEEecCCCcHHHHHHHh--------cccccccc
Confidence 456667777532 3468999999999999999976 67665554
No 353
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=66.59 E-value=3.6 Score=46.68 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=27.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHHH-cCCcccCC
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAE 1063 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~ 1063 (1122)
..++++|+||+++||||+..|++..+.... -..||-++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357899999999999999999887664321 12355554
No 354
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=66.10 E-value=3.5 Score=43.52 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHH-cCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~ 1058 (1122)
+.+++|+|+.++||||.++.++- .|.. .|.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~--~l~~~~g~ 51 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAE--YLSEIYGV 51 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHHHCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHhhccCc
Confidence 57899999999999999998764 3444 453
No 355
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=66.04 E-value=6.3 Score=37.15 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceEEE
Q 001212 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEW 156 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~~~ 156 (1122)
|....|..|+|.|++. .-|.|+-.+..... .+.|..+||.. +.++.++|--
T Consensus 62 GpP~~G~~V~V~W~DG-~~y~a~f~g~~~~~-~Y~V~feDgs~--~~~kR~~iyt 112 (118)
T 2qqr_A 62 GPPAEGEVVQVRWTDG-QVYGAKFVASHPIQ-MYQVEFEDGSQ--LVVKRDDVYT 112 (118)
T ss_dssp CCCCTTCEEEEECTTS-CEEEEEEEEEEEEE-EEEEEETTSCE--EEECGGGEEE
T ss_pred CCCCCCCEEEEEcCCC-CEeeeEEeceeEEE-EEEEEECCCCE--EEEcHHHeec
Confidence 7888999999999855 58888888765444 48899999984 5556666543
No 356
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=65.09 E-value=3.3 Score=45.68 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.5
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..++.|.|+|.+||||+++.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999874
No 357
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=65.04 E-value=3.3 Score=41.56 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
.-++|.|+.++||||++.+++-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998753
No 358
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=65.01 E-value=4.5 Score=45.16 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=26.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA 1062 (1122)
.++++|+||.+.||||+..|+|.. ...-..||-+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEe
Confidence 467899999999999999999876 2223357766
No 359
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=64.46 E-value=3.3 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||.+.||||++|.++-
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 360
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=63.85 E-value=4.7 Score=48.70 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
.++++||||++.||||+++.++ ..+.+.|.-|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~--~~l~~~g~~V 235 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVA--DLAESLGLEV 235 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHH--HHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHH--HHHHhcCCeE
Confidence 3689999999999999988754 4555566433
No 361
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=63.74 E-value=3.5 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
-++|.|++++||||+||.+.+-.++
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999998765554
No 362
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=63.54 E-value=3.8 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+||-+.|||+++|.+|-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999988764
No 363
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=63.50 E-value=3.6 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
++++|.|+|.+||||+|+.++
T Consensus 180 ~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999875
No 364
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.87 E-value=4.2 Score=45.78 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+||.+.||||+++.++-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=62.51 E-value=4.2 Score=46.80 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=24.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCCcc
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF 1065 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a 1065 (1122)
.+++|+||.++||||+.+.+|-.. -|-+|.|+++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~----~~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF----NGEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH----TEEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHC----CCeEeecCcc
Confidence 578999999999999988776432 1345666553
No 366
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=62.50 E-value=1.9 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-++|+||.+.|||+++|.+|-.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988753
No 367
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=62.48 E-value=4 Score=39.26 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.8
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+.++||||++++++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999875
No 368
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.34 E-value=4.1 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++|+||-+.|||+++|.+|-.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988754
No 369
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=62.02 E-value=3.9 Score=43.06 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|++++||||+++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 347899999999999998874
No 370
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=61.93 E-value=4 Score=45.44 Aligned_cols=23 Identities=43% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++|+||-+.|||+++|.+|--
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56999999999999999988753
No 371
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=61.70 E-value=5.2 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.-++|+||.+.|||+++|.+|-..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999887654
No 372
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.55 E-value=4.6 Score=45.36 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=25.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC-CcccCCcc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1122)
..+++|+||-++||||+.+.+|- ++| -+|-|++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~-----~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA-----HFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT-----TSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHH-----HCCCcEEccccc
Confidence 35899999999999999887764 455 45666655
No 373
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=61.49 E-value=1.2 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.6
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..++|+|||++||||+|.++++
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999997777744
No 374
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=61.27 E-value=4.2 Score=40.60 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=18.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|++.+||||++++++
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 348899999999999999873
No 375
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=61.17 E-value=4.9 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
+.+++|.||.++||||.++.++
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998864
No 376
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=61.11 E-value=11 Score=35.86 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCc
Q 001212 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE 143 (1122)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (1122)
|....|..|+|.|++ ..-|.|...+..... .+.|..|||.
T Consensus 63 GpP~~G~~V~V~W~D-G~~y~a~f~g~~~~~-~YtV~FeDgs 102 (123)
T 2xdp_A 63 GPPAEGEVVQVKWPD-GKLYGAKYFGSNIAH-MYQVEFEDGS 102 (123)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEEEEEEEE-EEEEECTTSC
T ss_pred CCCCCCCEEEEEcCC-CCEEeEEEeeeeeEE-EEEEEECCCC
Confidence 788899999999984 558888888876554 4889999997
No 377
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=60.76 E-value=4.7 Score=45.38 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.0
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
+||-|+.-|||||++||.=+|
T Consensus 8 lLLLG~geSGKSTi~KQmkii 28 (340)
T 4fid_A 8 VMLLGSGESGKSTIAKQLKIL 28 (340)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 578899999999999997543
No 378
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=60.50 E-value=3.6 Score=40.73 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.1
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|++.+||||+++++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999998864
No 379
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=60.38 E-value=4.8 Score=38.61 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||+++++.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998874
No 380
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.06 E-value=4.8 Score=41.82 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.4
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
+++|.||-++||+|..+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999887765
No 381
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=59.84 E-value=4.3 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||.+.||||++|.+|-
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999999999843
No 382
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=59.53 E-value=4.9 Score=40.50 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.0
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|++.+||||++++.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999875
No 383
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=59.47 E-value=4.8 Score=38.89 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+-++||||+++++.
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999875
No 384
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.44 E-value=4.7 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||.+.||||++|.+|-
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 385
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.25 E-value=3 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1122)
..+++|.|+-++||||+++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998764
No 386
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=59.04 E-value=4.9 Score=44.54 Aligned_cols=23 Identities=48% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+-++|+||-+.|||+++|.+|-.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988653
No 387
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.62 E-value=4.7 Score=43.81 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-++|+||.+.|||+++|.++-.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
No 388
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=58.45 E-value=5.2 Score=39.99 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.7
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|+.++||||+++++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458899999999999999885
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=58.37 E-value=5.1 Score=39.30 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.7
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+.++||||+++++.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998874
No 390
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=58.36 E-value=2.7 Score=40.65 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=18.3
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
-++|+||.+.|||++.|.++-
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCC
T ss_pred cEEEECCCCccHHHHHHHHHH
Confidence 388999999999999998753
No 391
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=57.84 E-value=7.6 Score=36.56 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=32.6
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcc
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGED 144 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~ 144 (1122)
-||.+|..-|+ +..||.|+|++-... --|.|.+|||..
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~ 44 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSF 44 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCE
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCc
Confidence 38999999998 889999999997655 458999999983
No 392
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=57.76 E-value=5.8 Score=46.35 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1122)
.+.+++|+|+.+.|||||+-|+|..+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 34689999999999999999999987664
No 393
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=57.68 E-value=5.4 Score=38.63 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999863
No 394
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=57.58 E-value=5.2 Score=44.09 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
++++|+||-+.||||++++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 589999999999999999975
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=57.50 E-value=5.6 Score=39.46 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||+++++.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999874
No 396
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.42 E-value=5.5 Score=38.49 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 397
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=57.42 E-value=6.9 Score=40.98 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
..+.++|||=.+||||.|-+.+.-..-+..=+.|
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 4789999999999999999998877666544443
No 398
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=57.35 E-value=5.5 Score=38.58 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||+++++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 399
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=57.28 E-value=5.3 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.+||+||.+.||||++|.++-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988753
No 400
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=57.25 E-value=5.3 Score=43.05 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=17.9
Q ss_pred eEEEEEecCCCchHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1122)
.-++|.|++++||||+++++
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l 23 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNAL 23 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34789999999999999987
No 401
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=57.22 E-value=5.5 Score=38.60 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999998864
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=57.22 E-value=5.8 Score=38.39 Aligned_cols=19 Identities=47% Similarity=0.536 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999875
No 403
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=57.03 E-value=5.6 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.5
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1122)
+||-|+.-|||||++||.=++.
T Consensus 35 lLlLG~geSGKST~~KQmkii~ 56 (353)
T 1cip_A 35 LLLLGAGESGKSTIVKQMKIIH 56 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCchhHHHHHHHhh
Confidence 6889999999999999987653
No 404
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=56.88 E-value=5.7 Score=38.22 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+-++||||++++..
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 405
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=56.82 E-value=5 Score=46.66 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.8
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+|++||||+++.++
T Consensus 182 kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
No 406
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=56.54 E-value=21 Score=30.11 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=31.8
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCc
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE 143 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (1122)
||.++.+.-+... ||.++|+..+-..++-.|.||+=+
T Consensus 15 vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~ 51 (69)
T 3sd4_A 15 VGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWN 51 (69)
T ss_dssp TTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCC
Confidence 8999999888766 599999999888889999998544
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=56.43 E-value=5 Score=41.87 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++|.||.+.||||+...+|=.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999998766543
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=56.41 E-value=6.8 Score=40.25 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
.+.++|+|+-++||||++..++-.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999887643
No 409
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=56.41 E-value=6.2 Score=41.19 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=32.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcc-cCCc-c------ccCCcceEeeccCC
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI-F------EISPVDRIFVRMGA 1079 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV-PA~~-a------~l~ivDrIfTRiGa 1079 (1122)
.+.|||.=++||||..+. |++.|++| -|+. + .-..+..|+.+.|.
T Consensus 11 ~iglTGgigsGKStv~~~------l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~ 63 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADL------FAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGP 63 (210)
T ss_dssp EEEEECCTTSCHHHHHHH------HHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHH------HHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhCh
Confidence 588999999999999884 56789876 3332 1 12456677777774
No 410
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=56.38 E-value=5.8 Score=38.83 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.5
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 411
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=56.24 E-value=6.5 Score=40.74 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=18.6
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.|++|-|+-++||||.++.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999988765
No 412
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=56.09 E-value=5.4 Score=40.51 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.9
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|++++||||++++.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999875
No 413
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=56.03 E-value=6.9 Score=38.30 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=18.6
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|+.++||||+++++.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999874
No 414
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=55.72 E-value=6.2 Score=39.23 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.3
Q ss_pred EEEEEecCCCchHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqv 1047 (1122)
-++|.|+..+||||+++++
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999986
No 415
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=55.58 E-value=6.1 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
++++|+||=+.||||++++++-
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 416
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=55.44 E-value=6.2 Score=38.30 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=18.0
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
No 417
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=55.37 E-value=6.2 Score=37.88 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.1
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||++++..
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998765
No 418
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=55.23 E-value=5.6 Score=44.80 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-++|+||.+.|||++.|.+|-.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999854
No 419
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=55.16 E-value=6 Score=40.51 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.5
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
.-++|.|+.++||||++++++
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999865
No 420
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=55.04 E-value=5.9 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.0
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
-++|+||.+.|||+++|.++-
T Consensus 31 ~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999874
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.93 E-value=8.8 Score=43.23 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=22.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
.+++|||+.++||||++..++.. +++.|-
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~ 108 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMH--LIERGH 108 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCC
Confidence 57899999999999999877644 455554
No 422
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=54.75 E-value=5.4 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.3
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
..++|.|+|++||||+++.++
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999873
No 423
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=54.66 E-value=6.4 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||++++++
T Consensus 20 ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999875
No 424
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=54.51 E-value=4.8 Score=45.62 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.7
Q ss_pred EEEEecCCCchHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqv 1047 (1122)
++|.|++++||||+++++
T Consensus 40 I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp EEECCCTTSCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 689999999999999986
No 425
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=54.39 E-value=6.8 Score=38.24 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=17.0
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999875
No 426
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.33 E-value=5.9 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1122)
++|+||.+.||||+++.++-..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999887654
No 427
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=54.08 E-value=6.7 Score=38.22 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||++++..
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 7899999999999999864
No 428
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=53.94 E-value=6.1 Score=43.18 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
-++|+||.+.||||++|.++-..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999887553
No 429
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=53.91 E-value=7 Score=38.65 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=17.6
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999874
No 430
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=53.82 E-value=6.8 Score=38.27 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=17.9
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 431
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.81 E-value=6.4 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+.++|+||-+.||||++|.+|-.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999987643
No 432
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=53.75 E-value=6.8 Score=37.95 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=17.1
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||++++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999863
No 433
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=53.60 E-value=8.5 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
+-++|+||.+.|||++++.+|-...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999998876544
No 434
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.31 E-value=5 Score=44.06 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+.++|+||-+.||||++|.++-
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 435
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=53.12 E-value=6.8 Score=45.66 Aligned_cols=23 Identities=43% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+-++|+||.+.|||+++|.+|-.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988754
No 436
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=53.07 E-value=6.3 Score=44.45 Aligned_cols=23 Identities=48% Similarity=0.491 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+-++|+||-+.|||+++|.+|-.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999988754
No 437
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=52.97 E-value=10 Score=48.48 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=29.4
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHH
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLL 1044 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~L 1044 (1122)
..|.|+++|.--|-. -|+.+.. .++++|||+-+||||+|.
T Consensus 24 ~~I~i~gar~hNLkn----------i~v~iP~---~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 24 DRLIVKGAREHNLRS----------VDLDLPR---DALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CEEEEEEECSSSCCS----------EEEEEES---SSEEEEEESTTSSHHHHH
T ss_pred CcEEEecccccccCc----------eeeeccC---CCEEEEECCCCCcHHHHH
Confidence 458999999744432 2455542 479999999999999984
No 438
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=52.94 E-value=7.2 Score=37.56 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||++++..
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999999875
No 439
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=52.81 E-value=8.4 Score=39.69 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
...++|+|+.++||||++..++-.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356889999999999999988654
No 440
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=52.69 E-value=7.5 Score=38.00 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.1
Q ss_pred EEEEEecCCCchHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1122)
-++|.|+-++||||+++.+.-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999988653
No 441
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=52.65 E-value=7.4 Score=47.41 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcCC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1122)
+.+++|||+-++||||+.|.++- .|.+.|.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~--~L~~~G~ 81 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEE--YLVCHGI 81 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHTTC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH--HHHhcCC
Confidence 46899999999999999998754 3444464
No 442
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=52.60 E-value=7.5 Score=38.63 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.1
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||++++..
T Consensus 10 i~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6889999999999999864
No 443
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=52.60 E-value=9.1 Score=38.82 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHcCCcccCC
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1122)
+.++||||-++||||+.... .+-|+-+-|+
T Consensus 17 ~gvli~G~SGaGKStlal~L------~~rG~~lvaD 46 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLAL------IDRGHQLVCD 46 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHH------HHTTCEEEES
T ss_pred EEEEEEcCCCCCHHHHHHHH------HHcCCeEecC
Confidence 67999999999999986543 3457655554
No 444
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=52.39 E-value=7.3 Score=39.00 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=17.1
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||++++..
T Consensus 23 i~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999998754
No 445
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=52.37 E-value=7.3 Score=38.57 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=17.7
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999998864
No 446
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=52.36 E-value=7.4 Score=37.58 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=16.6
Q ss_pred EEEEecCCCchHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqv 1047 (1122)
++|.|+..+||||+++.+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999876
No 447
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=52.27 E-value=9.7 Score=43.24 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivI 1052 (1122)
..++++|+||.++|||||+.+++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 346899999999999999999987654
No 448
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=52.24 E-value=9.8 Score=48.43 Aligned_cols=39 Identities=26% Similarity=0.310 Sum_probs=28.8
Q ss_pred eEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHH
Q 001212 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLL 1044 (1122)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~L 1044 (1122)
.|.|+++|+--|-. -|+.+.. .++++|||+-+||||++.
T Consensus 3 ~i~i~gar~hNLkn----------i~~~ip~---~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 3 EIVVKGARVHNLKN----------ITVRIPK---NRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EEEEESBCSTTCCS----------BCCEEET---TSEEEEEESTTSSSHHHH
T ss_pred cEEEeCccccccCc----------ceeccCC---CcEEEEECCCCCcHHHHH
Confidence 48899999754432 2455542 479999999999999984
No 449
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=52.08 E-value=7.9 Score=39.78 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=23.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHcCCcc
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1122)
+++|-|+-++||||.++.++ -.|.+-|.-|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~--~~L~~~g~~v 31 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLA--QYLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHHCCCcE
Confidence 67899999999999998764 4666777544
No 450
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=51.81 E-value=7.2 Score=38.14 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999863
No 451
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.81 E-value=15 Score=38.59 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=38.0
Q ss_pred ccceeEEeccCCCeEEeEEEEeeeCCC---------CeEEEEccCC-cchhcccCcceEE
Q 001212 106 LRKRIRVYWPLDKAWYEGCVKSFDKEC---------NKHLVQYDDG-EDELLDLGKEKIE 155 (1122)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~---------~~h~v~Yddg-~~e~~~l~~e~~~ 155 (1122)
||--|-+.|....+||+|.|+.+.+.. --++|.|||= +.+.+++....++
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~ir 64 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 64 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEE
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceeccccccc
Confidence 788899999999999999999999854 3466788654 5566666555444
No 452
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=51.80 E-value=7.5 Score=38.37 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 453
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=51.78 E-value=7.5 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
..+++++|+.++||||+-|.++-
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 454
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=51.59 E-value=7.6 Score=38.63 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+.++||||++++++
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999875
No 455
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=51.51 E-value=7.9 Score=43.25 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.6
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
+||-|+--|||||++||.=+|
T Consensus 10 lLlLG~geSGKSTi~KQmkii 30 (327)
T 3ohm_A 10 LLLLGTGESGKSTFIKQMRII 30 (327)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCccHHHHHHHHHHH
Confidence 578899999999999998665
No 456
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=51.30 E-value=10 Score=47.79 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=31.3
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHHHHH
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQV 1047 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqv 1047 (1122)
..|.|+++|.=-|-. -|+.+.. ..+.+|||+-+||||||.--+
T Consensus 14 ~~I~i~gar~hNLkn----------i~v~iP~---~~l~viTGvSGSGKSSLafdt 56 (842)
T 2vf7_A 14 GFVQVRGARQHNLKD----------ISVKVPR---DALVVFTGVSGSGKSSLAFGT 56 (842)
T ss_dssp TEEEEEEECSTTCCS----------EEEEEES---SSEEEEESSTTSSHHHHHTTT
T ss_pred CeEEEeeccccCCCC----------eeEEecC---CCEEEEECCCCCCHHHHHHHH
Confidence 369999999644422 2455542 379999999999999997554
No 457
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=50.99 E-value=8.1 Score=37.25 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998874
No 458
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=50.91 E-value=8 Score=37.94 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+-.+||||+++++.
T Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999875
No 459
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=50.16 E-value=11 Score=47.83 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=29.5
Q ss_pred CeEEEeecCCCceecccCCCCceeccceeeCCCCCceEEEEEecCCCchHHHH
Q 001212 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLL 1044 (1122)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~L~~~~~~~~~IITGPNMgGKST~L 1044 (1122)
..|.|+++|.--|-. -|+.+.. .++++|||+-+||||++.
T Consensus 22 ~~I~i~gar~hNLkn----------i~v~iP~---~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 22 DKIIVKGARAHNLKN----------IDVEIPR---GKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CEEEEEEECSSSCCS----------EEEEEET---TSEEEEEESTTSSHHHHH
T ss_pred ceEEEeccccccCCc----------eeeeccC---CcEEEEECCCCCCHHHHH
Confidence 469999999754432 2455542 479999999999999974
No 460
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=50.16 E-value=8.2 Score=38.95 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.7
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999874
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=50.05 E-value=8.6 Score=38.53 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999875
No 462
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=50.05 E-value=8.4 Score=37.65 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.5
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||++++..
T Consensus 9 i~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999875
No 463
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=49.79 E-value=8.3 Score=38.51 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=17.2
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999764
No 464
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.69 E-value=8.4 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
++-+||.||-+.|||++.|.+|-
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999873
No 465
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.58 E-value=8 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1122)
++|+||.+.||||+++.++-..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999987553
No 466
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=49.54 E-value=8.8 Score=46.33 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHHHHcC
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1122)
+.+++|||+-++||||+.|.++- .|.+.|
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~--~L~~~G 424 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQV--TLNQQG 424 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHHC
T ss_pred ceEEEeecCCCCCHHHHHHHHHH--HhcccC
Confidence 46899999999999999998764 344445
No 467
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=49.30 E-value=7.9 Score=39.92 Aligned_cols=59 Identities=24% Similarity=0.201 Sum_probs=32.4
Q ss_pred eeccceeeCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHHcCCcc--cCCccccCCcceEeeccC
Q 001212 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMG 1078 (1122)
Q Consensus 1014 fVPNDi~L~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~ivDrIfTRiG 1078 (1122)
.||.-.... +++.+|+||=.+||||.|-|..-....+..=+.+ |+---+.+ +.|-+|+|
T Consensus 11 ~~~~~~~~~----g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g 71 (195)
T 1w4r_A 11 LVPRGSKTR----GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDR 71 (195)
T ss_dssp --------C----CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHH
T ss_pred ccccCCCCc----eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccC
Confidence 455444332 3799999999999997777766666666543333 45222333 33666664
No 468
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=49.23 E-value=8.5 Score=43.80 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-+||+||-+.|||+++|.+|-
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 469
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=49.23 E-value=9 Score=36.87 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.8
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|.|+..+||||++++..-
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998753
No 470
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=49.07 E-value=8.8 Score=38.25 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 19 i~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999875
No 471
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=49.02 E-value=8.9 Score=37.71 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=17.1
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+.++||||++++..
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998864
No 472
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.02 E-value=8.1 Score=43.68 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEecCCCchHHHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1122)
-++|+||-+.||||++|.+|-.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 473
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.97 E-value=6.6 Score=43.45 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=18.5
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|+||.+.|||+++|.+|-
T Consensus 49 vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999998865
No 474
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=48.81 E-value=7.6 Score=45.96 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHH
Q 001212 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1122)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1122)
...+++|+|+.+.|||||+-|+|..+..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 3468999999999999999999987654
No 475
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=48.78 E-value=9 Score=37.75 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.8
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999875
No 476
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=48.69 E-value=8.8 Score=43.20 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
.++|.|++.+||||+|..+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68899999999999999873
No 477
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=48.68 E-value=14 Score=44.56 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=38.5
Q ss_pred ccccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEc-cCCcchhcccC
Q 001212 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1122)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~~~l~ 150 (1122)
.-+|.-|-+.|. |+.||.|.|+..+. .+...|.| |=|..|.+.++
T Consensus 412 ~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~ 457 (570)
T 3bdl_A 412 PRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPST 457 (570)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGG
T ss_pred CCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHH
Confidence 448999999999 99999999999987 56678888 88998887654
No 478
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=48.66 E-value=9.3 Score=38.67 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=17.4
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 479
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=48.64 E-value=9 Score=38.15 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.6
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999864
No 480
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=48.63 E-value=9 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+-.+||||+++.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999864
No 481
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=48.52 E-value=9 Score=38.52 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.6
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998865
No 482
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.05 E-value=9.3 Score=44.46 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
++-+||.||-+.|||++.|.+|-
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999999873
No 483
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=48.00 E-value=9.2 Score=45.20 Aligned_cols=22 Identities=41% Similarity=0.461 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+-++|+||.+.|||+++|.+|-
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999999998854
No 484
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=47.95 E-value=9.5 Score=44.74 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
..+++|+|..++||||+.|+++--
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998743
No 485
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.89 E-value=9.5 Score=37.32 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.5
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||++++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999998864
No 486
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.78 E-value=9.9 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.4
Q ss_pred eEEEEEecCCCchHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1122)
--++|.|+..+||||++++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999999875
No 487
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=47.75 E-value=9.8 Score=37.99 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.6
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 10 ki~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999874
No 488
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=47.64 E-value=9.5 Score=37.75 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||++++..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999875
No 489
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.59 E-value=9.9 Score=38.78 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.8
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999864
No 490
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=47.53 E-value=10 Score=37.94 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++.+.
T Consensus 26 i~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHh
Confidence 7899999999999999864
No 491
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=47.50 E-value=10 Score=37.29 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=18.0
Q ss_pred EEEEEecCCCchHHHHHHHH
Q 001212 1029 FILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1122)
-++|.|+..+||||+++++.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999875
No 492
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=47.40 E-value=13 Score=42.63 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHH
Q 001212 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
..+.|-||.++||||++++++-.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 468899999999999999976554
No 493
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=47.40 E-value=4.7 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1122)
.+.++|.|||+.||||++|.+|-..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998653
No 494
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=47.21 E-value=10 Score=43.57 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.9
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1122)
+||-|+--|||||++||.=+|
T Consensus 43 lLLLG~geSGKSTi~KQmkii 63 (402)
T 1azs_C 43 LLLLGAGESGKSTIVKQMRIL 63 (402)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCchhhHHHHHHHH
Confidence 688899999999999999665
No 495
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=47.18 E-value=8 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1122)
+++++|+||+++||||++..+|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999877654
No 496
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=46.66 E-value=10 Score=37.96 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVC 1048 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1122)
++|.|+..+||||+++++.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999998875
No 497
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=46.65 E-value=5.2 Score=37.99 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=36.0
Q ss_pred cccceeEEeccCCCeEEeEEEEeeeCCCCeEEEEccCCcchhcccCcceE
Q 001212 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKI 154 (1122)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~~~l~~e~~ 154 (1122)
-||.+|...|+ +..||.|+|++-...+ .+.|.+|||..=. +|-+|+|
T Consensus 8 ~vGq~V~ak~~-ngryy~~~V~~~~~~~-~y~V~F~DgS~s~-dl~PedI 54 (123)
T 2xdp_A 8 SVGQTVITKHR-NTRYYSCRVMAVTSQT-FYEVMFDDGSFSR-DTFPEDI 54 (123)
T ss_dssp CTTCCCCCCCC-CCCCCCCEEEEEEEEE-EEEEEETTSCEEE-EECGGGB
T ss_pred ccCCEEEEECC-CCcEEeEEEEEEeeEE-EEEEEcCCCCccC-CCCHhHc
Confidence 38888888898 5999999999988644 5999999998433 3444444
No 498
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=46.56 E-value=6.7 Score=43.47 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.5
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 001212 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1122)
++|+||-+.|||+++|.++-
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 89999999999999998765
No 499
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.47 E-value=8 Score=43.86 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.8
Q ss_pred ceEEEE--EecCCCchHHHHHHHHHH
Q 001212 1027 ASFILL--TGPNMGGKSTLLRQVCLA 1050 (1122)
Q Consensus 1027 ~~~~II--TGPNMgGKST~LRqvaLi 1050 (1122)
.+.++| +||-+.||||+++.++-.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 467889 999999999999988743
No 500
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=46.21 E-value=8.8 Score=42.20 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHH
Q 001212 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1122)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1122)
+++++++||.+.||||+++.+|-
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH
Confidence 46899999999999999999863
Done!