Query 001213
Match_columns 1122
No_of_seqs 438 out of 1642
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02248 cellulose synthase-li 100.0 1E-323 0E+00 2870.9 86.4 1084 24-1122 27-1135(1135)
2 PLN02400 cellulose synthase 100.0 9E-282 2E-286 2509.0 69.0 960 88-1113 4-1072(1085)
3 PLN02436 cellulose synthase A 100.0 1E-280 2E-285 2489.9 70.0 958 88-1112 4-1081(1094)
4 PLN02638 cellulose synthase A 100.0 2E-276 3E-281 2462.6 70.6 937 115-1112 9-1066(1079)
5 PLN02915 cellulose synthase A 100.0 2E-274 5E-279 2438.8 71.1 929 119-1112 11-1031(1044)
6 PLN02189 cellulose synthase 100.0 7E-270 2E-274 2399.0 71.3 956 88-1112 4-1027(1040)
7 PLN02195 cellulose synthase A 100.0 3E-267 7E-272 2366.4 70.9 913 120-1114 3-964 (977)
8 PF03552 Cellulose_synt: Cellu 100.0 6E-216 1E-220 1888.0 43.8 690 372-1114 1-715 (720)
9 PLN02190 cellulose synthase-li 100.0 6E-210 1E-214 1840.2 60.1 724 269-1102 7-754 (756)
10 PLN02893 Cellulose synthase-li 100.0 3E-200 7E-205 1765.8 64.3 708 268-1102 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 4.5E-62 9.7E-67 595.7 48.9 493 288-1078 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 1.3E-61 2.9E-66 593.1 48.4 475 290-1078 189-674 (852)
13 PRK05454 glucosyltransferase M 100.0 4.9E-32 1.1E-36 329.0 48.2 213 569-912 193-412 (691)
14 cd04191 Glucan_BSP_ModH Glucan 100.0 3.3E-30 7.2E-35 280.8 23.1 181 567-873 66-253 (254)
15 COG1215 Glycosyltransferases, 100.0 4.3E-28 9.3E-33 277.5 28.3 166 582-878 121-291 (439)
16 PRK14583 hmsR N-glycosyltransf 100.0 4.5E-26 9.7E-31 265.6 37.6 165 585-882 142-311 (444)
17 PRK11204 N-glycosyltransferase 99.9 5.1E-24 1.1E-28 245.0 37.4 173 569-879 110-287 (420)
18 PF14569 zf-UDP: Zinc-binding 99.9 9.6E-28 2.1E-32 213.5 3.7 63 115-179 1-64 (80)
19 TIGR03111 glyc2_xrt_Gpos1 puta 99.9 1.9E-23 4.1E-28 243.6 36.6 109 816-927 232-341 (439)
20 PRK14716 bacteriophage N4 adso 99.9 6.3E-23 1.4E-27 242.5 33.2 196 584-901 135-355 (504)
21 PRK11234 nfrB bacteriophage N4 99.9 1.8E-21 4E-26 238.4 29.6 172 584-877 132-335 (727)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 7.6E-22 1.6E-26 205.8 21.2 171 570-875 60-234 (234)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 1.6E-21 3.5E-26 205.7 22.2 167 569-871 62-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 1.6E-20 3.5E-25 200.0 21.6 163 585-878 71-237 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.8 9.4E-20 2E-24 191.8 22.4 173 570-877 58-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.8 8.6E-21 1.9E-25 198.3 7.9 165 570-870 60-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 2.1E-17 4.6E-22 201.2 31.5 170 585-876 141-342 (703)
28 cd04190 Chitin_synth_C C-termi 99.7 7.2E-18 1.6E-22 181.4 13.5 166 600-873 71-243 (244)
29 TIGR03472 HpnI hopanoid biosyn 99.7 4E-16 8.7E-21 178.5 27.7 164 570-871 100-272 (373)
30 cd04192 GT_2_like_e Subfamily 99.7 3.5E-16 7.7E-21 162.1 18.8 157 584-870 68-229 (229)
31 cd02520 Glucosylceramide_synth 99.7 1.3E-15 2.9E-20 157.5 17.1 122 584-870 72-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.7 2.9E-15 6.3E-20 157.1 19.1 166 585-873 64-234 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.6 9.7E-15 2.1E-19 155.2 21.4 51 821-873 200-250 (251)
34 PF13632 Glyco_trans_2_3: Glyc 99.6 3.5E-15 7.6E-20 153.3 16.5 137 605-871 1-143 (193)
35 COG2943 MdoH Membrane glycosyl 99.6 1.8E-11 4E-16 141.6 40.3 210 570-909 214-429 (736)
36 TIGR03469 HonB hopene-associat 99.5 1.2E-11 2.5E-16 142.6 27.3 49 366-419 36-84 (384)
37 cd02525 Succinoglycan_BP_ExoA 99.5 3.2E-12 6.9E-17 134.4 20.1 54 822-877 180-233 (249)
38 PF14570 zf-RING_4: RING/Ubox 99.5 1.9E-14 4.2E-19 119.4 2.6 47 129-177 2-48 (48)
39 cd06438 EpsO_like EpsO protein 99.1 5.8E-10 1.3E-14 114.2 13.4 101 585-690 63-168 (183)
40 cd06436 GlcNAc-1-P_transferase 99.1 8.5E-10 1.8E-14 114.5 14.2 102 585-690 65-176 (191)
41 PF13506 Glyco_transf_21: Glyc 99.1 8.7E-10 1.9E-14 114.7 12.5 97 583-690 15-114 (175)
42 cd04195 GT2_AmsE_like GT2_AmsE 99.0 1.1E-08 2.5E-13 105.0 18.1 68 570-649 57-124 (201)
43 cd04184 GT2_RfbC_Mx_like Myxoc 99.0 1.4E-08 2.9E-13 104.3 17.2 53 585-645 70-123 (202)
44 cd06433 GT_2_WfgS_like WfgS an 98.7 2.8E-07 6E-12 93.2 15.8 56 585-647 62-117 (202)
45 PF03142 Chitin_synth_2: Chiti 98.7 5.4E-06 1.2E-10 99.6 28.3 53 821-875 324-378 (527)
46 cd04186 GT_2_like_c Subfamily 98.7 5.5E-07 1.2E-11 88.4 15.3 65 585-690 61-125 (166)
47 cd02510 pp-GalNAc-T pp-GalNAc- 98.6 1.8E-06 3.8E-11 95.9 19.2 42 374-418 2-43 (299)
48 cd02522 GT_2_like_a GT_2_like_ 98.6 1.9E-06 4E-11 89.8 17.8 40 372-417 1-40 (221)
49 cd04196 GT_2_like_d Subfamily 98.6 1.8E-06 3.9E-11 88.9 16.3 108 570-690 56-165 (214)
50 cd06420 GT2_Chondriotin_Pol_N 98.5 3.6E-06 7.7E-11 85.0 16.4 74 585-690 66-139 (182)
51 PLN02726 dolichyl-phosphate be 98.5 6.6E-06 1.4E-10 88.6 19.2 59 570-641 70-128 (243)
52 cd02526 GT2_RfbF_like RfbF is 98.5 1.8E-06 3.9E-11 91.1 14.1 66 570-645 49-117 (237)
53 PF00535 Glycos_transf_2: Glyc 98.4 7.2E-07 1.6E-11 86.7 8.7 110 570-690 55-166 (169)
54 cd06442 DPM1_like DPM1_like re 98.4 1.3E-05 2.8E-10 83.7 17.8 59 571-642 56-114 (224)
55 COG5175 MOT2 Transcriptional r 98.4 1.3E-07 2.7E-12 105.1 1.7 50 125-178 16-65 (480)
56 cd06423 CESA_like CESA_like is 98.3 6.3E-06 1.4E-10 79.9 12.1 109 570-691 55-168 (180)
57 cd04185 GT_2_like_b Subfamily 98.3 1.8E-05 3.9E-10 81.8 16.0 55 586-646 64-118 (202)
58 cd06913 beta3GnTL1_like Beta 1 98.3 3.8E-05 8.2E-10 80.8 18.2 41 585-630 71-111 (219)
59 cd04179 DPM_DPG-synthase_like 98.1 8.5E-05 1.9E-09 75.1 14.4 110 570-692 56-166 (185)
60 cd04188 DPG_synthase DPG_synth 98.0 0.00013 2.9E-09 76.3 16.2 40 586-630 70-109 (211)
61 PRK10073 putative glycosyl tra 97.9 0.00026 5.7E-09 80.8 17.2 43 369-417 5-47 (328)
62 KOG2571 Chitin synthase/hyalur 97.9 0.0001 2.2E-09 92.2 13.5 49 822-872 550-598 (862)
63 PRK10018 putative glycosyl tra 97.8 0.00054 1.2E-08 76.8 17.1 52 569-630 61-112 (279)
64 cd04187 DPM1_like_bac Bacteria 97.8 0.00064 1.4E-08 69.2 14.8 105 570-691 57-161 (181)
65 TIGR01556 rhamnosyltran L-rham 97.7 0.00016 3.5E-09 79.5 10.5 69 568-645 45-113 (281)
66 cd00761 Glyco_tranf_GTA_type G 97.6 0.0015 3.2E-08 61.8 14.3 51 585-642 64-114 (156)
67 PTZ00260 dolichyl-phosphate be 97.4 0.0083 1.8E-07 68.9 18.9 52 585-641 149-200 (333)
68 COG1216 Predicted glycosyltran 97.3 0.009 1.9E-07 67.3 17.7 70 568-647 56-126 (305)
69 PRK10063 putative glycosyl tra 97.3 0.014 2.9E-07 64.3 18.3 44 370-417 1-45 (248)
70 PRK13915 putative glucosyl-3-p 97.1 0.0093 2E-07 67.9 14.9 51 585-641 102-152 (306)
71 PF10111 Glyco_tranf_2_2: Glyc 96.8 0.0044 9.6E-08 69.1 8.8 63 585-652 75-137 (281)
72 KOG2068 MOT2 transcription fac 95.9 0.0063 1.4E-07 69.2 3.5 55 121-180 247-301 (327)
73 PRK10714 undecaprenyl phosphat 95.1 0.67 1.4E-05 53.3 16.5 41 585-630 77-117 (325)
74 TIGR00570 cdk7 CDK-activating 94.6 0.034 7.3E-07 63.4 4.3 56 122-180 2-57 (309)
75 KOG2547 Ceramide glucosyltrans 89.6 0.44 9.5E-06 55.6 5.0 48 820-869 267-314 (431)
76 cd02514 GT13_GLCNAC-TI GT13_GL 89.3 3.1 6.8E-05 48.6 11.7 90 583-694 83-176 (334)
77 PF14446 Prok-RING_1: Prokaryo 86.8 0.44 9.6E-06 41.5 2.1 46 122-177 4-52 (54)
78 cd02511 Beta4Glucosyltransfera 86.3 8.1 0.00017 41.6 12.0 41 585-630 58-98 (229)
79 cd00162 RING RING-finger (Real 85.9 0.79 1.7E-05 35.9 3.1 44 125-175 1-44 (45)
80 KOG2068 MOT2 transcription fac 84.5 0.43 9.4E-06 54.8 1.3 30 150-179 1-32 (327)
81 COG0463 WcaA Glycosyltransfera 81.0 3.3 7.2E-05 39.6 5.7 47 369-421 2-48 (291)
82 smart00504 Ubox Modified RING 81.0 1.6 3.4E-05 37.7 3.1 46 125-179 3-48 (63)
83 PF05290 Baculo_IE-1: Baculovi 79.1 1.4 3.1E-05 44.9 2.5 52 123-180 80-135 (140)
84 KOG0006 E3 ubiquitin-protein l 75.8 2.1 4.5E-05 49.0 2.9 41 118-159 310-352 (446)
85 PF02364 Glucan_synthase: 1,3- 72.5 75 0.0016 41.4 15.5 75 820-898 408-483 (817)
86 PHA02929 N1R/p28-like protein; 71.9 4.2 9.1E-05 45.4 4.1 54 121-177 172-227 (238)
87 KOG3800 Predicted E3 ubiquitin 71.7 2.7 5.8E-05 47.8 2.5 52 125-179 2-53 (300)
88 PF13639 zf-RING_2: Ring finge 70.4 2.1 4.5E-05 35.0 1.0 43 125-173 2-44 (44)
89 PHA02862 5L protein; Provision 64.8 5.4 0.00012 41.4 2.8 49 123-178 2-54 (156)
90 PLN03208 E3 ubiquitin-protein 64.5 7.9 0.00017 42.0 4.2 51 121-179 16-81 (193)
91 smart00184 RING Ring finger. E 60.3 8.3 0.00018 28.9 2.6 39 126-172 1-39 (39)
92 KOG2932 E3 ubiquitin ligase in 59.7 5.6 0.00012 45.6 2.1 39 140-178 86-135 (389)
93 PF14447 Prok-RING_4: Prokaryo 57.4 6.2 0.00014 34.8 1.5 31 148-181 24-54 (55)
94 PRK00420 hypothetical protein; 55.9 5 0.00011 40.0 0.8 21 163-183 37-57 (112)
95 PF13923 zf-C3HC4_2: Zinc fing 53.2 9.4 0.0002 30.5 1.9 39 126-172 1-39 (39)
96 KOG0320 Predicted E3 ubiquitin 51.2 17 0.00038 39.0 3.9 46 124-176 132-177 (187)
97 COG4858 Uncharacterized membra 50.6 69 0.0015 34.9 8.2 62 1024-1085 96-159 (226)
98 PF13920 zf-C3HC4_3: Zinc fing 43.5 13 0.00029 31.1 1.4 45 124-177 3-48 (50)
99 PHA02825 LAP/PHD finger-like p 42.8 22 0.00048 37.6 3.1 51 122-179 7-61 (162)
100 KOG0311 Predicted E3 ubiquitin 42.4 3.9 8.4E-05 47.7 -2.6 47 125-178 45-91 (381)
101 PF04564 U-box: U-box domain; 41.0 19 0.00041 32.8 2.1 47 125-179 6-52 (73)
102 COG3813 Uncharacterized protei 40.6 23 0.00049 33.0 2.4 45 125-178 7-53 (84)
103 KOG0828 Predicted E3 ubiquitin 39.1 5.4E+02 0.012 32.1 13.9 40 1062-1108 462-505 (636)
104 PHA02926 zinc finger-like prot 38.3 31 0.00067 38.4 3.5 55 121-177 168-230 (242)
105 COG5432 RAD18 RING-finger-cont 38.2 16 0.00034 41.8 1.3 53 115-178 16-71 (391)
106 PRK12495 hypothetical protein; 38.1 20 0.00043 39.7 2.0 17 163-179 55-71 (226)
107 TIGR00599 rad18 DNA repair pro 34.7 29 0.00062 41.7 2.8 53 117-178 19-72 (397)
108 PF06906 DUF1272: Protein of u 34.2 43 0.00092 29.9 3.0 44 125-177 7-52 (57)
109 PF04641 Rtf2: Rtf2 RING-finge 32.6 35 0.00075 38.5 2.9 51 122-180 112-164 (260)
110 PF14471 DUF4428: Domain of un 31.7 25 0.00054 30.5 1.2 30 125-161 1-30 (51)
111 KOG3103 Rab GTPase interacting 31.4 2E+02 0.0043 32.6 8.2 77 983-1086 155-231 (249)
112 KOG2824 Glutaredoxin-related p 30.7 27 0.00059 39.9 1.6 40 120-173 226-280 (281)
113 PF15050 SCIMP: SCIMP protein 30.5 59 0.0013 33.1 3.7 40 962-1002 2-46 (133)
114 PF03966 Trm112p: Trm112p-like 30.1 9.7 0.00021 34.3 -1.6 24 155-178 42-65 (68)
115 PRK12438 hypothetical protein; 29.8 5E+02 0.011 35.1 12.7 44 1060-1103 261-304 (991)
116 PF00097 zf-C3HC4: Zinc finger 29.4 35 0.00075 27.1 1.6 40 126-172 1-41 (41)
117 KOG1734 Predicted RING-contain 28.8 19 0.00042 40.8 0.1 60 116-177 217-281 (328)
118 COG5540 RING-finger-containing 28.4 41 0.00089 38.9 2.5 52 120-176 320-371 (374)
119 COG1615 Uncharacterized conser 28.3 3.5E+02 0.0076 35.2 10.5 46 1058-1103 236-281 (885)
120 PF14634 zf-RING_5: zinc-RING 27.4 57 0.0012 26.8 2.6 43 126-174 2-44 (44)
121 KOG0317 Predicted E3 ubiquitin 25.1 73 0.0016 36.7 3.7 48 122-179 238-286 (293)
122 COG5220 TFB3 Cdk activating ki 24.3 21 0.00046 39.9 -0.6 53 123-177 10-64 (314)
123 KOG0457 Histone acetyltransfer 24.2 28 0.0006 41.9 0.3 29 124-158 15-45 (438)
124 PRK00068 hypothetical protein; 23.4 1.3E+03 0.029 31.3 14.9 43 1061-1103 262-304 (970)
125 COG5243 HRD1 HRD ubiquitin lig 22.9 76 0.0016 37.7 3.4 58 115-176 280-344 (491)
126 COG0601 DppB ABC-type dipeptid 22.8 1.3E+03 0.028 27.1 13.9 103 994-1111 211-314 (317)
127 PRK07220 DNA topoisomerase I; 22.6 45 0.00098 43.1 1.7 48 124-174 590-643 (740)
128 PF13712 Glyco_tranf_2_5: Glyc 22.2 2E+02 0.0043 31.6 6.3 47 586-639 42-89 (217)
129 PRK10726 hypothetical protein; 21.4 5.9E+02 0.013 25.5 8.5 42 932-977 48-89 (105)
130 PF14446 Prok-RING_1: Prokaryo 21.3 32 0.00068 30.4 -0.0 26 153-179 7-34 (54)
131 smart00647 IBR In Between Ring 21.1 54 0.0012 28.2 1.4 36 123-158 18-55 (64)
No 1
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=9.9e-324 Score=2870.91 Aligned_cols=1084 Identities=83% Similarity=1.400 Sum_probs=1006.6
Q ss_pred CCCCCccccccccCCCcccccccccccccCCC--CCcceeeEEcCCCCCCCCCCcccchhhhhhhhccccccCCCCcccc
Q 001213 24 PPLPPTVTFARRTSSGRYVNYSRDDLDSELGS--SDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTR 101 (1122)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1122)
+...++++|+|||+||||+|+||||+|++++. +||+||||||||||||||| +.++||||+|+++||||||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 102 (1135)
T PLN02248 27 SSSPQSVKFARRTSSGRYVSLSRDDLDLSGELSSSDYLNYTVHIPPTPDNQPM----AGKAEEQYVSNSIFTGGFNSVTR 102 (1135)
T ss_pred CCCCCCCCCCccCCCCcceeccccccccccccccccceeeEEeCCCCCCCccc----ccchhhhccccceecCCCCccch
Confidence 34446699999999999999999999988887 5999999999999999999 77899999999999999999999
Q ss_pred chhhhhhhccccCCCccCCCCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCCc
Q 001213 102 AHLMDKVIESEANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTDL 181 (1122)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d~ 181 (1122)
+|+|||+||++++|||+++++|++|.++||++++|.||+|++..||||+|+|||+||.|+.++| +.|||||++||.+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 103 AHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSG-GICPGCKEPYKVTDL 181 (1135)
T ss_pred hhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcC-CCCCCCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999996 899999999999987
Q ss_pred cccccCC-CCCCCCCCCCCCchhhhhhhcccccccccccCCCCCCCCccccccCCCCccccccccCCCCCCCCCCCCCCC
Q 001213 182 DEVAVDN-GRPLPLPPPAGMSKMERRLSLMKSTKSVLMRSQTGDFDHNRWLFETRGTYGYGNAIWPKDGNFGNGKDGEVA 260 (1122)
Q Consensus 182 e~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~w~~~~~~~~~~~~~~~ 260 (1122)
++++.|. ...++++.+. ..+++++++.+++ .+++.++|++||||+||++|+||+|||||+.|+++...++++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (1135)
T PLN02248 182 DDEVPDESSGALPLPPPG-GSKMDRRLSLMKS-NSLLMRSQTGDFDHNRWLFETKGTYGYGNAVWPKDDGYGDDGGGGG- 258 (1135)
T ss_pred cccccccccccccCCCCC-Ccccccccccccc-cchhccCCCCCCCCceeeeecccccccccccCccccccCCCCCccc-
Confidence 7776543 3456677664 3456677777766 6778889999999999999999999999999999866544333222
Q ss_pred CcccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccce
Q 001213 261 EPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLC 340 (1122)
Q Consensus 261 ~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~wfa~~W~l~q~~kw~ 340 (1122)
..+++||+|+||+||+++++++|+|||+++++||++|++||+||++|++.+++|+|+++|+||+||||+|+|+|++||+
T Consensus 259 -~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~ 337 (1135)
T PLN02248 259 -PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLC 337 (1135)
T ss_pred -cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2378999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhH
Q 001213 341 PINRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTF 420 (1122)
Q Consensus 341 Pi~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf 420 (1122)
||+|.||+|||++|||+|+++||+|+++||+||||||||||+||||++|+||||||||+|||+|||+|||||||||+|||
T Consensus 338 Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf 417 (1135)
T PLN02248 338 PINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTF 417 (1135)
T ss_pred ccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 001213 421 EAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQR--------- 491 (1122)
Q Consensus 421 ~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~--------- 491 (1122)
|||+|||+|||+||||||||+|||||||+||++|.++++++++++|++|||+|||||||||+|||.|...+
T Consensus 418 ~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~ 497 (1135)
T PLN02248 418 EAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNA 497 (1135)
T ss_pred HHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999885311
Q ss_pred -----------hcCCCCCcccccccccccccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCcccccccc
Q 001213 492 -----------QNRDDEPVESVKIPKATWMADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDL 560 (1122)
Q Consensus 492 -----------~~~~~~~~e~~~~~~~~wm~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~ 560 (1122)
++.+.+|.|.+++||+|||+|||||||||+++.++|+++|||+||||||+++++++..|..++++.+|+
T Consensus 498 ~~e~~~~~~~~~~~~~~~~e~~~~~~~~wm~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~ 577 (1135)
T PLN02248 498 REEIKAKKKQRESGGGDPSEPLKVPKATWMADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDF 577 (1135)
T ss_pred hHHHHhhhhhhhhcccccccccccccceeeccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccc
Confidence 122567788899999999999999999999999999999999999999999999999886667789999
Q ss_pred ccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEc
Q 001213 561 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQ 640 (1122)
Q Consensus 561 ~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQ 640 (1122)
+++|++||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||++||+|||||||++|+++||||
T Consensus 578 ~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQ 657 (1135)
T PLN02248 578 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQ 657 (1135)
T ss_pred cccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCcccccc-CcCccCCCcC
Q 001213 641 FPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCF-GRHKKHSSVT 719 (1122)
Q Consensus 641 fPQrF~nid~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~-~~~~~~~~~~ 719 (1122)
|||+|||+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||+..+. .++|++|| +++++.....
T Consensus 658 FPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~-~~~~~~~~~~~~~~~~~~~ 736 (1135)
T PLN02248 658 FPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEH-SGCFGSCKFTKKKKKETSA 736 (1135)
T ss_pred CCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccc-ccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999988665 34444444 4333321111
Q ss_pred CCchhhhhhcCCCC-chhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhh
Q 001213 720 NTPEENRALRMGDS-DDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAI 798 (1122)
Q Consensus 720 ~~~~~~~~~~~~~~-~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~ 798 (1122)
..+. + +++. ++++++...+++|||+|+.|++|+..++.+|++.++++++++++++|++.++++++++++++||+
T Consensus 737 ~~~~--~---~~~~~~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~ 811 (1135)
T PLN02248 737 SEPE--E---QPDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAI 811 (1135)
T ss_pred cccc--c---cccccccchhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHH
Confidence 1111 1 1111 22244555688999999999999988899999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhh
Q 001213 799 SVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 878 (1122)
Q Consensus 799 ~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr 878 (1122)
+|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++++||+|||+|++||++++
T Consensus 812 ~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr 891 (1135)
T PLN02248 812 SVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 891 (1135)
T ss_pred hhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhcc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001213 879 NNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGI 958 (1122)
Q Consensus 879 ~~pLl~~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGv 958 (1122)
++|++..++|+++||++|+++++||++++++++|+++|++||++|++++++.+..|++|++++++++++++++|++|+|+
T Consensus 892 ~~Pll~~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGv 971 (1135)
T PLN02248 892 NNALLASRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGI 971 (1135)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99988778999999999999999999999999999999999999999999988899999988888889999999999999
Q ss_pred chhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHH
Q 001213 959 ELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAI 1038 (1122)
Q Consensus 959 sl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAi 1038 (1122)
++++|||+||||+|+++++|++|++++++|+|++++++|+||+|+.+++.+++|+++|+|+||++++|+++++++|++|+
T Consensus 972 sl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAi 1051 (1135)
T PLN02248 972 TLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAI 1051 (1135)
T ss_pred cHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987777778999999999999999999999999999
Q ss_pred HHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCCCCCCCcc
Q 001213 1039 AVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGS 1118 (1122)
Q Consensus 1039 v~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~~~~~~~~ 1118 (1122)
++|++|++++.++.|+.+++++|+++|+++|+|||++|||||+||+||||+|||+++++++|||||+|+||.+.+++||+
T Consensus 1052 vvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~~~~~~~ 1131 (1135)
T PLN02248 1052 AVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGAAQIGGG 1131 (1135)
T ss_pred HHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCccccCce
Confidence 99999999877777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 001213 1119 FQFP 1122 (1122)
Q Consensus 1119 ~~~~ 1122 (1122)
||||
T Consensus 1132 ~~~~ 1135 (1135)
T PLN02248 1132 FQFP 1135 (1135)
T ss_pred ecCC
Confidence 9998
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=9e-282 Score=2509.03 Aligned_cols=960 Identities=49% Similarity=0.910 Sum_probs=843.2
Q ss_pred ccccccCCCCccccchhhhhhhccc--cCCCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhc
Q 001213 88 SNSLFTGGFNSVTRAHLMDKVIESE--ANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKT 164 (1122)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~ke 164 (1122)
++||++|||| ||||+ +|+.+ ...|+++++++|+||| |||+||+++|||+|||| ||+|||||+||||||||
T Consensus 4 ~~glvaGSh~---Rnelv--~i~~d~~~g~kp~~~~~gqiCqI--CGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERke 76 (1085)
T PLN02400 4 NAGMVAGSYR---RNELV--RIRHDSDSGPKPLKNLNGQICQI--CGDDVGVTETGDVFVACNECAFPVCRPCYEYERKD 76 (1085)
T ss_pred cccccccccc---cccee--eecccccccCCCccccCCceeee--cccccCcCCCCCEEEEEccCCCccccchhheeccc
Confidence 7899999999 99999 77754 3457899999999999 99999999999999999 99999999999999999
Q ss_pred CCCCCCCCCCCCCCC--------Cccccc-cCCCCCCCCCCCCCCc--hhhhh---hhcc----cccccccccCC--CCC
Q 001213 165 GGGICPGCKEPYKNT--------DLDEVA-VDNGRPLPLPPPAGMS--KMERR---LSLM----KSTKSVLMRSQ--TGD 224 (1122)
Q Consensus 165 g~~~CP~Ck~~Yk~~--------d~e~~~-~d~~~~~~~~~~~~~~--~~~~~---~~~~----~~~~~~~~~~~--~~~ 224 (1122)
|+|+||||||+|||+ |+|||+ +|.++||++....+.+ .+.++ .... .+++|+++++| ++|
T Consensus 77 Gnq~CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lt~g~~~s~e 156 (1085)
T PLN02400 77 GTQCCPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQWQGEDIELSSSSRHESQPIPLLTHGQPVSGE 156 (1085)
T ss_pred CCccCcccCCccccccCCCCCCcccccccchhhhhhhccccccccccccccccCccccCcccccCCCCccccCCcccCCC
Confidence 999999999999985 444554 5558899876421111 11111 1111 13567777655 444
Q ss_pred CC-----C------------------------------ccccccCC--CCccccccccCCCCCCCC--------------
Q 001213 225 FD-----H------------------------------NRWLFETR--GTYGYGNAIWPKDGNFGN-------------- 253 (1122)
Q Consensus 225 ~~-----~------------------------------~~~~~~~~--~~~g~g~~~w~~~~~~~~-------------- 253 (1122)
.. | .|.++++| +.|||||++||||+|+++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~ 236 (1085)
T PLN02400 157 IPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY 236 (1085)
T ss_pred CCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc
Confidence 43 1 12334444 679999999999998220
Q ss_pred ------CCCC--CCCCcccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 001213 254 ------GKDG--EVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEI 325 (1122)
Q Consensus 254 ------~~~~--~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~ 325 (1122)
+.++ .+.+|.+++|++++||+||++|++++|+|||+++++||++|++||+||++|++.+++|+|+++|+||+
T Consensus 237 ~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~ 316 (1085)
T PLN02400 237 HEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEI 316 (1085)
T ss_pred ccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 1111 11236678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCC
Q 001213 326 WFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEK 405 (1122)
Q Consensus 326 wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~K 405 (1122)
||||+|+|+|++||+||+|+||+|||++||++++ ++++||+||||||||||.||||++|+||||||||+|||+||
T Consensus 317 wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eK 391 (1085)
T PLN02400 317 WFALSWLLDQFPKWYPINRETYLDRLALRYDRDG-----EPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDK 391 (1085)
T ss_pred HHHHHHHHccCcccccccceeCHHHHHHHhccCC-----CcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999998764 36899999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 001213 406 LACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIK 485 (1122)
Q Consensus 406 ls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~ 485 (1122)
|||||||||||+||||||+|||+|||+||||||||+|||||||+||++|.++++++++|+|++|||+|||||||||+|||
T Consensus 392 lscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe 471 (1085)
T PLN02400 392 VSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRIN 471 (1085)
T ss_pred eEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCccccccccccc-ccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCcccccccccccc
Q 001213 486 AMKLQRQNRDDEPVESVKIPKATW-MADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVD 564 (1122)
Q Consensus 486 ~l~~~~~~~~~~~~e~~~~~~~~w-m~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~ 564 (1122)
+++++ .+++|+++| |+|||+||||| ++|||+|||||++++ |+ .|++|+
T Consensus 472 ~l~~~----------~~~~~~~~~~m~dgt~W~g~~--------~~dHp~iIqVll~~~------~~------~d~~g~- 520 (1085)
T PLN02400 472 ALVAK----------AQKIPEEGWTMQDGTPWPGNN--------PRDHPGMIQVFLGHS------GG------LDTDGN- 520 (1085)
T ss_pred HHHhh----------hccCCccccccccCccCCCCC--------CCCCchhhhhhhcCC------CC------cccccc-
Confidence 99743 458899999 99999999984 789999999999986 22 344553
Q ss_pred CCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCCcEEEEccCc
Q 001213 565 IRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGDRLCYVQFPQ 643 (1122)
Q Consensus 565 ~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~~vafVQfPQ 643 (1122)
+||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||+++|+|||||||+ .|+++|||||||
T Consensus 521 -~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQ 599 (1085)
T PLN02400 521 -ELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQ 599 (1085)
T ss_pred -cCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCc
Confidence 799999999999999999999999999999999999999999999999999999999999999998 599999999999
Q ss_pred cccCCCCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCC-CC-CccccccCcCccCCCcC-C
Q 001213 644 RFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEH-HP-GCCSCCFGRHKKHSSVT-N 720 (1122)
Q Consensus 644 rF~nid~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~-~~-~~~~~~~~~~~~~~~~~-~ 720 (1122)
||+|+|++|||+|||+|||+++|+|+||+|||+|+||||+|||+||||++||...+. .. ..|+|||+++++.+..+ .
T Consensus 600 rF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1085)
T PLN02400 600 RFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKY 679 (1085)
T ss_pred ccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeeeeccCCCccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999876432 11 12334554443322111 0
Q ss_pred ----------CchhhhhhcCCCCc-------hh---hhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCC
Q 001213 721 ----------TPEENRALRMGDSD-------DE---EMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPG 780 (1122)
Q Consensus 721 ----------~~~~~~~~~~~~~~-------~~---e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g 780 (1122)
.+...+++++++.+ ++ .++...++++||+|++|++|+. ++.+|.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~-~~~~~~--------------- 743 (1085)
T PLN02400 680 NIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATF-MEQGGI--------------- 743 (1085)
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHH-HHhcCC---------------
Confidence 01123455555432 21 1223568899999999999995 454432
Q ss_pred CccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHH
Q 001213 781 ALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDR 860 (1122)
Q Consensus 781 ~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~ 860 (1122)
+....++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++
T Consensus 744 ----~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~ 819 (1085)
T PLN02400 744 ----PPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDR 819 (1085)
T ss_pred ----CCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHH
Confidence 1223457899999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHhhhhhcchhhHHhhhcccccc--CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHH
Q 001213 861 LHQVLRWATGSVEIFFSRNNALLA--SPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYL 938 (1122)
Q Consensus 861 l~QR~RWA~G~lQI~~sr~~pLl~--~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~l 938 (1122)
++||+|||+|++||++++++|++. .++|+++||++|+++++||++++++++|+++|++||++|++++|..+...++++
T Consensus 820 L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~f 899 (1085)
T PLN02400 820 LNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWF 899 (1085)
T ss_pred HHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHH
Confidence 999999999999999999999885 378999999999999999999999999999999999999999998776666666
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEe
Q 001213 939 LTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIV 1018 (1122)
Q Consensus 939 lplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f 1018 (1122)
+.+|+++++++++|++|+|+++++||||||||+|+++|+|++|++++++|+|++++++|.||+|..+++ ..++++|+|
T Consensus 900 i~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~--~~~~ely~f 977 (1085)
T PLN02400 900 ILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED--GDFAELYVF 977 (1085)
T ss_pred HHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCcccceecCCccccc--ccccceeee
Confidence 667788889999999999999999999999999999999999999999999999999999999987643 257899999
Q ss_pred ecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHH
Q 001213 1019 KWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAIT 1098 (1122)
Q Consensus 1019 ~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~ 1098 (1122)
+||++++|+++++++||+|+++|++++++++++.|+.+++++|+++||++|+|||++|||+|++|+|+||++||++|+++
T Consensus 978 ~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~ 1057 (1085)
T PLN02400 978 KWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASI 1057 (1085)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHhheeecCCCCCC
Q 001213 1099 ISLLWVAINPPAGTN 1113 (1122)
Q Consensus 1099 ~~ll~v~i~~~~~~~ 1113 (1122)
||||||+|+||+...
T Consensus 1058 ~~l~~v~~~~~~~~~ 1072 (1085)
T PLN02400 1058 FSLLWVRIDPFVSDT 1072 (1085)
T ss_pred HHHHheeccccccCC
Confidence 999999999999763
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=1.1e-280 Score=2489.86 Aligned_cols=958 Identities=49% Similarity=0.919 Sum_probs=842.8
Q ss_pred ccccccCCCCccccchhhhhhhccc--cCCCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhc
Q 001213 88 SNSLFTGGFNSVTRAHLMDKVIESE--ANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKT 164 (1122)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~ke 164 (1122)
++||++|+|| |+||+ +|+.+ ..+|++++.++|+||| |||+||+++|||+|||| ||+|||||+||||||||
T Consensus 4 ~~~~~~gs~~---r~e~~--~~~~d~~~~~k~~~~~~~~iCqI--CGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e 76 (1094)
T PLN02436 4 GGRLIAGSHN---RNEFV--LINADEIARIRSVQELSGQTCQI--CGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE 76 (1094)
T ss_pred cccccccccc---cccee--EeccccccCCCCccccCCccccc--cccccCcCCCCCEEEeeccCCCccccchhhhhhhc
Confidence 7899999999 99999 77765 3367899999999999 99999999999999999 99999999999999999
Q ss_pred CCCCCCCCCCCCCCC--------Cccccc-cCCCCCCCCCCCCCC-----chh-hhhhhcc-------------------
Q 001213 165 GGGICPGCKEPYKNT--------DLDEVA-VDNGRPLPLPPPAGM-----SKM-ERRLSLM------------------- 210 (1122)
Q Consensus 165 g~~~CP~Ck~~Yk~~--------d~e~~~-~d~~~~~~~~~~~~~-----~~~-~~~~~~~------------------- 210 (1122)
|+|+|||||++|||+ |+|||+ +|.++||+++..... +.| +.++++.
T Consensus 77 g~~~Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1094)
T PLN02436 77 GNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPP 156 (1094)
T ss_pred CCccCcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccCCC
Confidence 999999999999975 444444 455789987721100 011 1112211
Q ss_pred cccccccccCC-CCCCC--C----------------------------ccccccCC--CCccccccccCCCCCCCC----
Q 001213 211 KSTKSVLMRSQ-TGDFD--H----------------------------NRWLFETR--GTYGYGNAIWPKDGNFGN---- 253 (1122)
Q Consensus 211 ~~~~~~~~~~~-~~~~~--~----------------------------~~~~~~~~--~~~g~g~~~w~~~~~~~~---- 253 (1122)
..++|+++.+| +++.. | .|.++++| ++|||||++||||+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~ 236 (1094)
T PLN02436 157 GSQIPLLTYGEEDVEISSDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN 236 (1094)
T ss_pred cCCCcccccCcccCccCCcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence 12456666654 34332 1 02344444 679999999999998220
Q ss_pred ---------------CCC--CCCCCcccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHH
Q 001213 254 ---------------GKD--GEVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWL 316 (1122)
Q Consensus 254 ---------------~~~--~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~l 316 (1122)
+.| .++.++.+++|++++||+||+++++++|+|||+++++||++|++||+||++|++.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~ 316 (1094)
T PLN02436 237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL 316 (1094)
T ss_pred hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 111 111225677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHH
Q 001213 317 WGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSI 396 (1122)
Q Consensus 317 W~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~ 396 (1122)
|+++|+||+||||+|+|+|++||+||+|+||+|||++||++|+ ++++||+||||||||||.||||++|+||||||
T Consensus 317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSi 391 (1094)
T PLN02436 317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEG-----KPSELASVDVFVSTVDPMKEPPLITANTVLSI 391 (1094)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCC-----CcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764 47899999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHH
Q 001213 397 LAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKRE 476 (1122)
Q Consensus 397 la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~Kre 476 (1122)
||+|||+|||||||||||||+||||||+|||+|||+||||||||+|||||||+||++|.++++++++++|++|||+||||
T Consensus 392 LA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKre 471 (1094)
T PLN02436 392 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKRE 471 (1094)
T ss_pred HhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccccccccc-ccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCccc
Q 001213 477 YDEFKGEIKAMKLQRQNRDDEPVESVKIPKATW-MADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDT 555 (1122)
Q Consensus 477 Yeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~w-m~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~ 555 (1122)
|||||+|||.|++. ++++|+++| |+|||+||||| ++|||+||||||+++ |.
T Consensus 472 YEe~K~RIe~l~~~----------~~~vp~~~~~m~dgt~W~g~~--------~~dHp~IIqVll~~~------~~---- 523 (1094)
T PLN02436 472 YEEFKVKINALVAT----------AQKVPEDGWTMQDGTPWPGNN--------VRDHPGMIQVFLGHS------GV---- 523 (1094)
T ss_pred HHHHHHHHHHHHhh----------cccCchhhhhhccCccCCCCC--------CCCCccceEEEecCC------CC----
Confidence 99999999999843 358899999 99999999985 689999999999986 21
Q ss_pred cccccccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCC
Q 001213 556 KLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGD 634 (1122)
Q Consensus 556 ~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~ 634 (1122)
.|++| .+||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||+++|+|||||||+ .|+
T Consensus 524 --~d~~g--~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~ 599 (1094)
T PLN02436 524 --RDVEG--NELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGK 599 (1094)
T ss_pred --ccccc--ccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCC
Confidence 23444 3799999999999999999999999999999999999999999999999999999999999999998 589
Q ss_pred cEEEEccCccccCCCCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCC-------CCcccc
Q 001213 635 RLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHH-------PGCCSC 707 (1122)
Q Consensus 635 ~vafVQfPQrF~nid~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~-------~~~~~~ 707 (1122)
++|||||||+|+|+|++|||+||++||||++|+|+||+|||+|+||||+|||+||||++||+..+.. ..||+|
T Consensus 600 ~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~ 679 (1094)
T PLN02436 600 KICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCL 679 (1094)
T ss_pred eeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeeeeeccCCcccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998764421 234566
Q ss_pred ccCcCccCCCcCCC--------chhhhhhcCCCC-------chh---hhhhcccCccccCcchhhccchhhhhcCCCCCC
Q 001213 708 CFGRHKKHSSVTNT--------PEENRALRMGDS-------DDE---EMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLAD 769 (1122)
Q Consensus 708 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~-------~~~---e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~ 769 (1122)
||+.++++++.++. ....+.+.+++. +++ ++....++++||+|++|++|+. ++.+|.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~-~~~~~~---- 754 (1094)
T PLN02436 680 CCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTL-LENGGV---- 754 (1094)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHH-HhhcCC----
Confidence 66666553221110 111233333332 222 2334568899999999999994 455542
Q ss_pred CCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcce
Q 001213 770 HPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAF 849 (1122)
Q Consensus 770 ~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af 849 (1122)
|+++.++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|
T Consensus 755 ---------------~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF 819 (1094)
T PLN02436 755 ---------------PRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAF 819 (1094)
T ss_pred ---------------CCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCchhh
Confidence 34445789999999999999999999999999999999999999999999999999998888899
Q ss_pred ecccCCCHHHHHHHhhhhhcchhhHHhhhcccccc--CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeee
Q 001213 850 RGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV 927 (1122)
Q Consensus 850 ~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~--~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~iv 927 (1122)
.|+||+|+.++++||+|||+|++||+++|++|++. .++|+|+||++|+++++||++++++++|+++|++||++|++++
T Consensus 820 ~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~Slp~liY~~lP~l~LL~G~~i~ 899 (1094)
T PLN02436 820 KGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTLPAICLLTGKFIV 899 (1094)
T ss_pred cCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 99999999999999999999999999999999974 4689999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceEeCCCCCCCC
Q 001213 928 QTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDD 1007 (1122)
Q Consensus 928 p~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~VTpK~~~~d 1007 (1122)
|..+..++++++.+|+++++++++|++|+|+++++||||||||+|+++++|++|++++++|+|++++++|+||+|..++
T Consensus 900 P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~~F~VTsK~~d~- 978 (1094)
T PLN02436 900 PEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAADD- 978 (1094)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcccceeccccccc-
Confidence 9877776667777888999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHhhcCCCccch
Q 001213 1008 VDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTI 1087 (1122)
Q Consensus 1008 ~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~ 1087 (1122)
+.++++|+|+||++++|+++++++|++|+++|++++++++++.|+.+++++|+++||++|+|||++|||+|++|+|||
T Consensus 979 --~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL~gr~~r~P~~ 1056 (1094)
T PLN02436 979 --GEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRMPTI 1056 (1094)
T ss_pred --ccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCee
Confidence 257789999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhheeecCCCCC
Q 001213 1088 VFVWSGLIAITISLLWVAINPPAGT 1112 (1122)
Q Consensus 1088 v~~~s~ll~~~~~ll~v~i~~~~~~ 1112 (1122)
|+|||++|+++||||||+||||+..
T Consensus 1057 v~v~s~lla~~~~l~~v~~~~~~~~ 1081 (1094)
T PLN02436 1057 ILVWSILLASILTLLWVRVNPFVSK 1081 (1094)
T ss_pred ehHHHHHHHHHHHHHHeeeccccCC
Confidence 9999999999999999999999976
No 4
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.5e-276 Score=2462.62 Aligned_cols=937 Identities=50% Similarity=0.938 Sum_probs=826.0
Q ss_pred CCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCC--------Cccccc
Q 001213 115 HPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNT--------DLDEVA 185 (1122)
Q Consensus 115 ~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~--------d~e~~~ 185 (1122)
+|++++.++|+||| |||+||+++|||+|||| ||+|||||+|||||||||+|+||||||+|||+ |+|||+
T Consensus 9 ~k~~~~~~~qiCqI--CGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~ 86 (1079)
T PLN02638 9 AKPMKHGGGQVCQI--CGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDG 86 (1079)
T ss_pred CCCccccCCceeee--cccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccC
Confidence 56899999999999 99999999999999999 99999999999999999999999999999975 444444
Q ss_pred --cCCCCCCCCCCCCCC------chh-hhhhhccc---------------ccccccccCC--CCCCC-----C-------
Q 001213 186 --VDNGRPLPLPPPAGM------SKM-ERRLSLMK---------------STKSVLMRSQ--TGDFD-----H------- 227 (1122)
Q Consensus 186 --~d~~~~~~~~~~~~~------~~~-~~~~~~~~---------------~~~~~~~~~~--~~~~~-----~------- 227 (1122)
+|.++||+++..... +.| +.+|++.. .++|+++++| ++|.. |
T Consensus 87 ~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 166 (1079)
T PLN02638 87 DADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPG 166 (1079)
T ss_pred cchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccccccCcc
Confidence 455889987642111 111 22333211 2457777655 34432 1
Q ss_pred -----------------ccccccCC--CCccccccccCCCCCCCC-----------------------CCCC-CC--CCc
Q 001213 228 -----------------NRWLFETR--GTYGYGNAIWPKDGNFGN-----------------------GKDG-EV--AEP 262 (1122)
Q Consensus 228 -----------------~~~~~~~~--~~~g~g~~~w~~~~~~~~-----------------------~~~~-~~--~~~ 262 (1122)
.|.++++| ++|||||++||+|+|+++ +.++ ++ .++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1079)
T PLN02638 167 AGGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVLMDD 246 (1079)
T ss_pred ccCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCcccccccc
Confidence 13455555 789999999999998210 1111 11 125
Q ss_pred ccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccceee
Q 001213 263 QELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPI 342 (1122)
Q Consensus 263 ~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi 342 (1122)
.++++++++||+||+++++++|+|||+++++||++|++||+||++|++.+++|+|+++|+||+||||+|+|+|++||+||
T Consensus 247 ~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv 326 (1079)
T PLN02638 247 ALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLPV 326 (1079)
T ss_pred ccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHH
Q 001213 343 NRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEA 422 (1122)
Q Consensus 343 ~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~a 422 (1122)
+|+||+|||++||++|+ ++++||+||||||||||.||||++|+||||||||+|||+|||||||||||||+|||||
T Consensus 327 ~R~t~~drL~~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~A 401 (1079)
T PLN02638 327 NRETYLDRLALRYDREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEA 401 (1079)
T ss_pred ccccCHHHHHHHhccCC-----CcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHH
Confidence 99999999999998764 3689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 001213 423 MAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESV 502 (1122)
Q Consensus 423 L~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~ 502 (1122)
|+|||+|||+||||||||+|||||||+||++|.++++++++++|++|||+|||||||||+|||.++++ .+
T Consensus 402 L~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~----------~~ 471 (1079)
T PLN02638 402 LSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAK----------AQ 471 (1079)
T ss_pred HHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhh----------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999853 45
Q ss_pred ccccccc-ccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCC
Q 001213 503 KIPKATW-MADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGY 581 (1122)
Q Consensus 503 ~~~~~~w-m~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~ 581 (1122)
++|+++| |+|||+||||| ++|||+||||+++++ |+ .|.+| ++||+||||||||||||
T Consensus 472 ~~p~~~~~m~dgt~W~g~~--------~~dHp~IiqVll~~~------~~------~d~~g--~~lP~LVYVSREKRPg~ 529 (1079)
T PLN02638 472 KVPEEGWIMQDGTPWPGNN--------TRDHPGMIQVFLGHS------GG------LDTEG--NELPRLVYVSREKRPGF 529 (1079)
T ss_pred ccCCccccccCCccCCCCC--------CCCCHHHHHHHhcCC------Cc------ccccc--ccccceEEEecccCCCC
Confidence 8899999 99999999997 789999999999986 22 24445 37999999999999999
Q ss_pred CCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCCcEEEEccCccccCCCCcChhhhhhhh
Q 001213 582 DHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGDRLCYVQFPQRFEGIDPSDRYANHNTV 660 (1122)
Q Consensus 582 ~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~~vafVQfPQrF~nid~~D~y~n~~~v 660 (1122)
+|||||||||||+||||+|||||||||||||||+|||++||+|||||||+ .|+++|||||||+|||+|++|||+||++|
T Consensus 530 ~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~v 609 (1079)
T PLN02638 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTV 609 (1079)
T ss_pred CcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCccccccee
Confidence 99999999999999999999999999999999999999999999999998 59999999999999999999999999999
Q ss_pred hhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCC-CCCccccccCcCccCC-CcCC-----------Cchhhhh
Q 001213 661 FFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEH-HPGCCSCCFGRHKKHS-SVTN-----------TPEENRA 727 (1122)
Q Consensus 661 Ffdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~-~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~ 727 (1122)
|||++|+|+||+|||+||||||+|||+||||++||+..+. ...+++|||+..++.. +.+. .....+.
T Consensus 610 ffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1079)
T PLN02638 610 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPV 689 (1079)
T ss_pred eeccccccccccCCccccccCcceeehhhcCcCCcccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 9999999999999999999999999999999999987542 2333445555533321 1110 0111223
Q ss_pred hcCCCCc---------hh---hhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHH
Q 001213 728 LRMGDSD---------DE---EMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVA 795 (1122)
Q Consensus 728 ~~~~~~~---------~~---e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 795 (1122)
+++++.+ ++ ..+...++++||+|++|++|+ +++++|.+ +...++++++
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~-~~~~~~~~-------------------~~~~~~s~l~ 749 (1079)
T PLN02638 690 FNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST-LMENGGVP-------------------QSATPESLLK 749 (1079)
T ss_pred cccccccccccccccchhhhhhhhhhhhhhhccccHHHHHHH-HHhhcCCC-------------------CCCCcHHHHH
Confidence 3333211 11 122345889999999999999 57787643 1223578999
Q ss_pred HhhhhcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHH
Q 001213 796 EAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 875 (1122)
Q Consensus 796 ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~ 875 (1122)
||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++++||+|||+|++||+
T Consensus 750 eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~ 829 (1079)
T PLN02638 750 EAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIL 829 (1079)
T ss_pred HHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchhee
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred hhhcccccc--CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHH
Q 001213 876 FSRNNALLA--SPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEI 953 (1122)
Q Consensus 876 ~sr~~pLl~--~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~ 953 (1122)
+++++|++. .++|+++||++|+++++||++++++++|+++|++||++|++++|..+..++++++.+|+++++++++|+
T Consensus 830 fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~ 909 (1079)
T PLN02638 830 FSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEM 909 (1079)
T ss_pred eccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 478999999999999999999999999999999999999999998776666666778889999999999
Q ss_pred HhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHH
Q 001213 954 KWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMV 1033 (1122)
Q Consensus 954 rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlll 1033 (1122)
+|+|+++++||||||||+|+++++|++|++++++|+|++++++|+||+|..++ +..++++|+|+||++++|++||+++
T Consensus 910 ~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK~~d~--~~~~~ely~f~wS~l~iP~ttl~ii 987 (1079)
T PLN02638 910 RWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDE--DGDFAELYMFKWTTLLIPPTTLLII 987 (1079)
T ss_pred HhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccccccc--cccccceeEecceehhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998754 3357899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCCC
Q 001213 1034 NLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGT 1112 (1122)
Q Consensus 1034 nLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~~ 1112 (1122)
||+|+++|+++++++++..|+.+++++|+++||++|+|||++|||||+||+||||+|||++|+++||||||+|+||+..
T Consensus 988 Nlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~ 1066 (1079)
T PLN02638 988 NLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTR 1066 (1079)
T ss_pred HHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccC
Confidence 9999999999999887778999999999999999999999999999999999999999999999999999999999976
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=2.2e-274 Score=2438.76 Aligned_cols=929 Identities=50% Similarity=0.937 Sum_probs=816.2
Q ss_pred CCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCC--------C-ccccc-cC
Q 001213 119 AGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNT--------D-LDEVA-VD 187 (1122)
Q Consensus 119 ~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~--------d-~e~~~-~d 187 (1122)
++.++|+||| |||+||+++|||+|||| ||+|||||+|||||+|||+|+|||||++|||+ | +||++ +|
T Consensus 11 ~~~~~~~c~i--CGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd 88 (1044)
T PLN02915 11 QSADAKTCRV--CGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDD 88 (1044)
T ss_pred cCCCcchhhc--cccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchh
Confidence 6789999999 99999999999999999 99999999999999999999999999999975 3 23333 44
Q ss_pred CCCCCCCCCCCCCchh-hhhhhcc----------cccccccccCCCCCCCCccccccCCCCccccccccCCCCCCCC---
Q 001213 188 NGRPLPLPPPAGMSKM-ERRLSLM----------KSTKSVLMRSQTGDFDHNRWLFETRGTYGYGNAIWPKDGNFGN--- 253 (1122)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~w~~~~~~~~--- 253 (1122)
.+++|+++.....+.+ +.++++. ..++++++. +++..+. .+.++|. ||||++||||+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~--~~g~~~wk~r~~~wk~~~ 163 (1044)
T PLN02915 89 FEDEFQIKSPQDHEPVHQNVFAGSENGDYNAQQWRPGGPAFSS--TGSVAGK-DLEAERE--GYGNAEWKDRVDKWKTRQ 163 (1044)
T ss_pred hhhhhccccccccchhhhhhccCCCCccccccccCCCCccccC--CCCcCCC-CcCcccc--CcCCHHHHHHHHHHHhhh
Confidence 4778877643222222 1222221 123455554 3444332 3333332 999999999999321
Q ss_pred -----------CC-CCCCCCcccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHH
Q 001213 254 -----------GK-DGEVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSV 321 (1122)
Q Consensus 254 -----------~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~ 321 (1122)
+. +.++.++.++++++++||+||+++++++|+|||+++++||++|++||+||++|++.+++|+|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~ 243 (1044)
T PLN02915 164 EKRGLVNKDDSDDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISV 243 (1044)
T ss_pred hhhccccccccCCCCCCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHH
Confidence 11 111123567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCC
Q 001213 322 VCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADY 401 (1122)
Q Consensus 322 ~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DY 401 (1122)
+||+||||+|+|+|++||+||+|+||+|||++|||++++ +++||+||||||||||.||||++|+||||||||+||
T Consensus 244 ~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~-----~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 318 (1044)
T PLN02915 244 ICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGE-----PNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDY 318 (1044)
T ss_pred HHHHHHHHHHHHccCccccccccccCHHHHHHHhccCCC-----cccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999997653 678999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHH
Q 001213 402 PVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFK 481 (1122)
Q Consensus 402 P~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk 481 (1122)
|+|||||||||||||+||||||+|||+|||+||||||||+|||||||+||++|.++++++++++|++|||+|||||||||
T Consensus 319 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K 398 (1044)
T PLN02915 319 PVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFK 398 (1044)
T ss_pred cccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCccccccccccc-ccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCcccccccc
Q 001213 482 GEIKAMKLQRQNRDDEPVESVKIPKATW-MADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDL 560 (1122)
Q Consensus 482 ~ri~~l~~~~~~~~~~~~e~~~~~~~~w-m~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~ 560 (1122)
+|||+|+++ ++++|+++| |+|||+|||||+ +|||+||||||+++ | .+|+
T Consensus 399 ~RIe~l~~~----------~~~~~~~~~~m~dgt~W~g~~~--------~dHp~IIqVll~~~------~------~~d~ 448 (1044)
T PLN02915 399 VRINALVAK----------AQKKPEEGWVMQDGTPWPGNNT--------RDHPGMIQVYLGSE------G------ALDV 448 (1044)
T ss_pred HHHHHHHhh----------hccCCcccccccCCccCCCCCC--------CCCccceEEeecCC------C------Cccc
Confidence 999999853 358889988 999999999983 79999999999986 2 2355
Q ss_pred ccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCCcEEEE
Q 001213 561 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGDRLCYV 639 (1122)
Q Consensus 561 ~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~~vafV 639 (1122)
+|+ +||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||+++|+|||||||+ .|+++|||
T Consensus 449 ~g~--~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afV 526 (1044)
T PLN02915 449 EGK--ELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYV 526 (1044)
T ss_pred ccC--ccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEE
Confidence 564 799999999999999999999999999999999999999999999999999999999999999998 59999999
Q ss_pred ccCccccCCCCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCC-------CCCccccccCcC
Q 001213 640 QFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEH-------HPGCCSCCFGRH 712 (1122)
Q Consensus 640 QfPQrF~nid~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~-------~~~~~~~~~~~~ 712 (1122)
||||||+|+|++|||+|||+||||++|+|+||+|||+||||||+|||+||||++||...+. ...+|+|||+.+
T Consensus 527 QFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1044)
T PLN02915 527 QFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGG 606 (1044)
T ss_pred eCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999865321 123455566655
Q ss_pred ccCCCcCCC--c-------------------------------hhhhhhcCCCCch-------hh----hhhcccCcccc
Q 001213 713 KKHSSVTNT--P-------------------------------EENRALRMGDSDD-------EE----MNLSLFPKKFG 748 (1122)
Q Consensus 713 ~~~~~~~~~--~-------------------------------~~~~~~~~~~~~~-------~e----~~~~~~~~~fg 748 (1122)
+|+++..+. . ...+.++++++++ .| +....++++||
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG 686 (1044)
T PLN02915 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFG 686 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhcC
Confidence 543322100 0 0112333333222 11 12245789999
Q ss_pred CcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHH
Q 001213 749 NSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVT 828 (1122)
Q Consensus 749 ~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~T 828 (1122)
+|++|++|+. ++.+|.+ ...+++++++||++||||+||++|+||+||||.|+|+|||+.|
T Consensus 687 ~S~~fi~S~~-~~~~~~~-------------------~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~T 746 (1044)
T PLN02915 687 QSPVFIASTL-MEDGGLP-------------------EGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILT 746 (1044)
T ss_pred CcHHHHHHHH-HhhcCCC-------------------CCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHH
Confidence 9999999994 4555432 2234678999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhcccccc--CCCcchhhhhhhhhhhhhhhhH
Q 001213 829 GYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SPKMKLLQRIAYLNVGIYPFTS 906 (1122)
Q Consensus 829 glrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~--~~~Lsl~QRL~Yl~~~ly~l~s 906 (1122)
|++||++||||+||+|++++|.|+||+|+.++++||+|||+|++||++++++|++. .++|+++||++|+++++||+++
T Consensus 747 G~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~s 826 (1044)
T PLN02915 747 GFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTS 826 (1044)
T ss_pred HHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999985 5799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHH
Q 001213 907 IFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGL 986 (1122)
Q Consensus 907 l~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aL 986 (1122)
+++++|+++|++||++|++++|..+..+.+|++.+|+++++++++|++|+|+++++|||+||||+|+++++|++|+++++
T Consensus 827 lp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~i 906 (1044)
T PLN02915 827 IPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGL 906 (1044)
T ss_pred HHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997766666777778888889999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Q 001213 987 LKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWV 1066 (1122)
Q Consensus 987 LK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wv 1066 (1122)
+|+|++++++|+||+|+.+++ ++.++++|+|+||++++|+++++++|++|+++|++++++++++.|+.+++++|+++|+
T Consensus 907 LKvLg~se~~F~VTsK~~d~~-~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wv 985 (1044)
T PLN02915 907 LKVLGGVDTNFTVTSKAADDE-ADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWV 985 (1044)
T ss_pred HHHhcccCCcceecCCccccc-hhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 999999999999999987653 4467899999999999999999999999999999999987777899999999999999
Q ss_pred HHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCCC
Q 001213 1067 LAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGT 1112 (1122)
Q Consensus 1067 l~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~~ 1112 (1122)
++|+|||++|||+|+||+||||++||++|+++||||||+|+||+..
T Consensus 986 vv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~ 1031 (1044)
T PLN02915 986 IVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPK 1031 (1044)
T ss_pred HHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCC
Confidence 9999999999999999999999999999999999999999999976
No 6
>PLN02189 cellulose synthase
Probab=100.00 E-value=7e-270 Score=2398.96 Aligned_cols=956 Identities=49% Similarity=0.921 Sum_probs=825.6
Q ss_pred ccccccCCCCccccchhhhhhhccccCCCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCC
Q 001213 88 SNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGG 166 (1122)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~ 166 (1122)
++||++|+|| |++|+ +|+.+...|++++.++|+||| |||+||+|++|+.|||| ||+|||||+|||||||||+
T Consensus 4 ~~g~~~gs~~---r~~~~--~~~~~~~~k~~~~~~~~~C~i--Cgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~ 76 (1040)
T PLN02189 4 SAGLVAGSHN---RNELV--VIHGHEEPKPLRNLDGQVCEI--CGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGT 76 (1040)
T ss_pred cccccccccc---cccee--eeccccCCCCcccccCccccc--cccccCcCCCCCEEEeeccCCCccccchhhhhhhcCC
Confidence 6899999999 99999 677654456899999999999 99999999999999999 9999999999999999999
Q ss_pred CCCCCCCCCCCCC--------Cccccc-cCCCCCCCCCCCC-CCc----hh-hhhhhcc--------cccccccccCC--
Q 001213 167 GICPGCKEPYKNT--------DLDEVA-VDNGRPLPLPPPA-GMS----KM-ERRLSLM--------KSTKSVLMRSQ-- 221 (1122)
Q Consensus 167 ~~CP~Ck~~Yk~~--------d~e~~~-~d~~~~~~~~~~~-~~~----~~-~~~~~~~--------~~~~~~~~~~~-- 221 (1122)
|+||||||+|||+ |+|||+ +|.+++|+++... ... .| +.++++. ...+|+++.++
T Consensus 77 q~CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1040)
T PLN02189 77 QNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDENNQFPPVITGVRSR 156 (1040)
T ss_pred ccCcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCCCcCCCcccccCccc
Confidence 9999999999975 444444 4457888766421 111 11 1223221 12456666654
Q ss_pred --CCCCC------CccccccC---CC----Cc-cccc--------cccCCCCCCCC----CC--CCCC-CCcccccCCCC
Q 001213 222 --TGDFD------HNRWLFET---RG----TY-GYGN--------AIWPKDGNFGN----GK--DGEV-AEPQELMNKPW 270 (1122)
Q Consensus 222 --~~~~~------~~~~~~~~---~~----~~-g~g~--------~~w~~~~~~~~----~~--~~~~-~~~~~~~~~~~ 270 (1122)
+++.. +..-+.++ |. .| +.|. ..||||+|+++ +. +.++ .+|.+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~rv~~wk~~~~~~~~~~~~~~~d~~~~~~~~ 236 (1040)
T PLN02189 157 PVSGEFPIGSGYGHGEQMLSSSLHKRVHPYPVSEPGSAKWDEKKEGGWKERMDDWKMQQGNLGPDPDDYDADMALIDEAR 236 (1040)
T ss_pred cccCCcCccccccccccccCCcccCccCcccccCCCcccCCccccccHHHHHHHHHhhcccCCCCCCCCchhhhhcccCC
Confidence 33332 11001000 00 01 1122 34999999431 11 1111 22556788999
Q ss_pred CCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccceeeccccchhh
Q 001213 271 RPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNV 350 (1122)
Q Consensus 271 ~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~ 350 (1122)
+||+||+++++++|+|||+++++||++|++||+||++|++.+++|+|+++++||+||||+|+|+|++||+||+|+||+||
T Consensus 237 ~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~dr 316 (1040)
T PLN02189 237 QPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDR 316 (1040)
T ss_pred CCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhh
Q 001213 351 LKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFA 430 (1122)
Q Consensus 351 L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA 430 (1122)
|++||++|++ +++||+||||||||||.||||++|+||||||||+|||+|||||||||||||+||||||+|||+||
T Consensus 317 L~~r~~~~~~-----~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA 391 (1040)
T PLN02189 317 LSLRYEREGE-----PNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFA 391 (1040)
T ss_pred HHHHhccCCC-----cccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHH
Confidence 9999987653 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-
Q 001213 431 NVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKATW- 509 (1122)
Q Consensus 431 ~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~w- 509 (1122)
|+||||||||||||||||+||++|.++++++++++|++|||+|||||||||+|||.++++ .+++|+++|
T Consensus 392 ~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~----------~~~~p~~~~~ 461 (1040)
T PLN02189 392 RKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAK----------AQKVPPEGWI 461 (1040)
T ss_pred HhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhh----------cCccCCccce
Confidence 999999999999999999999999999999999999999999999999999999999744 458889999
Q ss_pred ccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCchhh
Q 001213 510 MADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGA 589 (1122)
Q Consensus 510 m~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGA 589 (1122)
|+|||+||||| ++|||+||||+++++ |+ .|.+| .+||+||||||||||||+|||||||
T Consensus 462 m~dGt~W~g~~--------~~dHp~IiQVll~~~------~~------~d~~g--~~lP~LVYVSREKrPg~~Hh~KAGA 519 (1040)
T PLN02189 462 MQDGTPWPGNN--------TRDHPGMIQVFLGHS------GG------HDTEG--NELPRLVYVSREKRPGFQHHKKAGA 519 (1040)
T ss_pred eccCccCCCCC--------CCCCHHHHHHHhcCC------CC------ccccc--cccceeEEEeccCCCCCCcccchhh
Confidence 99999999996 689999999999986 22 23334 3799999999999999999999999
Q ss_pred hHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCCcEEEEccCccccCCCCcChhhhhhhhhhhhhhhh
Q 001213 590 MNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRA 668 (1122)
Q Consensus 590 LNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~~vafVQfPQrF~nid~~D~y~n~~~vFfdi~~~g 668 (1122)
||+|+||||+|||||||||||||||+|||++||+|||||||+ .|+++|||||||+|||++++|||+||++|||+++|+|
T Consensus 520 MNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~G 599 (1040)
T PLN02189 520 MNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKG 599 (1040)
T ss_pred HHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecc
Confidence 999999999999999999999999999999999999999997 5889999999999999999999999999999999999
Q ss_pred hcccCCccccccccchhhhhhcCCCCCCCCCC-CCC-cccccc-CcCccCCCcCCCchhhhhhcCCCCch--h-hhhhcc
Q 001213 669 LDGVMGPFYVGTGCLFRRIALYGFDPPRAKEH-HPG-CCSCCF-GRHKKHSSVTNTPEENRALRMGDSDD--E-EMNLSL 742 (1122)
Q Consensus 669 lDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-e~~~~~ 742 (1122)
+||+|||+||||||+|||+||||++||+..+. ... |+++|| +++++.......... ...++..++ + .....+
T Consensus 600 lDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 677 (1040)
T PLN02189 600 LDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKNGLNGE--VAALGGMESDKEMLMSQMN 677 (1040)
T ss_pred cccCCCccccccCceeeeeeeeccCcccccccccccccchhhhcccccccccccccccc--cccccccchhhhhhhhhhh
Confidence 99999999999999999999999999876442 122 222333 333221111100000 011111111 1 122345
Q ss_pred cCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCc
Q 001213 743 FPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSV 822 (1122)
Q Consensus 743 ~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsV 822 (1122)
++++||+|++|++|+.. +.++.+ ....++++++||++|+||+||++|+||+||||.|+|+
T Consensus 678 ~~~~fG~S~~fi~S~~~-~~~~~~-------------------~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSv 737 (1040)
T PLN02189 678 FEKKFGQSAIFVTSTLM-EEGGVP-------------------PSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSI 737 (1040)
T ss_pred hHhhhccchhhhhhhhh-hhcCCC-------------------CCCCcHHHHHHHHHhhccccccCCchhhccCeecccc
Confidence 78999999999999953 333321 1224678999999999999999999999999999999
Q ss_pred cchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhcccccc---CCCcchhhhhhhhhh
Q 001213 823 TEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA---SPKMKLLQRIAYLNV 899 (1122)
Q Consensus 823 TEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~---~~~Lsl~QRL~Yl~~ 899 (1122)
|||+.||++||++||||+||+|++++|.|+||+|+.++++||+|||+|++||++++++|++. .++|+++||++|+++
T Consensus 738 TED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~ 817 (1040)
T PLN02189 738 TEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNT 817 (1040)
T ss_pred ccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999985 367999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHH
Q 001213 900 GIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHL 979 (1122)
Q Consensus 900 ~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l 979 (1122)
++||++++++++|+++|++||++|++++|..+...+++++.+|+++++++++|++|+|+++++||||||||+|+++++|+
T Consensus 818 ~ly~~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~L 897 (1040)
T PLN02189 818 TIYPFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHL 897 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHH
Confidence 99999999999999999999999999999887777777777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHH
Q 001213 980 AAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGG 1059 (1122)
Q Consensus 980 ~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~ 1059 (1122)
+|++++++|+|++++++|+||+|..++ +.++++|+|+||++++|++||+++||+|+++|+++++.+++..|+.++++
T Consensus 898 favl~~ilKvlggs~~~F~VTsK~~~d---~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~ 974 (1040)
T PLN02189 898 FAVVQGLLKVLAGIDTNFTVTSKATDD---DEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGK 974 (1040)
T ss_pred HHHHHHHHHHhccCcccceeccccccc---cccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHH
Confidence 999999999999999999999998754 35679999999999999999999999999999999998777789999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCCC
Q 001213 1060 VFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGT 1112 (1122)
Q Consensus 1060 lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~~ 1112 (1122)
+|+++||++|+|||++|||||+||+||||+|||++|+++||||||+|+||+..
T Consensus 975 ~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~ 1027 (1040)
T PLN02189 975 LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLK 1027 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccC
Confidence 99999999999999999999999999999999999999999999999999976
No 7
>PLN02195 cellulose synthase A
Probab=100.00 E-value=3.1e-267 Score=2366.35 Aligned_cols=913 Identities=49% Similarity=0.923 Sum_probs=800.4
Q ss_pred CCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCC
Q 001213 120 GAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNTDLDEVAVDNGRPLPLPPPA 198 (1122)
Q Consensus 120 ~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d~e~~~~d~~~~~~~~~~~ 198 (1122)
++++++||| |||+||+|++|++|||| ||+|||||+|||||||||+|+||||||+||+ |++.+|.++||+-...
T Consensus 3 ~~~~~~c~~--cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~---~~~~~d~~~~~~~~~~- 76 (977)
T PLN02195 3 ESGAPICAT--CGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA---ENVFDDVETKHSRNQS- 76 (977)
T ss_pred cCCCcccee--cccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc---ccccchhhhhhccchh-
Confidence 567899999 99999999999999999 9999999999999999999999999999993 3333444556631111
Q ss_pred CCchhhhhhhcc------cccccccccCCCCCCCCccccccCCCCccccccccCCCCCCCC-------------C---CC
Q 001213 199 GMSKMERRLSLM------KSTKSVLMRSQTGDFDHNRWLFETRGTYGYGNAIWPKDGNFGN-------------G---KD 256 (1122)
Q Consensus 199 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~w~~~~~~~~-------------~---~~ 256 (1122)
.+..++++. .+++++++. .+++.. .+|||++||||+|+++ + ++
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~~~~ 141 (977)
T PLN02195 77 ---TMASHLNDTQDVGIHARHISSVST-VDSELN-----------DEYGNPIWKNRVESWKDKKNKKKKSAKKKEAHKAQ 141 (977)
T ss_pred ---hhhhhcccCcCCCCCCcccccccc-CCCccc-----------CccCCHHHHHHHHHHHHhhhhhccccccccccccC
Confidence 111112111 123333332 222221 2499999999998320 0 01
Q ss_pred ---CCCCCcccccCCCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 001213 257 ---GEVAEPQELMNKPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLL 333 (1122)
Q Consensus 257 ---~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~wfa~~W~l 333 (1122)
+++.++.++ ||.++||+||+++++++|+|||+++++||++|++||+||++|++.+++|+|+++++||+||||+|+|
T Consensus 142 ~~~~~~~~~~~~-~~~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll 220 (977)
T PLN02195 142 IPPEQQMEEKPS-ADAYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVL 220 (977)
T ss_pred CCCccCCccccc-ccccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 111124454 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceeeccccchhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCC
Q 001213 334 DQLPKLCPINRVTDLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDD 413 (1122)
Q Consensus 334 ~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDD 413 (1122)
+|++||+||+|+||+|||++||++|+ ++++||+||||||||||.||||++|+||||||||+|||+||||||||||
T Consensus 221 ~q~~Kw~Pv~R~t~~drL~~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDD 295 (977)
T PLN02195 221 DQFPKWSPINRETYIDRLSARYEREG-----EPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDD 295 (977)
T ss_pred hcccccccccceECHHHHHHHhccCC-----CcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecC
Confidence 99999999999999999999998764 4799999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001213 414 GGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQN 493 (1122)
Q Consensus 414 G~s~lTf~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~ 493 (1122)
|||+||||||+|||+|||+||||||||||||||||+||++|.++++++++|+|++|||+|||||||||+|||.++..
T Consensus 296 GgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~--- 372 (977)
T PLN02195 296 GAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAK--- 372 (977)
T ss_pred CchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCCCCccccccccccc-ccCCCCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEE
Q 001213 494 RDDEPVESVKIPKATW-MADGTHWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVY 572 (1122)
Q Consensus 494 ~~~~~~e~~~~~~~~w-m~dgt~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvY 572 (1122)
.+++|+++| |+|||+||||| ++|||+|||||++++ |. .|++|+ +||+|||
T Consensus 373 -------~~~~~~~~~~m~d~t~W~g~~--------~~dHp~IIqVll~~~------~~------~d~~g~--~lP~LVY 423 (977)
T PLN02195 373 -------AQKTPEEGWTMQDGTPWPGNN--------TRDHPGMIQVFLGET------GA------RDIEGN--ELPRLVY 423 (977)
T ss_pred -------cccCCcccccccCCccCCCCC--------CCCCcchhhhhccCC------CC------cccccc--cCceeEE
Confidence 357888888 99999999986 789999999999876 21 244553 7999999
Q ss_pred EEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCCcEEEEccCccccCCCCc
Q 001213 573 VSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGDRLCYVQFPQRFEGIDPS 651 (1122)
Q Consensus 573 vSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~~vafVQfPQrF~nid~~ 651 (1122)
|||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+|||||||+ .|+++|||||||+|+|++++
T Consensus 424 VSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~i~~~ 503 (977)
T PLN02195 424 VSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDGIDRS 503 (977)
T ss_pred EeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred ChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCC--CCcc-ccccCcCccCCCcCC--------
Q 001213 652 DRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHH--PGCC-SCCFGRHKKHSSVTN-------- 720 (1122)
Q Consensus 652 D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~--~~~~-~~~~~~~~~~~~~~~-------- 720 (1122)
|+|+|++++|||++|+|+||+|||+||||||+|||+||||++||+..+.. .++| +|||++.++.....+
T Consensus 504 D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (977)
T PLN02195 504 DRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSCCCPTKKKPEQDPSEIYRDAKR 583 (977)
T ss_pred CCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccccccccccccccccccchhhcccccc
Confidence 99999999999999999999999999999999999999999998764321 1122 345555544322110
Q ss_pred CchhhhhhcCCCC---chhhh----hhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhh
Q 001213 721 TPEENRALRMGDS---DDEEM----NLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDAST 793 (1122)
Q Consensus 721 ~~~~~~~~~~~~~---~~~e~----~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 793 (1122)
.....+..++++. ++.|. ...+++++||+|++|++|+ +++.+|.+. .+.++++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~-~~~~~~~~~-------------------~~~~~~~ 643 (977)
T PLN02195 584 EDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIEST-LMENGGVPE-------------------SANPSTL 643 (977)
T ss_pred ccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHH-HHHhcCCCC-------------------CCCcHHH
Confidence 0011222223221 21111 2245789999999999999 567776432 2346789
Q ss_pred HHHhhhhcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhh
Q 001213 794 VAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 873 (1122)
Q Consensus 794 ~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQ 873 (1122)
++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++++||+|||+|++|
T Consensus 644 l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~lq 723 (977)
T PLN02195 644 IKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVE 723 (977)
T ss_pred HHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchhh
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHhhhcccccc---CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHH
Q 001213 874 IFFSRNNALLA---SPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILAL 950 (1122)
Q Consensus 874 I~~sr~~pLl~---~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~sl 950 (1122)
|++++++|++. .++|+++||++|+++++||++++++++|+++|++||++|++++|..+..++++++.+|++++++++
T Consensus 724 I~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~~ 803 (977)
T PLN02195 724 IFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSV 803 (977)
T ss_pred hhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999974 378999999999999999999999999999999999999999998877677777788889999999
Q ss_pred HHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHH
Q 001213 951 LEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITI 1030 (1122)
Q Consensus 951 Le~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tL 1030 (1122)
+|++|+|+++++||||||||+|+++++|++|++++++|+|++++++|+||+|..++ +.++++|+|+||++++|++||
T Consensus 804 lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~dd---~~~~~~Y~f~~S~l~iP~ttl 880 (977)
T PLN02195 804 LELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAADD---TEFGELYMVKWTTLLIPPTSL 880 (977)
T ss_pred HHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccccc---cchhcceeccceehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998753 357899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCC
Q 001213 1031 MMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPA 1110 (1122)
Q Consensus 1031 lllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~ 1110 (1122)
+++||+|+++|++++++++++.|+.+++++|+++||++|+|||++|||||+||+||||+|||++|+++||||||+||||+
T Consensus 881 ~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~ 960 (977)
T PLN02195 881 LIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFV 960 (977)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeccccc
Confidence 99999999999999998878889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 001213 1111 GTNQ 1114 (1122)
Q Consensus 1111 ~~~~ 1114 (1122)
...+
T Consensus 961 ~~~~ 964 (977)
T PLN02195 961 GKTD 964 (977)
T ss_pred cCCC
Confidence 7643
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=5.7e-216 Score=1888.00 Aligned_cols=690 Identities=60% Similarity=1.085 Sum_probs=637.6
Q ss_pred ccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCCCCCccccc
Q 001213 372 IDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYF 451 (1122)
Q Consensus 372 VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~IepR~Pe~YF 451 (1122)
||||||||||.||||++|+||||||||+|||+|||||||||||||+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-ccCCCCCCCccCCCCCCCCCC
Q 001213 452 NLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKATW-MADGTHWPGTWMNPSSEHSRG 530 (1122)
Q Consensus 452 s~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~w-m~dgt~w~g~~~~~~~~~~~~ 530 (1122)
+++.|+++++.+++|++|||+|||||||||+|||.++.+ .+++|+++| |+|||+|||+ +++
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~----------~~~~~~~~~~~~~~~~w~~~--------~~~ 142 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAK----------IQKVPEEGWTMQDGTPWPGN--------TRR 142 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhh----------hhcccccceeccCCCcCCCC--------CCc
Confidence 999999999999999999999999999999999999754 347899999 9999999884 799
Q ss_pred CcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEec
Q 001213 531 DHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLD 610 (1122)
Q Consensus 531 dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlD 610 (1122)
|||+||||++++++++ |.+| .+||+||||||||||+|+||+||||||||+||||+|||||||||||
T Consensus 143 dH~~iiqv~~~~~~~~------------~~~g--~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlD 208 (720)
T PF03552_consen 143 DHPGIIQVLLDNPGGK------------DVDG--NELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLD 208 (720)
T ss_pred CChhheEeeccCCCCc------------cccc--CcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEec
Confidence 9999999999987322 2333 2799999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHhhccC-CCcEEEEccCccccCCCCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhh
Q 001213 611 CDHYIYNSQALREGMCFMMDRG-GDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIAL 689 (1122)
Q Consensus 611 cD~y~nnp~~Lr~amcff~D~~-g~~vafVQfPQrF~nid~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~AL 689 (1122)
||||+|||+++|+|||||||++ |+++|||||||+|+|+++||+|+||+++||+++|+|+||+|||+||||||+|||+||
T Consensus 209 cD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al 288 (720)
T PF03552_consen 209 CDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREAL 288 (720)
T ss_pred ccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhh
Confidence 9999999999999999999995 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC-CCC--ccccccCcCccCCCcCCC--------chhhhhhcCCCCchh----------hhhhcccCcccc
Q 001213 690 YGFDPPRAKEH-HPG--CCSCCFGRHKKHSSVTNT--------PEENRALRMGDSDDE----------EMNLSLFPKKFG 748 (1122)
Q Consensus 690 yg~~p~~~~~~-~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~----------e~~~~~~~~~fg 748 (1122)
||++||...+. +.. ||+||++++|+.+..++. .+..+++++++.++. .++.++++++||
T Consensus 289 ~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG 368 (720)
T PF03552_consen 289 YGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFG 368 (720)
T ss_pred hCCCCCchhcccCcceeeeecccCCcccccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhc
Confidence 99999988654 222 355666766555432211 234577777775531 233467899999
Q ss_pred CcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHH
Q 001213 749 NSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVT 828 (1122)
Q Consensus 749 ~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~T 828 (1122)
+|++|++|+. ++.++ +++++.++++|+||++|+||+||++|+||+||||.|+|+|||+.|
T Consensus 369 ~S~~fi~S~~-~~~~~-------------------~~~~~~~~~~L~EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~T 428 (720)
T PF03552_consen 369 QSPEFIASTL-MAQGG-------------------VPRSPSPASLLEEAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLT 428 (720)
T ss_pred CCHHHHHHHH-HHhcC-------------------CCCCCChHHHHHHHHHHhcCCccccCCcccccceEEEeccccccc
Confidence 9999999995 34332 345556789999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccccC--CCcchhhhhhhhhhhhhhhhH
Q 001213 829 GYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLAS--PKMKLLQRIAYLNVGIYPFTS 906 (1122)
Q Consensus 829 glrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~--~~Lsl~QRL~Yl~~~ly~l~s 906 (1122)
|++||++||||+||+|++++|+|.||+||.+.|.|++|||.|++||+++||||++.+ ++|+++||++|++.++||++|
T Consensus 429 G~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~S 508 (720)
T PF03552_consen 429 GFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTS 508 (720)
T ss_pred ceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcCCchhccCCCCCcHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999965 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHH
Q 001213 907 IFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGL 986 (1122)
Q Consensus 907 l~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aL 986 (1122)
+|+++|+++|++||++|++++|+.+..++++++++|+++++++++|++|+|+++++||||||||+|.++++|++|+++++
T Consensus 509 ipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~i 588 (720)
T PF03552_consen 509 IPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGI 588 (720)
T ss_pred HHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhccCcHHHhhcccceeeehhhHHHHHHHHHHH
Confidence 99999999999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Q 001213 987 LKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWV 1066 (1122)
Q Consensus 987 LK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wv 1066 (1122)
+|+||+++++|+||+|+.++ ++++|+++|+|+||++++|++||+++||+|+++|++|++++++++|+++++++|+++||
T Consensus 589 LK~lg~s~t~F~VTsK~~dd-e~~~~~ely~f~wS~LfiP~tTllilNLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wV 667 (720)
T PF03552_consen 589 LKVLGGSETSFTVTSKVSDD-EDDKYAELYIFKWSPLFIPPTTLLILNLVAFVVGISRAINSGYGSWGPLLGQLFFSFWV 667 (720)
T ss_pred HHHHcCCccceeeccccccc-ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Confidence 99999999999999998874 45678899999999999999999999999999999999998888899999999999999
Q ss_pred HHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCCCCC
Q 001213 1067 LAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQ 1114 (1122)
Q Consensus 1067 l~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~~~~ 1114 (1122)
++|+|||++|||+|++|+||||++||++||++|+||||+||||+++..
T Consensus 668 vv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~ 715 (720)
T PF03552_consen 668 VVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTT 715 (720)
T ss_pred HHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCC
Confidence 999999999999999999999999999999999999999999998755
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=6e-210 Score=1840.20 Aligned_cols=724 Identities=33% Similarity=0.591 Sum_probs=639.1
Q ss_pred CCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccceeeccccch
Q 001213 269 PWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDL 348 (1122)
Q Consensus 269 ~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~ 348 (1122)
+..||.+++++++++ ||++.+++++++++||+||++|++.++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 557899999999996 899999999999999999999998776 6899999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHh
Q 001213 349 NVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAAS 428 (1122)
Q Consensus 349 ~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~ 428 (1122)
|||++|| ++||+||||||||||.||||++|+||||||||+|||+|||||||||||||+||||||.|||+
T Consensus 83 ~~l~~r~-----------~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~ 151 (756)
T PLN02190 83 DRLDERV-----------HDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASK 151 (756)
T ss_pred HHHHHhh-----------ccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHH
Confidence 9999998 36999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccc
Q 001213 429 FANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKAT 508 (1122)
Q Consensus 429 FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~ 508 (1122)
|||+||||||||||||||||+||+++. +++..++|++|||+|||||||||+||+.++
T Consensus 152 FA~~WvPFCrK~~IepRaPe~YF~~~~---~~~~~~~f~~e~~~~K~eYee~k~ri~~a~-------------------- 208 (756)
T PLN02190 152 FAKIWVPFCKKYNVRVRAPFRYFLNPP---VATEDSEFSKDWEMTKREYEKLSRKVEDAT-------------------- 208 (756)
T ss_pred HHhhhcccccccCCCcCCHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHHhhc--------------------
Confidence 999999999999999999999999754 333457999999999999999999997743
Q ss_pred cccCCCCCCC--ccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCc
Q 001213 509 WMADGTHWPG--TWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKK 586 (1122)
Q Consensus 509 wm~dgt~w~g--~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~K 586 (1122)
++++|++ .|.++.++|+++|||+|||||++++ |..++ +.+||+||||||||||+|+||||
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~~~------~~~~~---------~~~lP~LVYvSREKrP~~~Hh~K 270 (756)
T PLN02190 209 ---GDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWENK------GGVGD---------EKEVPHLVYISREKRPNYLHHYK 270 (756)
T ss_pred ---cCCCCcccCCcccccCCCCCCCCccceEEEecCC------CCccc---------cccCceEEEEeccCCCCCCcccc
Confidence 2456766 4677778899999999999999986 21112 24899999999999999999999
Q ss_pred hhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccC--CCcEEEEccCccccCCCCcChhhhhhhhhhhh
Q 001213 587 AGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRG--GDRLCYVQFPQRFEGIDPSDRYANHNTVFFDV 664 (1122)
Q Consensus 587 AGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~--g~~vafVQfPQrF~nid~~D~y~n~~~vFfdi 664 (1122)
|||||||+||||+|||||||||||||||+|||+++|+|||||||+. ++++|||||||+|+ |+|+||++|||++
T Consensus 271 AGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~ 345 (756)
T PLN02190 271 AGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSY 345 (756)
T ss_pred cchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEE
Confidence 9999999999999999999999999999999999999999999973 46899999999998 8899999999999
Q ss_pred hhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccC
Q 001213 665 NMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFP 744 (1122)
Q Consensus 665 ~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 744 (1122)
+|+|+||+|||+|+||||+|||+||||++||+..+.. +... .. +. +.....+++
T Consensus 346 ~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~~------------~~~~---~~--~~---------~~~~~~~~~ 399 (756)
T PLN02190 346 LGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDDG------------SLSS---VA--TR---------EFLAEDSLA 399 (756)
T ss_pred eeccccccCCcccccCCcceEeeeecCCCcccccccc------------cccc---cc--cc---------cccchhhhh
Confidence 9999999999999999999999999999988765331 0000 00 00 001112356
Q ss_pred ccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccc
Q 001213 745 KKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTE 824 (1122)
Q Consensus 745 ~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTE 824 (1122)
++||+|++|++|+. +++++++. |++ ..+++++||++|+||+||++|+||+||||.|+|+||
T Consensus 400 ~~fg~s~~f~~s~~-~~~~~~~~----------~~~--------~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitE 460 (756)
T PLN02190 400 REFGNSKEMVKSVV-DALQRKPN----------PQN--------SLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAE 460 (756)
T ss_pred hhcCCcHHHHHHHH-HHhccCCC----------Ccc--------chHHHHHHHHhhcccCCCCCCchhhccCcccceeec
Confidence 89999999999993 44443211 111 124799999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhcccccc--CCCcchhhhhhhhhhhhh
Q 001213 825 DVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SPKMKLLQRIAYLNVGIY 902 (1122)
Q Consensus 825 Di~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~--~~~Lsl~QRL~Yl~~~ly 902 (1122)
|+.||++||++||||+||+|++++|.|++|+++.++++||+|||+|++||++++++|++. .++|+++||++|++.++
T Consensus 461 D~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~- 539 (756)
T PLN02190 461 DLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT- 539 (756)
T ss_pred hHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999986 48999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHH
Q 001213 903 PFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAV 982 (1122)
Q Consensus 903 ~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Av 982 (1122)
|++++++++|+++|++||++|++++|... . +.+++.+++++++++++|++|+|+++++||||||||+|+++++|++|+
T Consensus 540 ~~~sip~l~Y~~lP~l~Ll~g~~i~P~~~-~-~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~ 617 (756)
T PLN02190 540 CLRSIPELIYCLLPAYCLLHNSALFPKGV-Y-LGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSI 617 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCcc-H-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHH
Confidence 99999999999999999999999999763 2 334445567778889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCceEeCCCCCC-------------CCcCccc-cceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 001213 983 LQGLLKVIAGIEISFTLTSKSGG-------------DDVDDEF-ADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYS 1048 (1122)
Q Consensus 983 i~aLLK~Lgg~~~~F~VTpK~~~-------------~d~~~~y-~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~ 1048 (1122)
+++++|+||+++++|+||+|..+ ++++++| +++|+|+||++++|++|++++|++|+++|+++++.+
T Consensus 618 ~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~ 697 (756)
T PLN02190 618 QDIILKLLGISKTVFIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRS 697 (756)
T ss_pred HHHHHHHhccccceEEEeeccccccccccccccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999753 2223343 579999999999999999999999999888876542
Q ss_pred ---ccccchhhhHHHHHHHHHHHhHHHHHHHHhhc-CCCccchhHHHHHHHHHHHHHh
Q 001213 1049 ---VIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGR-RGRTPTIVFVWSGLIAITISLL 1102 (1122)
Q Consensus 1049 ---~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~gR-kgr~P~~v~~~s~ll~~~~~ll 1102 (1122)
..+.|+. ++++++++|+++|++||++|||+| ||+||++|+++|++|+.+|-.+
T Consensus 698 ~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl~~kdkg~iP~s~~~~s~~l~~~f~~~ 754 (756)
T PLN02190 698 SYSHGGGGSG-LAEACGCILVVMLFLPFLKGLFEKGKYGIPLSTLSKAAFLAVLFVVF 754 (756)
T ss_pred hhccCccccc-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhc
Confidence 2234544 599999999999999999999954 4789999999999998887543
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=3.3e-200 Score=1765.76 Aligned_cols=708 Identities=33% Similarity=0.605 Sum_probs=636.7
Q ss_pred CCCCCceeeeccCCccccchhHHHHHHHHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHHHHHHHhhcccceeecccc
Q 001213 268 KPWRPLTRKLKIPAAIISPYRVIIFVRMAVLSLFLAWRIKHKNEDA-VWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVT 346 (1122)
Q Consensus 268 ~~~~pl~~~~~~~~~~~~~yR~~~~~~lv~l~~~l~~Ri~~~~~~~-~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t 346 (1122)
....||..+.+++++++ ||+++++++++|+++|+||++|.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~~--~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTIA--NRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCchH--HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 35678999999998875 999999999999999999999987664 899999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHH
Q 001213 347 DLNVLKDKFETPTPNNPTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEA 426 (1122)
Q Consensus 347 ~~~~L~~r~~~~~~~~p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Ea 426 (1122)
|+|||+++++ .++||+||||||||||.||||++|+||||||||+|||+|||+|||||||||+||||||.||
T Consensus 87 ~~~~L~~~~~---------~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Ea 157 (734)
T PLN02893 87 FIEHLEHYAK---------ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEA 157 (734)
T ss_pred CHHHHhhhcc---------cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHH
Confidence 9999997764 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhcCCCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccc
Q 001213 427 ASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPK 506 (1122)
Q Consensus 427 a~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~ 506 (1122)
|+|||+||||||||||||||||+||+++ .++|++|||+|||||||||+|||.++.. .++|+
T Consensus 158 a~FA~~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-----------~~~~~ 218 (734)
T PLN02893 158 AKFATHWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-----------GKVST 218 (734)
T ss_pred HHHHHhhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-----------CcCch
Confidence 9999999999999999999999999987 2467899999999999999999999732 24444
Q ss_pred cccccCC-----CCCCCccCCCCCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCC
Q 001213 507 ATWMADG-----THWPGTWMNPSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGY 581 (1122)
Q Consensus 507 ~~wm~dg-----t~w~g~~~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~ 581 (1122)
+.-|+++ +.|+ ++++++|||+||||+++++++ .|++|+ +||+|||||||||||+
T Consensus 219 ~~~~~~~~~~~f~~w~-------~~~~~~dH~~ivqV~l~~~~~------------~d~~g~--~lP~lvYvsReKrp~~ 277 (734)
T PLN02893 219 DYITCDQEREAFSRWT-------DKFTRQDHPTVIQVLLESGKD------------KDITGH--TMPNLIYVSREKSKNS 277 (734)
T ss_pred hhhhhcccccccccCc-------CCCCCCCCCceeeeeccCCCc------------cchhhc--cCCceEEEeCCCCCCC
Confidence 4224333 5553 478999999999999998621 244553 7999999999999999
Q ss_pred CCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc-CCCcEEEEccCccccCCCCcChhhhhhhh
Q 001213 582 DHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR-GGDRLCYVQFPQRFEGIDPSDRYANHNTV 660 (1122)
Q Consensus 582 ~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~-~g~~vafVQfPQrF~nid~~D~y~n~~~v 660 (1122)
+||+||||||+++||||+|||||||||||||||+|||++||+|||||+|+ .++++|||||||+|+|++++|+|+|++++
T Consensus 278 ~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~v 357 (734)
T PLN02893 278 PHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKR 357 (734)
T ss_pred CcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHH
Confidence 99999999999999999999999999999999999999999999999998 47899999999999999999999999999
Q ss_pred hhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhh
Q 001213 661 FFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNL 740 (1122)
Q Consensus 661 Ffdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 740 (1122)
||+++|+|+||+|||+||||||+|||+||||..+....+ +.
T Consensus 358 ff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~-------------------------------------~~-- 398 (734)
T PLN02893 358 LFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILP-------------------------------------EI-- 398 (734)
T ss_pred HHHHHhhcccccCCceeeccceEEEHHHhcCCCccccch-------------------------------------hh--
Confidence 999999999999999999999999999999963210000 00
Q ss_pred cccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccC
Q 001213 741 SLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYG 820 (1122)
Q Consensus 741 ~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~g 820 (1122)
..++++....+| ..+.++++||++|+||+||++|+||++|||.|+
T Consensus 399 ----~~~~~~~~~~~~-------------------------------~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~yg 443 (734)
T PLN02893 399 ----PELNPDHLVDKS-------------------------------IKSQEVLALAHHVAGCNYENQTNWGSKMGFRYG 443 (734)
T ss_pred ----hhcccccccccc-------------------------------cchHHHHHHhhhccccccccCCccccccceEec
Confidence 001111111111 124578999999999999999999999999999
Q ss_pred CccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhcccccc-CCCcchhhhhhhhhh
Q 001213 821 SVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA-SPKMKLLQRIAYLNV 899 (1122)
Q Consensus 821 sVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~-~~~Lsl~QRL~Yl~~ 899 (1122)
|+|||+.||++||++||||+||+|++++|.|++|+|+.++++||+|||+|++||+++++||++. .++|+++||++|++.
T Consensus 444 svtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl~Y~~~ 523 (734)
T PLN02893 444 SLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAHY 523 (734)
T ss_pred cccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHHHHHHH
Confidence 9999999999999999999999988889999999999999999999999999999999999875 489999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHH
Q 001213 900 GIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHL 979 (1122)
Q Consensus 900 ~ly~l~sl~~liylllP~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l 979 (1122)
++||++++++++|+++|++||++|++++|+.+..++++++++++++++++++|++|+|.++++|||+||+|+|.++++|+
T Consensus 524 ~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l 603 (734)
T PLN02893 524 AFWPIWSIPITIYAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFL 603 (734)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHH
Confidence 99999999999999999999999999999876655555556778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCceEeCCCCCCCCcCcccc-ceEEeec-ccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Q 001213 980 AAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFA-DLYIVKW-TSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLV 1057 (1122)
Q Consensus 980 ~Avi~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~-~~y~f~w-s~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~ 1057 (1122)
+|++++++|.||+++++|+||+|+.++++.++|+ ++|+|+| |++++|+++++++|++|+++|+++++.+. .|+.++
T Consensus 604 ~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~~--~~~~~~ 681 (734)
T PLN02893 604 FGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQR--NLEGLF 681 (734)
T ss_pred HHHHHHHHHHhcccCCceeecCCCcccccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhCC--chhHHH
Confidence 9999999999999999999999998776677886 7999996 88899999999999999999999998763 467788
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCC--CccchhHHHHHHHHHHHHHh
Q 001213 1058 GGVFFSFWVLAHLYPFAKGLMGRRG--RTPTIVFVWSGLIAITISLL 1102 (1122)
Q Consensus 1058 g~lf~~~Wvl~~l~Pf~~GL~gRkg--r~P~~v~~~s~ll~~~~~ll 1102 (1122)
+++++++|++++++||++||++|++ |||++|++||++|+.++.++
T Consensus 682 ~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 682 LQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999964 89999999999999887654
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=4.5e-62 Score=595.73 Aligned_cols=493 Identities=25% Similarity=0.391 Sum_probs=388.5
Q ss_pred hHHHHHH-HHHHHHHHHHHhccC-CCchhH---HHHHHHHHHHHHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCC
Q 001213 288 RVIIFVR-MAVLSLFLAWRIKHK-NEDAVW---LWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNN 362 (1122)
Q Consensus 288 R~~~~~~-lv~l~~~l~~Ri~~~-~~~~~~---lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~ 362 (1122)
|++.++. +++.+.|++||++.+ +.+..+ +.++++++|++..++.++..+..+.|.+|.+.+ .
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~-------------~ 123 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP-------------L 123 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC-------------C
Confidence 5555444 455678999999976 444332 567889999998888888888788888876421 1
Q ss_pred CCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcC
Q 001213 363 PTGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDI 442 (1122)
Q Consensus 363 p~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~I 442 (1122)
|..++.+|.|||+|+|| ||++.++.+|+.|++++|||.+|+.+||.|||++.=|...
T Consensus 124 ~~~~~~~P~VsViIP~y---NE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~-------------------- 180 (713)
T TIGR03030 124 PLDPEEWPTVDVFIPTY---NEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRND-------------------- 180 (713)
T ss_pred CCCcccCCeeEEEEcCC---CCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCcccccc--------------------
Confidence 12246799999999999 9999999999999999999999999999999987632110
Q ss_pred CCCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccccCCCCCCCccCC
Q 001213 443 EPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKATWMADGTHWPGTWMN 522 (1122)
Q Consensus 443 epR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~wm~dgt~w~g~~~~ 522 (1122)
+ ++.. +++.+-+.+++++.+
T Consensus 181 --------------~------~~~~-------~~~~~~~~~~~~l~~--------------------------------- 200 (713)
T TIGR03030 181 --------------P------DPEQ-------AEAAQRREELKEFCR--------------------------------- 200 (713)
T ss_pred --------------c------hhhh-------hhhhhhHHHHHHHHH---------------------------------
Confidence 0 0001 111111122222220
Q ss_pred CCCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCC
Q 001213 523 PSSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSN 602 (1122)
Q Consensus 523 ~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltn 602 (1122)
+ ..+.|+.|+++ +|+||||||++++. ++
T Consensus 201 -------------------------------------------~-~~v~yi~r~~n----~~~KAgnLN~al~~----a~ 228 (713)
T TIGR03030 201 -------------------------------------------K-LGVNYITRPRN----VHAKAGNINNALKH----TD 228 (713)
T ss_pred -------------------------------------------H-cCcEEEECCCC----CCCChHHHHHHHHh----cC
Confidence 0 02688988763 66899999999984 68
Q ss_pred CCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCc-------ChhhhhhhhhhhhhhhhhcccCCc
Q 001213 603 GPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPS-------DRYANHNTVFFDVNMRALDGVMGP 675 (1122)
Q Consensus 603 gpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~-------D~y~n~~~vFfdi~~~glDGlqgp 675 (1122)
|+||+++||||++ +|++|++++++|.+ ++++++||+||.|+|.++. +++.+++..||...++|+|.++++
T Consensus 229 gd~Il~lDAD~v~-~pd~L~~~v~~f~~--dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~ 305 (713)
T TIGR03030 229 GELILIFDADHVP-TRDFLQRTVGWFVE--DPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAA 305 (713)
T ss_pred CCEEEEECCCCCc-ChhHHHHHHHHHHh--CCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCe
Confidence 9999999999997 79999999999974 2799999999999987753 344677889999999999999999
Q ss_pred cccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccCccccCcchhhc
Q 001213 676 FYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVD 755 (1122)
Q Consensus 676 ~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~ 755 (1122)
+++||++++||+||..
T Consensus 306 ~~~Gs~~~iRR~al~~---------------------------------------------------------------- 321 (713)
T TIGR03030 306 FFCGSAAVLRREALDE---------------------------------------------------------------- 321 (713)
T ss_pred eecCceeEEEHHHHHH----------------------------------------------------------------
Confidence 9999999999999852
Q ss_pred cchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHhC
Q 001213 756 SIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNR 835 (1122)
Q Consensus 756 S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~r 835 (1122)
+| ||.++++|||++++++||.+
T Consensus 322 ------iG----------------------------------------------------Gf~~~~vtED~~l~~rL~~~ 343 (713)
T TIGR03030 322 ------IG----------------------------------------------------GIAGETVTEDAETALKLHRR 343 (713)
T ss_pred ------cC----------------------------------------------------CCCCCCcCcHHHHHHHHHHc
Confidence 22 78888999999999999999
Q ss_pred CCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccccCCCcchhhhhhhhhhhhhhhhHHHHHHHHHH
Q 001213 836 GWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFL 915 (1122)
Q Consensus 836 GWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~~~Lsl~QRL~Yl~~~ly~l~sl~~liylll 915 (1122)
||+++|++ ++.+.|++|+|+.++++||.||++|++|+++.+ +|++ .+++++.||++|+++++||+.+++.++|+++
T Consensus 344 G~~~~y~~--~~~~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~~-~pl~-~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~ 419 (713)
T TIGR03030 344 GWNSAYLD--RPLIAGLAPETLSGHIGQRIRWAQGMMQIFRLD-NPLL-KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTA 419 (713)
T ss_pred CCeEEEec--cccccccCCCCHHHHHHHHHHHhcChHHHHhhh-Cccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 456789999999999999999999999999754 6776 6899999999999999999999999999999
Q ss_pred HHHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001213 916 PALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEI 995 (1122)
Q Consensus 916 P~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~ 995 (1122)
|+++|++|..++++....+++|++|+++...+.. ....|.....||++ ++.+...++.+..++.+.+++++.
T Consensus 420 P~~~l~~~~~~~~~~~~~~~~~~lp~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 491 (713)
T TIGR03030 420 PLAYLFFGLNIFVASALEILAYALPHMLHSLLTN---SYLFGRVRWPFWSE-----VYETVLAVYLLPPVLVTLLNPKKP 491 (713)
T ss_pred HHHHHHhCCcceeCCHHHHHHHHHHHHHHHHHHH---HHHcCCeecchHHH-----HHHHHHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999888888888888876544321 22345555667753 555555567777778888999999
Q ss_pred ceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHH
Q 001213 996 SFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAK 1075 (1122)
Q Consensus 996 ~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~ 1075 (1122)
+|+||+|+...+. .+ .+.++.|+++++++|++|+++|++|....+. ...+.+++.+|.++|++-+.-
T Consensus 492 ~F~VT~Kg~~~~~--~~-------~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~ 558 (713)
T TIGR03030 492 KFNVTPKGELLDE--DY-------FSPLSRPYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGA 558 (713)
T ss_pred CceecCCCccccc--cc-------cchHHHHHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHH
Confidence 9999999875421 11 1257889999999999999999999864332 223456899999999988777
Q ss_pred HHh
Q 001213 1076 GLM 1078 (1122)
Q Consensus 1076 GL~ 1078 (1122)
++.
T Consensus 559 ~~~ 561 (713)
T TIGR03030 559 ALA 561 (713)
T ss_pred HHH
Confidence 774
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.3e-61 Score=593.14 Aligned_cols=475 Identities=25% Similarity=0.413 Sum_probs=377.1
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCc---hhHHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCCCCC
Q 001213 290 IIFVRMAVLSLFLAWRIKHK-NED---AVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNNPTG 365 (1122)
Q Consensus 290 ~~~~~lv~l~~~l~~Ri~~~-~~~---~~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p~~ 365 (1122)
++++.+++.+.|++||++.+ |.+ +..+.++.+++|+++.++.++..+..+.|..|.+.+ .|..
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~-------------~~~~ 255 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP-------------LPKD 255 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC-------------CCcc
Confidence 45566777789999999976 433 445667889999988888888878777788775311 1223
Q ss_pred CCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCCCC
Q 001213 366 KSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPR 445 (1122)
Q Consensus 366 ~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~IepR 445 (1122)
.+.+|.|||+|||| |||+.++.+||.+++++|||.+|+.|||.|||.++-|
T Consensus 256 ~~~~P~VsViIPtY---NE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------------------------- 306 (852)
T PRK11498 256 MSLWPTVDIFVPTY---NEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------------------------- 306 (852)
T ss_pred cCCCCcEEEEEecC---CCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH--------------------------
Confidence 46789999999999 9999999999999999999999999999999987511
Q ss_pred CcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccccCCCCCCCccCCCCC
Q 001213 446 NPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKATWMADGTHWPGTWMNPSS 525 (1122)
Q Consensus 446 ~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~wm~dgt~w~g~~~~~~~ 525 (1122)
+++.++
T Consensus 307 --------------------------------~~la~~------------------------------------------ 312 (852)
T PRK11498 307 --------------------------------RQFAQE------------------------------------------ 312 (852)
T ss_pred --------------------------------HHHHHH------------------------------------------
Confidence 001000
Q ss_pred CCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCE
Q 001213 526 EHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPF 605 (1122)
Q Consensus 526 ~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpf 605 (1122)
+ .+.|+.|+++ .|+||||+|..++. ++|+|
T Consensus 313 -----------------------------------------~-~v~yI~R~~n----~~gKAGnLN~aL~~----a~GEy 342 (852)
T PRK11498 313 -----------------------------------------V-GVKYIARPTH----EHAKAGNINNALKY----AKGEF 342 (852)
T ss_pred -----------------------------------------C-CcEEEEeCCC----CcchHHHHHHHHHh----CCCCE
Confidence 0 1567887653 46899999999984 68999
Q ss_pred EEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcC-------hhhhhhhhhhhhhhhhhcccCCcccc
Q 001213 606 ILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSD-------RYANHNTVFFDVNMRALDGVMGPFYV 678 (1122)
Q Consensus 606 IlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D-------~y~n~~~vFfdi~~~glDGlqgp~yv 678 (1122)
|+++||||++ ++++|+++|.+|..+ +++|+||+||.|+|.|+.+ .+.+++..||+..++|+|.+++++++
T Consensus 343 IavlDAD~ip-~pdfL~~~V~~f~~d--P~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~ 419 (852)
T PRK11498 343 VAIFDCDHVP-TRSFLQMTMGWFLKD--KKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFC 419 (852)
T ss_pred EEEECCCCCC-ChHHHHHHHHHHHhC--CCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccc
Confidence 9999999996 899999999987642 7999999999999977632 24567789999999999999999999
Q ss_pred ccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccCccccCcchhhccch
Q 001213 679 GTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIP 758 (1122)
Q Consensus 679 GTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~ 758 (1122)
||++++||+||..
T Consensus 420 Gs~aviRReaLee------------------------------------------------------------------- 432 (852)
T PRK11498 420 GSCAVIRRKPLDE------------------------------------------------------------------- 432 (852)
T ss_pred cceeeeEHHHHHH-------------------------------------------------------------------
Confidence 9999999999852
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHhCCCe
Q 001213 759 VAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWK 838 (1122)
Q Consensus 759 ~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWr 838 (1122)
+| ||.++++|||++++++||.+||+
T Consensus 433 ---VG----------------------------------------------------Gfd~~titED~dlslRL~~~Gyr 457 (852)
T PRK11498 433 ---IG----------------------------------------------------GIAVETVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred ---hc----------------------------------------------------CCCCCccCccHHHHHHHHHcCCE
Confidence 33 78888999999999999999999
Q ss_pred EEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccccCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001213 839 SVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLPAL 918 (1122)
Q Consensus 839 SvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP~l 918 (1122)
++|++ .+...|++|+|+.++++||.||++|++|+++. ++|++ +++|++.||++|+++++|++.+++.++|+++|++
T Consensus 458 v~yl~--~~~a~glaPesl~~~~~QR~RWarG~lQi~r~-~~pl~-~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~ 533 (852)
T PRK11498 458 SAYMR--IPQAAGLATESLSAHIGQRIRWARGMVQIFRL-DNPLT-GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLA 533 (852)
T ss_pred EEEEe--ccceeEECCCCHHHHHHHHHHHHHHHHHHHHH-hChhc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 35667999999999999999999999999975 57776 7899999999999999999999999999999999
Q ss_pred HHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCceE
Q 001213 919 SLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFT 998 (1122)
Q Consensus 919 ~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~F~ 998 (1122)
||++|+.++.+....+++|++|+++...++ ....+|.....||++ ++.+....+.....+...+++++.+|+
T Consensus 534 ~l~~gi~~i~a~~~~i~~y~lP~~~~~~l~---~~~~~g~~r~~~wse-----iye~v~a~~l~~~~~~~ll~p~~~~F~ 605 (852)
T PRK11498 534 FLLLHAYIIYAPALMIALFVLPHMIHASLT---NSRIQGKYRHSFWSE-----IYETVLAWYIAPPTTVALFNPHKGKFN 605 (852)
T ss_pred HHHhCChheeCChHHHHHHHHHHHHHHHHH---HHHhcCcchHhHHHH-----HHHHHHHHHHHHHHHHHHcCccCCCcc
Confidence 999999999887778888888887654332 223344444445532 445443333344445557889999999
Q ss_pred eCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHHHh
Q 001213 999 LTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLM 1078 (1122)
Q Consensus 999 VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~GL~ 1078 (1122)
||+|+...+. +. |.|. +..|+++++++|++|+++|++++..+.. ....+.+++.+|+++|++-+.-++.
T Consensus 606 VTpKg~~~~~-----~~--~~~~-~~~P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~~ 674 (852)
T PRK11498 606 VTAKGGLVEE-----EY--VDWV-ISRPYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAVA 674 (852)
T ss_pred cCCCCccccc-----cc--eehH-HHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999865421 22 3342 5679999999999999999999876432 2223456889999999877666664
No 13
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=4.9e-32 Score=329.04 Aligned_cols=213 Identities=20% Similarity=0.297 Sum_probs=167.6
Q ss_pred cEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhh-ccCCCcEEEEccCccccC
Q 001213 569 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMM-DRGGDRLCYVQFPQRFEG 647 (1122)
Q Consensus 569 ~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~-D~~g~~vafVQfPQrF~n 647 (1122)
++.|..|+++ .++||||+|.++|.++ .+++||++||||+++ .+++|++.+.+|. | +++|.||+|+.+.|
T Consensus 193 ~i~yr~R~~n----~~~KaGNl~~~~~~~~--~~~eyivvLDADs~m-~~d~L~~lv~~m~~d---P~vGlVQt~~~~~n 262 (691)
T PRK05454 193 RIFYRRRRRN----VGRKAGNIADFCRRWG--GAYDYMVVLDADSLM-SGDTLVRLVRLMEAN---PRAGLIQTLPVAVG 262 (691)
T ss_pred cEEEEECCcC----CCccHHHHHHHHHhcC--CCcCEEEEEcCCCCC-CHHHHHHHHHHHhhC---cCEEEEeCCccCcC
Confidence 4889888764 5689999999998654 578999999999997 7999999999997 5 79999999999988
Q ss_pred CCCcChhhhh----hhhhhhhhhhhhcccCC--ccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCC
Q 001213 648 IDPSDRYANH----NTVFFDVNMRALDGVMG--PFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNT 721 (1122)
Q Consensus 648 id~~D~y~n~----~~vFfdi~~~glDGlqg--p~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1122)
.+ ..|+.- ..++.++...|++.+|| ..|.|+|+++||+|+... | |
T Consensus 263 ~~--slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~------------~----g----------- 313 (691)
T PRK05454 263 AD--TLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEH------------C----G----------- 313 (691)
T ss_pred CC--CHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHh------------c----C-----------
Confidence 75 344432 34555667788887774 469999999999999631 1 1
Q ss_pred chhhhhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhc
Q 001213 722 PEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVI 801 (1122)
Q Consensus 722 ~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~ 801 (1122)
+.++.|
T Consensus 314 -------------------------------------lp~L~g------------------------------------- 319 (691)
T PRK05454 314 -------------------------------------LPPLPG------------------------------------- 319 (691)
T ss_pred -------------------------------------Cccccc-------------------------------------
Confidence 001111
Q ss_pred ccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccc
Q 001213 802 SCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNA 881 (1122)
Q Consensus 802 sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~p 881 (1122)
..||..++++||+++|.+|+.+|||++|++. ...+++++|+|+.++++||.||++|++|++..
T Consensus 320 ------------~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~---- 382 (691)
T PRK05454 320 ------------RGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNLLDELKRDRRWCQGNLQHLRL---- 382 (691)
T ss_pred ------------cCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCHHHHHHHHHHHHhchHHHHHH----
Confidence 1267789999999999999999999999963 34567999999999999999999999998752
Q ss_pred cccCCCcchhhhhhhhhhhhhhhhHHHHHHH
Q 001213 882 LLASPKMKLLQRIAYLNVGIYPFTSIFLIVY 912 (1122)
Q Consensus 882 Ll~~~~Lsl~QRL~Yl~~~ly~l~sl~~liy 912 (1122)
+..+++++.+|++|++.++.++.+...+++
T Consensus 383 -l~~~gl~~~~R~~~l~g~~~yl~~P~wll~ 412 (691)
T PRK05454 383 -LLAKGLHPVSRLHFLTGIMSYLSAPLWLLF 412 (691)
T ss_pred -HHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236889999999998877666655443333
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.97 E-value=3.3e-30 Score=280.80 Aligned_cols=181 Identities=22% Similarity=0.313 Sum_probs=146.7
Q ss_pred CCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhh-ccCCCcEEEEccCccc
Q 001213 567 LPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMM-DRGGDRLCYVQFPQRF 645 (1122)
Q Consensus 567 lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~-D~~g~~vafVQfPQrF 645 (1122)
.++++|+.|++++| +||||||.+++.. -++++||+++|||+.+ .|++|++.+.+|. | +++|.||+||+|
T Consensus 66 ~~~v~~~~r~~~~g----~Kag~l~~~~~~~--~~~~~~i~~~DaD~~~-~p~~l~~~v~~~~~~---~~vg~vq~~~~~ 135 (254)
T cd04191 66 QGRIYYRRRRENTG----RKAGNIADFCRRW--GSRYDYMVVLDADSLM-SGDTIVRLVRRMEAN---PRAGIIQTAPKL 135 (254)
T ss_pred CCcEEEEEcCCCCC----ccHHHHHHHHHHh--CCCCCEEEEEeCCCCC-CHHHHHHHHHHHHhC---CCEEEEeCCcee
Confidence 34599999998655 7999999998742 2688999999999997 7999999999997 6 899999999999
Q ss_pred cCCCCcChhhh----hhhhhhhhhhhhhcccCC--ccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcC
Q 001213 646 EGIDPSDRYAN----HNTVFFDVNMRALDGVMG--PFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVT 719 (1122)
Q Consensus 646 ~nid~~D~y~n----~~~vFfdi~~~glDGlqg--p~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1122)
.|.+. .+.. ++..|..+.+.|++.++| .+|+||+.++||+||.... +
T Consensus 136 ~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~----------------~--------- 188 (254)
T cd04191 136 IGAET--LFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHC----------------A--------- 188 (254)
T ss_pred ECCCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhc----------------C---------
Confidence 98763 2222 356677778888887765 5789999999999996310 0
Q ss_pred CCchhhhhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhh
Q 001213 720 NTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAIS 799 (1122)
Q Consensus 720 ~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~ 799 (1122)
+.+++|
T Consensus 189 ---------------------------------------~~~i~g----------------------------------- 194 (254)
T cd04191 189 ---------------------------------------LPVLPG----------------------------------- 194 (254)
T ss_pred ---------------------------------------CccccC-----------------------------------
Confidence 012332
Q ss_pred hcccccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhh
Q 001213 800 VISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 873 (1122)
Q Consensus 800 v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQ 873 (1122)
-+||..++++||+++|++++.+||+++|.+. .....+++|+++.++++||.||++|++|
T Consensus 195 --------------~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~-~~~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 195 --------------RPPFGGHILSHDFVEAALMRRAGWEVRLAPD-LEGSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred --------------CCCCCCCeecHHHHHHHHHHHcCCEEEEccC-CcceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 1267789999999999999999999999963 3335799999999999999999999998
No 15
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=4.3e-28 Score=277.47 Aligned_cols=166 Identities=30% Similarity=0.427 Sum_probs=133.0
Q ss_pred CCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhh----
Q 001213 582 DHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANH---- 657 (1122)
Q Consensus 582 ~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~---- 657 (1122)
.++.|+||+|..+.. +.+++|+++|+|+++ .|++|++++..|.|+ +.+|.+|.||.+.+.++....+..
T Consensus 121 ~~~gK~~al~~~l~~----~~~d~V~~~DaD~~~-~~d~l~~~~~~f~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 193 (439)
T COG1215 121 KNGGKAGALNNGLKR----AKGDVVVILDADTVP-EPDALRELVSPFEDP--PVGAVVGTPRIRNRPDPSNLLGRIQAIE 193 (439)
T ss_pred cCccchHHHHHHHhh----cCCCEEEEEcCCCCC-ChhHHHHHHhhhcCC--CeeEEeCCceeeecCChhhhcchhcchh
Confidence 466899999988864 569999999999997 899999999999985 455899999999887641112211
Q ss_pred -hhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchh
Q 001213 658 -NTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDE 736 (1122)
Q Consensus 658 -~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1122)
...++-....+.++-.-.++.|++.+|||+||..
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~--------------------------------------------- 228 (439)
T COG1215 194 YLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEE--------------------------------------------- 228 (439)
T ss_pred hhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHH---------------------------------------------
Confidence 2222222222333335677899999999999942
Q ss_pred hhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccc
Q 001213 737 EMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIG 816 (1122)
Q Consensus 737 e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevG 816 (1122)
.| |
T Consensus 229 -------------------------~g----------------------------------------------------~ 231 (439)
T COG1215 229 -------------------------VG----------------------------------------------------G 231 (439)
T ss_pred -------------------------hC----------------------------------------------------C
Confidence 11 6
Q ss_pred cccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhh
Q 001213 817 WIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 878 (1122)
Q Consensus 817 w~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr 878 (1122)
|...++|||.+++++||.+|||++|++ ++.+.+++|+|+.++++||.||++|.+|++..+
T Consensus 232 ~~~~~i~ED~~lt~~l~~~G~~~~~~~--~~~~~~~~p~t~~~~~~Qr~RW~~g~~~~~~~~ 291 (439)
T COG1215 232 WLEDTITEDADLTLRLHLRGYRVVYVP--EAIVWTEAPETLKELWRQRLRWARGGLQVLLLH 291 (439)
T ss_pred CCCCceeccHHHHHHHHHCCCeEEEee--cceEeeeCcccHHHHHHHHHHHHcccceeeehh
Confidence 889999999999999999999999997 467889999999999999999999999999753
No 16
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=4.5e-26 Score=265.60 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=133.0
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhh----hhhhh
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYA----NHNTV 660 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~----n~~~v 660 (1122)
.||+|+|+.++. +++++|+++|+|+.+ +|+++++.+-.|.+ +++++.||..++..|.+ ..++ .+...
T Consensus 142 Gka~AlN~gl~~----a~~d~iv~lDAD~~~-~~d~L~~lv~~~~~--~~~~g~v~g~~~~~~~~--~~~~~~~~~e~~~ 212 (444)
T PRK14583 142 GKAIALRMGAAA----ARSEYLVCIDGDALL-DKNAVPYLVAPLIA--NPRTGAVTGNPRIRTRS--TLIGRVQVGEFSS 212 (444)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCc-CHHHHHHHHHHHHh--CCCeEEEEccceecCCC--cchhhHHHHHHHH
Confidence 499999998874 589999999999997 89999999998875 37999999988765532 2222 23445
Q ss_pred hhhhhhhhhcccCCccc-cccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhh
Q 001213 661 FFDVNMRALDGVMGPFY-VGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMN 739 (1122)
Q Consensus 661 Ffdi~~~glDGlqgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 739 (1122)
++....++.+-.+..+. .|++++|||+||..
T Consensus 213 ~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~------------------------------------------------ 244 (444)
T PRK14583 213 IIGLIKRTQRVYGQVFTVSGVVAAFRRRALAD------------------------------------------------ 244 (444)
T ss_pred HHHHHHHHHHHhCCceEecCceeEEEHHHHHH------------------------------------------------
Confidence 56666677666655554 48889999999841
Q ss_pred hcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccccccccccccccccc
Q 001213 740 LSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIY 819 (1122)
Q Consensus 740 ~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~ 819 (1122)
+| ||..
T Consensus 245 ----------------------vG----------------------------------------------------g~~~ 250 (444)
T PRK14583 245 ----------------------VG----------------------------------------------------YWSP 250 (444)
T ss_pred ----------------------cC----------------------------------------------------CCCC
Confidence 22 7888
Q ss_pred CCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhcccc
Q 001213 820 GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAL 882 (1122)
Q Consensus 820 gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pL 882 (1122)
+.++||++++++|+.+||++.|++ .+..++++|+|+.++++||.||++|.+|+++++...+
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p--~a~~~~~~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~ 311 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEP--RGLCWILMPETLRGLWKQRLRWAQGGAEVFLKNMFKL 311 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEee--ccEEeeeCCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 899999999999999999999996 4677899999999999999999999999998643333
No 17
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.94 E-value=5.1e-24 Score=245.02 Aligned_cols=173 Identities=23% Similarity=0.295 Sum_probs=130.3
Q ss_pred cEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCC
Q 001213 569 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGI 648 (1122)
Q Consensus 569 ~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~ni 648 (1122)
++.++.++++.| ||+|+|..++. ++++||+++|+|.++ +|++|.+.+..|.. +++++.||...+..|.
T Consensus 110 ~v~~i~~~~n~G-----ka~aln~g~~~----a~~d~i~~lDaD~~~-~~d~L~~l~~~~~~--~~~v~~v~g~~~~~~~ 177 (420)
T PRK11204 110 RLRVIHLAENQG-----KANALNTGAAA----ARSEYLVCIDGDALL-DPDAAAYMVEHFLH--NPRVGAVTGNPRIRNR 177 (420)
T ss_pred cEEEEEcCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCCC-ChhHHHHHHHHHHh--CCCeEEEECCceeccc
Confidence 356666555433 99999999974 589999999999997 89999999999963 2799999998877654
Q ss_pred CCcChhhh----hhhhhhhhhhhhhcccCCccc-cccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCch
Q 001213 649 DPSDRYAN----HNTVFFDVNMRALDGVMGPFY-VGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPE 723 (1122)
Q Consensus 649 d~~D~y~n----~~~vFfdi~~~glDGlqgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1122)
. ...+. +...++....++..-.+.... .|++++|||+++..
T Consensus 178 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~-------------------------------- 223 (420)
T PRK11204 178 S--TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHE-------------------------------- 223 (420)
T ss_pred h--hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHH--------------------------------
Confidence 2 12222 122222333333332333333 48888899988741
Q ss_pred hhhhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccc
Q 001213 724 ENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISC 803 (1122)
Q Consensus 724 ~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC 803 (1122)
+|
T Consensus 224 --------------------------------------vg---------------------------------------- 225 (420)
T PRK11204 224 --------------------------------------VG---------------------------------------- 225 (420)
T ss_pred --------------------------------------hC----------------------------------------
Confidence 22
Q ss_pred ccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhc
Q 001213 804 WYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 879 (1122)
Q Consensus 804 ~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~ 879 (1122)
||....++||++++++|+.+||++.|++ .+..+++.|+|+.++++||.||++|.+|.++.+.
T Consensus 226 ------------g~~~~~~~ED~~l~~rl~~~G~~i~~~p--~~~~~~~~p~t~~~~~~Qr~RW~~G~~~~l~~~~ 287 (420)
T PRK11204 226 ------------YWSTDMITEDIDISWKLQLRGWDIRYEP--RALCWILMPETLKGLWKQRLRWAQGGAEVLLKNF 287 (420)
T ss_pred ------------CCCCCcccchHHHHHHHHHcCCeEEecc--ccEEEeECcccHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6777889999999999999999999996 4667899999999999999999999999998643
No 18
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=99.94 E-value=9.6e-28 Score=213.52 Aligned_cols=63 Identities=35% Similarity=0.838 Sum_probs=35.1
Q ss_pred CCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 115 HPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 115 ~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
+|+++++++|+||| |||+||++++|++|||| ||+|||||+|||||+|||+|+|||||++|||+
T Consensus 1 pkp~k~~~~qiCqi--CGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 1 PKPLKNLNGQICQI--CGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS--S--SS-B-SS--S--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CcChhhcCCccccc--ccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 47899999999999 99999999999999999 99999999999999999999999999999986
No 19
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.93 E-value=1.9e-23 Score=243.57 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=82.3
Q ss_pred ccccCCccchHHHHHHHHh-CCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccccCCCcchhhhh
Q 001213 816 GWIYGSVTEDVVTGYRMHN-RGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKLLQRI 894 (1122)
Q Consensus 816 Gw~~gsVTEDi~TglrLh~-rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~~~Lsl~QRL 894 (1122)
||..++++||++++++++. .|+|..|++ .+.++.++|+|++++++||.||++|.+|++....++.. +.+.++.+++
T Consensus 232 gf~~~~i~ED~~l~~rl~~~~g~kv~~~~--~a~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~~~~~-~~~~~~~~~~ 308 (439)
T TIGR03111 232 LYNSETVGEDTDMTFQIRELLDGKVYLCE--NAIFYVDPIDGLNKLYTQRQRWQRGELEVSHMFFESAN-KSIKGFFSNF 308 (439)
T ss_pred CCCCCCcCccHHHHHHHHHhcCCeEEECC--CCEEEEECCcCHHHHHHHHHHHhccHHHHHHHHHhhhh-hchhhhhhHH
Confidence 7888899999999999975 689999986 46778899999999999999999999999975444333 3445666665
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhCCeee
Q 001213 895 AYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV 927 (1122)
Q Consensus 895 ~Yl~~~ly~l~sl~~liylllP~l~LltG~~iv 927 (1122)
.+..........++.+++.++++++.++|.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 309 MVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 543333344446677777788887776665433
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.92 E-value=6.3e-23 Score=242.52 Aligned_cols=196 Identities=22% Similarity=0.239 Sum_probs=137.2
Q ss_pred CCchhhhHHHHHhcc--ccCCC---CEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcCh----h
Q 001213 584 NKKAGAMNALVRASA--IMSNG---PFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDR----Y 654 (1122)
Q Consensus 584 h~KAGALNallRvSa--vltng---pfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~----y 654 (1122)
+.||+|||.+++... ....| ++|+++|||.++ +|++|+.... ++. +.++||.|+...+.+.+.. |
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v-~Pd~Lr~~~~-~~~----~~~~VQ~pv~~~~~~~~~~~ag~y 208 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVI-HPLELRLYNY-LLP----RHDFVQLPVFSLPRDWGEWVAGTY 208 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCc-CccHHHHHHh-hcC----CCCEEecceeccCCchhHHHHHHH
Confidence 479999999887431 01233 999999999997 8999986443 332 4468999988765443322 2
Q ss_pred hhhhhhhhhhhhhhhcccCCcc-ccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCC
Q 001213 655 ANHNTVFFDVNMRALDGVMGPF-YVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDS 733 (1122)
Q Consensus 655 ~n~~~vFfdi~~~glDGlqgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1122)
..+....+...++.++.+++++ ..|||++|||++|..+
T Consensus 209 ~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l----------------------------------------- 247 (504)
T PRK14716 209 MDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERL----------------------------------------- 247 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHH-----------------------------------------
Confidence 2233333445577888998886 5799999999999520
Q ss_pred chhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccccccccccc
Q 001213 734 DDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQ 813 (1122)
Q Consensus 734 ~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGk 813 (1122)
..+-||
T Consensus 248 -------------------------~~~~GG------------------------------------------------- 253 (504)
T PRK14716 248 -------------------------AAERGG------------------------------------------------- 253 (504)
T ss_pred -------------------------HhhcCC-------------------------------------------------
Confidence 001111
Q ss_pred ccccccCCccchHHHHHHHHhCCCeEEEeecCC-------------cceecccCCCHHHHHHHhhhhhcch-hhHHhhhc
Q 001213 814 RIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKR-------------DAFRGTAPINLTDRLHQVLRWATGS-VEIFFSRN 879 (1122)
Q Consensus 814 evGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~-------------~af~GlAP~tL~~~l~QR~RWA~G~-lQI~~sr~ 879 (1122)
++|..+++|||+++|++|+.+|||++|++... .+.++++|+|+.++++||.||++|. +|.....-
T Consensus 254 -~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~g 332 (504)
T PRK14716 254 -QPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAFQGWERLG 332 (504)
T ss_pred -CCCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhchHHhhHHhcC
Confidence 03889999999999999999999999986310 1345889999999999999999995 78875321
Q ss_pred -cccccCCCcchhhhhhhhhhhh
Q 001213 880 -NALLASPKMKLLQRIAYLNVGI 901 (1122)
Q Consensus 880 -~pLl~~~~Lsl~QRL~Yl~~~l 901 (1122)
+.-+..+.+.|++|...+...+
T Consensus 333 w~~~~~~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 333 WKGPAATKYMLWRDRKGLLTNLL 355 (504)
T ss_pred CCCchhhhhhHHHHHHHHHHHHH
Confidence 1111134577788887765443
No 21
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.89 E-value=1.8e-21 Score=238.38 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=126.3
Q ss_pred CCchhhhHHHHHhcccc---CCC--CEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcCh----h
Q 001213 584 NKKAGAMNALVRASAIM---SNG--PFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDR----Y 654 (1122)
Q Consensus 584 h~KAGALNallRvSavl---tng--pfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~----y 654 (1122)
+.||+|||.++....-. +.+ +.++++|||.++ +|++|+ .+-+|.+ ++ ++||.|..-.+...+.. |
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v-~pd~L~-~~~~l~~---~~-~~VQ~p~~p~~~~~~~~~~~~~ 205 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVI-SPMELR-LFNYLVE---RK-DLIQIPVYPFEREWTHFTSGTY 205 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCC-ChhHHH-HHHhhcC---CC-CeEeecccCCCccHHHHHHHHH
Confidence 47999999988753111 133 468889999997 899998 6788887 44 89999976333222222 3
Q ss_pred hhhhhhhhhhhhhhhcccCCccc-cccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCC
Q 001213 655 ANHNTVFFDVNMRALDGVMGPFY-VGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDS 733 (1122)
Q Consensus 655 ~n~~~vFfdi~~~glDGlqgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1122)
..+....+...+++++.++|++. .|||++|+|++|.-
T Consensus 206 ~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~a------------------------------------------ 243 (727)
T PRK11234 206 IDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTA------------------------------------------ 243 (727)
T ss_pred HHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHH------------------------------------------
Confidence 34444455677899999988865 69999995554310
Q ss_pred chhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccccccccccc
Q 001213 734 DDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQ 813 (1122)
Q Consensus 734 ~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGk 813 (1122)
+.+.||
T Consensus 244 -------------------------l~~~gg------------------------------------------------- 249 (727)
T PRK11234 244 -------------------------LLEDGD------------------------------------------------- 249 (727)
T ss_pred -------------------------HHHhcC-------------------------------------------------
Confidence 112332
Q ss_pred ccccccCCccchHHHHHHHHhCCCeEEEeecC---------------------CcceecccCCCHHHHHHHhhhhhcc-h
Q 001213 814 RIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTK---------------------RDAFRGTAPINLTDRLHQVLRWATG-S 871 (1122)
Q Consensus 814 evGw~~gsVTEDi~TglrLh~rGWrSvY~~p~---------------------~~af~GlAP~tL~~~l~QR~RWA~G-~ 871 (1122)
..+|..+++|||+++|++|+.+||+++|++.. ..+++++.|+|+.+.++||.||.+| .
T Consensus 250 g~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~ 329 (727)
T PRK11234 250 GIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGIV 329 (727)
T ss_pred CCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHcccH
Confidence 12799999999999999999999999999711 1347788899999999999999999 6
Q ss_pred hhHHhh
Q 001213 872 VEIFFS 877 (1122)
Q Consensus 872 lQI~~s 877 (1122)
+|.+..
T Consensus 330 ~q~~~~ 335 (727)
T PRK11234 330 FQGFKT 335 (727)
T ss_pred HHHHHH
Confidence 888753
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.89 E-value=7.6e-22 Score=205.84 Aligned_cols=171 Identities=35% Similarity=0.571 Sum_probs=137.5
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
++|+.+++.. ..|+||+|++++. .+++||+.+|+|.++ +|++|.+.+..|.+ +++++.||.++.+.+.+
T Consensus 60 ~~~~~~~~~~----~~~~~~~n~~~~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~ 128 (234)
T cd06421 60 YRYLTRPDNR----HAKAGNLNNALAH----TTGDFVAILDADHVP-TPDFLRRTLGYFLD--DPKVALVQTPQFFYNPD 128 (234)
T ss_pred ceEEEeCCCC----CCcHHHHHHHHHh----CCCCEEEEEccccCc-CccHHHHHHHHHhc--CCCeEEEecceEEecCC
Confidence 3455555433 3699999999984 489999999999998 79999999999986 47999999999998776
Q ss_pred CcC----hhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhh
Q 001213 650 PSD----RYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEEN 725 (1122)
Q Consensus 650 ~~D----~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1122)
..+ .+......|+.....+........+.|++.+|||+++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~---------------------------------- 174 (234)
T cd06421 129 PFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDE---------------------------------- 174 (234)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHH----------------------------------
Confidence 542 344455666666666766666778889999999999842
Q ss_pred hhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccc
Q 001213 726 RALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWY 805 (1122)
Q Consensus 726 ~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~Y 805 (1122)
+|
T Consensus 175 ------------------------------------ig------------------------------------------ 176 (234)
T cd06421 175 ------------------------------------IG------------------------------------------ 176 (234)
T ss_pred ------------------------------------hC------------------------------------------
Confidence 12
Q ss_pred ccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHH
Q 001213 806 EDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 875 (1122)
Q Consensus 806 E~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~ 875 (1122)
||....+.||++++++++.+||+++|++. +...+..|.++..+++|+.||.+|++|++
T Consensus 177 ----------~~~~~~~~eD~~l~~r~~~~g~~i~~~~~--~~~~~~~~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 177 ----------GFPTDSVTEDLATSLRLHAKGWRSVYVPE--PLAAGLAPETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred ----------CCCccceeccHHHHHHHHHcCceEEEecC--ccccccCCccHHHHHHHHHHHhcCCeeeC
Confidence 34445577999999999999999999973 56789999999999999999999999863
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.88 E-value=1.6e-21 Score=205.66 Aligned_cols=167 Identities=25% Similarity=0.366 Sum_probs=127.3
Q ss_pred cEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCC
Q 001213 569 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGI 648 (1122)
Q Consensus 569 ~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~ni 648 (1122)
+++++.+.+++| +||+|+|+.++. +.++||+++|+|.++ +|++|++...++.| +++++||....+.+.
T Consensus 62 ~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~~-~~~~l~~~~~~~~~---~~v~~v~~~~~~~~~ 129 (232)
T cd06437 62 NIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFVP-PPDFLQKTPPYFAD---PKLGFVQTRWGHINA 129 (232)
T ss_pred ceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCCC-ChHHHHHhhhhhcC---CCeEEEecceeeEcC
Confidence 367777777666 499999999984 589999999999997 79999997776666 789999998776654
Q ss_pred CCcC--hh-hhhhhhhhhhhhhhhcccCCcc-ccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchh
Q 001213 649 DPSD--RY-ANHNTVFFDVNMRALDGVMGPF-YVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEE 724 (1122)
Q Consensus 649 d~~D--~y-~n~~~vFfdi~~~glDGlqgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1122)
+.+- ++ .-....++.....+.......+ ..|++++|||+++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~--------------------------------- 176 (232)
T cd06437 130 NYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIED--------------------------------- 176 (232)
T ss_pred CCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHH---------------------------------
Confidence 4321 11 1112224555555554444433 479999999998841
Q ss_pred hhhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccc
Q 001213 725 NRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCW 804 (1122)
Q Consensus 725 ~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~ 804 (1122)
+|
T Consensus 177 -------------------------------------vg----------------------------------------- 178 (232)
T cd06437 177 -------------------------------------AG----------------------------------------- 178 (232)
T ss_pred -------------------------------------hC-----------------------------------------
Confidence 22
Q ss_pred cccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcch
Q 001213 805 YEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 871 (1122)
Q Consensus 805 YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~ 871 (1122)
||......||+++++||+.+||+.+|++ .+.++...|+|+.++++||+||++|.
T Consensus 179 -----------g~~~~~~~ED~~l~~rl~~~G~~~~~~~--~~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 179 -----------GWNHDTLTEDLDLSYRAQLKGWKFVYLD--DVVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred -----------CCCCCcchhhHHHHHHHHHCCCeEEEec--cceeeeeCCcCHHHHHHHHHHhccCC
Confidence 5666678899999999999999999996 46778999999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.86 E-value=1.6e-20 Score=200.01 Aligned_cols=163 Identities=22% Similarity=0.315 Sum_probs=128.9
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcC---hhhhhhhhh
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSD---RYANHNTVF 661 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D---~y~n~~~vF 661 (1122)
.|++|+|++++ .++|+||+.+|+|..+ .|++|.+++.+|.+ ..+++++||.+..+++...+- .+......+
T Consensus 71 G~~~a~n~g~~----~a~gd~i~~~DaD~~~-~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (241)
T cd06427 71 TKPKACNYALA----FARGEYVVIYDAEDAP-DPDQLKKAVAAFAR-LDDKLACVQAPLNYYNARENWLTRMFALEYAAW 144 (241)
T ss_pred chHHHHHHHHH----hcCCCEEEEEcCCCCC-ChHHHHHHHHHHHh-cCCCEEEEeCceEeeCCCccHHHHHHHHHHHHH
Confidence 59999999997 3689999999999997 79999999999974 237999999998887654221 112223344
Q ss_pred hhhhhhhhcccCCccc-cccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhh
Q 001213 662 FDVNMRALDGVMGPFY-VGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNL 740 (1122)
Q Consensus 662 fdi~~~glDGlqgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 740 (1122)
|+..+++...++.+.. .|+++++||+++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~------------------------------------------------- 175 (241)
T cd06427 145 FDYLLPGLARLGLPIPLGGTSNHFRTDVLRE------------------------------------------------- 175 (241)
T ss_pred HHHHHHHHHhcCCeeecCCchHHhhHHHHHH-------------------------------------------------
Confidence 5666777776666654 58888999999842
Q ss_pred cccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccC
Q 001213 741 SLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYG 820 (1122)
Q Consensus 741 ~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~g 820 (1122)
+| ||...
T Consensus 176 ---------------------vg----------------------------------------------------g~~~~ 182 (241)
T cd06427 176 ---------------------LG----------------------------------------------------GWDPF 182 (241)
T ss_pred ---------------------cC----------------------------------------------------CCCcc
Confidence 22 55555
Q ss_pred CccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhh
Q 001213 821 SVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 878 (1122)
Q Consensus 821 sVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr 878 (1122)
..+||+++++|++.+||+.+|++. ......|+|+.++++||.||++|.+|++..+
T Consensus 183 ~~~eD~~l~~rl~~~G~r~~~~~~---~~~~~~~~~~~~~~~q~~Rw~~g~~~~~~~~ 237 (241)
T cd06427 183 NVTEDADLGLRLARAGYRTGVLNS---TTLEEANNALGNWIRQRSRWIKGYMQTWLVH 237 (241)
T ss_pred cchhhHHHHHHHHHCCceEEEecc---cccccCcHhHHHHHHHHHHHhccHHHHHHHH
Confidence 678999999999999999999952 3468999999999999999999999999753
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.85 E-value=9.4e-20 Score=191.78 Aligned_cols=173 Identities=30% Similarity=0.451 Sum_probs=128.1
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.++..++.+| .||||+|.+++.+. .+++||+.+|+|-.+ .|++|.+.+.+|.+ ++++.||.++.+.+..
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~~~~~~~~~~ 127 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQV-EPDWLKRLVPIFDD---PRVGFVQAPQDYRDGE 127 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCCc-CHHHHHHHHHHhcC---CCeeEEecCccccCCC
Confidence 44555555455 49999999998532 468999999999886 79999999999865 7999999987665432
Q ss_pred CcChhh----hhhhhhhhhhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhh
Q 001213 650 PSDRYA----NHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEEN 725 (1122)
Q Consensus 650 ~~D~y~----n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1122)
. ..+. -....+|...+......+.....|+++++||+++..
T Consensus 128 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~---------------------------------- 172 (236)
T cd06435 128 E-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDD---------------------------------- 172 (236)
T ss_pred c-cHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHH----------------------------------
Confidence 1 1221 111222333333334444455678888899998741
Q ss_pred hhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccc
Q 001213 726 RALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWY 805 (1122)
Q Consensus 726 ~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~Y 805 (1122)
+|
T Consensus 173 ------------------------------------iG------------------------------------------ 174 (236)
T cd06435 173 ------------------------------------VG------------------------------------------ 174 (236)
T ss_pred ------------------------------------hC------------------------------------------
Confidence 22
Q ss_pred ccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhh
Q 001213 806 EDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFS 877 (1122)
Q Consensus 806 E~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~s 877 (1122)
||......||++++++++.+||+..|++. .......|+++.++++||.||++|++|++..
T Consensus 175 ----------gf~~~~~~eD~dl~~r~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 175 ----------GWDEWCITEDSELGLRMHEAGYIGVYVAQ--SYGHGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred ----------CCCCccccchHHHHHHHHHCCcEEEEcch--hhccCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 55556678999999999999999999963 4557899999999999999999999999864
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.82 E-value=8.6e-21 Score=198.27 Aligned_cols=165 Identities=27% Similarity=0.379 Sum_probs=104.7
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.++.+.+++| ...|++|+|.+++. ..+++|+.+|+|.++ +|++|++++-+|.+ ++++.||.+..+++ +
T Consensus 60 v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~~-~p~~l~~~~~~~~~---~~~~~v~~~~~~~~-~ 128 (228)
T PF13641_consen 60 VRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTVL-DPDWLERLLAAFAD---PGVGAVGGPVFPDN-D 128 (228)
T ss_dssp EEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEEE--CHHHHHHHHHHHB---SS--EEEEEEEETT-C
T ss_pred eEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcEE-CHHHHHHHHHHHHh---CCCCeEeeeEeecC-C
Confidence 55666554333 23699999999985 459999999999998 89999999999966 79999998886664 2
Q ss_pred CcChhhhhhhhhhh----hhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhh
Q 001213 650 PSDRYANHNTVFFD----VNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEEN 725 (1122)
Q Consensus 650 ~~D~y~n~~~vFfd----i~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1122)
. ..+......++. ....+...++.+.+.|++++|||+++..
T Consensus 129 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~---------------------------------- 173 (228)
T PF13641_consen 129 R-NWLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEE---------------------------------- 173 (228)
T ss_dssp C-CEEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHH----------------------------------
T ss_pred C-CHHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHH----------------------------------
Confidence 2 222222222221 1234445555566789999999999841
Q ss_pred hhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccc
Q 001213 726 RALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWY 805 (1122)
Q Consensus 726 ~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~Y 805 (1122)
+|
T Consensus 174 ------------------------------------~g------------------------------------------ 175 (228)
T PF13641_consen 174 ------------------------------------VG------------------------------------------ 175 (228)
T ss_dssp ------------------------------------H-------------------------------------------
T ss_pred ------------------------------------hC------------------------------------------
Confidence 22
Q ss_pred ccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcc
Q 001213 806 EDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATG 870 (1122)
Q Consensus 806 E~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G 870 (1122)
||......||++++++++.+||+++|++ .+..+...|.++.++++||.||+.|
T Consensus 176 ----------~fd~~~~~eD~~l~~r~~~~G~~~~~~~--~~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 176 ----------GFDPFILGEDFDLCLRLRAAGWRIVYAP--DALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ----------S--SSSSSHHHHHHHHHHHTT--EEEEE--EEEEEE--SSSTHHHHHHHHHHH--
T ss_pred ----------CCCCCCcccHHHHHHHHHHCCCcEEEEC--CcEEEEeCCCCHHHHHHHHhccCcC
Confidence 5666778899999999999999999997 4667899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.80 E-value=2.1e-17 Score=201.18 Aligned_cols=170 Identities=19% Similarity=0.270 Sum_probs=128.1
Q ss_pred CchhhhHHHHHhc---cccCCCCE--EEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCcc-ccCCCCc---Chhh
Q 001213 585 KKAGAMNALVRAS---AIMSNGPF--ILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQR-FEGIDPS---DRYA 655 (1122)
Q Consensus 585 ~KAGALNallRvS---avltngpf--IlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQr-F~nid~~---D~y~ 655 (1122)
.||.|||.++... .-.+.+.| |+++|||-++ +|++|+. |-|++++ + -+||.|-. ..|...+ -.|+
T Consensus 141 gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~-~P~~L~~-~~~~~~~--~--~~iQ~pV~~~~~~~~~~l~~~~~ 214 (703)
T PRK15489 141 CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVL-HPLELKY-FNYLLPR--K--DLVQLPVLSLERKWYEWVAGTYM 214 (703)
T ss_pred CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCC-ChhHHHH-HHhhcCC--c--ceeeeeeccCCCccccHHHHHHH
Confidence 5999999877642 11234555 9999999997 8999975 5777763 3 46998732 1111111 2377
Q ss_pred hhhhhhhhhhhhhhcccCCccc-cccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCc
Q 001213 656 NHNTVFFDVNMRALDGVMGPFY-VGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSD 734 (1122)
Q Consensus 656 n~~~vFfdi~~~glDGlqgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1122)
.+....|+..|+++..++|++. .|||++|||+||..
T Consensus 215 ~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~------------------------------------------- 251 (703)
T PRK15489 215 DEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA------------------------------------------- 251 (703)
T ss_pred HHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH-------------------------------------------
Confidence 8888899999999999999987 58999999999852
Q ss_pred hhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccc
Q 001213 735 DEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQR 814 (1122)
Q Consensus 735 ~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGke 814 (1122)
+.+.|| |
T Consensus 252 ------------------------l~~~gg----------------------------------------------~--- 258 (703)
T PRK15489 252 ------------------------LMKERG----------------------------------------------N--- 258 (703)
T ss_pred ------------------------HHHhcC----------------------------------------------C---
Confidence 111221 0
Q ss_pred cccccCCccchHHHHHHHHhCCCeEEEeec---------------------CCcceecccCCCHHHHHHHhhhhhcchh-
Q 001213 815 IGWIYGSVTEDVVTGYRMHNRGWKSVYCVT---------------------KRDAFRGTAPINLTDRLHQVLRWATGSV- 872 (1122)
Q Consensus 815 vGw~~gsVTEDi~TglrLh~rGWrSvY~~p---------------------~~~af~GlAP~tL~~~l~QR~RWA~G~l- 872 (1122)
.+|..+|+|||+++|+||+.+|||+.|+-- ...+.+...|.|+.+.++||.||-.|-.
T Consensus 259 ~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~Gi~~ 338 (703)
T PRK15489 259 QPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVLGIAF 338 (703)
T ss_pred CCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHhHHHH
Confidence 168889999999999999999999999321 1356778899999999999999999987
Q ss_pred hHHh
Q 001213 873 EIFF 876 (1122)
Q Consensus 873 QI~~ 876 (1122)
|-..
T Consensus 339 q~~~ 342 (703)
T PRK15489 339 QGWE 342 (703)
T ss_pred hhHH
Confidence 6643
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.75 E-value=7.2e-18 Score=181.45 Aligned_cols=166 Identities=16% Similarity=0.067 Sum_probs=109.5
Q ss_pred cCCCCEEEEecCCCCCCChHHHHHHHHHhh-ccCCCcEEEEccCccccCCCCcChhhhhh---hhhhhhhhhhhcccCCc
Q 001213 600 MSNGPFILNLDCDHYIYNSQALREGMCFMM-DRGGDRLCYVQFPQRFEGIDPSDRYANHN---TVFFDVNMRALDGVMGP 675 (1122)
Q Consensus 600 ltngpfIlnlDcD~y~nnp~~Lr~amcff~-D~~g~~vafVQfPQrF~nid~~D~y~n~~---~vFfdi~~~glDGlqgp 675 (1122)
.++++||+.+|+|.++ +|++|++.+-+|. | ++++-||..++..|...+-.-.-++ ...+-....+...++..
T Consensus 71 ~a~~e~i~~~DaD~~~-~~~~l~~l~~~~~~~---p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~ 146 (244)
T cd04190 71 PDDPEFILLVDADTKF-DPDSIVQLYKAMDKD---PEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFV 146 (244)
T ss_pred cCCCCEEEEECCCCcC-CHhHHHHHHHHHHhC---CCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCce
Confidence 4689999999999998 8999999999985 5 7999999988877653221111111 11111111222333333
Q ss_pred -cccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccCccccCcchhh
Q 001213 676 -FYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLV 754 (1122)
Q Consensus 676 -~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi 754 (1122)
...|++.+|||+||....... . +++
T Consensus 147 ~~~~G~~~~~R~~~l~~~~~~~------~----~~~-------------------------------------------- 172 (244)
T cd04190 147 TCLPGCFSMYRIEALKGDNGGK------G----PLL-------------------------------------------- 172 (244)
T ss_pred EECCCceEEEEehhhcCCcccc------c----cch--------------------------------------------
Confidence 345999999999997521000 0 000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHh
Q 001213 755 DSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHN 834 (1122)
Q Consensus 755 ~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~ 834 (1122)
+. +|..+|-. ...+....+++||++++++|..
T Consensus 173 ------~~-----------------------------------------~~~~~~~~-~~~~~~~~~~~ED~~l~~~l~~ 204 (244)
T cd04190 173 ------DY-----------------------------------------AYLTNTVD-SLHKKNNLDLGEDRILCTLLLK 204 (244)
T ss_pred ------hh-----------------------------------------ccccCccc-chHHHHHHhHhcccceeHHHhc
Confidence 00 00000000 0013345679999999999999
Q ss_pred CCCeEEE--eecCCcceecccCCCHHHHHHHhhhhhcchhh
Q 001213 835 RGWKSVY--CVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 873 (1122)
Q Consensus 835 rGWrSvY--~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQ 873 (1122)
+||++.| ++ .+.++.++|+|+.++++||+||++|++.
T Consensus 205 ~G~~~~~~~~~--~a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 205 AGPKRKYLYVP--GAVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred cCCccEEEEec--ccEEEEECCCCHHHHHHHhHhhhccccc
Confidence 9999999 65 5677899999999999999999999863
No 29
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.74 E-value=4e-16 Score=178.50 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=113.7
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.++.+.++.| .+.|++|+|.+++ .+.+++|+.+|+|..+ .|++|++.+..|.| ++++.|+.+.+.. +
T Consensus 100 i~~v~~~~~~G--~~~K~~~l~~~~~----~a~ge~i~~~DaD~~~-~p~~L~~lv~~~~~---~~v~~V~~~~~~~--~ 167 (373)
T TIGR03472 100 IDLVIDARRHG--PNRKVSNLINMLP----HARHDILVIADSDISV-GPDYLRQVVAPLAD---PDVGLVTCLYRGR--P 167 (373)
T ss_pred eEEEECCCCCC--CChHHHHHHHHHH----hccCCEEEEECCCCCc-ChhHHHHHHHHhcC---CCcceEeccccCC--C
Confidence 44443333333 4579999988776 3589999999999997 79999999999977 7899999865432 2
Q ss_pred CcChhhhhh------hhhhhhhhhhhcccCCc-cccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCc
Q 001213 650 PSDRYANHN------TVFFDVNMRALDGVMGP-FYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTP 722 (1122)
Q Consensus 650 ~~D~y~n~~------~vFfdi~~~glDGlqgp-~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1122)
... +.++. ..|+...+.. +-++.+ +..|++.+|||++|..
T Consensus 168 ~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~a~RR~~l~~------------------------------- 214 (373)
T TIGR03472 168 VPG-FWSRLGAMGINHNFLPSVMVA-RALGRARFCFGATMALRRATLEA------------------------------- 214 (373)
T ss_pred CCC-HHHHHHHHHhhhhhhHHHHHH-HhccCCccccChhhheeHHHHHH-------------------------------
Confidence 222 22211 1121111111 112222 3568888899999852
Q ss_pred hhhhhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcc
Q 001213 723 EENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVIS 802 (1122)
Q Consensus 723 ~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~s 802 (1122)
+|
T Consensus 215 ---------------------------------------iG--------------------------------------- 216 (373)
T TIGR03472 215 ---------------------------------------IG--------------------------------------- 216 (373)
T ss_pred ---------------------------------------cC---------------------------------------
Confidence 22
Q ss_pred cccccccccccccccc--cCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcch
Q 001213 803 CWYEDKTEWGQRIGWI--YGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 871 (1122)
Q Consensus 803 C~YE~~T~WGkevGw~--~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~ 871 (1122)
||. ..+++||++++.+++.+||++.|++ ........|+|+.++++||.||++..
T Consensus 217 -------------Gf~~~~~~~~ED~~l~~~i~~~G~~v~~~~--~~v~~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 217 -------------GLAALAHHLADDYWLGELVRALGLRVVLAP--VVVDTDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred -------------ChHHhcccchHHHHHHHHHHHcCCeEEecc--hhhhcCCCccCHHHHHHHHHHHHhhh
Confidence 333 2457899999999999999999985 34556788899999999999998544
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.71 E-value=3.5e-16 Score=162.14 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=113.9
Q ss_pred CCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCc-Chhhhhhhhhh
Q 001213 584 NKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPS-DRYANHNTVFF 662 (1122)
Q Consensus 584 h~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~-D~y~n~~~vFf 662 (1122)
..|+.|+|.++.. +.++||+.+|+|.++ .|++|.+.+.+|.+ +..+.|+.++.+...+.. ..+..-...+.
T Consensus 68 ~g~~~a~n~g~~~----~~~d~i~~~D~D~~~-~~~~l~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd04192 68 SGKKNALTTAIKA----AKGDWIVTTDADCVV-PSNWLLTFVAFIQK---EQIGLVAGPVIYFKGKSLLAKFQRLDWLSL 139 (229)
T ss_pred chhHHHHHHHHHH----hcCCEEEEECCCccc-CHHHHHHHHHHhhc---CCCcEEeeeeeecCCccHHHHHHHHHHHHH
Confidence 4689999988863 579999999999997 79999999998876 567888888887622111 11111111122
Q ss_pred hhhhhhhcccCCcc-ccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhc
Q 001213 663 DVNMRALDGVMGPF-YVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLS 741 (1122)
Q Consensus 663 di~~~glDGlqgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 741 (1122)
.....+.-+++.+. ..|++.+|||+++.-
T Consensus 140 ~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~-------------------------------------------------- 169 (229)
T cd04192 140 LGLIAGSFGLGKPFMCNGANMAYRKEAFFE-------------------------------------------------- 169 (229)
T ss_pred HHHHhhHHHhcCccccccceEEEEHHHHHH--------------------------------------------------
Confidence 22233344455553 357778899998742
Q ss_pred ccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccc--c
Q 001213 742 LFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWI--Y 819 (1122)
Q Consensus 742 ~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~--~ 819 (1122)
+| ||. .
T Consensus 170 --------------------~g----------------------------------------------------gf~~~~ 177 (229)
T cd04192 170 --------------------VG----------------------------------------------------GFEGND 177 (229)
T ss_pred --------------------hc----------------------------------------------------CCcccc
Confidence 22 343 2
Q ss_pred CCccchHHHHHHHHhCCC-eEEEeecCCcceecccCCCHHHHHHHhhhhhcc
Q 001213 820 GSVTEDVVTGYRMHNRGW-KSVYCVTKRDAFRGTAPINLTDRLHQVLRWATG 870 (1122)
Q Consensus 820 gsVTEDi~TglrLh~rGW-rSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G 870 (1122)
...+||.++.++++.+|| ++.|+...........|.++.++++||+||++|
T Consensus 178 ~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 178 HIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 457899999999999999 999986445667899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.67 E-value=1.3e-15 Score=157.53 Aligned_cols=122 Identities=19% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhhhhhhhh
Q 001213 584 NKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFD 663 (1122)
Q Consensus 584 h~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~~~vFfd 663 (1122)
..|++|||++++. .+++|++.+|+|..+ .|++|.+.+..|.+ ++++.|+..
T Consensus 72 ~~~~~~~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~l~~~~~~---~~~~~v~~~--------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEE----ARYDILVISDSDISV-PPDYLRRMVAPLMD---PGVGLVTCL--------------------- 122 (196)
T ss_pred CHhHHHHHHHHHh----CCCCEEEEECCCceE-ChhHHHHHHHHhhC---CCCCeEEee---------------------
Confidence 3689999999973 579999999999987 79999999999877 578888764
Q ss_pred hhhhhhcccCCccccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhccc
Q 001213 664 VNMRALDGVMGPFYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLF 743 (1122)
Q Consensus 664 i~~~glDGlqgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 743 (1122)
...|+++++||+++..
T Consensus 123 ------------~~~g~~~~~r~~~~~~---------------------------------------------------- 138 (196)
T cd02520 123 ------------CAFGKSMALRREVLDA---------------------------------------------------- 138 (196)
T ss_pred ------------cccCceeeeEHHHHHh----------------------------------------------------
Confidence 5668999999999842
Q ss_pred CccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccccccccccccccccc--CC
Q 001213 744 PKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIY--GS 821 (1122)
Q Consensus 744 ~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~--gs 821 (1122)
+| ||.. ..
T Consensus 139 ------------------~g----------------------------------------------------gf~~~~~~ 148 (196)
T cd02520 139 ------------------IG----------------------------------------------------GFEAFADY 148 (196)
T ss_pred ------------------cc----------------------------------------------------ChHHHhHH
Confidence 12 2321 24
Q ss_pred ccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcc
Q 001213 822 VTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATG 870 (1122)
Q Consensus 822 VTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G 870 (1122)
+.||++.++++..+||++.|++ .+......|.++.++++||.||++.
T Consensus 149 ~~eD~~l~~rl~~~G~~i~~~~--~~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 149 LAEDYFLGKLIWRLGYRVVLSP--YVVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred HHHHHHHHHHHHHcCCeEEEcc--hheeccCCcccHHHHHHHHHHHhcc
Confidence 6799999999999999999996 3567789999999999999999863
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.66 E-value=2.9e-15 Score=157.13 Aligned_cols=166 Identities=20% Similarity=0.166 Sum_probs=114.1
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhhhhhhhh-
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFD- 663 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~~~vFfd- 663 (1122)
.|++|+|..++. +.+++|+.+|+|.++ .|++|++++..|.| ++++.|+..+.+.+.+. ..+......++.
T Consensus 64 g~~~a~n~g~~~----a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~---~~v~~v~~~~~~~~~~~-~~~~~~~~~~~~~ 134 (235)
T cd06434 64 GKRRALAEGIRH----VTTDIVVLLDSDTVW-PPNALPEMLKPFED---PKVGGVGTNQRILRPRD-SKWSFLAAEYLER 134 (235)
T ss_pred ChHHHHHHHHHH----hCCCEEEEECCCcee-ChhHHHHHHHhccC---CCEeEEcCceEeecCcc-cHHHHHHHHHHHH
Confidence 499999998874 489999999999997 79999999999986 79999999998877642 222111111111
Q ss_pred ---hhhhhhcccCCc-cccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhh
Q 001213 664 ---VNMRALDGVMGP-FYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMN 739 (1122)
Q Consensus 664 ---i~~~glDGlqgp-~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 739 (1122)
...+.....++. ...|...++||++|..... ++ +
T Consensus 135 ~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~---------------------------------------~~-~-- 172 (235)
T cd06434 135 RNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLF---------------------------------------LE-E-- 172 (235)
T ss_pred HHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhh---------------------------------------HH-H--
Confidence 111222222222 2346667899999853100 00 0
Q ss_pred hcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccccccccccccccccccc
Q 001213 740 LSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIY 819 (1122)
Q Consensus 740 ~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~ 819 (1122)
|. .+.. +...
T Consensus 173 -------------~~-----~~~~----------------------------------------------------~~~~ 182 (235)
T cd06434 173 -------------FT-----NETF----------------------------------------------------MGRR 182 (235)
T ss_pred -------------hh-----hhhh----------------------------------------------------cCCC
Confidence 00 0000 1112
Q ss_pred CCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhh
Q 001213 820 GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 873 (1122)
Q Consensus 820 gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQ 873 (1122)
....||.+++.+++.+||+.+|++. +..+...|.++.++++||.||++|..+
T Consensus 183 ~~~~eD~~l~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~q~~Rw~~~~~~ 234 (235)
T cd06434 183 LNAGDDRFLTRYVLSHGYKTVYQYT--SEAYTETPENYKKFLKQQLRWSRSNWR 234 (235)
T ss_pred CCcCchHHHHHHHHHCCCeEEEecC--CeEEEEcchhHHHHHHHhhhhhhcccC
Confidence 3577999999999999999999963 455678999999999999999999853
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.65 E-value=9.7e-15 Score=155.24 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=46.5
Q ss_pred CccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhh
Q 001213 821 SVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 873 (1122)
Q Consensus 821 sVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQ 873 (1122)
...||++++.++..+||+++|++ .+......|.+..++++|+.||+.|++|
T Consensus 200 ~~~eD~~l~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~g~~~ 250 (251)
T cd06439 200 TINDDFVLPLRIARQGYRVVYEP--DAVAYEEVAEDGSEEFRRRVRIAAGNLQ 250 (251)
T ss_pred cchhHHHHHHHHHHcCCeEEecc--ccEEEEeCcccHHHHHHHHHHHHhcccc
Confidence 35699999999999999999986 4567899999999999999999999987
No 34
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.64 E-value=3.5e-15 Score=153.33 Aligned_cols=137 Identities=26% Similarity=0.399 Sum_probs=111.1
Q ss_pred EEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhhhhhhhhhh----hhhhcccCCc-cccc
Q 001213 605 FILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVN----MRALDGVMGP-FYVG 679 (1122)
Q Consensus 605 fIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~~~vFfdi~----~~glDGlqgp-~yvG 679 (1122)
+|+++|+|..+ .+++|++...+|.| ++++.||+|+.+++ .++...+.+..+|... ....+..+.+ ...|
T Consensus 1 ~v~~~DaDt~~-~~d~l~~~~~~~~~---~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 74 (193)
T PF13632_consen 1 YVLFLDADTRL-PPDFLERLVAALED---PKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSG 74 (193)
T ss_pred CEEEEcCCCCC-ChHHHHHHHHHHhC---CCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCccccC
Confidence 58999999997 79999999999986 79999999999973 3455666666666422 2233445454 3579
Q ss_pred cccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccCccccCcchhhccchh
Q 001213 680 TGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPV 759 (1122)
Q Consensus 680 TGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~ 759 (1122)
+|.++||+||..
T Consensus 75 ~~~~~r~~~l~~-------------------------------------------------------------------- 86 (193)
T PF13632_consen 75 SGMLFRREALRE-------------------------------------------------------------------- 86 (193)
T ss_pred cceeeeHHHHHH--------------------------------------------------------------------
Confidence 999999999852
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccc-cCCccchHHHHHHHHhCCCe
Q 001213 760 AEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWI-YGSVTEDVVTGYRMHNRGWK 838 (1122)
Q Consensus 760 ~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~-~gsVTEDi~TglrLh~rGWr 838 (1122)
+| ||. ..+++||+++++++..+||+
T Consensus 87 --vg----------------------------------------------------~~~~~~~~~ED~~l~~~l~~~G~~ 112 (193)
T PF13632_consen 87 --VG----------------------------------------------------GFDDPFSIGEDMDLGFRLRRAGYR 112 (193)
T ss_pred --hC----------------------------------------------------cccccccccchHHHHHHHHHCCCE
Confidence 22 666 78899999999999999999
Q ss_pred EEEeecCCcceecccCCCHHHHHHHhhhhhcch
Q 001213 839 SVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 871 (1122)
Q Consensus 839 SvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~ 871 (1122)
+.|++. ..+..++|.|+.++++||+||+.|.
T Consensus 113 ~~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 113 IVYVPD--AIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred EEEecc--cceeeeCCCCHHHHHHHHHHHHhhh
Confidence 999963 4568999999999999999999998
No 35
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=1.8e-11 Score=141.58 Aligned_cols=210 Identities=21% Similarity=0.303 Sum_probs=157.3
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.|--|.+|-+ .||||+--.+|--+ +...++++||||.+. ..+.+-+..-.|-. +++.|.+|+--.--|.|
T Consensus 214 ifYRrRr~n~~----RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~--~P~aGlIQt~P~~~gg~ 284 (736)
T COG2943 214 IFYRRRRRNVK----RKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEA--NPDAGLIQTSPKASGGD 284 (736)
T ss_pred eeeehHhhhhc----ccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhh--CCCCceeecchhhcCcc
Confidence 66766666544 69999999998655 678999999999998 78888887777764 48999999976655553
Q ss_pred CcChhhhh----hhhhhhhhhhhhcccCCc--cccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCch
Q 001213 650 PSDRYANH----NTVFFDVNMRALDGVMGP--FYVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPE 723 (1122)
Q Consensus 650 ~~D~y~n~----~~vFfdi~~~glDGlqgp--~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1122)
..|+.- .+|+=-+.--|+.-||+. -|-|-|++.|-+|+.. .|+
T Consensus 285 --TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~------------hcg----------------- 333 (736)
T COG2943 285 --TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIE------------HCG----------------- 333 (736)
T ss_pred --hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHH------------hcC-----------------
Confidence 355532 345555677888888885 6889999999998842 111
Q ss_pred hhhhhcCCCCchhhhhhcccCccccCcchhhccchhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhccc
Q 001213 724 ENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISC 803 (1122)
Q Consensus 724 ~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC 803 (1122)
++.+.|+.
T Consensus 334 -----------------------------------Lp~LpG~~------------------------------------- 341 (736)
T COG2943 334 -----------------------------------LPPLPGRG------------------------------------- 341 (736)
T ss_pred -----------------------------------CCCCCCCC-------------------------------------
Confidence 11111110
Q ss_pred ccccccccccccccccCCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccc
Q 001213 804 WYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALL 883 (1122)
Q Consensus 804 ~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl 883 (1122)
-|-...++-|+.-+-.|.+.||.+-.. ++-.-.+.+.|.|+.|.++.-+|||+|++|-+ +++
T Consensus 342 ------------pFgG~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~-----rl~ 403 (736)
T COG2943 342 ------------PFGGHILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWCHGNLQHF-----RLF 403 (736)
T ss_pred ------------CCCccccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhhhcchhhc-----eee
Confidence 122245778999999999999965444 45677889999999999999999999999854 567
Q ss_pred cCCCcchhhhhhhhhhhhhhhhHHHH
Q 001213 884 ASPKMKLLQRIAYLNVGIYPFTSIFL 909 (1122)
Q Consensus 884 ~~~~Lsl~QRL~Yl~~~ly~l~sl~~ 909 (1122)
..++|.|..|+.++..++.|+++...
T Consensus 404 ~~~GlHwvsR~h~~tGVmsYlsaPlW 429 (736)
T COG2943 404 LVKGLHWVSRAHFLTGVMSYLSAPLW 429 (736)
T ss_pred ccCCccHHHHHHHHHHHHHHHhhHHH
Confidence 78999999999999888777765433
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.47 E-value=1.2e-11 Score=142.60 Aligned_cols=49 Identities=29% Similarity=0.349 Sum_probs=41.9
Q ss_pred CCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhh
Q 001213 366 KSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLT 419 (1122)
Q Consensus 366 ~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lT 419 (1122)
+...|.|.|+|+++ +|. ..+..++-|+++.|||. ++.++|.|||...=|
T Consensus 36 ~~~~p~VSVIIpa~---Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T 84 (384)
T TIGR03469 36 PEAWPAVVAVVPAR---NEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGT 84 (384)
T ss_pred CCCCCCEEEEEecC---CcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcH
Confidence 35789999999999 776 56789999999999995 589999999988733
No 37
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.47 E-value=3.2e-12 Score=134.37 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhh
Q 001213 822 VTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFS 877 (1122)
Q Consensus 822 VTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~s 877 (1122)
..||.+.+++++.+|+++.|++. ....-..+.++..+++|+.||+.|..|.+..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~~~--~~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLSPD--IRVYYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEcCC--eEEEEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 46999999999999999999963 4556778999999999999999999998874
No 38
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.46 E-value=1.9e-14 Score=119.35 Aligned_cols=47 Identities=55% Similarity=1.273 Sum_probs=29.7
Q ss_pred ecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 129 LGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 129 ~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
++|++++ |++|.+|.||+|+|+|||+||.+.+++++++||+||++|+
T Consensus 2 p~C~e~~--d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 2 PLCDEEL--DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp TTTS-B----CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCccccc--ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 3499998 8899999999999999999999999888999999999996
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.12 E-value=5.8e-10 Score=114.24 Aligned_cols=101 Identities=21% Similarity=0.097 Sum_probs=70.6
Q ss_pred CchhhhHHHHHhcc-ccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcCh---hhhhhhh
Q 001213 585 KKAGAMNALVRASA-IMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDR---YANHNTV 660 (1122)
Q Consensus 585 ~KAGALNallRvSa-vltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~---y~n~~~v 660 (1122)
.|++|+|..++... .-.++++|+.+|+|..+ .|++|++.+-.|.+. . ..||......+.+.+-. +.-....
T Consensus 63 gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~-~p~~l~~l~~~~~~~--~--~~v~g~~~~~~~~~~~~~~~~~~~~~~ 137 (183)
T cd06438 63 GKGYALDFGFRHLLNLADDPDAVVVFDADNLV-DPNALEELNARFAAG--A--RVVQAYYNSKNPDDSWITRLYAFAFLV 137 (183)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCC-ChhHHHHHHHHHhhC--C--CeeEEEEeeeCCccCHHHHHHHHHHHH
Confidence 59999999887531 12579999999999997 799999999998752 3 46777666655433211 1222333
Q ss_pred hhhhhhhhhcccCCcc-ccccccchhhhhhc
Q 001213 661 FFDVNMRALDGVMGPF-YVGTGCLFRRIALY 690 (1122)
Q Consensus 661 Ffdi~~~glDGlqgp~-yvGTGc~fRR~ALy 690 (1122)
++.+...+...+.+.. +.|+|.+|||++|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 168 (183)
T cd06438 138 FNRLRPLGRSNLGLSCQLGGTGMCFPWAVLR 168 (183)
T ss_pred HHHHHHHHHHHcCCCeeecCchhhhHHHHHH
Confidence 4444555666677664 57999999999984
No 40
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.11 E-value=8.5e-10 Score=114.47 Aligned_cols=102 Identities=18% Similarity=0.053 Sum_probs=76.4
Q ss_pred CchhhhHHHHHhccc-------cCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcC--h-h
Q 001213 585 KKAGAMNALVRASAI-------MSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSD--R-Y 654 (1122)
Q Consensus 585 ~KAGALNallRvSav-------ltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D--~-y 654 (1122)
.|++|||+.++.+.- -..+++|+++|+|..+ +|++|+++..+|.| ++++.||.+.++.|.+.+- + +
T Consensus 65 Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~-~~~~l~~~~~~~~~---~~v~~v~~~~~~~~~~~~~~~~~~ 140 (191)
T cd06436 65 GKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRL-DPNALEAVAPYFSD---PRVAGTQSRVRMYNRHKNLLTILQ 140 (191)
T ss_pred CHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCc-CHhHHHHHHHhhcC---CceEEEeeeEEEecCCCCHHHHHH
Confidence 599999999875310 0134899999999997 89999998888877 7999999999998865432 1 1
Q ss_pred hhhhhhhhhhhhhhhcccCCccccccccchhhhhhc
Q 001213 655 ANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 655 ~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
..+...++.+++.++..++...+.|+|++|||+||.
T Consensus 141 ~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~ 176 (191)
T cd06436 141 DLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALD 176 (191)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHH
Confidence 223344455667777666555578999999999996
No 41
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.08 E-value=8.7e-10 Score=114.74 Aligned_cols=97 Identities=24% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhhhhhhh
Q 001213 583 HNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFF 662 (1122)
Q Consensus 583 Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~~~vFf 662 (1122)
-|-|..||-++++. ...+++|+++|+|+.+ +|++|++.+..|.| ++++.|..+.++.+.+ ...+.--..|+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~---p~vglVt~~~~~~~~~--~~~~~l~~~~~ 85 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIRV-PPDYLRELVAPLAD---PGVGLVTGLPRGVPAR--GFWSRLEAAFF 85 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCeeE-CHHHHHHHHHHHhC---CCCcEEEecccccCCc--CHHHHHHHHHH
Confidence 47899999998874 2689999999999998 79999999999999 7999998877755443 22222222222
Q ss_pred ---hhhhhhhcccCCccccccccchhhhhhc
Q 001213 663 ---DVNMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 663 ---di~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
-..+..+ -..++..|....+||++|.
T Consensus 86 ~~~~~~~~a~--~~~~~~~G~~m~~rr~~L~ 114 (175)
T PF13506_consen 86 NFLPGVLQAL--GGAPFAWGGSMAFRREALE 114 (175)
T ss_pred hHHHHHHHHh--cCCCceecceeeeEHHHHH
Confidence 1222222 2346678999999999995
No 42
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.03 E-value=1.1e-08 Score=104.97 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=52.9
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.|+.+++..| +++|+|.+++. +.|+||+.+|+|.++ .|++|.+.+.+|.. .++++.|.......+.+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 124 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDIS-LPDRFEKQLDFIEK--NPEIDIVGGGVLEFDSD 124 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCcccc-CcHHHHHHHHHHHh--CCCeEEEcccEEEECCC
Confidence 45566555444 89999999974 579999999999997 79999999999975 36788888776554433
No 43
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.00 E-value=1.4e-08 Score=104.26 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=43.4
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHh-hccCCCcEEEEccCccc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFM-MDRGGDRLCYVQFPQRF 645 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff-~D~~g~~vafVQfPQrF 645 (1122)
.+|.|+|..++. +.++||+.+|+|.++ .|++|.+.+-.| .+ ++++.|+.....
T Consensus 70 g~~~a~n~g~~~----a~~d~i~~ld~D~~~-~~~~l~~~~~~~~~~---~~~~~v~~~~~~ 123 (202)
T cd04184 70 GISAATNSALEL----ATGEFVALLDHDDEL-APHALYEVVKALNEH---PDADLIYSDEDK 123 (202)
T ss_pred CHHHHHHHHHHh----hcCCEEEEECCCCcC-ChHHHHHHHHHHHhC---CCCCEEEccHHh
Confidence 479999998874 578999999999997 899999999988 44 567777665554
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.73 E-value=2.8e-07 Score=93.19 Aligned_cols=56 Identities=18% Similarity=0.061 Sum_probs=42.6
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccC
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEG 647 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~n 647 (1122)
.+++|+|.+++. ..++||+.+|+|..+ .++.+.+.+..+... ++...|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~~-~~~~~~~~~~~~~~~--~~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDTL-LPGALLAVVAAFAEH--PEVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCccc-CchHHHHHHHHHHhC--CCccEEEeeeEEEc
Confidence 389999998874 579999999999997 689999999555432 56666666555443
No 45
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.71 E-value=5.4e-06 Score=99.63 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHhC--CCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHH
Q 001213 821 SVTEDVVTGYRMHNR--GWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 875 (1122)
Q Consensus 821 sVTEDi~TglrLh~r--GWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~ 875 (1122)
.+.||=.++..|..+ |||..|++ .+.+.-.+|+++..+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~--~A~a~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVP--SAVAYTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcc--cccccccCCccHHHHHHHhhhccchhHhhH
Confidence 477998888666665 89999997 466789999999999999999999997443
No 46
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.67 E-value=5.5e-07 Score=88.40 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=53.8
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhhhhhhhhh
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDV 664 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~~~vFfdi 664 (1122)
.+++|+|.+++. .++++|+.+|+|.++ .++++.+.+-.+.+. ++++.|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~--~~~~~~~~~---------------------- 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTVV-EPGALLELLDAAEQD--PDVGIVGPK---------------------- 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcEE-CccHHHHHHHHHHhC--CCceEEEcc----------------------
Confidence 489999999974 389999999999997 789999999877763 677777665
Q ss_pred hhhhhcccCCccccccccchhhhhhc
Q 001213 665 NMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 665 ~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
+.|.+.++||+++.
T Consensus 112 ------------~~~~~~~~~~~~~~ 125 (166)
T cd04186 112 ------------VSGAFLLVRREVFE 125 (166)
T ss_pred ------------CceeeEeeeHHHHH
Confidence 77888899999875
No 47
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.62 E-value=1.8e-06 Score=95.93 Aligned_cols=42 Identities=17% Similarity=0.038 Sum_probs=37.4
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchh
Q 001213 374 VYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALL 418 (1122)
Q Consensus 374 vfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~l 418 (1122)
|+|+|+ +|++..+..|+-|+++..||....-+.|.|||.+.-
T Consensus 2 IIIp~~---N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~ 43 (299)
T cd02510 2 VIIIFH---NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKP 43 (299)
T ss_pred EEEEEe---cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCch
Confidence 789999 888899999999999999986667899999998763
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.60 E-value=1.9e-06 Score=89.79 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.0
Q ss_pred ccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch
Q 001213 372 IDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 372 VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~ 417 (1122)
|.|+|+++ +|+. .+..++.|+++..| .++.++|.|||...
T Consensus 1 vsvii~~~---n~~~-~l~~~l~sl~~q~~--~~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTL---NEAE-NLPRLLASLRRLNP--LPLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEcc---CcHH-HHHHHHHHHHhccC--CCcEEEEEeCCCCc
Confidence 57899999 7765 67999999999998 47889999998765
No 49
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.56 E-value=1.8e-06 Score=88.86 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=65.5
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
++++..+++.| +++|+|.+++ .++++||+.+|.|-+. .|+.|.+.+-.+... ++.+++.....+.+.+
T Consensus 56 ~~~~~~~~~~G-----~~~~~n~g~~----~~~g~~v~~ld~Dd~~-~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~ 123 (214)
T cd04196 56 IILIRNGKNLG-----VARNFESLLQ----AADGDYVFFCDQDDIW-LPDKLERLLKAFLKD--DKPLLVYSDLELVDEN 123 (214)
T ss_pred EEEEeCCCCcc-----HHHHHHHHHH----hCCCCEEEEECCCccc-ChhHHHHHHHHHhcC--CCceEEecCcEEECCC
Confidence 34444444434 8999998886 4689999999999997 799999999996542 6777788776654332
Q ss_pred CcChhhhhhhhhhhh--hhhhhcccCCccccccccchhhhhhc
Q 001213 650 PSDRYANHNTVFFDV--NMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 650 ~~D~y~n~~~vFfdi--~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
.. ............ ......-.......|+++++||+++.
T Consensus 124 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 165 (214)
T cd04196 124 GN-PIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLE 165 (214)
T ss_pred CC-CcccccccccccCCccCHHHHHHhCccCCceeeEEHHHHH
Confidence 21 111100000000 00111112234556888888888874
No 50
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.51 E-value=3.6e-06 Score=85.05 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=52.3
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhhhhhhhhh
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDV 664 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~~~vFfdi 664 (1122)
.|++|+|.+++ .++++||+.+|+|-.+ .|++|.+.+-++ + +.++ |..++...+.+...
T Consensus 66 ~~~~~~n~g~~----~a~g~~i~~lD~D~~~-~~~~l~~~~~~~-~---~~~~-v~g~~~~~~~~~~~------------ 123 (182)
T cd06420 66 RKAKIRNKAIA----AAKGDYLIFIDGDCIP-HPDFIADHIELA-E---PGVF-LSGSRVLLNEKLTE------------ 123 (182)
T ss_pred hHHHHHHHHHH----HhcCCEEEEEcCCccc-CHHHHHHHHHHh-C---CCcE-Eecceeecccccce------------
Confidence 58999999997 4689999999999997 799999999887 4 3444 33444333222111
Q ss_pred hhhhhcccCCccccccccchhhhhhc
Q 001213 665 NMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 665 ~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
..+.|+++.++|+++.
T Consensus 124 ----------~~~~~~~~~~~r~~~~ 139 (182)
T cd06420 124 ----------RGIRGCNMSFWKKDLL 139 (182)
T ss_pred ----------eEeccceEEEEHHHHH
Confidence 3445677777887775
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.50 E-value=6.6e-06 Score=88.56 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=44.4
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEcc
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQF 641 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQf 641 (1122)
+.++.++++.| |++|+|++++. ..++||+.+|+|... +|++|.+.+-.+.+ ++..+|..
T Consensus 70 v~~~~~~~n~G-----~~~a~n~g~~~----a~g~~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~g 128 (243)
T PLN02726 70 ILLRPRPGKLG-----LGTAYIHGLKH----ASGDFVVIMDADLSH-HPKYLPSFIKKQRE---TGADIVTG 128 (243)
T ss_pred EEEEecCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCCCCC-CHHHHHHHHHHHHh---cCCcEEEE
Confidence 44454444333 89999999873 579999999999996 89999999988876 34445544
No 52
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.49 E-value=1.8e-06 Score=91.05 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=45.4
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHH---HHhhccCCCcEEEEccCccc
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGM---CFMMDRGGDRLCYVQFPQRF 645 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~am---cff~D~~g~~vafVQfPQrF 645 (1122)
+.++..+++.| +|+|+|.+++.+.- .+++||+.+|+|.++ +|++|.+.+ ..+.. ++.++.+ .|+..
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~~--~~~~~~~-~~~~~ 117 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSVP-PPDMVEKLLAYKILSDK--NSNIGAV-GPRII 117 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCCc-CHhHHHHHHHHHHhhcc--CCCeEEE-eeeEE
Confidence 45555555444 89999999885421 267999999999997 799999986 22222 3566655 45443
No 53
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.43 E-value=7.2e-07 Score=86.72 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.|+.++++- .+++|+|.+++. ..++||+.+|+|.++ .+++|.+.+.++.+. +..+.+........+..
T Consensus 55 i~~i~~~~n~-----g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 123 (169)
T PF00535_consen 55 IRYIRNPENL-----GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKN-PPDVVIGSVIYIDDDNR 123 (169)
T ss_dssp EEEEEHCCCS-----HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHC-TTEEEEEEEEEEECTTE
T ss_pred cccccccccc-----cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhC-CCcEEEEEEEEecCCcc
Confidence 7888887642 599999999974 578899999999998 678999999999983 24444444444443332
Q ss_pred CcChhh--hhhhhhhhhhhhhhcccCCccccccccchhhhhhc
Q 001213 650 PSDRYA--NHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 650 ~~D~y~--n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
...... .....++............+.++|.++++||+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 124 YPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 222111 12234444555666777788999999999999985
No 54
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.40 E-value=1.3e-05 Score=83.68 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=44.3
Q ss_pred EEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccC
Q 001213 571 VYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFP 642 (1122)
Q Consensus 571 vYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfP 642 (1122)
.++..+++.| |++|+|+.++. +.+++|+.+|+|..+ +|++|...+..+.+ ++...|..+
T Consensus 56 ~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~g~ 114 (224)
T cd06442 56 RLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLSH-PPEYIPELLEAQLE---GGADLVIGS 114 (224)
T ss_pred EEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCCC-CHHHHHHHHHHHhc---CCCCEEEEe
Confidence 3444454444 89999999974 468999999999986 79999999999876 344445444
No 55
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.36 E-value=1.3e-07 Score=105.12 Aligned_cols=50 Identities=28% Similarity=0.871 Sum_probs=45.9
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-|++ |-+.+..+ ...|.||.|||+|||+||...+.+-+|+||.|+..|+.
T Consensus 16 ~cpl--cie~mdit--dknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPL--CIEPMDIT--DKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcc--cccccccc--cCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 4999 99998765 77899999999999999999999999999999999975
No 56
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.31 E-value=6.3e-06 Score=79.90 Aligned_cols=109 Identities=26% Similarity=0.312 Sum_probs=66.6
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
.+|+.+++..| |+.|+|.+++. .++++|+.+|+|.++ .+++|.+.+..+.. .++++.|+..+...+..
T Consensus 55 ~~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~ 122 (180)
T cd06423 55 VLVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFA--DPKVGAVQGRVRVRNGS 122 (180)
T ss_pred EEEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhcc--CCCeeeEeeeEEEecCc
Confidence 44555555444 89999999985 389999999999997 79999999666554 26676665544443332
Q ss_pred CcChhhh----hhhhhhhhhhhhhcccCC-ccccccccchhhhhhcC
Q 001213 650 PSDRYAN----HNTVFFDVNMRALDGVMG-PFYVGTGCLFRRIALYG 691 (1122)
Q Consensus 650 ~~D~y~n----~~~vFfdi~~~glDGlqg-p~yvGTGc~fRR~ALyg 691 (1122)
.+ .+.. .....+.....+...... ..+.|++.++||++|..
T Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (180)
T cd06423 123 EN-LLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALRE 168 (180)
T ss_pred Cc-ceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHHH
Confidence 11 1111 111111111222212222 45679999999999964
No 57
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.31 E-value=1.8e-05 Score=81.81 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=42.0
Q ss_pred chhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCcccc
Q 001213 586 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFE 646 (1122)
Q Consensus 586 KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~ 646 (1122)
.+.++|.+++..- ...+++++.+|+|.++ +|+++++.+-.+.+ ++++.| +|.++.
T Consensus 64 ~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~-~~~~l~~l~~~~~~---~~~~~~-~~~~~~ 118 (202)
T cd04185 64 GAGGFYEGVRRAY-ELGYDWIWLMDDDAIP-DPDALEKLLAYADK---DNPQFL-APLVLD 118 (202)
T ss_pred hhhHHHHHHHHHh-ccCCCEEEEeCCCCCc-ChHHHHHHHHHHhc---CCceEe-cceeEc
Confidence 6788888776432 4578999999999997 79999999998875 566666 344443
No 58
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.29 E-value=3.8e-05 Score=80.83 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=34.8
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMD 630 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D 630 (1122)
..+.|+|..++ .++|+||+.+|+|-+. .|+.+.+.+..+.+
T Consensus 71 G~~~a~N~g~~----~a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~ 111 (219)
T cd06913 71 GVGYAKNQAIA----QSSGRYLCFLDSDDVM-MPQRIRLQYEAALQ 111 (219)
T ss_pred cHHHHHHHHHH----hcCCCEEEEECCCccC-ChhHHHHHHHHHHh
Confidence 57888999887 4689999999999986 78999988877765
No 59
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.05 E-value=8.5e-05 Score=75.09 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=66.5
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.++-.+++.| |++|+|.+++. +.+++|+.+|+|-.+ .|++|.+.+-++.. ++..+|+.+....+..
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~g~~~~~~~~ 122 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQH-PPEDIPKLLEKLLE---GGADVVIGSRFVRGGG 122 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCCC-CHHHHHHHHHHHhc---cCCcEEEEEeecCCCc
Confidence 34555555555 99999998873 567999999999986 89999999998776 4566677666554432
Q ss_pred C-cChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcCC
Q 001213 650 P-SDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGF 692 (1122)
Q Consensus 650 ~-~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~ 692 (1122)
. ...+.....-.+......+.+..-....|...++||+++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 123 AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHH
Confidence 1 111111111111111222222222333444457999999753
No 60
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.05 E-value=0.00013 Score=76.29 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=36.0
Q ss_pred chhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhc
Q 001213 586 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMD 630 (1122)
Q Consensus 586 KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D 630 (1122)
|++|+|.+++. ..+++|+.+|+|-.. +|+++.+.+..+++
T Consensus 70 ~~~a~~~g~~~----a~gd~i~~ld~D~~~-~~~~l~~l~~~~~~ 109 (211)
T cd04188 70 KGGAVRAGMLA----ARGDYILFADADLAT-PFEELEKLEEALKT 109 (211)
T ss_pred cHHHHHHHHHH----hcCCEEEEEeCCCCC-CHHHHHHHHHHHhc
Confidence 89999999984 578999999999996 79999999999776
No 61
>PRK10073 putative glycosyl transferase; Provisional
Probab=97.93 E-value=0.00026 Score=80.78 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=37.8
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch
Q 001213 369 LPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 369 lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~ 417 (1122)
.|.|-|+|+++ +++ .....++-|+++..|+ .+-+.|.|||.+.
T Consensus 5 ~p~vSVIIP~y---N~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD 47 (328)
T PRK10073 5 TPKLSIIIPLY---NAG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTD 47 (328)
T ss_pred CCeEEEEEecc---CCH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCc
Confidence 57899999999 555 5789999999999997 6889999999876
No 62
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=97.88 E-value=0.0001 Score=92.20 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhcchh
Q 001213 822 VTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSV 872 (1122)
Q Consensus 822 VTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~l 872 (1122)
..||=.+..++..+||+.-||. ++.....+|+++.+++.||+||..|.+
T Consensus 550 ~geDR~L~~~llskgy~l~Y~a--~s~a~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 550 LGEDRWLCTLLLSKGYRLKYVA--ASDAETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred cchhHHHHHHHHhccceeeeec--cccccccCcHhHHHHHHHhhhhcccch
Confidence 8899999999999999999997 466789999999999999999999933
No 63
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.83 E-value=0.00054 Score=76.82 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=41.7
Q ss_pred cEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhc
Q 001213 569 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMD 630 (1122)
Q Consensus 569 ~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D 630 (1122)
++.|+..++.-| +|.|+|.++. ..+|+||+.+|+|.+. .|+.|.+.+-++..
T Consensus 61 ri~~i~~~~n~G-----~~~a~N~gi~----~a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDINSG-----ACAVRNQAIM----LAQGEYITGIDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCCCC-----HHHHHHHHHH----HcCCCEEEEECCCCCC-CccHHHHHHHHHHh
Confidence 467776555444 8999999887 4689999999999997 69999988887654
No 64
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.75 E-value=0.00064 Score=69.19 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=63.8
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGID 649 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid 649 (1122)
+.++..++.. .|++|+|++++. +.+++|+.+|+|... ++++|.+.+.. +++ +.++.+.+.... +..
T Consensus 57 i~~i~~~~n~-----G~~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~l~~~-~~~-~~~~v~g~~~~~--~~~ 122 (181)
T cd04187 57 VKVIRLSRNF-----GQQAALLAGLDH----ARGDAVITMDADLQD-PPELIPEMLAK-WEE-GYDVVYGVRKNR--KES 122 (181)
T ss_pred EEEEEecCCC-----CcHHHHHHHHHh----cCCCEEEEEeCCCCC-CHHHHHHHHHH-HhC-CCcEEEEEecCC--cch
Confidence 4555444433 389999999874 568999999999996 79999999988 442 345544432221 100
Q ss_pred CcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhcC
Q 001213 650 PSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALYG 691 (1122)
Q Consensus 650 ~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg 691 (1122)
...++.+ ..++ .....+.+..=+...|+.+++||+++..
T Consensus 123 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 161 (181)
T cd04187 123 WLKRLTS--KLFY-RLINKLSGVDIPDNGGDFRLMDRKVVDA 161 (181)
T ss_pred HHHHHHH--HHHH-HHHHHHcCCCCCCCCCCEEEEcHHHHHH
Confidence 0111111 1111 1222334444456678888999999964
No 65
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.71 E-value=0.00016 Score=79.50 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=51.5
Q ss_pred CcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccc
Q 001213 568 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRF 645 (1122)
Q Consensus 568 P~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF 645 (1122)
|.+.|+..+++-| .|||+|..++.. .-.++++|+.+|.|-++ .+++|.+.+.++... +.+++.|. |..+
T Consensus 45 ~~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~-~~~~~~~~-~~~~ 113 (281)
T TIGR01556 45 QKIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSRP-GNAFLAAQWKLLSAE-NGQACALG-PRFF 113 (281)
T ss_pred CCeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHhc-CCceEEEC-CeEE
Confidence 5577887665555 799999988753 22478999999999997 689999999888652 23788876 4433
No 66
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.63 E-value=0.0015 Score=61.77 Aligned_cols=51 Identities=27% Similarity=0.265 Sum_probs=40.5
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccC
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFP 642 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfP 642 (1122)
.|++++|.+++.+ ++++++++|+|.++ .|+++...+-.+.. .++...|+.+
T Consensus 64 g~~~~~~~~~~~~----~~d~v~~~d~D~~~-~~~~~~~~~~~~~~--~~~~~~v~~~ 114 (156)
T cd00761 64 GLAAARNAGLKAA----RGEYILFLDADDLL-LPDWLERLVAELLA--DPEADAVGGP 114 (156)
T ss_pred ChHHHHHHHHHHh----cCCEEEEECCCCcc-CccHHHHHHHHHhc--CCCceEEecc
Confidence 5999999888743 79999999999997 78888887555544 2677778776
No 67
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.38 E-value=0.0083 Score=68.92 Aligned_cols=52 Identities=25% Similarity=0.218 Sum_probs=39.4
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEcc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQF 641 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQf 641 (1122)
.|++|+|+.++. +.|++|+++|+|... +++.+.+.+-.+.+-..+.+..|..
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~~-~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGAT-DIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCCC-CHHHHHHHHHHHHHhhccCCceEEe
Confidence 499999999984 579999999999996 7999888888876521133444443
No 68
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=97.30 E-value=0.009 Score=67.30 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=51.2
Q ss_pred CcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCC-EEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCcccc
Q 001213 568 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGP-FILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFE 646 (1122)
Q Consensus 568 P~LvYvSREKRPg~~Hh~KAGALNallRvSavltngp-fIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~ 646 (1122)
|.+.|+.-.+.-|+ ||+.|.+++.. +.++. +++.|+-|.++ ++++|.+.+-.+... +.++.|+.-.+.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~~-~~~~l~~ll~~~~~~--~~~~~~~~~i~~~ 125 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTVV-EPDLLEELLKAAEED--PAAGVVGPLIRNY 125 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCeee-ChhHHHHHHHHHHhC--CCCeEeeeeEecC
Confidence 33556655556664 88888777753 34543 99999999775 899999999999863 6888888766654
Q ss_pred C
Q 001213 647 G 647 (1122)
Q Consensus 647 n 647 (1122)
+
T Consensus 126 ~ 126 (305)
T COG1216 126 D 126 (305)
T ss_pred C
Confidence 3
No 69
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.28 E-value=0.014 Score=64.32 Aligned_cols=44 Identities=16% Similarity=0.017 Sum_probs=34.4
Q ss_pred CcccEEEeCCCCCCCChHHHHHHHHHHHhc-CCCCCCeEEEEeCCCCch
Q 001213 370 PGIDVYVSTADPEKEPPLVTANTILSILAA-DYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 370 P~VDvfV~T~DP~~EPp~~~~nTvlS~la~-DYP~~Kls~YvsDDG~s~ 417 (1122)
|.|-|+|+|+ +|. .....|+-|++++ ..+...+-+.|.|||...
T Consensus 1 ~~vSVIi~~y---N~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD 45 (248)
T PRK10063 1 MLLSVITVAF---RNL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSND 45 (248)
T ss_pred CeEEEEEEeC---CCH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcc
Confidence 5688999999 664 4678999999864 334457899999999876
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.08 E-value=0.0093 Score=67.87 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=41.2
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEcc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQF 641 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQf 641 (1122)
.|++|+|+.++. +++++|+.+|+|....+|++|.+.+-.|... +++++|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~--~~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTD--PGVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhC--CCceEEEE
Confidence 499999998863 6899999999999744899999999988731 56676654
No 71
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=96.76 E-value=0.0044 Score=69.10 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=46.3
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCcC
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSD 652 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D 652 (1122)
-+|.|.|.++. .+++++|+.+|+|.++ .|+++.+++-+.+.-.....+++-.|..|.+.+.+.
T Consensus 75 ~~a~arN~g~~----~A~~d~l~flD~D~i~-~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~ 137 (281)
T PF10111_consen 75 SRAKARNIGAK----YARGDYLIFLDADCIP-SPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSE 137 (281)
T ss_pred CHHHHHHHHHH----HcCCCEEEEEcCCeee-CHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhH
Confidence 59999999987 3699999999999998 799999999943321113445666676766554433
No 72
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.86 E-value=0.0063 Score=69.25 Aligned_cols=55 Identities=35% Similarity=1.006 Sum_probs=46.5
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
+.+..|.| |++.. |.+...|+||.|+|.+|.+|. -...++++.||.|+++|.++-
T Consensus 247 ~v~~s~p~--~~~~~--~~~d~~~lP~~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 247 SVPPSCPI--CYEDL--DLTDSNFLPCPCGFRLCLFCH-KTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred ccCCCCCC--CCCcc--cccccccccccccccchhhhh-hcccccCCCCCccCCccccCc
Confidence 44689999 99964 445567999999999999999 566788999999999999863
No 73
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=95.07 E-value=0.67 Score=53.31 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=35.6
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMD 630 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D 630 (1122)
.|++|+|+.++. +.|++++.+|||... +|+.+.+.+-.+.+
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q~-~p~~i~~l~~~~~~ 117 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQN-PPEEIPRLVAKADE 117 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCC-CHHHHHHHHHHHHh
Confidence 489999999974 589999999999995 79999999988754
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.58 E-value=0.034 Score=63.43 Aligned_cols=56 Identities=20% Similarity=0.581 Sum_probs=48.9
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
..+.|++ |-.+.-++.+=..++. +||-.+|+.|.+.-...|.+.||.|+++.+...
T Consensus 2 d~~~CP~--Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPR--CKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCc--CCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 3579999 9999888877777888 999999999998877788899999999998754
No 75
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=89.63 E-value=0.44 Score=55.62 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=40.3
Q ss_pred CCccchHHHHHHHHhCCCeEEEeecCCcceecccCCCHHHHHHHhhhhhc
Q 001213 820 GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWAT 869 (1122)
Q Consensus 820 gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~ 869 (1122)
+.+.||...+=.+..+|||+.+.. .++-.-.|-.+...+..|-.||..
T Consensus 267 ~yLaedyFaaksllSRG~ksaist--~palQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 GYLAEDYFAAKSLLSRGWKSAIST--HPALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcc--cchhhhhhhhHHHHHHHHHHHhhh
Confidence 468999999999999999999986 455556777888899999999974
No 76
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=89.31 E-value=3.1 Score=48.55 Aligned_cols=90 Identities=13% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChH---HHHHHHHHhhccCCCcEEEEccCccccCCCCcChhhhh-h
Q 001213 583 HNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQ---ALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANH-N 658 (1122)
Q Consensus 583 Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~---~Lr~amcff~D~~g~~vafVQfPQrF~nid~~D~y~n~-~ 658 (1122)
+|+|+ |+|.++.. .+++++++||-|..+ .|+ ++.+++..+.++ ++|..|-. +|-.-.....+. .
T Consensus 83 ~hyk~-aln~vF~~----~~~~~vIILEDDl~~-sPdFf~yf~~~l~~y~~D--~~v~~ISa----~NdnG~~~~~~~~~ 150 (334)
T cd02514 83 RHYKW-ALTQTFNL----FGYSFVIILEDDLDI-APDFFSYFQATLPLLEED--PSLWCISA----WNDNGKEHFVDDTP 150 (334)
T ss_pred HHHHH-HHHHHHHh----cCCCEEEEECCCCcc-CHhHHHHHHHHHHHHhcC--CCEEEEEe----eccCCcccccCCCc
Confidence 45666 67776642 379999999999997 799 558999998863 78887765 110000000000 1
Q ss_pred hhhhhhhhhhhcccCCccccccccchhhhhhcCCCC
Q 001213 659 TVFFDVNMRALDGVMGPFYVGTGCLFRRIALYGFDP 694 (1122)
Q Consensus 659 ~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALyg~~p 694 (1122)
..+| ..-++.|.|-+.+|++-..++|
T Consensus 151 ~~ly----------rs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 151 SLLY----------RTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred ceEE----------EecCCCchHHHHHHHHHHHhCC
Confidence 1111 1235678888888888766644
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.84 E-value=0.44 Score=41.54 Aligned_cols=46 Identities=37% Similarity=0.865 Sum_probs=36.7
Q ss_pred CCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCC--CCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPG--CKEPYK 177 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~--Ck~~Yk 177 (1122)
.+..|.+ ||+++- +|+|.|-| +|+=|-=|+||++. +.|-- |++++.
T Consensus 4 ~~~~C~~--Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 4 EGCKCPV--CGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGFE 52 (54)
T ss_pred cCccChh--hCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCcc
Confidence 3568999 999864 38899999 99999999999776 55655 776653
No 78
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=86.28 E-value=8.1 Score=41.60 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=34.7
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMD 630 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D 630 (1122)
.++.+.|.++. ...+++|+.+|+|..+ .++.+.+...++.+
T Consensus 58 g~~~~~n~~~~----~a~~d~vl~lDaD~~~-~~~~~~~l~~~~~~ 98 (229)
T cd02511 58 GFGAQRNFALE----LATNDWVLSLDADERL-TPELADEILALLAT 98 (229)
T ss_pred ChHHHHHHHHH----hCCCCEEEEEeCCcCc-CHHHHHHHHHHHhC
Confidence 37889998886 3578899999999997 78999988888876
No 79
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=85.93 E-value=0.79 Score=35.87 Aligned_cols=44 Identities=27% Similarity=0.759 Sum_probs=32.5
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEP 175 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~ 175 (1122)
.|.| |.++. .+.+..=.|+-..|..|.+.-.+.++..||.|+..
T Consensus 1 ~C~i--C~~~~-----~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPI--CLEEF-----REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCc--Cchhh-----hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4788 88875 12222225889999999987777778899999975
No 80
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.49 E-value=0.43 Score=54.82 Aligned_cols=30 Identities=30% Similarity=0.953 Sum_probs=26.1
Q ss_pred CCccchhhhHhHhhcCC--CCCCCCCCCCCCC
Q 001213 150 DFKICRDCYIDAVKTGG--GICPGCKEPYKNT 179 (1122)
Q Consensus 150 ~f~iCr~Cy~~~~keg~--~~CP~Ck~~Yk~~ 179 (1122)
+|.||++|+...+.+-+ +.||.|+++|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 68999999987777666 9999999999964
No 81
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.99 E-value=3.3 Score=39.64 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=40.3
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHH
Q 001213 369 LPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFE 421 (1122)
Q Consensus 369 lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~ 421 (1122)
.|.+-|+|+|+ +|+ .....+|-|++...|+. .-+.|.|||.+.-|-+
T Consensus 2 ~~~~siiip~~---n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~ 48 (291)
T COG0463 2 MPKVSVVIPTY---NEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTE 48 (291)
T ss_pred CccEEEEEecc---chh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHH
Confidence 57799999999 666 89999999999999997 4499999999985533
No 82
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=80.97 E-value=1.6 Score=37.73 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=35.0
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.|+| |++- +.| ..+ -.||+-.||.|.+.-.++ ++.||-|+++....
T Consensus 3 ~Cpi--~~~~-~~~----Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~ 48 (63)
T smart00504 3 LCPI--SLEV-MKD----PVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHE 48 (63)
T ss_pred CCcC--CCCc-CCC----CEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChh
Confidence 6999 8884 433 111 178999999999888777 68999999988543
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=79.09 E-value=1.4 Score=44.87 Aligned_cols=52 Identities=29% Similarity=0.710 Sum_probs=39.3
Q ss_pred CCcceeecCCCccccCCCCCccccc-c-cCCccchhhhHhHhh--cCCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPC-E-CDFKICRDCYIDAVK--TGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~C-e-C~f~iCr~Cy~~~~k--eg~~~CP~Ck~~Yk~~d 180 (1122)
--.|.| |.| +...+-|+-= | |||.||-.||-.=-| .-.-+||-|||-||...
T Consensus 80 lYeCnI--C~e----tS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNI--CKE----TSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccC--ccc----ccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 457999 988 2334445544 4 899999999976555 56689999999999754
No 84
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=75.77 E-value=2.1 Score=48.97 Aligned_cols=41 Identities=27% Similarity=0.740 Sum_probs=31.6
Q ss_pred cCCCCCCcceeecCCCccccCCCCCccccc--ccCCccchhhhH
Q 001213 118 MAGAKGSSCSVLGCDANVMSDERGMDILPC--ECDFKICRDCYI 159 (1122)
Q Consensus 118 ~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C--eC~f~iCr~Cy~ 159 (1122)
+..+.|-.|+-+|||..+-... ..-=+-| -|+|..||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EP-D~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEP-DQRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCC-CCCcccCCCCchhHhHHHHHh
Confidence 3456799999999999765543 2235889 399999999996
No 85
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=72.54 E-value=75 Score=41.43 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=51.3
Q ss_pred CCccchHHHHHHHHhCCCeEEEeecCCcceecccCC-CHHHHHHHhhhhhcchhhHHhhhccccccCCCcchhhhhhhhh
Q 001213 820 GSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPI-NLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKLLQRIAYLN 898 (1122)
Q Consensus 820 gsVTEDi~TglrLh~rGWrSvY~~p~~~af~GlAP~-tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~~~Lsl~QRL~Yl~ 898 (1122)
=.+.||+..|+...+||=++.+|. -...|..-+ .+.+-+.=...=+.|+=|..+||.-.-+ +.+|.+..-+++..
T Consensus 408 lhLsEDIfaG~n~~lRGG~i~h~e---y~qcGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL-g~~ld~~R~LSfyy 483 (817)
T PF02364_consen 408 LHLSEDIFAGMNATLRGGRIKHCE---YIQCGKGRDVGFNSILNFETKIASGMGEQMLSREYYRL-GTRLDFFRFLSFYY 483 (817)
T ss_pred ccccHHHHHHHHHHhcCCceeehh---hhhcccccccCchhhhhhHhHhcCCccchhhhHHHHHh-hccCCHHHHHHHHh
Confidence 358999999999999999999984 344465433 2333333345668888888888653222 56788776666543
No 86
>PHA02929 N1R/p28-like protein; Provisional
Probab=71.93 E-value=4.2 Score=45.44 Aligned_cols=54 Identities=24% Similarity=0.601 Sum_probs=38.7
Q ss_pred CCCCcceeecCCCccccCCCCCc-c-cccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMD-I-LPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~-f-~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
.....|+| |.+.+..++-.+. | +...|+=.-|+.|...- ....+.||-||.++.
T Consensus 172 ~~~~eC~I--Cle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~W-l~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAI--CMEKVYDKEIKNMYFGILSNCNHVFCIECIDIW-KKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCcc--CCcccccCccccccceecCCCCCcccHHHHHHH-HhcCCCCCCCCCEee
Confidence 45679999 9998765432221 2 33489999999999554 446789999998764
No 87
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=2.7 Score=47.81 Aligned_cols=52 Identities=19% Similarity=0.556 Sum_probs=40.1
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.|++ |-.++-++.+=...+- +|+.++|-.|+.---.-|.+.||+|.+.....
T Consensus 2 ~Cp~--CKt~~Y~np~lk~~in-~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPK--CKTDRYLNPDLKLMIN-ECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcc--cccceecCccceeeec-cccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 5778 8877777654433333 99999999999555668889999999988764
No 88
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=70.37 E-value=2.1 Score=34.96 Aligned_cols=43 Identities=23% Similarity=0.666 Sum_probs=33.9
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCK 173 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck 173 (1122)
.|+| |.+++.. ++.++...|+=..|+.|...-.+. ++.||-||
T Consensus 2 ~C~I--C~~~~~~---~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPI--CLEEFED---GEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETT--TTCBHHT---TSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcC--CChhhcC---CCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999 9998754 666777789999999999766655 57999996
No 89
>PHA02862 5L protein; Provisional
Probab=64.82 E-value=5.4 Score=41.41 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=35.1
Q ss_pred CCcceeecCCCccccCCCCCcccccccC---CccchhhhHhHh-hcCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECD---FKICRDCYIDAV-KTGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~---f~iCr~Cy~~~~-keg~~~CP~Ck~~Yk~ 178 (1122)
+.+|.| |-++ ++++.-||.|. =-+=+.|...=. ..+...|++||++|.-
T Consensus 2 ~diCWI--C~~~-----~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWI--CNDV-----CDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEE--ecCc-----CCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 468999 9885 24447899883 234467775444 3677899999999974
No 90
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=64.48 E-value=7.9 Score=42.02 Aligned_cols=51 Identities=22% Similarity=0.492 Sum_probs=35.1
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhh---------------cCCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVK---------------TGGGICPGCKEPYKNT 179 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~k---------------eg~~~CP~Ck~~Yk~~ 179 (1122)
.+.-.|.| |.|.+- | ..+ -.|+-..|+.|.+.-.. .+...||-||++....
T Consensus 16 ~~~~~CpI--Cld~~~-d----PVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNI--CLDQVR-D----PVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCcc--CCCcCC-C----cEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 34569999 998642 1 111 27999999999964321 1246899999999754
No 91
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=60.32 E-value=8.3 Score=28.86 Aligned_cols=39 Identities=31% Similarity=0.784 Sum_probs=27.2
Q ss_pred ceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCC
Q 001213 126 CSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGC 172 (1122)
Q Consensus 126 C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~C 172 (1122)
|+| |.+. .+..+.=.|+...|..|.+.-.+.+...||.|
T Consensus 1 C~i--C~~~------~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPI--CLEE------LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCc--CccC------CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 667 7775 12222226888889999977766677889987
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=59.67 E-value=5.6 Score=45.59 Aligned_cols=39 Identities=33% Similarity=0.735 Sum_probs=29.9
Q ss_pred CCCccccc-ccCCcc--------ch--hhhHhHhhcCCCCCCCCCCCCCC
Q 001213 140 RGMDILPC-ECDFKI--------CR--DCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 140 ~G~~f~~C-eC~f~i--------Cr--~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.|.-.--| -|+||| |+ +||+=+|.+....||+|-++.-|
T Consensus 86 l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 86 LGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred cCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 34445556 788887 53 79988999999999999877654
No 93
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=57.44 E-value=6.2 Score=34.75 Aligned_cols=31 Identities=32% Similarity=0.868 Sum_probs=26.2
Q ss_pred ccCCccchhhhHhHhhcCCCCCCCCCCCCCCCCc
Q 001213 148 ECDFKICRDCYIDAVKTGGGICPGCKEPYKNTDL 181 (1122)
Q Consensus 148 eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d~ 181 (1122)
.|+=.||+.|+.-++-+| ||=|.+|.+.++.
T Consensus 24 pCgH~I~~~~f~~~rYng---CPfC~~~~~~~~~ 54 (55)
T PF14447_consen 24 PCGHLICDNCFPGERYNG---CPFCGTPFEFDDP 54 (55)
T ss_pred cccceeeccccChhhccC---CCCCCCcccCCCC
Confidence 578899999997777766 9999999987653
No 94
>PRK00420 hypothetical protein; Validated
Probab=55.91 E-value=5 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=16.0
Q ss_pred hcCCCCCCCCCCCCCCCCccc
Q 001213 163 KTGGGICPGCKEPYKNTDLDE 183 (1122)
Q Consensus 163 keg~~~CP~Ck~~Yk~~d~e~ 183 (1122)
++|.-.||.|++.+...++|+
T Consensus 37 k~g~~~Cp~Cg~~~~v~~~ee 57 (112)
T PRK00420 37 KDGEVVCPVHGKVYIVKSDEE 57 (112)
T ss_pred CCCceECCCCCCeeeeccHHH
Confidence 455588999999998766443
No 95
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.24 E-value=9.4 Score=30.46 Aligned_cols=39 Identities=21% Similarity=0.723 Sum_probs=28.0
Q ss_pred ceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCC
Q 001213 126 CSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGC 172 (1122)
Q Consensus 126 C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~C 172 (1122)
|+| |.+... +.++.-.||--.|+.|.+.-.+. +..||.|
T Consensus 1 C~i--C~~~~~-----~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPI--CLDELR-----DPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETT--TTSB-S-----SEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCC--CCCccc-----CcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 677 876432 24445589999999999887777 6999987
No 96
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.16 E-value=17 Score=39.01 Aligned_cols=46 Identities=26% Similarity=0.675 Sum_probs=36.8
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPY 176 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Y 176 (1122)
-.|+| |-+.+-. ++-+.=+||---|+.|-++++|.+ ..||-|++..
T Consensus 132 ~~CPi--Cl~~~se----k~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkI 177 (187)
T KOG0320|consen 132 YKCPI--CLDSVSE----KVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKI 177 (187)
T ss_pred cCCCc--eecchhh----ccccccccchhHHHHHHHHHHHhC-CCCCCccccc
Confidence 58999 9886543 223444999999999999999999 7999999843
No 97
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=50.63 E-value=69 Score=34.94 Aligned_cols=62 Identities=11% Similarity=0.210 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccchh--hhHHHHHHHHHHHhHHHHHHHHhhcCCCcc
Q 001213 1024 MIPPITIMMVNLIAIAVGLSRTIYSVIPQWSR--LVGGVFFSFWVLAHLYPFAKGLMGRRGRTP 1085 (1122)
Q Consensus 1024 liP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~--l~g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P 1085 (1122)
|+-=..|+++.+++++-|+..++.......|. ++...+.++++++.+|-|+.-+.+-+++.|
T Consensus 96 m~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~ 159 (226)
T COG4858 96 MWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRP 159 (226)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Confidence 33344567788888888888777643332232 223335578888888888877777555444
No 98
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=43.52 E-value=13 Score=31.08 Aligned_cols=45 Identities=27% Similarity=0.713 Sum_probs=31.5
Q ss_pred CcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
..|.| |.+..- --.|. .|+=. +|..|.+.-.+ ....||-|+++.+
T Consensus 3 ~~C~i--C~~~~~----~~~~~--pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPI--CFENPR----DVVLL--PCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TT--TSSSBS----SEEEE--TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCcc--CCccCC----ceEEe--CCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 36889 988521 12233 57788 99999976666 7799999999875
No 99
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=42.82 E-value=22 Score=37.61 Aligned_cols=51 Identities=18% Similarity=0.523 Sum_probs=36.8
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCC---ccchhhhHhHh-hcCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDF---KICRDCYIDAV-KTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f---~iCr~Cy~~~~-keg~~~CP~Ck~~Yk~~ 179 (1122)
.+..|.| |-++ +++..-||.|.= -+=+.|.+.=. ..++..|+.|+++|.-.
T Consensus 7 ~~~~CRI--C~~~-----~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWI--CKDE-----YDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEe--cCCC-----CCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4669999 9775 234457998854 34578886554 45679999999999753
No 100
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=3.9 Score=47.69 Aligned_cols=47 Identities=26% Similarity=0.710 Sum_probs=38.2
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
+|.| |-+-+-.+ ..-=||.-.+|++|.--+.+.|+.-||-||+....
T Consensus 45 ~c~i--cl~llk~t-----mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 45 ICPI--CLSLLKKT-----MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred ccHH--HHHHHHhh-----cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 8999 98865433 11128999999999999999999999999998753
No 101
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=40.97 E-value=19 Score=32.78 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=31.7
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.|+| |++ +|.| +.+. .||.-.||.|.+.-.+.++..||.|+.+....
T Consensus 6 ~CpI--t~~-lM~d----PVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 6 LCPI--TGE-LMRD----PVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp B-TT--TSS-B-SS----EEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred CCcC--cCc-HhhC----ceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 6888 554 6654 2221 67799999999999999889999999887643
No 102
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.63 E-value=23 Score=32.96 Aligned_cols=45 Identities=36% Similarity=0.944 Sum_probs=31.8
Q ss_pred cceeecCCCccccCCCCCccccc--ccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPC--ECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~C--eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-|.- ||-++--+ -.+=.-| ||-| |.+|-|... .|.||.|+-..-+
T Consensus 7 nCEC--CDrDLpp~--s~dA~ICtfEcTF--CadCae~~l---~g~CPnCGGelv~ 53 (84)
T COG3813 7 NCEC--CDRDLPPD--STDARICTFECTF--CADCAENRL---HGLCPNCGGELVA 53 (84)
T ss_pred CCcc--cCCCCCCC--CCceeEEEEeeeh--hHhHHHHhh---cCcCCCCCchhhc
Confidence 4776 88776554 3444667 9987 999986553 4799999876654
No 103
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.06 E-value=5.4e+02 Score=32.09 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHH----hheeecC
Q 001213 1062 FSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISL----LWVAINP 1108 (1122)
Q Consensus 1062 ~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~l----l~v~i~~ 1108 (1122)
.+||+=-..-..++| -.|.| +.|+.+|+.++.= |+|.++|
T Consensus 462 ~SfWIPQIv~Nvvrg----~SR~P---l~w~yIlG~Tv~Rl~~plyVF~~s 505 (636)
T KOG0828|consen 462 YSFWIPQIVANVVRG----DSRKP---LHWYYILGMTVTRLAIPLYVFGCS 505 (636)
T ss_pred HhhhHHHHHHHHhcC----CCCCC---cchhhhhhHhHHhhhcceEEEecc
Confidence 377865444444433 34677 7888888777542 5666655
No 104
>PHA02926 zinc finger-like protein; Provisional
Probab=38.25 E-value=31 Score=38.43 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=37.8
Q ss_pred CCCCcceeecCCCccccCCC-CC-ccccc-ccCCccchhhhHhHhhc-----CCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDER-GM-DILPC-ECDFKICRDCYIDAVKT-----GGGICPGCKEPYK 177 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~-G~-~f~~C-eC~f~iCr~Cy~~~~ke-----g~~~CP~Ck~~Yk 177 (1122)
.....|.| |-|.+..... ++ -|--= .|+-.-|..|...-++. +...||-||++++
T Consensus 168 SkE~eCgI--CmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGI--CYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCcc--CccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45579999 9998764321 22 12222 78888999999765543 2456999999886
No 105
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=38.19 E-value=16 Score=41.77 Aligned_cols=53 Identities=28% Similarity=0.782 Sum_probs=41.8
Q ss_pred CCccCCCCCC-cceeecCCCccccCCCCCccccc--ccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 115 HPQMAGAKGS-SCSVLGCDANVMSDERGMDILPC--ECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 115 ~~~~~~~~~~-~C~i~~Cg~~v~~~~~G~~f~~C--eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-|.+.++... -|.| |++-+- +|| .||---|-.|-..-..+- -.||-|+++...
T Consensus 16 IPSL~~LDs~lrC~I--C~~~i~--------ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~e 71 (391)
T COG5432 16 IPSLKGLDSMLRCRI--CDCRIS--------IPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCE 71 (391)
T ss_pred CcchhcchhHHHhhh--hhheee--------cceecccccchhHHHHHHHhcCC-CCCccccccHHh
Confidence 4667777766 8999 998654 799 799999999996555554 799999988753
No 106
>PRK12495 hypothetical protein; Provisional
Probab=38.10 E-value=20 Score=39.69 Aligned_cols=17 Identities=29% Similarity=0.913 Sum_probs=14.4
Q ss_pred hcCCCCCCCCCCCCCCC
Q 001213 163 KTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 163 keg~~~CP~Ck~~Yk~~ 179 (1122)
..|..+||.|.+.+.+.
T Consensus 55 ~pG~~~Cp~CQ~~~~~~ 71 (226)
T PRK12495 55 HDGQEFCPTCQQPVTED 71 (226)
T ss_pred CCCeeECCCCCCccccc
Confidence 37779999999999874
No 107
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.75 E-value=29 Score=41.70 Aligned_cols=53 Identities=17% Similarity=0.501 Sum_probs=35.6
Q ss_pred ccCCCC-CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 117 QMAGAK-GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 117 ~~~~~~-~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.+..+. .-.|.| |.+..- +.++. .|+--.|..|....... .+.||.|++++..
T Consensus 19 ~l~~Le~~l~C~I--C~d~~~-----~Pvit-pCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 19 SLYPLDTSLRCHI--CKDFFD-----VPVLT-SCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred cccccccccCCCc--Cchhhh-----CccCC-CCCCchhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 333433 348999 987431 11111 79999999999766544 4689999998764
No 108
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.23 E-value=43 Score=29.85 Aligned_cols=44 Identities=34% Similarity=0.956 Sum_probs=30.9
Q ss_pred cceeecCCCccccCCCCCccccc--ccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPC--ECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~C--eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
.|.. |+.++--+ ..+=.-| ||-| |.+|-+... .++||.|+...-
T Consensus 7 nCE~--C~~dLp~~--s~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCEC--CDKDLPPD--SPEAYICSFECTF--CADCAETML---NGVCPNCGGELV 52 (57)
T ss_pred Cccc--cCCCCCCC--CCcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCccc
Confidence 5777 88876654 3233446 8987 999985544 589999986553
No 109
>PF04641 Rtf2: Rtf2 RING-finger
Probab=32.58 E-value=35 Score=38.48 Aligned_cols=51 Identities=20% Similarity=0.468 Sum_probs=36.4
Q ss_pred CCCcceeecCCCccccCCCCC-ccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGM-DILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~-~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
..-+|+| ++..+ +|. -||+= .||=-+|..|. .+.+ ....||.|.++|+..|
T Consensus 112 ~~~~CPv--t~~~~----~~~~~fv~l~~cG~V~s~~al-ke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 112 GRFICPV--TGKEF----NGKHKFVYLRPCGCVFSEKAL-KELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred ceeECCC--CCccc----CCceeEEEEcCCCCEeeHHHH-Hhhc-ccccccccCCccccCC
Confidence 3458999 66543 354 47666 89977788887 3444 4578999999999764
No 110
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=31.72 E-value=25 Score=30.46 Aligned_cols=30 Identities=23% Similarity=0.687 Sum_probs=19.5
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhH
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDA 161 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~ 161 (1122)
.|.| ||.++|+..+ +.=+=|| ||.+|+...
T Consensus 1 ~C~i--Cg~kigl~~~----~k~~DG~-iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAI--CGKKIGLFKR----FKIKDGY-ICKDCLKKL 30 (51)
T ss_pred CCCc--cccccccccc----eeccCcc-chHHHHHHh
Confidence 5999 9999998531 1112233 888888544
No 111
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.42 E-value=2e+02 Score=32.59 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Q 001213 983 LQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFF 1062 (1122)
Q Consensus 983 i~aLLK~Lgg~~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~ 1062 (1122)
+-.++++++.++..|.-|...-+ | -++|.++|..++++-=..|..+.+ ..+++
T Consensus 155 iy~L~nlm~~~nv~f~~~aSVlG------Y----------cLLPlvvlS~v~i~~~~~g~vg~i-----------l~~~~ 207 (249)
T KOG3103|consen 155 IYFLLNLMSNKNVSFGCVASVLG------Y----------CLLPLVVLSFVNIFVGLQGTVGYI-----------LSALF 207 (249)
T ss_pred HHHHHHHHhhcCcceeeehHHHH------H----------HHHHHHHHHHHHHHHhccchHHHH-----------HHHHH
Confidence 44567777767778866643321 1 246776655554433233444433 34567
Q ss_pred HHHHHHhHHHHHHHHhhcCCCccc
Q 001213 1063 SFWVLAHLYPFAKGLMGRRGRTPT 1086 (1122)
Q Consensus 1063 ~~Wvl~~l~Pf~~GL~gRkgr~P~ 1086 (1122)
++|..+-.--++-+.+.-+++.+.
T Consensus 208 v~W~t~aaS~lfv~al~~~~~rlL 231 (249)
T KOG3103|consen 208 VLWCTYAASKLFVSALSMENQRLL 231 (249)
T ss_pred HHHHHHHHHHHHHHHhhccccchh
Confidence 888888777766665554555543
No 112
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.69 E-value=27 Score=39.87 Aligned_cols=40 Identities=33% Similarity=0.874 Sum_probs=27.2
Q ss_pred CCCCCcceeecCCCccccCCCCCccccc-ccC--------------CccchhhhHhHhhcCCCCCCCCC
Q 001213 120 GAKGSSCSVLGCDANVMSDERGMDILPC-ECD--------------FKICRDCYIDAVKTGGGICPGCK 173 (1122)
Q Consensus 120 ~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~--------------f~iCr~Cy~~~~keg~~~CP~Ck 173 (1122)
...+..|.- ||+ .-|+|| .|+ |.-|..|- .+|..+||.|-
T Consensus 226 ~~~~~~C~~--CGg--------~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CN----ENGLvrCp~Cs 280 (281)
T KOG2824|consen 226 CEGGGVCES--CGG--------ARFLPCSNCHGSCKVHEEEEDDGGVLRCLECN----ENGLVRCPVCS 280 (281)
T ss_pred CCCCCcCCC--cCC--------cceEecCCCCCceeeeeeccCCCcEEECcccC----CCCceeCCccC
Confidence 455678887 875 469999 885 45566665 45666677663
No 113
>PF15050 SCIMP: SCIMP protein
Probab=30.50 E-value=59 Score=33.06 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=25.0
Q ss_pred hhhhhhhhHhhhhhHHHHHHHH-----HHHHHHHcCCCCceEeCCC
Q 001213 962 EWWRNEQFWLIGGTSAHLAAVL-----QGLLKVIAGIEISFTLTSK 1002 (1122)
Q Consensus 962 ~WWrnqrfW~I~~tsa~l~Avi-----~aLLK~Lgg~~~~F~VTpK 1002 (1122)
+|||+ .||.|..+..-+..+. -.+.+.+.....+|+++.-
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 59996 7998876543332222 2234566667788998753
No 114
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=30.13 E-value=9.7 Score=34.30 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.6
Q ss_pred hhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 155 RDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 155 r~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
+-|++.++.+|.=+||.|+..|..
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI 65 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPI 65 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeC
Confidence 567888999999999999998853
No 115
>PRK12438 hypothetical protein; Provisional
Probab=29.84 E-value=5e+02 Score=35.10 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=28.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhh
Q 001213 1060 VFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLW 1103 (1122)
Q Consensus 1060 lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~ 1103 (1122)
.++++-.+++..-|+.+++.|+-|+|.+.+..-++.++++..+|
T Consensus 261 ~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 261 LILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556667777777899877766666666666555
No 116
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=29.36 E-value=35 Score=27.13 Aligned_cols=40 Identities=30% Similarity=0.766 Sum_probs=28.2
Q ss_pred ceeecCCCccccCCCCCcccccccCCccchhhhHhHhh-cCCCCCCCC
Q 001213 126 CSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVK-TGGGICPGC 172 (1122)
Q Consensus 126 C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~k-eg~~~CP~C 172 (1122)
|+| |.+...... .++ +|+=..|+.|...-.+ .+...||.|
T Consensus 1 C~i--C~~~~~~~~---~~~--~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPI--CLEPFEDPV---ILL--PCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETT--TSSBCSSEE---EET--TTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCc--CCccccCCC---EEe--cCCCcchHHHHHHHHHhcCCccCCcC
Confidence 677 877533211 122 6788899999988877 777889987
No 117
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=19 Score=40.82 Aligned_cols=60 Identities=18% Similarity=0.376 Sum_probs=36.3
Q ss_pred CccCCCCCCcceeecCCCccccCCCCCcccc----cccCCccchhhhHh-HhhcCCCCCCCCCCCCC
Q 001213 116 PQMAGAKGSSCSVLGCDANVMSDERGMDILP----CECDFKICRDCYID-AVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 116 ~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~----CeC~f~iCr~Cy~~-~~keg~~~CP~Ck~~Yk 177 (1122)
-|.++++.+.|+| ||.++.+++|-|-.+- =.|+---=.+|-.- .+---.|-||=||++-+
T Consensus 217 lPtkhl~d~vCaV--Cg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 217 LPTKHLSDSVCAV--CGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCcchhHh--hcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4678899999999 9999777664332221 03333322333311 01134589999999865
No 118
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=41 Score=38.92 Aligned_cols=52 Identities=27% Similarity=0.710 Sum_probs=37.4
Q ss_pred CCCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCC
Q 001213 120 GAKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPY 176 (1122)
Q Consensus 120 ~~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Y 176 (1122)
..+|-.|+| |-+++-...+ -..+|| +-.-=+.|.+.=...-...||-|+++.
T Consensus 320 a~~GveCaI--Cms~fiK~d~-~~vlPC--~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 320 ADKGVECAI--CMSNFIKNDR-LRVLPC--DHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred cCCCceEEE--Ehhhhcccce-EEEecc--CceechhHHHHHHhhhcccCCccCCCC
Confidence 346789999 9999853211 224455 444568999877887889999999975
No 119
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=3.5e+02 Score=35.20 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhh
Q 001213 1058 GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLW 1103 (1122)
Q Consensus 1058 g~lf~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~ 1103 (1122)
.+++++.-++++.+-++.+++.|.-|+|.+.++...|.++++.-+|
T Consensus 236 ~~~iL~aial~~aia~f~ai~~r~~Rip~~~~vll~l~~ii~g~~~ 281 (885)
T COG1615 236 AKLILIAIALLCAIAFFSAIFLRDLRIPAIGLVLLLLSSIIVGSLW 281 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhH
Confidence 4555566666666667777776666678777776666666665555
No 120
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=27.41 E-value=57 Score=26.77 Aligned_cols=43 Identities=21% Similarity=0.548 Sum_probs=30.3
Q ss_pred ceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCC
Q 001213 126 CSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKE 174 (1122)
Q Consensus 126 C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~ 174 (1122)
|.| |.++. +++. .+.-=.|+=-+|..|.+... .....||-|++
T Consensus 2 C~~--C~~~~--~~~~-~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNI--CFEKY--SEER-RPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcC--cCccc--cCCC-CeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 778 88887 2111 12222889999999996555 66789999985
No 121
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.09 E-value=73 Score=36.72 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=36.0
Q ss_pred CCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
+...|-+ |-|..-- -.| +||---|..|- .+--....-||.|++...-.
T Consensus 238 a~~kC~L--CLe~~~~-------pSaTpCGHiFCWsCI-~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSL--CLENRSN-------PSATPCGHIFCWSCI-LEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEE--EecCCCC-------CCcCcCcchHHHHHH-HHHHccccCCCcccccCCCc
Confidence 3458999 9986321 467 99999999999 55445557799999987643
No 122
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=24.31 E-value=21 Score=39.87 Aligned_cols=53 Identities=23% Similarity=0.602 Sum_probs=41.9
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCC--CCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICP--GCKEPYK 177 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP--~Ck~~Yk 177 (1122)
.--|+| |-.+.-++.|=...+-=||=-++|-.|....-.-|-.-|| ||.+-..
T Consensus 10 d~~CPv--CksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPV--CKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCc--cccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 347999 9998887765544444499999999999777889999999 9977554
No 123
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=24.18 E-value=28 Score=41.90 Aligned_cols=29 Identities=31% Similarity=1.081 Sum_probs=24.9
Q ss_pred CcceeecCCCccccCCCCCccccc-ccC-Cccchhhh
Q 001213 124 SSCSVLGCDANVMSDERGMDILPC-ECD-FKICRDCY 158 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~C-eC~-f~iCr~Cy 158 (1122)
..|-. |..+| +|..++-| ||. |-+|-.|+
T Consensus 15 y~C~~--C~~di----t~~i~ikCaeCp~fdLCl~CF 45 (438)
T KOG0457|consen 15 YNCDY--CSLDI----TGLIRIKCAECPDFDLCLQCF 45 (438)
T ss_pred CCCcc--HhHHh----ccceEEEeecCCCcchhHHHH
Confidence 36877 88754 48899999 999 99999999
No 124
>PRK00068 hypothetical protein; Validated
Probab=23.40 E-value=1.3e+03 Score=31.25 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhh
Q 001213 1061 FFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLW 1103 (1122)
Q Consensus 1061 f~~~Wvl~~l~Pf~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~ 1103 (1122)
++++-.++...-|+.+++.|+-|+|.+..+..++.++++..+|
T Consensus 262 iL~~ia~i~a~~~~~~~~~~~~rlp~i~~~l~v~s~~v~g~i~ 304 (970)
T PRK00068 262 ILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIVGAAW 304 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666666889888877777666666655
No 125
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=76 Score=37.74 Aligned_cols=58 Identities=22% Similarity=0.622 Sum_probs=39.1
Q ss_pred CCccCCCCCCcceeecCCCccccCC-----CCCccccc--ccCCccchhhhHhHhhcCCCCCCCCCCCC
Q 001213 115 HPQMAGAKGSSCSVLGCDANVMSDE-----RGMDILPC--ECDFKICRDCYIDAVKTGGGICPGCKEPY 176 (1122)
Q Consensus 115 ~~~~~~~~~~~C~i~~Cg~~v~~~~-----~G~~f~~C--eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Y 176 (1122)
..|+ +.+..+|.| |-|+++... +|.+..|= .||--.=-.|. .---|-.|-||=||.|.
T Consensus 280 ~eql-~n~D~~C~I--Cmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CL-knW~ERqQTCPICr~p~ 344 (491)
T COG5243 280 EEQL-TNSDRTCTI--CMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCL-KNWLERQQTCPICRRPV 344 (491)
T ss_pred hhhh-cCCCCeEEE--ecccccCCCCccCcccccCCcccccccceeeHHHH-HHHHHhccCCCcccCcc
Confidence 3465 445569999 999977653 66665554 55555555666 22346679999999994
No 126
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.78 E-value=1.3e+03 Score=27.14 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCceEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHh-hcccccchhhhHHHHHHHHHHHhHHH
Q 001213 994 EISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTI-YSVIPQWSRLVGGVFFSFWVLAHLYP 1072 (1122)
Q Consensus 994 ~~~F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i-~~~~~~w~~l~g~lf~~~Wvl~~l~P 1072 (1122)
+..|..|+|..+-.+.+- --++.++ ..++|.++++.+.+..++.|..=.= ...++ .+|.++.-.-.- +=+|
T Consensus 211 ~~dyV~~AraKGl~~~~i-~~~H~lr--NaliP~it~~~~~~~~ll~GavivE~iF~~P----GiG~l~~~Ai~~-~D~p 282 (317)
T COG0601 211 NQDYVRTARAKGLSERRI-LFKHALR--NALLPVITVLGLQLGGLLGGAVVVETVFSWP----GLGRLLVDAILN-RDYP 282 (317)
T ss_pred HhHHHHHHHHCCCCccee-hHHhhhH--hhHHHHHHHHHHHHHHHHhCHhHhhhhcCCC----ChHHHHHHHHHc-cCHH
Confidence 356777777665421111 1122233 2467888888888887777643111 11122 334443333222 3477
Q ss_pred HHHHHhhcCCCccchhHHHHHHHHHHHHHhheeecCCCC
Q 001213 1073 FAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAG 1111 (1122)
Q Consensus 1073 f~~GL~gRkgr~P~~v~~~s~ll~~~~~ll~v~i~~~~~ 1111 (1122)
.++|++. +..+..++.-.+.=+++..+||-..
T Consensus 283 li~g~~~-------i~~~~~i~~nli~Dily~~lDPRir 314 (317)
T COG0601 283 VVQGIVL-------VIALLVILGNLLVDILYALLDPRIR 314 (317)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCccC
Confidence 7766644 2222223333334468888998654
No 127
>PRK07220 DNA topoisomerase I; Validated
Probab=22.55 E-value=45 Score=43.10 Aligned_cols=48 Identities=19% Similarity=0.473 Sum_probs=29.1
Q ss_pred CcceeecCCCccccC--CCCCcccccccCCccchhhhHhHh----hcCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSD--ERGMDILPCECDFKICRDCYIDAV----KTGGGICPGCKE 174 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~--~~G~~f~~CeC~f~iCr~Cy~~~~----keg~~~CP~Ck~ 174 (1122)
..|+- ||.++... ..|..|+.|+ +||-|+..+-... +..+..||.|+.
T Consensus 590 ~~CP~--Cg~~l~~r~~r~g~~f~gCs-~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPL--CGSDLMVRRSKRGSRFIGCE-GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred ccccc--CCCeeeEEecCCCceEEEcC-CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 47998 99875432 3466799996 4666665542211 112467777764
No 128
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=22.21 E-value=2e+02 Score=31.59 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=37.8
Q ss_pred chhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHh-hccCCCcEEEE
Q 001213 586 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFM-MDRGGDRLCYV 639 (1122)
Q Consensus 586 KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff-~D~~g~~vafV 639 (1122)
-|=+.|+.++ .+.++|++-+.=|-.+.+++++.+.+-.| .| +++|.|
T Consensus 42 ~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~---~~~G~i 89 (217)
T PF13712_consen 42 MAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEED---PNIGMI 89 (217)
T ss_dssp TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH----TTEEEE
T ss_pred HHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhC---CCccEE
Confidence 5778899987 47899999999999999999999999999 67 677655
No 129
>PRK10726 hypothetical protein; Provisional
Probab=21.41 E-value=5.9e+02 Score=25.52 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHH
Q 001213 932 VTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSA 977 (1122)
Q Consensus 932 ~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa 977 (1122)
..|++|.-|+|+++.=.+++ .|+.++.++|++-.|.+..+..
T Consensus 48 lfF~LYTWPFFLALmPvsVl----vGi~l~~Ll~g~l~~s~l~t~l 89 (105)
T PRK10726 48 LFFFLYTWPFFLALMPVSVL----VGIALHSLLRGKLLYSILFTLL 89 (105)
T ss_pred HHHHHHHHHHHHHHhHHHHH----HHHHHHHHhccchhHHHHHHHH
Confidence 34566667777766544443 3666777888888888765543
No 130
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.25 E-value=32 Score=30.41 Aligned_cols=26 Identities=27% Similarity=0.675 Sum_probs=17.9
Q ss_pred cchhhhHhHh--hcCCCCCCCCCCCCCCC
Q 001213 153 ICRDCYIDAV--KTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 153 iCr~Cy~~~~--keg~~~CP~Ck~~Yk~~ 179 (1122)
+|-.|- ... +++--+||.|++||.|.
T Consensus 7 ~C~~Cg-~~~~~~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 7 KCPVCG-KKFKDGDDIVVCPECGAPYHRD 34 (54)
T ss_pred cChhhC-CcccCCCCEEECCCCCCcccHH
Confidence 344454 333 45568899999999985
No 131
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.09 E-value=54 Score=28.16 Aligned_cols=36 Identities=28% Similarity=0.760 Sum_probs=28.6
Q ss_pred CCcceeecCCCccccC-CCCCccccc-ccCCccchhhh
Q 001213 123 GSSCSVLGCDANVMSD-ERGMDILPC-ECDFKICRDCY 158 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~-~~G~~f~~C-eC~f~iCr~Cy 158 (1122)
-.-|+-++|+--+..+ ..+...+-| .|++..|..|-
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~ 55 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCK 55 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCC
Confidence 3468888898877776 347779999 89999988876
Done!