BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001213
(1122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 816 GWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 875
G+ ++TED T +H+RGWKS+Y R G P + Q RWATG +++
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391
Query: 876 FSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL 935
+N L + + QR+ YLN + F + +++ P + LF G I L
Sbjct: 392 LLKNP--LFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVL 449
Query: 936 SYL 938
+Y+
Sbjct: 450 AYM 452
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMM 629
+VY +RE+ + + KAG M+A + G ++ D DH R F+
Sbjct: 214 VVYSTRER----NEHAKAGNMSAALE----RLKGELVVVFDADHVPSRDFLARTVGYFVE 265
Query: 630 DRGGDRLCYVQFPQRFEGIDP-------SDRYANHNTVFFDVNMRALDGVMGPFYVGTGC 682
D L VQ P F DP DR N +F+ R LD G F+ G+
Sbjct: 266 D---PDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAA 322
Query: 683 LFRRIAL 689
+ RR AL
Sbjct: 323 VLRRRAL 329
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 142 MDILPCECDFKICRDCYIDAVKTGGGICPGCKEPY 176
++ PC C ++ICR C+ G+CP C++PY
Sbjct: 15 INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 147 CECDFKICRDCYIDAVKTGGGICPGCKEPYKNTDLDEVAVDNGRPLPLPPPAGMSKMERR 206
CE + + DC ++ G C E K DL E+ D+G P P+PP G + E++
Sbjct: 580 CEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQ 639
Query: 207 LSLM 210
L L+
Sbjct: 640 LYLV 643
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 142 MDILPCECDFKICRDCYIDAVKTGGGICPGCKEPY 176
++ PC C ++ICR C+ G+CP C++PY
Sbjct: 26 INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 144 ILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180
++PC+ F C DC I K G +CPGC +P + +
Sbjct: 17 MIPCKHVF--CYDCAILHEKKGDKMCPGCSDPVQRIE 51
>pdb|3QUW|A Chain A, Crystal Structure Of Yeast Mmf1
Length = 153
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 53 LGSSDFMNYTVHIPPTPDNQPMDPSISQKVEE--QYVSNSL 91
+ +++F+ + IP TPDN+P+ SIS+K E+ Q V N L
Sbjct: 48 MKANNFVYVSGQIPYTPDNKPVQGSISEKAEQVFQNVKNIL 88
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 143 DILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTDLD 182
D + C CR C + +K G CP C+ P TDL+
Sbjct: 35 DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit
(Irx3) Of Cellulose Synthase
Length = 93
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177
G C + G D ++ E + + EC F CR CY + G CP CK YK
Sbjct: 16 GQFCEICG-DQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 148 ECDFKICRDCYIDAVKTGGGICPGCKE 174
EC + C DC I A+++G CP C++
Sbjct: 72 ECLHRFCADCIITALRSGNKECPTCRK 98
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 148 ECDFKICRDCYIDAVKTGGGICPGCKE 174
EC + C DC I A+++G CP C++
Sbjct: 52 ECLHRFCADCIITALRSGNKECPTCRK 78
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 148 ECDFKICRDCYIDAVKTGGGICPGCKE 174
EC + C DC I A+++G CP C++
Sbjct: 71 ECLHRFCADCIITALRSGNKECPTCRK 97
>pdb|2NOX|A Chain A, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|B Chain B, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|C Chain C, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|D Chain D, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|E Chain E, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|F Chain F, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|G Chain G, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|H Chain H, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|I Chain I, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|J Chain J, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|K Chain K, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|L Chain L, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|M Chain M, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|N Chain N, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|O Chain O, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|P Chain P, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
Length = 281
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 513 GTHWPGTWMNPSSEHSRGDHAGIIQVM-----LKPPSDEPLLGTAEDTKLIDLTDVDIRL 567
G W G M+ + + S GD+ G+ Q++ L P +E L ++ ++ +
Sbjct: 9 GNGWHGAQMDFARDMSYGDYLGLDQILSAQHPLSPDHNEMLF-------IVQHQTTELWM 61
Query: 568 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSN 602
++++ R R G ++ A L R S IM
Sbjct: 62 KLMLHELRAARDGVKSDQLQPAFKMLARVSRIMDQ 96
>pdb|1FWR|A Chain A, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|B Chain B, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|C Chain C, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
Length = 213
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 370 PGIDVYVSTADPEKEPPLVTANTILS--ILAADYPVEKLACYVSDDGGALLTFEAMAEAA 427
PG+ + A E PL+ + +S +L DY +++ + ++ G + +A+A
Sbjct: 94 PGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFQFFPAEANGGVKALQAIAGPF 153
Query: 428 SFANVWVPFCRKHDIEPRNPESYFNLK 454
S V FC K I P N Y LK
Sbjct: 154 S----QVRFCPKGGISPANYRDYLALK 176
>pdb|1PSS|L Chain L, Crystallographic Analyses Of Site-Directed Mutants Of The
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1PST|L Chain L, Crystallographic Analyses Of Site-Directed Mutants Of The
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 266
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 12 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 67
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 68 EYGLGGA 74
>pdb|1FNP|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center Pro
L209-> Phe From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1FNQ|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center Pro
L209-> Glu From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1F6N|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center Pro
L209-> Tyr From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1YF6|L Chain L, Structure Of A Quintuple Mutant Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3V3Y|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
Strain Rv
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3ZUM|L Chain L, Photosynthetic Reaction Centre Mutant With Phe L146 Replaced
With Ala
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3DU2|L Chain L, E(L212)a Mutant Structure Of Photosynthetic Reaction Center
From Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3DTR|L Chain L, E(L212)q, L(L227)f Double Mutant Structure Of Photosynthetic
Reaction Center From Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1JH0|L Chain L, Photosynthetic Reaction Center Mutant With Glu L 205
Replaced To Leu
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|2RCR|L Chain L, Structure Of The Membrane-Bound Protein Photosynthetic
Reaction Center From Rhodobacter Sphaeroides
pdb|4RCR|L Chain L, Structure Of The Reaction Center From Rhodobacter
Sphaeroides R-26 And 2.4.1: Protein-Cofactor
(Bacteriochlorophyll, Bacteriopheophytin, And Carotenoid)
Interactions
pdb|1PCR|L Chain L, Structure Of The Photosynthetic Reaction Centre From
Rhodobacter Sphaeroides At 2.65 Angstroms Resolution:
Cofactors And Protein- Cofactor Interactions
pdb|1AIG|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The D+qb-Charge Separated State
pdb|1AIG|N Chain N, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The D+qb-Charge Separated State
pdb|1AIJ|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Neutral Dqaqb State
pdb|1AIJ|R Chain R, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Neutral Dqaqb State
pdb|1MPS|L Chain L, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
pdb|1QOV|L Chain L, Photosynthetic Reaction Center Mutant With Ala M260 Replaced
With Trp (Chain M, A260w)
pdb|1DS8|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Neutral Dqaqb State With The Proton
Transfer Inhibitor Cd2+
pdb|1DS8|R Chain R, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Neutral Dqaqb State With The Proton
Transfer Inhibitor Cd2+
pdb|1DV3|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Separated D+qaqb-State With The Proton
Transfer Inhibitor Cd2+
pdb|1DV3|R Chain R, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Separated D+qaqb-State With The Proton
Transfer Inhibitor Cd2+
pdb|1DV6|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Neutral Dqaqb State With The Proton
Transfer Inhibitor Zn2+
pdb|1DV6|R Chain R, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
In The Charge-Neutral Dqaqb State With The Proton
Transfer Inhibitor Zn2+
pdb|1E14|L Chain L, Photosynthetic Reaction Center Mutant With Phe M197 Replaced
With Arg (Chain M, Fm197r) And Gly M203 Replaced With Asp
(Chain M, Gm203d)
pdb|1E6D|L Chain L, Photosynthetic Reaction Center Mutant With Trp M115 Replaced
With Phe (Chain M, Wm115f) Phe M197 Replaced With Arg
(Chain M, Fm197r)
pdb|1JGW|L Chain L, Photosynthetic Reaction Center Mutant With Thr M 21 Replaced
With Leu
pdb|1JGX|L Chain L, Photosynthetic Reaction Center Mutant With Thr M 21 Replaced
With Asp
pdb|1JGY|L Chain L, Photosynthetic Reaction Center Mutant With Tyr M 76 Replaced
With Phe
pdb|1JGZ|L Chain L, Photosynthetic Reaction Center Mutant With Tyr M 76 Replaced
With Lys
pdb|1L9B|L Chain L, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|L Chain L, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|R Chain R, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1K6L|L Chain L, Photosynethetic Reaction Center From Rhodobacter Sphaeroides
pdb|1M3X|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
pdb|1KBY|L Chain L, Structure Of Photosynthetic Reaction Center With
Bacteriochlorophyll- Bacteriopheophytin Heterodimer
pdb|1OGV|L Chain L, Lipidic Cubic Phase Crystal Structure Of The Photosynthetic
Reaction Centre From Rhodobacter Sphaeroides
pdb|1RG5|L Chain L, Structure Of The Photosynthetic Reaction Centre From
Rhodobacter Sphaeroides Carotenoidless Strain R-26.1
pdb|1RGN|L Chain L, Structure Of The Reaction Centre From Rhodobacter
Sphaeroides Carotenoidless Strain R-26.1 Reconstituted
With Spheroidene
pdb|1RQK|L Chain L, Structure Of The Reaction Centre From Rhodobacter
Sphaeroides Carotenoidless Strain R-26.1 Reconstituted
With 3,4- Dihydrospheroidene
pdb|1UMX|L Chain L, Photosynthetic Reaction Center Mutant With Arg M267 Replaced
With Leu (Chain M, R267l)
pdb|2BOZ|L Chain L, Photosynthetic Reaction Center Mutant With Gly M203 Replaced
With Leu
pdb|1Z9K|A Chain A, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
pdb|2BNP|A Chain A, Lipidic Cubic Phase Grown Reaction Centre From Rhodobacter
Sphaeroides, Ground State
pdb|2BNS|A Chain A, Lipidic Cubic Phase Grown Reaction Centre From Rhodobacter
Sphaeroides, Excited State
pdb|2GNU|L Chain L, The Crystallization Of Reaction Center From Rhodobacter
Sphaeroides Occurs Via A New Route
pdb|2HG3|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Brominated Phosphatidylcholine
pdb|2HG9|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Tetrabrominated Phosphatidylcholine
pdb|2HH1|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylcholine
pdb|2HHK|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylglycerol
pdb|2HIT|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylethanolamine
pdb|2HJ6|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylserine
pdb|2J8C|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 8 In The
Neutral State
pdb|2J8D|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 8 In The
Charge- Separated State
pdb|2UWS|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State
pdb|2UWT|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State 2nd Dataset
pdb|2UWU|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Neutral State, 2nd Dataset
pdb|2UWV|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State, 3rd Dataset
pdb|2UWW|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Neutral State
pdb|2UX3|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Neutral State
pdb|2UX4|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Charge- Separated State, 2nd Dataset
pdb|2UX5|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Charge- Separated State
pdb|2UXJ|L Chain L, X-ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Neutral State
pdb|2UXK|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Charge-Separated State
pdb|2UXL|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Neutral State, 2nd Dataset
pdb|2UXM|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Charge-Separated State, 2nd Dataset
pdb|2JIY|L Chain L, Photosynthetic Reaction Center Mutant With Ala M149 Replaced
With Trp (Chain M, Am149w)
pdb|2JJ0|L Chain L, Photosynthetic Reaction Center Mutant With Ala M248 Replaced
With Trp (Chain M, Am248w)
pdb|3I4D|L Chain L, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
2.4.1
pdb|4H99|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Thr
pdb|4H9L|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Ser
pdb|4HBH|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Asn
pdb|4HBJ|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Gln
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3DSY|L Chain L, E(L212)q Mutant Structure Of Photosynthetic Reaction Center
From Rhodobacter Sphaeroides
pdb|3DTA|L Chain L, E(L212)q, N(M44)d Double Mutant Structure Of Photosynthetic
Reaction Center From Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1Z9J|A Chain A, Photosynthetic Reaction Center From Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1RVJ|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg H177 Replaced With His
pdb|1RY5|L Chain L, Photosynthetic Reaction Center Mutant From Rhodobacter
Sphaeroides With Asp L213 Replaced With Asn
pdb|1RZH|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Neutral
Dqaqb State (Trigonal Form)
pdb|1RZZ|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Neutral
Dqaqb State (Tetragonal Form)
pdb|1RZZ|R Chain R, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Neutral
Dqaqb State (Tetragonal Form)
pdb|1S00|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Separated
D+qaqb- State
pdb|1S00|R Chain R, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Separated
D+qaqb- State
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1YST|L Chain L, Structure Of The Photochemical Reaction Center Of A
Spheroidene Containing Purple Bacterium, Rhodobacter
Sphaeroides Y, At 3 Angstroms Resolution
Length = 273
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3V3Z|L Chain L, I(L177)h Mutant Structure Of Photosynthetic Reaction Center
From Rhodobacter Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|3ZUW|L Chain L, Photosynthetic Reaction Centre Mutant With Tyr L128 Replaced
With His
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|2WX5|L Chain L, Hexa-Coordination Of A Bacteriochlorophyll Cofactor In The
Rhodobacter Sphaeroides Reaction Centre
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|2GMR|L Chain L, Photosynthetic Reaction Center Mutant From Rhodobacter
Sphaeroides With Asp L210 Replaced With Asn
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1K6N|L Chain L, E(L212)a,D(L213)a Double Mutant Structure Of Photosynthetic
Reaction Center From Rhodobacter Sphaeroides
pdb|3DTS|L Chain L, E(L212)a, D(L213)a, R(M233)l Triple Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|3DU3|L Chain L, E(L212)a, D(L213)a, A(M249)y Triple Mutant Structure Of
Photosynthetic Reaction Center
pdb|3DUQ|L Chain L, E(L212)a, D(L213)a, N(M5)d Triple Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1056 LVGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLIAITISLLWVAINPPAG 1111
LVGG F FWV PF G G I+ WS ++ T + +++ PPA
Sbjct: 16 LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71
Query: 1112 TNQIGGS 1118
+GG+
Sbjct: 72 EYGLGGA 78
>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated
States Of Arthropod Hemocyanin Shows Unusual Differences
Length = 628
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 439 KHDIEPRNPES----YFNLKRDP--YKNKVKSDFVKDRRRVKR-----EYDEFKGEIKAM 487
KH I P N S Y++L +P Y V+++ D+ R +YDE EIKA
Sbjct: 418 KHGINPGNARSIKAKYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAPKYDELGNEIKAD 477
Query: 488 KLQR 491
+L+R
Sbjct: 478 ELRR 481
>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 628
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 439 KHDIEPRNPES----YFNLKRDP--YKNKVKSDFVKDRRRVKR-----EYDEFKGEIKAM 487
KH I P N S Y++L +P Y V+++ D+ R +YDE EIKA
Sbjct: 418 KHGINPGNARSIKARYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAPKYDELGNEIKAD 477
Query: 488 KLQR 491
+L+R
Sbjct: 478 ELRR 481
>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus
Subunit Ii Hemocyanin At 2.18 Angstroms Resolution:
Clues For A Mechanism For Allosteric Regulation
pdb|1NOL|A Chain A, Oxygenated Hemocyanin (Subunit Type Ii)
Length = 628
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 439 KHDIEPRNPES----YFNLKRDP--YKNKVKSDFVKDRRRVKR-----EYDEFKGEIKAM 487
KH I P N S Y++L +P Y V+++ D+ R +YDE EIKA
Sbjct: 418 KHGINPGNARSIKARYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAPKYDELGNEIKAD 477
Query: 488 KLQR 491
+L+R
Sbjct: 478 ELRR 481
>pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase Iii
Alpha-Subunit
pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase Iii
Alpha-Subunit
Length = 1220
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 365 GKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMA 424
G+S L G+ V +EPPLV A+ + I Y E L YVS G +L + +
Sbjct: 971 GRSGLVGLFAEV------EEPPLVEASPLDEITMLRYEKEALGIYVS--GHPVLRYPGLR 1022
Query: 425 EAAS 428
E AS
Sbjct: 1023 EVAS 1026
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 365 GKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMA 424
G+S L G+ V +EPPLV A+ + I Y E L YVS G +L + +
Sbjct: 971 GRSGLVGLFAEV------EEPPLVEASPLDEITMLRYEKEALGIYVS--GHPVLRYPGLR 1022
Query: 425 EAAS 428
E AS
Sbjct: 1023 EVAS 1026
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,926,965
Number of Sequences: 62578
Number of extensions: 1598811
Number of successful extensions: 2972
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2936
Number of HSP's gapped (non-prelim): 42
length of query: 1122
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1013
effective length of database: 8,152,335
effective search space: 8258315355
effective search space used: 8258315355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)