Query 001213
Match_columns 1122
No_of_seqs 438 out of 1642
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 4.5E-47 1.6E-51 467.7 49.7 493 289-1079 68-572 (802)
2 1weo_A Cellulose synthase, cat 99.9 4.5E-27 1.5E-31 213.3 7.6 63 115-179 8-71 (93)
3 1xhb_A Polypeptide N-acetylgal 99.3 4.2E-11 1.4E-15 138.3 17.6 49 366-417 25-73 (472)
4 2z86_A Chondroitin synthase; G 99.2 6.9E-11 2.4E-15 141.0 17.5 68 570-648 150-217 (625)
5 2d7i_A Polypeptide N-acetylgal 99.1 3.4E-10 1.2E-14 134.9 15.8 48 367-417 109-156 (570)
6 2ffu_A Ppgalnact-2, polypeptid 99.1 1.6E-10 5.6E-15 134.7 11.9 49 366-417 62-110 (501)
7 1qg8_A Protein (spore coat pol 99.0 4.2E-10 1.4E-14 117.8 8.3 93 585-690 75-169 (255)
8 3bcv_A Putative glycosyltransf 99.0 3.1E-09 1.1E-13 109.9 14.4 46 368-419 3-48 (240)
9 2z86_A Chondroitin synthase; G 98.8 1.3E-08 4.4E-13 121.4 13.4 104 569-690 431-534 (625)
10 4fix_A UDP-galactofuranosyl tr 98.4 2.5E-06 8.4E-11 103.9 14.6 63 570-641 242-304 (657)
11 3ckj_A Putative uncharacterize 98.3 5E-06 1.7E-10 92.1 13.1 53 585-643 118-170 (329)
12 3l7i_A Teichoic acid biosynthe 98.1 3.4E-07 1.2E-11 111.9 0.0 59 570-641 60-118 (729)
13 1e4u_A Transcriptional repress 97.4 0.00013 4.4E-09 65.8 5.2 55 122-180 10-64 (78)
14 3f1y_A Mannosyl-3-phosphoglyce 97.2 0.00039 1.3E-08 79.6 7.3 51 585-641 166-216 (387)
15 2fy7_A Beta-1,4-galactosyltran 96.9 0.00054 1.9E-08 75.4 4.7 53 823-875 201-263 (287)
16 2nxv_A ATP synthase subunits r 93.5 0.072 2.5E-06 56.4 5.6 50 586-640 62-113 (249)
17 1fo8_A Alpha-1,3-mannosyl-glyc 91.0 0.93 3.2E-05 51.2 10.9 44 369-417 1-44 (343)
18 1g25_A CDK-activating kinase a 87.5 0.5 1.7E-05 39.9 4.2 55 123-180 3-57 (65)
19 2ea6_A Ring finger protein 4; 86.9 0.62 2.1E-05 39.2 4.4 55 121-178 13-68 (69)
20 2d8s_A Cellular modulator of i 86.5 0.74 2.5E-05 41.5 4.9 56 120-179 12-71 (80)
21 2xeu_A Ring finger protein 4; 86.4 0.31 1.1E-05 40.4 2.3 55 123-180 3-58 (64)
22 1vyx_A ORF K3, K3RING; zinc-bi 84.1 0.97 3.3E-05 38.5 4.3 52 121-178 4-59 (60)
23 2ect_A Ring finger protein 126 83.9 1.4 4.8E-05 38.3 5.3 54 121-180 13-66 (78)
24 2ct2_A Tripartite motif protei 83.6 1.7 5.7E-05 38.4 5.8 55 122-180 14-70 (88)
25 2c2l_A CHIP, carboxy terminus 82.7 0.71 2.4E-05 49.1 3.5 50 121-178 206-255 (281)
26 3ng2_A RNF4, snurf, ring finge 82.1 0.88 3E-05 38.6 3.2 56 121-179 8-64 (71)
27 2ecy_A TNF receptor-associated 81.5 2.3 7.8E-05 35.9 5.6 49 123-179 15-63 (66)
28 2ysl_A Tripartite motif-contai 81.3 1.2 4.2E-05 38.0 3.9 51 122-180 19-71 (73)
29 2ckl_B Ubiquitin ligase protei 81.3 0.88 3E-05 45.5 3.4 48 124-178 55-102 (165)
30 2ecm_A Ring finger and CHY zin 80.6 1.7 5.9E-05 34.9 4.4 51 122-177 4-54 (55)
31 1t1h_A Gspef-atpub14, armadill 79.9 1.1 3.7E-05 39.0 3.1 49 123-179 8-56 (78)
32 2kre_A Ubiquitin conjugation f 79.1 1.1 3.7E-05 41.8 3.0 48 123-179 29-76 (100)
33 2ecv_A Tripartite motif-contai 78.7 2.5 8.4E-05 36.8 5.1 49 123-179 19-72 (85)
34 2ecw_A Tripartite motif-contai 78.5 2 6.7E-05 37.4 4.4 49 123-179 19-72 (85)
35 1wgm_A Ubiquitin conjugation f 78.2 1.4 4.6E-05 41.1 3.4 48 123-179 22-70 (98)
36 2kr4_A Ubiquitin conjugation f 77.4 1.3 4.3E-05 40.0 2.8 47 123-178 14-60 (85)
37 2f42_A STIP1 homology and U-bo 76.9 1.4 4.8E-05 45.6 3.3 48 123-178 106-153 (179)
38 2kiz_A E3 ubiquitin-protein li 76.3 2.7 9.2E-05 35.6 4.5 52 121-178 12-63 (69)
39 2ep4_A Ring finger protein 24; 76.3 2.9 9.8E-05 35.9 4.7 51 122-178 14-64 (74)
40 1iym_A EL5; ring-H2 finger, ub 76.1 2.8 9.7E-05 33.7 4.4 49 122-176 4-53 (55)
41 2ea5_A Cell growth regulator w 75.7 3.3 0.00011 35.8 4.9 47 119-178 11-58 (68)
42 2djb_A Polycomb group ring fin 75.0 3.5 0.00012 35.3 4.9 50 123-180 15-64 (72)
43 3fl2_A E3 ubiquitin-protein li 74.4 2 6.9E-05 40.8 3.5 47 124-178 53-99 (124)
44 2d8t_A Dactylidin, ring finger 70.1 3.5 0.00012 35.3 3.7 49 121-178 13-61 (71)
45 3lrq_A E3 ubiquitin-protein li 69.9 2.9 0.0001 38.5 3.4 47 124-178 23-70 (100)
46 2l0b_A E3 ubiquitin-protein li 69.3 3 0.0001 37.7 3.3 51 121-177 38-88 (91)
47 1jm7_A BRCA1, breast cancer ty 68.5 4.9 0.00017 37.0 4.7 48 124-179 22-71 (112)
48 1v87_A Deltex protein 2; ring- 68.5 4.4 0.00015 37.7 4.3 54 123-178 25-94 (114)
49 1x4j_A Ring finger protein 38; 65.9 3.6 0.00012 35.5 2.9 52 121-178 21-72 (75)
50 2egp_A Tripartite motif-contai 65.7 4.2 0.00015 35.0 3.4 49 123-179 12-66 (79)
51 3l11_A E3 ubiquitin-protein li 65.5 2.4 8.3E-05 39.7 1.9 47 124-178 16-62 (115)
52 1jm7_B BARD1, BRCA1-associated 64.4 5.5 0.00019 37.5 4.1 45 124-178 23-67 (117)
53 3vk6_A E3 ubiquitin-protein li 63.8 3.7 0.00013 38.9 2.7 28 152-179 23-50 (101)
54 4ayc_A E3 ubiquitin-protein li 63.8 4.1 0.00014 39.6 3.2 45 125-178 55-99 (138)
55 2ecl_A Ring-box protein 2; RNF 63.5 7.1 0.00024 34.6 4.5 55 121-178 13-76 (81)
56 2csy_A Zinc finger protein 183 63.0 9.2 0.00032 33.4 5.1 47 122-177 14-60 (81)
57 2yur_A Retinoblastoma-binding 61.0 9.4 0.00032 32.9 4.7 49 123-179 15-65 (74)
58 4ap4_A E3 ubiquitin ligase RNF 60.9 2.7 9.2E-05 39.6 1.3 56 121-179 70-126 (133)
59 1z6u_A NP95-like ring finger p 60.7 5.8 0.0002 39.4 3.7 48 124-179 79-126 (150)
60 3hct_A TNF receptor-associated 59.7 4.4 0.00015 38.2 2.6 48 124-179 19-66 (118)
61 1rmd_A RAG1; V(D)J recombinati 59.2 5.3 0.00018 37.4 3.0 49 123-179 23-71 (116)
62 2y43_A E3 ubiquitin-protein li 58.4 6.4 0.00022 35.7 3.3 47 124-178 23-69 (99)
63 2ecn_A Ring finger protein 141 57.7 3.5 0.00012 35.0 1.3 49 122-180 14-62 (70)
64 1chc_A Equine herpes virus-1 r 57.4 9.9 0.00034 31.8 4.1 49 122-178 4-52 (68)
65 2ckl_A Polycomb group ring fin 53.5 8.3 0.00028 35.6 3.3 49 123-179 15-63 (108)
66 3ztg_A E3 ubiquitin-protein li 52.9 7.5 0.00026 34.7 2.8 48 123-177 13-61 (92)
67 2y1n_A E3 ubiquitin-protein li 52.8 8.8 0.0003 44.2 3.9 48 123-178 332-379 (389)
68 3hcs_A TNF receptor-associated 51.8 6.8 0.00023 39.1 2.6 48 124-179 19-66 (170)
69 2bo4_A Mannosylglycerate synth 50.5 30 0.001 39.6 8.0 52 585-638 75-126 (397)
70 2vje_A E3 ubiquitin-protein li 50.2 6.3 0.00022 33.5 1.7 49 122-177 7-56 (64)
71 2vje_B MDM4 protein; proto-onc 48.2 7.8 0.00027 32.8 2.0 46 123-177 7-55 (63)
72 3dpl_R Ring-box protein 1; ubi 48.1 16 0.00054 34.5 4.3 53 122-177 36-100 (106)
73 4ap4_A E3 ubiquitin ligase RNF 46.8 11 0.00037 35.4 2.9 56 122-180 6-62 (133)
74 2ecg_A Baculoviral IAP repeat- 44.7 17 0.00056 31.6 3.6 42 124-178 26-68 (75)
75 2ysj_A Tripartite motif-contai 43.2 18 0.00062 29.9 3.5 43 122-172 19-63 (63)
76 2ecj_A Tripartite motif-contai 41.9 38 0.0013 27.1 5.1 43 122-172 14-58 (58)
77 2csz_A Synaptotagmin-like prot 41.6 16 0.00054 33.0 2.9 39 119-161 21-60 (76)
78 3t6p_A Baculoviral IAP repeat- 40.5 9.9 0.00034 43.0 1.8 43 123-178 295-338 (345)
79 3nw0_A Non-structural maintena 39.2 21 0.00073 38.2 4.1 48 123-178 180-229 (238)
80 1bor_A Transcription factor PM 34.9 29 0.00099 28.3 3.4 45 123-179 6-50 (56)
81 2gmg_A Hypothetical protein PF 33.0 14 0.00049 35.2 1.4 25 145-175 68-93 (105)
82 2ct0_A Non-SMC element 1 homol 32.1 46 0.0016 29.6 4.4 49 123-179 15-65 (74)
83 4ic3_A E3 ubiquitin-protein li 31.8 22 0.00075 30.8 2.3 42 124-178 25-67 (74)
84 3knv_A TNF receptor-associated 31.7 7.3 0.00025 38.3 -0.9 46 124-177 32-77 (141)
85 2lri_C Autoimmune regulator; Z 31.7 37 0.0013 29.5 3.7 47 120-175 9-59 (66)
86 2zet_C Melanophilin; complex, 30.1 6.7 0.00023 39.6 -1.5 48 121-172 66-114 (153)
87 4a0k_B E3 ubiquitin-protein li 29.8 14 0.00046 35.7 0.6 54 121-177 46-111 (117)
88 1zbd_B Rabphilin-3A; G protein 29.4 22 0.00077 35.0 2.1 36 120-160 52-89 (134)
89 1wim_A KIAA0161 protein; ring 28.1 27 0.00092 31.4 2.3 48 123-176 5-62 (94)
90 2yu4_A E3 SUMO-protein ligase 28.1 28 0.00096 31.6 2.4 49 123-178 7-63 (94)
91 1m4f_A Hepcidin; strand-loop-s 25.4 17 0.00058 26.6 0.3 9 150-158 3-11 (26)
92 2bay_A PRE-mRNA splicing facto 24.5 27 0.00091 29.6 1.4 48 124-179 4-51 (61)
93 2l43_A N-teminal domain from h 23.5 23 0.0008 32.4 0.9 59 115-177 17-77 (88)
94 2gvi_A Conserved hypothetical 22.0 18 0.00061 37.9 -0.2 27 123-160 172-202 (204)
95 3vth_A Hydrogenase maturation 20.7 40 0.0014 42.0 2.5 53 122-177 110-194 (761)
96 2yho_A E3 ubiquitin-protein li 20.6 38 0.0013 29.9 1.7 42 124-178 19-61 (79)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=4.5e-47 Score=467.74 Aligned_cols=493 Identities=21% Similarity=0.313 Sum_probs=378.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC-c----hhHHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhhhhhcCCCCCCCC
Q 001213 289 VIIFVRMAVLSLFLAWRIKHKNE-D----AVWLWGMSVVCEIWFAFSWLLDQLPKLCPINRVTDLNVLKDKFETPTPNNP 363 (1122)
Q Consensus 289 ~~~~~~lv~l~~~l~~Ri~~~~~-~----~~~lW~~~~~~E~wfa~~W~l~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~p 363 (1122)
+++++.+++.+.|++||++.+.. . ..++|++++++|+++.+.|++.++..|+|+.|.+.++.
T Consensus 68 ~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~------------- 134 (802)
T 4hg6_A 68 LLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL------------- 134 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-------------
Confidence 34555566667899999987632 2 35688899999999999999999999999998754321
Q ss_pred CCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCC
Q 001213 364 TGKSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIE 443 (1122)
Q Consensus 364 ~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCkk~~Ie 443 (1122)
.++++|.|+|+|||+ +|++.++.+|+.|++++|||.+|+.++|.|||.+.-|.+.
T Consensus 135 -~~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~--------------------- 189 (802)
T 4hg6_A 135 -QPEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS--------------------- 189 (802)
T ss_dssp -CTTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC---------------------
T ss_pred -CccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc---------------------
Confidence 146799999999999 8999999999999999999999999999999998855331
Q ss_pred CCCcccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccccCCCCCCCccCCC
Q 001213 444 PRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKGEIKAMKLQRQNRDDEPVESVKIPKATWMADGTHWPGTWMNP 523 (1122)
Q Consensus 444 pR~Pe~YFs~~~~~~~~~~~~~f~~err~~KreYeefk~ri~~l~~~~~~~~~~~~e~~~~~~~~wm~dgt~w~g~~~~~ 523 (1122)
.+++.+++ +++-...++++...
T Consensus 190 ------------------~d~~i~~~-------~~~~~~~l~~~~~~--------------------------------- 211 (802)
T 4hg6_A 190 ------------------PDPELAQK-------AQERRRELQQLCRE--------------------------------- 211 (802)
T ss_dssp ------------------SSHHHHHH-------HHHHHHHHHHHHHH---------------------------------
T ss_pred ------------------CCHHHHHH-------HHhhhHHHHHHHHh---------------------------------
Confidence 01222222 11111222222100
Q ss_pred CCCCCCCCcceeeeeeeCCCCCCCCCCCCccccccccccccCCCCcEEEEEccCCCCCCCCCchhhhHHHHHhccccCCC
Q 001213 524 SSEHSRGDHAGIIQVMLKPPSDEPLLGTAEDTKLIDLTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNG 603 (1122)
Q Consensus 524 ~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYvSREKRPg~~Hh~KAGALNallRvSavltng 603 (1122)
..+.|+.|+++ ++.||||+|.+++. +++
T Consensus 212 --------------------------------------------~~v~~i~~~~~----~~GKa~alN~gl~~----a~g 239 (802)
T 4hg6_A 212 --------------------------------------------LGVVYSTRERN----EHAKAGNMSAALER----LKG 239 (802)
T ss_dssp --------------------------------------------HTCEEEECSSC----CSHHHHHHHHHHHH----CCC
T ss_pred --------------------------------------------cCcEEEEecCC----CCcchHHHHHHHHh----cCC
Confidence 01567887763 56899999999985 589
Q ss_pred CEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCCCCc-------ChhhhhhhhhhhhhhhhhcccCCcc
Q 001213 604 PFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPS-------DRYANHNTVFFDVNMRALDGVMGPF 676 (1122)
Q Consensus 604 pfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~nid~~-------D~y~n~~~vFfdi~~~glDGlqgp~ 676 (1122)
+||+.+|||.++ +|++|++.+.+|.+ ++++++||.|+.+.|.++. +++.+++..||....++.+++++++
T Consensus 240 d~Il~lDaD~~~-~pd~L~~lv~~~~~--dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (802)
T 4hg6_A 240 ELVVVFDADHVP-SRDFLARTVGYFVE--DPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAF 316 (802)
T ss_dssp SEEEECCTTEEE-CTTHHHHHHHHHHH--SSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCC
T ss_pred CEEEEECCCCCc-ChHHHHHHHHHHhc--CCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCce
Confidence 999999999997 79999999999964 2799999999999987632 3455677889999999999999999
Q ss_pred ccccccchhhhhhcCCCCCCCCCCCCCccccccCcCccCCCcCCCchhhhhhcCCCCchhhhhhcccCccccCcchhhcc
Q 001213 677 YVGTGCLFRRIALYGFDPPRAKEHHPGCCSCCFGRHKKHSSVTNTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLVDS 756 (1122)
Q Consensus 677 yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~fi~S 756 (1122)
++|++++|||+++..
T Consensus 317 ~~G~~~~~Rr~al~~----------------------------------------------------------------- 331 (802)
T 4hg6_A 317 FCGSAAVLRRRALDE----------------------------------------------------------------- 331 (802)
T ss_dssp CCSSSEEEEHHHHHH-----------------------------------------------------------------
T ss_pred ecccchhhhHHHHHH-----------------------------------------------------------------
Confidence 999999999999852
Q ss_pred chhhhhcCCCCCCCCCCCCCCCCCCccccccccchhhHHHhhhhcccccccccccccccccccCCccchHHHHHHHHhCC
Q 001213 757 IPVAEFQGRPLADHPSVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRIGWIYGSVTEDVVTGYRMHNRG 836 (1122)
Q Consensus 757 ~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGw~~gsVTEDi~TglrLh~rG 836 (1122)
+| ||...+++||.+++++++.+|
T Consensus 332 -----vG----------------------------------------------------gf~~~~~~ED~~l~~rl~~~G 354 (802)
T 4hg6_A 332 -----AG----------------------------------------------------GFAGETITEDAETALEIHSRG 354 (802)
T ss_dssp -----HT----------------------------------------------------TCCCSSSSHHHHHHHHHHTTT
T ss_pred -----cC----------------------------------------------------CcCCCCcchHHHHHHHHHHcC
Confidence 22 677778899999999999999
Q ss_pred CeEEEeecCCcceecccCCCHHHHHHHhhhhhcchhhHHhhhccccccCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 001213 837 WKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKLLQRIAYLNVGIYPFTSIFLIVYCFLP 916 (1122)
Q Consensus 837 WrSvY~~p~~~af~GlAP~tL~~~l~QR~RWA~G~lQI~~sr~~pLl~~~~Lsl~QRL~Yl~~~ly~l~sl~~liylllP 916 (1122)
|+++|++ .+.+++.+|+|+.++++||.||++|.+|+++.+ +|++ .+++++.+|+.|+...++++.+++.++++++|
T Consensus 355 ~ri~~~~--~~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~~-~pl~-~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p 430 (802)
T 4hg6_A 355 WKSLYID--RAMIAGLQPETFASFIQQRGRWATGMMQMLLLK-NPLF-RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAP 430 (802)
T ss_dssp CCEEECC--CCCEEECCCCSHHHHHHHHHHHHHHHHHHHHHS-CTTS-CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CeEEEec--CCEEEecCCCCHHHHHHHHHHHHccHHHHHHHh-Cccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 467789999999999999999999999999864 5665 68899999999999989999999999999999
Q ss_pred HHHHHhCCeeeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001213 917 ALSLFSGQFIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEIS 996 (1122)
Q Consensus 917 ~l~LltG~~ivp~~s~~fli~llplfl~~~l~slLe~rwsGvsl~~WWrnqrfW~I~~tsa~l~Avi~aLLK~Lgg~~~~ 996 (1122)
+++++++..++......++.+++|+++...+... ... |.....|| ++.++.+ ..++.+...+...+++++.+
T Consensus 431 ~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~--~~~-~~~r~~~~-~~l~~~~----~~~~~~~a~l~~l~~~~~~~ 502 (802)
T 4hg6_A 431 LIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQN--ALF-ARQRWPLV-SEVYEVA----QAPYLARAIVTTLLRPRSAR 502 (802)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHH--HHH-TTTSCTTH-HHHHHHH----HHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHH--HHh-cCcHHHHH-HHHHHHH----HHHHHHHHHHHHHhCCCCCc
Confidence 9999999998887777777777777665443221 111 22111233 2233322 22222222233344568889
Q ss_pred eEeCCCCCCCCcCccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHhHHHHHHH
Q 001213 997 FTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKG 1076 (1122)
Q Consensus 997 F~VTpK~~~~d~~~~y~~~y~f~ws~lliP~~tLlllnLvAiv~Gi~r~i~~~~~~w~~l~g~lf~~~Wvl~~l~Pf~~G 1076 (1122)
|.||+|+...+. .+ + + .++.|.+++++++++++++|+++...... ...+.+++++|+++|++.+.-+
T Consensus 503 f~VT~Kg~~~~~--~~-----~-~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~ 569 (802)
T 4hg6_A 503 FAVTAKDETLSE--NY-----I-S-PIYRPLLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFA 569 (802)
T ss_dssp CCCCCCCCCCSS--CC-----B-C-TTCHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceECCCCccccc--cc-----h-h-hHHHHHHHHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHH
Confidence 999999875421 11 1 2 46789999999999999999998876432 2335678899999999999988
Q ss_pred Hhh
Q 001213 1077 LMG 1079 (1122)
Q Consensus 1077 L~g 1079 (1122)
+..
T Consensus 570 ~~~ 572 (802)
T 4hg6_A 570 LRA 572 (802)
T ss_dssp HTT
T ss_pred HHH
Confidence 864
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=99.93 E-value=4.5e-27 Score=213.26 Aligned_cols=63 Identities=30% Similarity=0.716 Sum_probs=61.4
Q ss_pred CCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 115 HPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 115 ~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
+++|+.+++|+||| |||+||++++|++|||| ||+|||||+|||||||||+|.|||||++|||+
T Consensus 8 ~kp~~~~~~qiCqi--CGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 8 PKPLKNLDGQFCEI--CGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCCSCCSSCBCSS--SCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCcccccCCCcccc--ccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 67899999999999 99999999999999999 99999999999999999999999999999975
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.28 E-value=4.2e-11 Score=138.27 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch
Q 001213 366 KSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 366 ~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~ 417 (1122)
++++|.|.|+|+|+ +|+...+..||-|+++.+||..+.-++|.|||...
T Consensus 25 ~~~~p~vSVIIp~y---N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d 73 (472)
T 1xhb_A 25 PDNLPTTSVVIVFH---NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER 73 (472)
T ss_dssp CSCCCCEEEEEEES---SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCC
T ss_pred CcCCCCeEEEEEeC---CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCc
Confidence 36799999999999 88878999999999999999777899999999875
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.24 E-value=6.9e-11 Score=140.96 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=54.1
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCC
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGI 648 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~ni 648 (1122)
+.|+.+++. .+.||+|+|.+++. +.++||+.+|+|+++ .|++|.+.+.+|... +.++.|+..+.+.+.
T Consensus 150 i~~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~~--~~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 150 IKYVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAVD--DNVALIGPRKYIDTS 217 (625)
T ss_dssp EEEEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHHC--TTEEEECCEEEECCT
T ss_pred eEEEEeCCC----CcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhcC--CceEEEEeeeeccCc
Confidence 667765431 23599999999974 589999999999998 799999999999852 688888887766543
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.13 E-value=3.4e-10 Score=134.93 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch
Q 001213 367 SDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 367 ~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~ 417 (1122)
+++|.|.|+|+|+ +|+...+..||-|+++..||...+-++|.|||...
T Consensus 109 ~~~P~vSVIIp~y---Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D 156 (570)
T 2d7i_A 109 ETLPNTSIIIPFH---NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR 156 (570)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC
T ss_pred CCCCCeEEEEEEC---CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc
Confidence 5799999999999 78778999999999999999766789999999876
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.11 E-value=1.6e-10 Score=134.74 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=43.7
Q ss_pred CCCCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch
Q 001213 366 KSDLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 366 ~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~ 417 (1122)
++++|.|.|+|+|+ +|+...+..||.|+++..||....-+.|.|||...
T Consensus 62 ~~~~p~vSVIIp~y---N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D 110 (501)
T 2ffu_A 62 RVDLPATSVVITFH---NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSND 110 (501)
T ss_dssp CSSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSC
T ss_pred CcCCCCEEEEEEeC---cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCc
Confidence 35799999999999 88876899999999999999766789999999876
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.01 E-value=4.2e-10 Score=117.76 Aligned_cols=93 Identities=9% Similarity=-0.036 Sum_probs=61.2
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCcccc--CCCCcChhhhhhhhhh
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFE--GIDPSDRYANHNTVFF 662 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~--nid~~D~y~n~~~vFf 662 (1122)
.+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+-.|... +++++|.....+. +.+.. .........
T Consensus 75 G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~- 145 (255)
T 1qg8_A 75 RYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTH--PEKAVIYSASKTYHLNENRD-IVKETVRPA- 145 (255)
T ss_dssp HHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHC--TTCCEEEEEEEEEEEC---C-EEEEEEECC-
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHhC--CCceEEEeceEEEEeCCCCc-chhhccCch-
Confidence 499999999974 589999999999998 799999999999862 5778887776655 22211 111000000
Q ss_pred hhhhhhhcccCCccccccccchhhhhhc
Q 001213 663 DVNMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 663 di~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
..+.........|++.++||+++.
T Consensus 146 ----~~~~~~~~~~~~~~~~~~rr~~~~ 169 (255)
T 1qg8_A 146 ----AQVTWNAPCAIDHCSVMHRYSVLE 169 (255)
T ss_dssp ----CSCBSCCTTTSCGGGEEEETHHHH
T ss_pred ----HHHHHhhcCCCccceEEEEHHHHH
Confidence 011113334456778888888874
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.00 E-value=3.1e-09 Score=109.92 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhh
Q 001213 368 DLPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLT 419 (1122)
Q Consensus 368 ~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~lT 419 (1122)
..|.|.|+|+|+ +++ ..+..++-|+++.+|| .+-++|.|||...-|
T Consensus 3 ~~p~vsViIp~y---n~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t 48 (240)
T 3bcv_A 3 LIPKVSVIVPIY---NVE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNC 48 (240)
T ss_dssp CCCSEEEEEEES---SCT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSH
T ss_pred CCCcEEEEEecC---CCH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCH
Confidence 468899999999 665 6788999999999998 688999999987633
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.83 E-value=1.3e-08 Score=121.43 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=67.2
Q ss_pred cEEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCccccCC
Q 001213 569 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGI 648 (1122)
Q Consensus 569 ~LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQrF~ni 648 (1122)
++.++. ++.. .+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..|... +++++|.....+.+.
T Consensus 431 ~i~~~~-~~n~-----G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~~--~~~~~v~~~~~~~~~ 497 (625)
T 2z86_A 431 RVRFIS-QKNK-----GIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRKD--LSLACVYTTNRNIDR 497 (625)
T ss_dssp TEEEEE-ECCC-----CHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHHC--TTCSEEEEEEEEECT
T ss_pred cEEEEe-CCCC-----CHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHhC--CCeeEEEeeeEEECC
Confidence 356664 3333 499999999974 589999999999997 899999999888642 678888877665443
Q ss_pred CCcChhhhhhhhhhhhhhhhhcccCCccccccccchhhhhhc
Q 001213 649 DPSDRYANHNTVFFDVNMRALDGVMGPFYVGTGCLFRRIALY 690 (1122)
Q Consensus 649 d~~D~y~n~~~vFfdi~~~glDGlqgp~yvGTGc~fRR~ALy 690 (1122)
+..-........ ....+.+...+++|.+.++||+++.
T Consensus 498 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~r~~~~ 534 (625)
T 2z86_A 498 EGNLISNGYNWP-----IYSREKLTSAMICHHFRMFTARAWN 534 (625)
T ss_dssp TSCEEEECCCCS-----SCCHHHHTTSCCCCSCEEEEHHHHT
T ss_pred CCCEeccCcccc-----cCCHHHHhhcccCCceEEEEHHHHH
Confidence 321110000000 0011223345567777888888764
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.35 E-value=2.5e-06 Score=103.90 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=46.8
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEcc
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQF 641 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQf 641 (1122)
+.|+..+ .. ..|||.|..++...-.++++||+.+|.|-++ .|++|.+.+.+|... ++++.|+.
T Consensus 242 I~vI~~~-N~-----G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~-~pd~L~~ll~~l~~~--~~~~~vg~ 304 (657)
T 4fix_A 242 LSIHDQP-NL-----GGSGGYSRVMYEALKNTDCQQILFMDDDIRL-EPDSILRVLAMHRFA--KAPMLVGG 304 (657)
T ss_dssp EEEEECC-CC-----HHHHHHHHHHHHHHHHCCCSEEEEECSSEEE-CTHHHHHHHHHHHHB--SSCCEEEE
T ss_pred EEEEECC-CC-----CHHHHHHHHHHHHHhcCCCCEEEEECCCCcc-ChhHHHHHHHHHHhC--CCcEEEEe
Confidence 6666543 33 3799999988754222378999999999998 799999999999863 45555553
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.26 E-value=5e-06 Score=92.06 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=42.7
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEccCc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQ 643 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQfPQ 643 (1122)
.|++|+|..++. ++|+||+.+|+|.+...|++|.+.+..|... +++++|+...
T Consensus 118 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~--~~~~~v~g~~ 170 (329)
T 3ckj_A 118 GKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTG--DGVHLVKSFY 170 (329)
T ss_dssp SHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSC--SSCCEEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhC--CCccEEEEEe
Confidence 399999999974 5899999999999833789999999987642 5677776643
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.12 E-value=3.4e-07 Score=111.92 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred EEEEEccCCCCCCCCCchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEcc
Q 001213 570 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQF 641 (1122)
Q Consensus 570 LvYvSREKRPg~~Hh~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQf 641 (1122)
+.|+..++..| +++|.|.+++ ...|+||+.+|+|.++ .|++|.+.+..|.+ ..+++...
T Consensus 60 i~~i~~~~n~G-----~~~arN~gi~----~A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~---~d~v~~~~ 118 (729)
T 3l7i_A 60 IRFIDLDENSG-----HAHARNIALE----EVETPYFMFLDADDEL-ASYAITFYLEKFNN---TDGLIAPI 118 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEECCCCCC-----HHHHHHHHHH----hccCCEEEEECCCCCC-ChhHHHHHHHHhcC---CCEEEEee
Confidence 55555554334 7999999997 4589999999999998 79999999999884 45554443
No 13
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.42 E-value=0.00013 Score=65.76 Aligned_cols=55 Identities=27% Similarity=0.892 Sum_probs=46.1
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
....|+| |-+.+.. +.-.|.||.||...|+.|+....++++..||.||++|...+
T Consensus 10 ~~~~CpI--Cle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPL--CMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTT--TCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCc--cCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4568999 9997643 34569999999999999998877778899999999998754
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.21 E-value=0.00039 Score=79.61 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=41.0
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEEEcc
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQF 641 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vafVQf 641 (1122)
.|++|+|..++. ..++||+.+|+|....+|++|.+.+..+.+. +++.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~--p~~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEV--PGVRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHS--TTCCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHC--CCceEEEE
Confidence 399999999974 5799999999999933799999999988752 45555544
No 15
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=96.91 E-value=0.00054 Score=75.40 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=39.6
Q ss_pred cchHHHHHHHHhCCCeEEEeecCCcce----------ecccCCCHHHHHHHhhhhhcchhhHH
Q 001213 823 TEDVVTGYRMHNRGWKSVYCVTKRDAF----------RGTAPINLTDRLHQVLRWATGSVEIF 875 (1122)
Q Consensus 823 TEDi~TglrLh~rGWrSvY~~p~~~af----------~GlAP~tL~~~l~QR~RWA~G~lQI~ 875 (1122)
.||+++.+||+.+||+..+.++....+ ....|+.+..+.+|+.||+++.+..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999887432111111 23578999999999999999988765
No 16
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=93.46 E-value=0.072 Score=56.43 Aligned_cols=50 Identities=4% Similarity=0.026 Sum_probs=39.8
Q ss_pred chhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhcc--CCCcEEEEc
Q 001213 586 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDR--GGDRLCYVQ 640 (1122)
Q Consensus 586 KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~--~g~~vafVQ 640 (1122)
.|.|+|..++. ..|+||+.||.|-++ ++++|.+.+-+|... ..++++.|-
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~~vg~vg 113 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADPKWLVAG 113 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCCCeeEEe
Confidence 37899999974 579999999999998 799999999988741 125777663
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=90.97 E-value=0.93 Score=51.25 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch
Q 001213 369 LPGIDVYVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL 417 (1122)
Q Consensus 369 lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~Kls~YvsDDG~s~ 417 (1122)
|+.+-|.|.|+ +-| . +..++-|++....+.++.-++|||||...
T Consensus 1 ~~~~pViI~~y---NRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIAC---DRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEES---SCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEEC---CcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 34567889999 777 6 99999999999988888899999999653
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.54 E-value=0.5 Score=39.89 Aligned_cols=55 Identities=20% Similarity=0.650 Sum_probs=38.9
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
...|+| |.++...+.. ..++.=.||-..|+.|.+.-...+...||-|++++...+
T Consensus 3 ~~~C~I--C~~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPR--CKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCST--TTTHHHHCSS-CCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCc--CCCCccCCCc-cCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 457999 9884333221 112223788889999997765667789999999998754
No 19
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.85 E-value=0.62 Score=39.20 Aligned_cols=55 Identities=25% Similarity=0.631 Sum_probs=40.2
Q ss_pred CCCCcceeecCCCccccCC-CCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDE-RGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~-~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.....|.| |.+.+.... .++.++.-.|+-..|+.|...-.+. ...||-|++++..
T Consensus 13 ~~~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTT--TCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcc--cCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999 999865432 3444444588999999999766555 6899999998753
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.48 E-value=0.74 Score=41.46 Aligned_cols=56 Identities=20% Similarity=0.474 Sum_probs=41.7
Q ss_pred CCCCCcceeecCCCccccCCCCCcccccccC---CccchhhhHhHhhc-CCCCCCCCCCCCCCC
Q 001213 120 GAKGSSCSVLGCDANVMSDERGMDILPCECD---FKICRDCYIDAVKT-GGGICPGCKEPYKNT 179 (1122)
Q Consensus 120 ~~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~---f~iCr~Cy~~~~ke-g~~~CP~Ck~~Yk~~ 179 (1122)
......|.| |-++.. +++....||.|. --+.+.|.+.=.+. +...||-||.+|...
T Consensus 12 ~~~~~~C~I--C~~~~~--~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRI--CHCEGD--DESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSS--SCCCCC--SSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeE--cCcccc--CCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345678999 988643 334568899885 78999999666554 347999999999753
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=86.42 E-value=0.31 Score=40.44 Aligned_cols=55 Identities=25% Similarity=0.615 Sum_probs=40.9
Q ss_pred CCcceeecCCCccccCC-CCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDE-RGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~-~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
...|+| |.+...... .++..+.-.|+-..|+.|.+.-.+. +..||-|++++...+
T Consensus 3 ~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTT--TCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCc--cChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 468999 999865432 3444455589999999999766555 689999999987643
No 22
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=84.13 E-value=0.97 Score=38.55 Aligned_cols=52 Identities=17% Similarity=0.438 Sum_probs=38.4
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCC---ccchhhhHhHhhc-CCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDF---KICRDCYIDAVKT-GGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f---~iCr~Cy~~~~ke-g~~~CP~Ck~~Yk~ 178 (1122)
..+..|.| |-++ ++++.+.||.|.= -+=+.|...=++. ++..||-||.+|..
T Consensus 4 ~~~~~CrI--C~~~----~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWI--CNEE----LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETT--TTEE----CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEE--eecC----CCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45678999 9885 2345689999865 5657788665554 67899999999963
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.88 E-value=1.4 Score=38.29 Aligned_cols=54 Identities=19% Similarity=0.556 Sum_probs=38.1
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
.....|.| |.+.+.. ++..+.-.|+-..|+.|...-.+. ...||-||.++...+
T Consensus 13 ~~~~~C~I--C~~~~~~---~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPV--CKEDYAL---GESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTT--TTSCCCT---TSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSC
T ss_pred CCCCCCee--CCccccC---CCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcc
Confidence 34668999 9997542 333322257888999999655544 479999999987643
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.64 E-value=1.7 Score=38.36 Aligned_cols=55 Identities=22% Similarity=0.524 Sum_probs=39.2
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcC--CCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTG--GGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg--~~~CP~Ck~~Yk~~d 180 (1122)
....|+| |.+....+ ....+.-.|+-..|+.|...-.+.. ...||-|+++++..+
T Consensus 14 ~~~~C~I--C~~~~~~~--~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPI--CMESFTEE--QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTT--TCCBCCTT--SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCcc--CCcccccc--CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3468999 99875432 1112223789999999997766543 589999999988754
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=82.65 E-value=0.71 Score=49.11 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=37.1
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
..--.|+| |.+ +|.| +.+ -.||.-.||.|-+.-.+.+...||-|+++...
T Consensus 206 ~~~~~c~i--~~~-~~~d----Pv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKI--SFE-LMRE----PCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTT--TCS-BCSS----EEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcC--cCC-HhcC----CeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34558999 987 3433 211 15899999999988887776679999999864
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=82.07 E-value=0.88 Score=38.63 Aligned_cols=56 Identities=25% Similarity=0.641 Sum_probs=41.5
Q ss_pred CCCCcceeecCCCccccC-CCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSD-ERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~-~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.....|+| |.+.+... ++++..+.-.|+-..|+.|...-.+.. ..||-|+++....
T Consensus 8 ~~~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTT--TCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCC
T ss_pred CCCCCCcc--cChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChh
Confidence 34568999 99986543 245544555899999999996655544 7999999998754
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.53 E-value=2.3 Score=35.87 Aligned_cols=49 Identities=20% Similarity=0.558 Sum_probs=37.3
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
...|+| |.+.+.. ..+ -.|+-..|+.|.+.-.+.+...||-|+.++...
T Consensus 15 ~~~C~I--C~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEK--CHLVLCS-----PKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTT--TCCEESS-----CCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCC--CChHhcC-----eeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 458999 9886431 111 268888999999887777778999999998764
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.30 E-value=1.2 Score=38.02 Aligned_cols=51 Identities=20% Similarity=0.489 Sum_probs=37.3
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhh--cCCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVK--TGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~k--eg~~~CP~Ck~~Yk~~d 180 (1122)
....|+| |.+.... -..+ .|+-..|+.|...-.+ .+...||-|++++...+
T Consensus 19 ~~~~C~I--C~~~~~~----~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPI--CLDILQK----PVTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTT--TCSBCSS----EEEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEecc--CCcccCC----eEEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3568999 9986431 1122 7888899999977665 35679999999987643
No 29
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=81.26 E-value=0.88 Score=45.52 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=37.7
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-.|+| |.+.+. +..+...|+--.|+.|.+.-.+.+...||-|+.++..
T Consensus 55 ~~C~I--C~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPI--CLDMLK-----NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTT--TSSBCS-----SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcc--cChHhh-----CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999 988643 1222238999999999988888878999999999864
No 30
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.59 E-value=1.7 Score=34.94 Aligned_cols=51 Identities=25% Similarity=0.603 Sum_probs=36.6
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
....|.| |.+.+... ++..+.=.|+-..|+.|...-.+.. ..||-|+.+..
T Consensus 4 ~~~~C~I--C~~~~~~~--~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPI--CLEDIHTS--RVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTT--TCCCCCTT--TSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcc--cChhhcCC--CcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 4568999 99976432 2222222678899999997666665 89999998763
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.85 E-value=1.1 Score=38.97 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+. +.+ ..+ ..||.-.|+.|.+.-.+.+...||.|+++....
T Consensus 8 ~~~C~I--C~~~-~~~----Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 8 YFRCPI--SLEL-MKD----PVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSCTT--TSCC-CSS----EEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cCCCCC--cccc-ccC----CEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 458999 9874 322 222 279999999999888888789999999998754
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=79.07 E-value=1.1 Score=41.84 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=36.0
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+ +|.| +.+. .||.-.||.|-+.-.+ +++.||.|+++....
T Consensus 29 ~~~CpI--~~~-~m~d----PV~~-~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 29 EFRDPL--MDT-LMTD----PVRL-PSGTIMDRSIILRHLL-NSPTDPFNRQTLTES 76 (100)
T ss_dssp TTBCTT--TCS-BCSS----EEEE-TTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTT
T ss_pred hhCCcC--ccC-cccC----CeEC-CCCCEEchHHHHHHHH-cCCCCCCCCCCCChh
Confidence 458999 876 4543 2211 5899999999987776 468999999998753
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.69 E-value=2.5 Score=36.77 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=36.2
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc-----CCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT-----GGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke-----g~~~CP~Ck~~Yk~~ 179 (1122)
...|+| |.+.... -..+ .|+-..|+.|...-.+. +...||-|+++....
T Consensus 19 ~~~C~I--C~~~~~~----p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 19 EVTCPI--CLELLTQ----PLSL--DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCTT--TCSCCSS----CBCC--SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCC--CCcccCC----ceeC--CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 468999 9986521 1222 68888999999765443 478999999998864
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.46 E-value=2 Score=37.41 Aligned_cols=49 Identities=27% Similarity=0.694 Sum_probs=36.4
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc-----CCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT-----GGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke-----g~~~CP~Ck~~Yk~~ 179 (1122)
...|+| |.+.... -.. ..|+-..|+.|...-.+. +...||-|++++...
T Consensus 19 ~~~C~I--C~~~~~~----p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPI--CLELLKE----PVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTT--TCSCCSS----CEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcC--CChhhCc----cee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 458999 9886431 123 358888999999776555 378999999998764
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=78.19 E-value=1.4 Score=41.06 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=36.0
Q ss_pred CCcceeecCCCccccCCCCCcccccccC-CccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECD-FKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~-f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+ +|.| +.+ -.|| .-.||.|-+.-.++ ++.||.|++++...
T Consensus 22 ~~~CpI--~~~-~m~d----PV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 22 EFLDPI--MST-LMCD----PVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTBCTT--TCS-BCSS----EEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred hcCCcC--ccc-cccC----CeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence 458999 876 5554 211 1688 99999999877765 68999999998753
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=77.36 E-value=1.3 Score=40.00 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=35.6
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.-.|+| |.+ +|.| +.+. .||.-.||.|-+.-.+. ++.||.|++++..
T Consensus 14 ~~~CpI--~~~-~m~d----PV~~-~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPL--MDT-LMTD----PVRL-PSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTT--TCS-BCSS----EEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred heECcc--cCc-hhcC----CeEC-CCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 458999 876 4543 2221 59999999999877764 6899999999864
No 37
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=76.93 E-value=1.4 Score=45.63 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.-.|+| |.+ +|.| +.+. .||.-.||.|-+.-...++..||.|++++..
T Consensus 106 ~f~CPI--~~e-lm~D----PV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKI--SFE-LMRE----PCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTT--TCS-BCSS----EEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccC--ccc-cCCC----CeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 348999 877 5654 3332 6999999999988877654479999999864
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.35 E-value=2.7 Score=35.56 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=36.9
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.....|.| |.+.+.. ++..+.-.|+-..|+.|...-.+. +..||-|+.+...
T Consensus 12 ~~~~~C~I--C~~~~~~---~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTI--CLSILEE---GEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTT--TTBCCCS---SSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCee--CCccccC---CCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 34568999 9987642 343333367888899999655554 4679999998765
No 39
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.33 E-value=2.9 Score=35.90 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=36.9
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
....|.| |.+.+.. ++..+...|+-..|+.|...-.+.. ..||-|+.++..
T Consensus 14 ~~~~C~I--C~~~~~~---~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAV--CLEDFKP---RDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSS--SCCBCCS---SSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred CCCCCcC--CCcccCC---CCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 3568999 9998543 3333333678889999996655544 699999998865
No 40
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=76.14 E-value=2.8 Score=33.74 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=35.0
Q ss_pred CCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPY 176 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Y 176 (1122)
....|.| |.+++.. |+..+-. .|+-..|+.|...-.+. +..||-||.++
T Consensus 4 ~~~~C~I--C~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAV--CLAELED---GEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTT--TCCCCCT---TSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCcCcc--CCccccC---CCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 4568999 9997643 3333333 58888999999554443 68999999875
No 41
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.67 E-value=3.3 Score=35.84 Aligned_cols=47 Identities=23% Similarity=0.632 Sum_probs=33.7
Q ss_pred CCCCCCcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 119 AGAKGSSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 119 ~~~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.......|.| |-+. +..-.|+|| +=. +|..|... ...||-|+++...
T Consensus 11 ~~~~~~~C~I--C~~~----~~~~v~~pC--gH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVV--CQNG----TVNWVLLPC--RHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSS--SSSS----CCCCEETTT--TBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCC--cCcC----CCCEEEECC--CChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3445678999 9884 334567777 222 79999962 4899999998875
No 42
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.01 E-value=3.5 Score=35.34 Aligned_cols=50 Identities=22% Similarity=0.554 Sum_probs=35.7
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
...|+| |.+.... ..+.-.|+-..|+.|...-.+. ...||-|+++++..+
T Consensus 15 ~~~C~I--C~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSI--CKGYLID-----ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTT--TSSCCSS-----CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred CCCCCC--CChHHHC-----cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccc
Confidence 458999 9875421 2221267777899999776655 589999999998653
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=74.43 E-value=2 Score=40.85 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=35.6
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-.|+| |.+.+- + -..+ .||--.|+.|...-.+.+...||.|++++..
T Consensus 53 ~~C~I--C~~~~~-~---p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCIC--CQELVF-R---PITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTT--TSSBCS-S---EEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCc--CChHHc-C---cEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999 988543 1 1122 7888899999977777666699999999975
No 44
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.09 E-value=3.5 Score=35.27 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=35.1
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.....|.| |.+.+.. -..+ .|+-..|+.|...-.+.. ..||-||.++..
T Consensus 13 ~~~~~C~I--C~~~~~~----~~~~--~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAI--CLQTCVH----PVSL--PCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSS--SSSBCSS----EEEE--TTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred CCCCCCcc--CCcccCC----CEEc--cCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 44568999 9986421 1334 577778999996545444 899999999874
No 45
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=69.89 E-value=2.9 Score=38.46 Aligned_cols=47 Identities=23% Similarity=0.601 Sum_probs=36.9
Q ss_pred CcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-.|.| |.+.+- +=+-| .|+--.|+.|...-.+.....||-|+.++..
T Consensus 23 ~~C~I--C~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFI--CMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTT--TCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCcc--CCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 47999 998653 22444 7899999999987777766799999999864
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.31 E-value=3 Score=37.66 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=36.2
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
.....|.| |.+.+.. |+..+...|+-..|+.|...-.+ .+..||-|+.+..
T Consensus 38 ~~~~~C~I--C~~~~~~---~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPI--CCSEYVK---GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETT--TTEECCT---TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcc--cChhhcC---CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 34568999 9987542 44443335888899999955444 4579999998764
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.51 E-value=4.9 Score=37.00 Aligned_cols=48 Identities=23% Similarity=0.621 Sum_probs=34.5
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc--CCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT--GGGICPGCKEPYKNT 179 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke--g~~~CP~Ck~~Yk~~ 179 (1122)
..|+| |.+..- + -.. ..|+-..|+.|...-.+. +...||-|+.+....
T Consensus 22 ~~C~I--C~~~~~-~---p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPI--CLELIK-E---PVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSS--SCCCCS-S---CCB--CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcc--cChhhc-C---eEE--CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 47999 988542 1 112 268888899999776654 335899999998764
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=68.47 E-value=4.4 Score=37.67 Aligned_cols=54 Identities=20% Similarity=0.449 Sum_probs=37.6
Q ss_pred CCcceeecCCCccccCCC-----------CCccccc-ccCCccchhhhHhHhh----cCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDER-----------GMDILPC-ECDFKICRDCYIDAVK----TGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~-----------G~~f~~C-eC~f~iCr~Cy~~~~k----eg~~~CP~Ck~~Yk~ 178 (1122)
...|.| |-+.+...+. -...+-. .|+=..|+.|...-.+ .....||-||+.|..
T Consensus 25 ~~~C~I--Cl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCII--CMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETT--TTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCcc--CChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999 9998754321 1112223 6888999999976554 456799999999974
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.85 E-value=3.6 Score=35.50 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=36.8
Q ss_pred CCCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.....|.| |.+++.. ++..+.-.|+-..|+.|...-.+. +..||-||.++..
T Consensus 21 ~~~~~C~I--C~~~~~~---~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVV--CMCDFES---RQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETT--TTEECCB---TCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeE--CCcccCC---CCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34568999 9997543 343332357778999999655544 4799999998764
No 50
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=65.71 E-value=4.2 Score=35.04 Aligned_cols=49 Identities=24% Similarity=0.602 Sum_probs=35.4
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc------CCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT------GGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke------g~~~CP~Ck~~Yk~~ 179 (1122)
...|+| |.+... + -.. ..|+-..|+.|...-.+. +...||-|+.++...
T Consensus 12 ~~~C~I--C~~~~~-~---p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 12 EVTCPI--CLELLT-E---PLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCEETT--TTEECS-S---CCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCCcC--CCcccC-C---eeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 458999 998642 1 112 368888999999755443 367999999998864
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=65.47 E-value=2.4 Score=39.67 Aligned_cols=47 Identities=21% Similarity=0.696 Sum_probs=35.7
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-.|+| |.+..- + -..+ .|+--.|+.|...-.+.+...||.|+.++..
T Consensus 16 ~~C~i--C~~~~~-~---p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGI--CMEILV-E---PVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTT--TCSBCS-S---CEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCcc--CCcccC-c---eeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 47999 998542 1 1222 7888899999977777777899999999863
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.43 E-value=5.5 Score=37.53 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=34.1
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-.|+| |.+... +..+...||--.|+.|...-.+ ..||.|++++..
T Consensus 23 ~~C~I--C~~~~~-----~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSR--CTNILR-----EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSS--SCSCCS-----SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCC--CChHhh-----CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 47999 987542 2344447899999999966554 789999999864
No 53
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=63.82 E-value=3.7 Score=38.91 Aligned_cols=28 Identities=39% Similarity=0.944 Sum_probs=24.1
Q ss_pred ccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 152 KICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 152 ~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
-.|-+|+..-.+++++.||.|+.+..+-
T Consensus 23 vFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 23 VFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp EEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred cHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 5699999777889999999999998764
No 54
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=63.79 E-value=4.1 Score=39.58 Aligned_cols=45 Identities=22% Similarity=0.637 Sum_probs=32.5
Q ss_pred cceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 125 SCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 125 ~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.|+| |.+..- + . +-..||--.|+.|...-.+ ....||-|+.+.+.
T Consensus 55 ~C~i--C~~~~~-~----~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCII--CSEYFI-E----A-VTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp BCTT--TCSBCS-S----E-EEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred CCcc--cCcccC-C----c-eECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 6999 998642 1 1 2226888899999965544 45789999999865
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.49 E-value=7.1 Score=34.57 Aligned_cols=55 Identities=22% Similarity=0.490 Sum_probs=38.1
Q ss_pred CCCCcceeecCCCccccC--------CCCC-cccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSD--------ERGM-DILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~--------~~G~-~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
.....|.| |-+++... +.++ ..+...|+=.-|+.|...=.+. +..||-||+++..
T Consensus 13 ~~~~~C~I--C~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAI--CRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTT--TTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCCcc--cChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 34668999 99987542 1233 3333379999999999554444 4799999998753
No 56
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.02 E-value=9.2 Score=33.38 Aligned_cols=47 Identities=17% Similarity=0.515 Sum_probs=34.5
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
..-.|+| |.+.+. + -.. -.|+-..|+.|...-.+. ...||-|+.+..
T Consensus 14 ~~~~C~I--C~~~~~-~---p~~--~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFI--CRQAFQ-N---PVV--TKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSS--SCSBCC-S---EEE--CTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCcC--CCchhc-C---eeE--ccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3458999 988652 1 112 367888899999766654 689999999986
No 57
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=61.00 E-value=9.4 Score=32.91 Aligned_cols=49 Identities=20% Similarity=0.558 Sum_probs=34.9
Q ss_pred CCcceeecCCCccccCCCCCcccccc-cCCccchhhhHhHhhc-CCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCE-CDFKICRDCYIDAVKT-GGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~Ce-C~f~iCr~Cy~~~~ke-g~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+.+. + ..+ -. |+--.|+.|...-.+. +...||.|++++...
T Consensus 15 ~~~C~I--C~~~~~-~----p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLI--CKDIMT-D----AVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSS--SCCCCT-T----CEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcC--CChHHh-C----CeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 458999 987542 1 222 34 8889999999777664 447999999986543
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=60.95 E-value=2.7 Score=39.56 Aligned_cols=56 Identities=25% Similarity=0.641 Sum_probs=41.8
Q ss_pred CCCCcceeecCCCccccC-CCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSD-ERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~-~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.....|+| |.+.+... +.+...+.+.|+-..|..|.+.-.+.. ..||-|+.++...
T Consensus 70 ~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGG
T ss_pred CCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChh
Confidence 34568999 99875542 345555666999999999997665554 7999999998754
No 59
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=60.73 E-value=5.8 Score=39.44 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=36.1
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
-.|+| |.+..- + ..+ ..|+--.|+.|...-.+.+...||-|+.++...
T Consensus 79 ~~C~I--C~~~~~-~----pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVC--CQELVY-Q----PVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTT--TSSBCS-S----EEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeec--CChhhc-C----CEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47999 988532 1 111 267888899999877777666999999998864
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=59.73 E-value=4.4 Score=38.23 Aligned_cols=48 Identities=21% Similarity=0.636 Sum_probs=36.6
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
-.|+| |.+.+- + . +-..|+-..|+.|...-.+.....||-|+.+....
T Consensus 19 ~~C~I--C~~~~~-~----p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPI--CLMALR-E----A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTT--TCSBCS-S----E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCc--CChhhc-C----e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 48999 997542 1 1 22378999999999887777766999999998753
No 61
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.15 E-value=5.3 Score=37.37 Aligned_cols=49 Identities=31% Similarity=0.765 Sum_probs=37.1
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+.+- + ... ..||-..|+.|...-.+.+...||-|+.++...
T Consensus 23 ~~~C~I--C~~~~~-~----p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQI--CEHILA-D----PVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTT--TCSBCS-S----EEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCC--CCcHhc-C----cEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 347999 988642 1 222 378888999999877777678999999998764
No 62
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=58.40 E-value=6.4 Score=35.74 Aligned_cols=47 Identities=17% Similarity=0.426 Sum_probs=34.1
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
-.|+| |.+.... ..+.-.||-..|+.|...-.+ ....||.|+.+...
T Consensus 23 ~~C~I--C~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGI--CFEYFNI-----AMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTT--TCSBCSS-----EEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCccc--CChhhCC-----cCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 47999 9886431 211126888899999966655 45899999999875
No 63
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.69 E-value=3.5 Score=34.98 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=35.4
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
....|.| |-+.... ..++ |+-..|+.|...-.+ ....||-||.+....+
T Consensus 14 ~~~~C~I--C~~~~~~-----~~~~--CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCI--CMDGRAD-----LILP--CAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSS--SCCSCCS-----EEET--TTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCee--CCcCccC-----cccC--CCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 3568999 9986421 4444 666689999965443 6799999999987543
No 64
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=57.39 E-value=9.9 Score=31.83 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=34.6
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
....|+| |.+... +....+ .|+-..|+.|...-.+. +..||-|+.+...
T Consensus 4 ~~~~C~I--C~~~~~---~~~~~~--~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPI--CLEDPS---NYSMAL--PCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSS--CCSCCC---SCEEET--TTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCee--CCcccc---CCcEec--CCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 3568999 999743 111334 46777899999665544 4799999999874
No 65
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=53.46 E-value=8.3 Score=35.61 Aligned_cols=49 Identities=22% Similarity=0.551 Sum_probs=35.7
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+..- +..+.-.||-..|+.|...-.+.. ..||.|+.+....
T Consensus 15 ~~~C~I--C~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVL--CGGYFI-----DATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTT--TSSBCS-----SEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred cCCCcc--CChHHh-----CcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 347999 988642 122222788888999997666554 8999999998764
No 66
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=52.92 E-value=7.5 Score=34.67 Aligned_cols=48 Identities=23% Similarity=0.590 Sum_probs=34.0
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc-CCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT-GGGICPGCKEPYK 177 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke-g~~~CP~Ck~~Yk 177 (1122)
.-.|+| |.+..- + -..++ .|+--.|+.|.+.-.+. +...||.|++++.
T Consensus 13 ~~~C~I--C~~~~~-~---p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLI--CKDIMT-D---AVVIP-CCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETT--TTEECS-S---CEECT-TTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCC--CChhhc-C---ceECC-CCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999 997432 2 11222 28999999999766543 4579999999974
No 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=52.76 E-value=8.8 Score=44.18 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=34.1
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
...|.| |-+..- .-..+| ||=..|..|...-.+.....||-||.+...
T Consensus 332 ~~~C~I--Cle~~~----~pv~lp--CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKI--CAENDK----DVKIEP--CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTT--TSSSBC----CEEEET--TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCc--cCcCCC----CeEEeC--CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 368999 988641 123444 555559999965555577899999998875
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=51.79 E-value=6.8 Score=39.11 Aligned_cols=48 Identities=21% Similarity=0.636 Sum_probs=37.8
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
-.|+| |.+.+- + + +-+.||--.|+.|...-.+.+...||.|++++...
T Consensus 19 ~~C~I--C~~~~~-~----p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPI--CLMALR-E----A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTT--TCSBCS-S----E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCC--CChhhc-C----c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 37999 998532 2 2 33689999999999888777767999999998764
No 69
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=50.48 E-value=30 Score=39.65 Aligned_cols=52 Identities=17% Similarity=0.008 Sum_probs=37.0
Q ss_pred CchhhhHHHHHhccccCCCCEEEEecCCCCCCChHHHHHHHHHhhccCCCcEEE
Q 001213 585 KKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCY 638 (1122)
Q Consensus 585 ~KAGALNallRvSavltngpfIlnlDcD~y~nnp~~Lr~amcff~D~~g~~vaf 638 (1122)
.|++|||+.++......+|++|+.+|||-.-.+|+.+.+.+..+.+ |-++.+
T Consensus 75 GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~--g~D~V~ 126 (397)
T 2bo4_A 75 GKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF--GYGLVR 126 (397)
T ss_dssp SHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT--TCSEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHc--CCCEEE
Confidence 4999999998321003689999999999852368999988776643 344443
No 70
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=50.22 E-value=6.3 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.454 Sum_probs=33.0
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
....|.| |-++. ..-.|+.-.||=. .|..|...-. ..+..||-|+.+.+
T Consensus 7 ~~~~C~I--C~~~~----~~~~~~~~pCgH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVI--CQGRP----KNGCIVHGKTGHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTT--TSSSC----SCEEEEETTEEEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CcCCCCc--CCCCC----CCEEEECCCCCChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 3457999 99852 2335661134555 6999996544 45689999999875
No 71
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=48.15 E-value=7.8 Score=32.79 Aligned_cols=46 Identities=26% Similarity=0.584 Sum_probs=32.0
Q ss_pred CCcceeecCCCccccCCCCCccc--ccccCCc-cchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDIL--PCECDFK-ICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~--~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
...|.| |.|. +....++ || |=. .|..|...-. +.++.||-|+.+.+
T Consensus 7 ~~~C~I--C~~~----~~~~~~~~~pC--gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSL--CEKR----PRDGNIIHGRT--GHLVTCFHCARRLK-KAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTT--TSSS----BSCEEEEETTE--EEEEECHHHHHHHH-HTTCBCTTTCCBCC
T ss_pred CCCCcc--cCCc----CCCeEEEecCC--CCHhHHHHHHHHHH-HhCCcCCCcCchhh
Confidence 357999 9984 2233455 66 443 7999996544 44589999999875
No 72
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=48.14 E-value=16 Score=34.45 Aligned_cols=53 Identities=15% Similarity=0.360 Sum_probs=36.6
Q ss_pred CCCcceeecCCCccccC----------CCCC--cccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSD----------ERGM--DILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~----------~~G~--~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
....|.| |-+.+... ..|+ ..+.-.|+-.-++.|...-.+ .+..||-|+.+++
T Consensus 36 ~~d~CaI--C~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAI--CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSS--SCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCcc--CChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 4568999 99886643 1222 233337999999999854444 4789999999864
No 73
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=46.78 E-value=11 Score=35.36 Aligned_cols=56 Identities=25% Similarity=0.633 Sum_probs=41.1
Q ss_pred CCCcceeecCCCccccC-CCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSD-ERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTD 180 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~-~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~d 180 (1122)
+.-.|+| |-+..... .+|+..+.-.||-..|+.|...-.+.. ..||-|++++...+
T Consensus 6 ~~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTT--TCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTC
T ss_pred CCCCCcc--cChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccc
Confidence 4558999 99975432 134544555899999999996665554 69999999998654
No 74
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.66 E-value=17 Score=31.56 Aligned_cols=42 Identities=21% Similarity=0.567 Sum_probs=29.9
Q ss_pred CcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
..|.| |-+.. ..-.++| |+-. .|+.|... ...||-||++...
T Consensus 26 ~~C~I--C~~~~----~~~~~~p--CgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKI--CMDRN----IAIVFVP--CGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSS--SCSSC----CCBCCSS--SCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCc--CCCCC----CCEEEec--CCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 37999 98852 2234555 5666 79999842 3789999998865
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.23 E-value=18 Score=29.86 Aligned_cols=43 Identities=23% Similarity=0.556 Sum_probs=31.1
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc--CCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT--GGGICPGC 172 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke--g~~~CP~C 172 (1122)
....|+| |.+.... -..+ .|+-..|+.|.+.-.+. +...||-|
T Consensus 19 ~~~~C~I--C~~~~~~----p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPI--CLDILQK----PVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTT--TCSBCSS----CEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCc--CCchhCC----eEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3558999 9986431 1222 78888999999877664 56789988
No 76
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.94 E-value=38 Score=27.10 Aligned_cols=43 Identities=30% Similarity=0.624 Sum_probs=30.6
Q ss_pred CCCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhc--CCCCCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKT--GGGICPGC 172 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~ke--g~~~CP~C 172 (1122)
....|+| |.+.... -..+ .|+-..|+.|...-.++ ....||-|
T Consensus 14 ~~~~C~I--C~~~~~~----p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSV--CLEYLKE----PVII--ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSS--SCCBCSS----CCCC--SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCcc--CCcccCc----cEeC--CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3568999 9987532 1233 57777899999766544 67899987
No 77
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.60 E-value=16 Score=33.04 Aligned_cols=39 Identities=23% Similarity=0.611 Sum_probs=31.7
Q ss_pred CCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhH
Q 001213 119 AGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDA 161 (1122)
Q Consensus 119 ~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~ 161 (1122)
.+-+...|.. |...+|+= ++--++| .|...||+.|-.+.
T Consensus 21 ~~~~~r~Car--C~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 21 QHYSDRTCAR--CQESLGRL--SPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp TTCCCCBCSS--SCCBCSSS--CTTTSEETTTTEECCTTSEEEC
T ss_pred cCCCccchhh--hCcccccc--ccCCCcCcccChhhcccccccC
Confidence 3556679999 99999875 5556799 99999999998554
No 78
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=40.55 E-value=9.9 Score=43.01 Aligned_cols=43 Identities=23% Similarity=0.667 Sum_probs=30.7
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
...|.| |-+..- .-.++ .||-- .|+.|...- ..||-||++.+.
T Consensus 295 ~~~C~I--C~~~~~----~~v~l--pCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKV--CMDKEV----SVVFI--PCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTT--TSSSBC----CEEEE--TTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCc--cCCcCC----ceEEc--CCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999 998531 22345 46666 899999533 789999998763
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=39.17 E-value=21 Score=38.23 Aligned_cols=48 Identities=17% Similarity=0.618 Sum_probs=38.6
Q ss_pred CCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhh-cCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVK-TGGGICPGCKEPYKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~k-eg~~~CP~Ck~~Yk~ 178 (1122)
-..|.| |.+-|..+ .-| .|+-..=+.|+..-.+ .++..||.|+++-..
T Consensus 180 i~~C~i--C~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNI--CHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTT--TCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcc--hhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 568999 99988863 789 7999999999966544 456799999997654
No 80
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.89 E-value=29 Score=28.34 Aligned_cols=45 Identities=29% Similarity=0.712 Sum_probs=32.0
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
.-.|+| |.+..-. -..++ |+--.|+.|... ....||-|+.+....
T Consensus 6 ~~~C~I--C~~~~~~----p~~l~--CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQ--CQAEAKC----PKLLP--CLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSS--SCSSCBC----CSCST--TSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceE--eCCccCC----eEEcC--CCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 457999 9885431 13444 677779999844 568999999988754
No 81
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.05 E-value=14 Score=35.16 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=17.0
Q ss_pred ccc-ccCCccchhhhHhHhhcCCCCCCCCCCC
Q 001213 145 LPC-ECDFKICRDCYIDAVKTGGGICPGCKEP 175 (1122)
Q Consensus 145 ~~C-eC~f~iCr~Cy~~~~keg~~~CP~Ck~~ 175 (1122)
.-| +|||.. + ........||.||..
T Consensus 68 ~~C~~CG~~F---~---~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVF---K---AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBC---C---CCSSCCSSCSSSCCC
T ss_pred cChhhCcCee---c---ccCCCCCCCcCCCCC
Confidence 358 899886 1 223444899999964
No 82
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.09 E-value=46 Score=29.56 Aligned_cols=49 Identities=18% Similarity=0.649 Sum_probs=35.4
Q ss_pred CCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhh-cCCCCCCCCCCCCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVK-TGGGICPGCKEPYKNT 179 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~k-eg~~~CP~Ck~~Yk~~ 179 (1122)
-..|.| |-+.|+. | .-| .|+-..=..|...-.+ .++..||.|+++....
T Consensus 15 i~~C~I--C~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNI--CHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSS--SCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcc--hhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 358999 9999874 3 356 7877777888854433 3458999999887643
No 83
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.82 E-value=22 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.633 Sum_probs=30.0
Q ss_pred CcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
..|.| |.+..- .-.++| |+=. .|+.|...- ..||-||++...
T Consensus 25 ~~C~i--C~~~~~----~~~~~p--CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKI--CMDRNI----AIVFVP--CGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTT--TSSSBC----CEEEET--TCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCC--CCCCCC----CEEEcC--CCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 37999 998521 223554 6667 899998433 899999998763
No 84
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=31.69 E-value=7.3 Score=38.34 Aligned_cols=46 Identities=20% Similarity=0.528 Sum_probs=35.7
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
-.|+| |.+-+- + . +-..||=.-|+.|...-.+.+...||-|+.+..
T Consensus 32 ~~C~I--C~~~~~-~----p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSA--CRNVLR-R----P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTT--TCSBCS-S----E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCC--CChhhc-C----c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 37999 988532 1 2 235899999999998888878789999999754
No 85
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.68 E-value=37 Score=29.47 Aligned_cols=47 Identities=32% Similarity=0.672 Sum_probs=36.1
Q ss_pred CCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhH---hhcCCCCCCCCCCC
Q 001213 120 GAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDA---VKTGGGICPGCKEP 175 (1122)
Q Consensus 120 ~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~---~keg~~~CP~Ck~~ 175 (1122)
...+..|.| |++ |.+.+-| .|.-..=..|+... +-+|.=.||.|+..
T Consensus 9 ~~~~~~C~v--C~~-------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGV--CGD-------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTT--TSC-------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCC--CCC-------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345678999 985 4568899 89999999998543 34677899999754
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.13 E-value=6.7 Score=39.61 Aligned_cols=48 Identities=21% Similarity=0.498 Sum_probs=36.1
Q ss_pred CCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhhcCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVKTGGGICPGC 172 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~keg~~~CP~C 172 (1122)
.+...|.+ |....+.- ++.-..| .|...||+.|-.+-++++.=.|--|
T Consensus 66 ~~~~~C~~--C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC 114 (153)
T 2zet_C 66 LNETHCAR--CLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPC 114 (153)
T ss_dssp GGGTBCTT--TCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHH
T ss_pred CCCccchh--hcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHH
Confidence 35779999 99997764 4446899 9999999999976655555555444
No 87
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=29.77 E-value=14 Score=35.72 Aligned_cols=54 Identities=17% Similarity=0.369 Sum_probs=1.5
Q ss_pred CCCCcceeecCCCccccCC----------CCCc--ccccccCCccchhhhHhHhhcCCCCCCCCCCCCC
Q 001213 121 AKGSSCSVLGCDANVMSDE----------RGMD--ILPCECDFKICRDCYIDAVKTGGGICPGCKEPYK 177 (1122)
Q Consensus 121 ~~~~~C~i~~Cg~~v~~~~----------~G~~--f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk 177 (1122)
.....|.| |-++++... .|++ .+...|+-.-|+.|...=.+. +..||-|+.+++
T Consensus 46 ~~~d~CaI--Cl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAI--CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CCC------------------------------------------------------------------
T ss_pred CCCCcCeE--CChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 44578999 999876421 1332 333478888999998444443 689999999864
No 88
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.36 E-value=22 Score=35.02 Aligned_cols=36 Identities=19% Similarity=0.697 Sum_probs=28.6
Q ss_pred CCCCCcceeecCCCcccc-CCCCCccccc-ccCCccchhhhHh
Q 001213 120 GAKGSSCSVLGCDANVMS-DERGMDILPC-ECDFKICRDCYID 160 (1122)
Q Consensus 120 ~~~~~~C~i~~Cg~~v~~-~~~G~~f~~C-eC~f~iCr~Cy~~ 160 (1122)
+.+...|.+ |....|. +..| ..| .|...||+.|-.+
T Consensus 52 ~~~~~~C~~--C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 52 GDGVNRCIL--CGEQLGMLGSAS---VVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SCSSSBCSS--SCCBCSTTSCCE---EECTTTCCEEETTSEEE
T ss_pred cCCCccccc--cCCCcccccCCC---CCCCCCCcccccccCCc
Confidence 456779999 9999864 3344 789 9999999999844
No 89
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.12 E-value=27 Score=31.41 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=34.2
Q ss_pred CCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhHhh----cCC---CCCCC--CCCCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDAVK----TGG---GICPG--CKEPY 176 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~k----eg~---~~CP~--Ck~~Y 176 (1122)
...|.| |-+.+. +.+++.- .|+=.-|+.|...-.+ +|. -.||. |+..+
T Consensus 5 ~~~C~I--C~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKL--CLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSS--SCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcc--cCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 457999 998643 3455544 5888899999865533 553 47999 99884
No 90
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.09 E-value=28 Score=31.57 Aligned_cols=49 Identities=16% Similarity=0.473 Sum_probs=34.5
Q ss_pred CCcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcC-----CCCCCC--CCCC-CCC
Q 001213 123 GSSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTG-----GGICPG--CKEP-YKN 178 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg-----~~~CP~--Ck~~-Yk~ 178 (1122)
.-.|+| |.+ +|.| +.+.-.||.--||.|-+.-.+++ ...||. |+.. ...
T Consensus 7 ~~~CPI--~~~-~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPI--TKE-EMKK----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTT--TCS-BCSS----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcC--cCc-hhcC----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 357999 986 4543 33333699999999987776543 468999 8876 543
No 91
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=25.37 E-value=17 Score=26.57 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=8.3
Q ss_pred CCccchhhh
Q 001213 150 DFKICRDCY 158 (1122)
Q Consensus 150 ~f~iCr~Cy 158 (1122)
.|||||+|+
T Consensus 3 ~~~iC~~CC 11 (26)
T 1m4f_A 3 HFPICIFCC 11 (26)
T ss_dssp SSCCCEEEE
T ss_pred cCCccceec
Confidence 599999999
No 92
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=24.54 E-value=27 Score=29.60 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=35.1
Q ss_pred CcceeecCCCccccCCCCCcccccccCCccchhhhHhHhhcCCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNT 179 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~keg~~~CP~Ck~~Yk~~ 179 (1122)
-.|+| |++ +|.| ..+.-.||+-.||.|-+.-.++. +.||-++++.+..
T Consensus 4 ~~CpI--s~~-~m~d----PV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAI--SGK-VPRR----PVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIE 51 (61)
T ss_dssp CCCTT--TCS-CCSS----EEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGG
T ss_pred EEecC--CCC-CCCC----CEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChh
Confidence 47999 776 4543 32222799999999998887654 6799999988743
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.50 E-value=23 Score=32.35 Aligned_cols=59 Identities=22% Similarity=0.525 Sum_probs=41.6
Q ss_pred CCccCCCCCCcceeecCCCccccCCCCCccccc-ccCCccchhhhHhH-hhcCCCCCCCCCCCCC
Q 001213 115 HPQMAGAKGSSCSVLGCDANVMSDERGMDILPC-ECDFKICRDCYIDA-VKTGGGICPGCKEPYK 177 (1122)
Q Consensus 115 ~~~~~~~~~~~C~i~~Cg~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~-~keg~~~CP~Ck~~Yk 177 (1122)
.++....+...|.| |++. -..+++.++-| .|.-..=..||.-. +-+|.=.||.|...-.
T Consensus 17 ~~~~~~~~~~~C~v--C~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 17 SSQSLIDEDAVCSI--CMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp TTTCCCCCCCCCSS--CCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCCCCcCCc--CCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34444556789999 9873 12356689999 89888788999643 4578888999975443
No 94
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.96 E-value=18 Score=37.92 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=20.9
Q ss_pred CCcceeecCCCccccC----CCCCcccccccCCccchhhhHh
Q 001213 123 GSSCSVLGCDANVMSD----ERGMDILPCECDFKICRDCYID 160 (1122)
Q Consensus 123 ~~~C~i~~Cg~~v~~~----~~G~~f~~CeC~f~iCr~Cy~~ 160 (1122)
.-.|++ |||.|+-. .+|. .+|++|++.
T Consensus 172 ~~~C~~--CGE~~~~~~~~~~~g~---------~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDV--CGEYTYEADAKLLNGK---------PVCKPDYYG 202 (204)
T ss_dssp EEECTT--TCCEEEGGGCEEETTE---------EECHHHHHC
T ss_pred ceECCC--CCCchhhcceeeeCCc---------EEChhhhcc
Confidence 448999 99999864 3565 799999953
No 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.73 E-value=40 Score=41.99 Aligned_cols=53 Identities=19% Similarity=0.536 Sum_probs=35.9
Q ss_pred CCCcceeecCCCccccCCCC----Cccccc-ccC--------------------CccchhhhHhHhh-c------CCCCC
Q 001213 122 KGSSCSVLGCDANVMSDERG----MDILPC-ECD--------------------FKICRDCYIDAVK-T------GGGIC 169 (1122)
Q Consensus 122 ~~~~C~i~~Cg~~v~~~~~G----~~f~~C-eC~--------------------f~iCr~Cy~~~~k-e------g~~~C 169 (1122)
+-.+|.= |-.++. |... -+|+-| .|| |+.|..|-..-.. . ---+|
T Consensus 110 D~a~C~~--Cl~e~~-dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 110 DMGVCED--CLRELK-DPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CBCCCHH--HHHHHT-CTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred CccccHH--HHHHhc-CCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 3457777 877764 3322 259999 999 9999999743222 1 22479
Q ss_pred CCCCCCCC
Q 001213 170 PGCKEPYK 177 (1122)
Q Consensus 170 P~Ck~~Yk 177 (1122)
|.|+=.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99998774
No 96
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=20.60 E-value=38 Score=29.89 Aligned_cols=42 Identities=24% Similarity=0.634 Sum_probs=29.5
Q ss_pred CcceeecCCCccccCCCCCcccccccCCc-cchhhhHhHhhcCCCCCCCCCCCCCC
Q 001213 124 SSCSVLGCDANVMSDERGMDILPCECDFK-ICRDCYIDAVKTGGGICPGCKEPYKN 178 (1122)
Q Consensus 124 ~~C~i~~Cg~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~keg~~~CP~Ck~~Yk~ 178 (1122)
..|.| |.+.. ..-.|+| ||-. .|..|...- ..||-|+.+...
T Consensus 19 ~~C~I--C~~~~----~~~v~~p--CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMV--CCEEE----INSTFCP--CGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTT--TSSSB----CCEEEET--TCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CEeEE--eCccc----CcEEEEC--CCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 47999 98852 2334665 5545 799998532 599999998874
Done!