Query 001214
Match_columns 1122
No_of_seqs 536 out of 2944
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 18:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-138 3E-143 1262.2 73.2 1009 1-1098 362-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 5E-107 1E-111 997.1 36.3 416 1-416 396-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 1E-103 3E-108 940.9 40.3 457 1-463 301-758 (862)
4 KOG0161 Myosin class II heavy 100.0 7E-101 1E-105 979.8 60.1 659 1-688 382-1120(1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 1.1E-98 2E-103 913.2 34.7 374 1-374 301-674 (674)
6 KOG0164 Myosin class I heavy c 100.0 3E-97 7E-102 833.6 32.2 434 1-444 304-755 (1001)
7 cd01380 MYSc_type_V Myosin mot 100.0 2.2E-95 5E-100 889.9 34.0 369 1-370 299-691 (691)
8 cd01378 MYSc_type_I Myosin mot 100.0 3.4E-95 7E-100 886.0 34.2 369 1-370 295-674 (674)
9 cd01381 MYSc_type_VII Myosin m 100.0 2.6E-95 6E-100 884.9 33.0 370 1-370 295-671 (671)
10 cd01377 MYSc_type_II Myosin mo 100.0 3.6E-95 8E-100 888.2 34.2 370 1-370 308-693 (693)
11 cd01387 MYSc_type_XV Myosin mo 100.0 9E-95 2E-99 881.1 34.4 369 1-370 296-677 (677)
12 cd01383 MYSc_type_VIII Myosin 100.0 1.1E-94 2.4E-99 878.6 34.0 366 1-370 298-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 6E-94 1.3E-98 875.8 34.4 368 1-371 307-689 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 9.8E-94 2.1E-98 877.0 33.9 367 1-369 327-715 (717)
15 cd01379 MYSc_type_III Myosin m 100.0 3.4E-93 7.4E-98 862.5 34.1 347 1-370 302-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 1.5E-92 3.2E-97 867.6 34.5 371 1-371 303-677 (677)
17 cd00124 MYSc Myosin motor doma 100.0 1.1E-90 2.4E-95 854.1 34.3 370 1-370 296-679 (679)
18 KOG0162 Myosin class I heavy c 100.0 1.8E-91 3.8E-96 786.4 24.3 400 1-404 312-725 (1106)
19 cd01386 MYSc_type_XVIII Myosin 100.0 2.2E-89 4.7E-94 839.3 32.2 370 1-370 294-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 3.8E-85 8.3E-90 735.4 53.0 435 1-447 381-837 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 1.6E-85 3.4E-90 819.6 29.3 359 1-359 297-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2.3E-52 4.9E-57 513.2 14.7 510 2-513 360-1008(1062)
23 KOG1892 Actin filament-binding 100.0 1.4E-32 3.1E-37 317.1 22.3 309 743-1121 540-863 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 7.1E-29 1.5E-33 234.6 5.6 105 974-1081 1-105 (105)
25 KOG0161 Myosin class II heavy 99.0 1.4E-06 3E-11 115.6 42.4 369 90-490 413-818 (1930)
26 KOG0160 Myosin class V heavy c 98.3 2.1E-06 4.5E-11 105.8 10.8 85 424-511 674-758 (862)
27 KOG0520 Uncharacterized conser 98.3 1.1E-06 2.5E-11 108.0 6.8 120 372-491 807-934 (975)
28 COG5022 Myosin heavy chain [Cy 98.1 0.0009 1.9E-08 85.6 26.4 88 424-511 746-834 (1463)
29 KOG4229 Myosin VII, myosin IXB 98.0 3.4E-06 7.5E-11 106.6 3.2 214 244-465 791-1008(1062)
30 KOG0971 Microtubule-associated 97.9 0.014 3E-07 71.0 31.8 64 521-584 290-356 (1243)
31 KOG0520 Uncharacterized conser 97.8 3.8E-05 8.2E-10 95.0 7.1 116 399-518 811-938 (975)
32 KOG1029 Endocytic adaptor prot 97.6 0.0096 2.1E-07 71.1 23.2 67 614-680 435-508 (1118)
33 PF09726 Macoilin: Transmembra 97.5 0.026 5.7E-07 70.4 27.1 107 565-686 543-650 (697)
34 KOG1029 Endocytic adaptor prot 97.4 0.17 3.8E-06 60.9 30.4 25 994-1018 1008-1032(1118)
35 PF12718 Tropomyosin_1: Tropom 97.3 0.039 8.5E-07 55.1 20.8 50 524-584 10-59 (143)
36 KOG0250 DNA repair protein RAD 97.3 0.8 1.7E-05 58.3 35.9 76 611-686 389-464 (1074)
37 KOG0996 Structural maintenance 97.3 0.54 1.2E-05 59.8 34.0 48 1029-1079 1169-1219(1293)
38 PRK11637 AmiB activator; Provi 97.3 0.084 1.8E-06 63.2 26.7 32 653-684 221-252 (428)
39 TIGR02169 SMC_prok_A chromosom 97.2 0.67 1.4E-05 63.0 37.9 16 1084-1099 1108-1123(1164)
40 PF09726 Macoilin: Transmembra 97.1 0.074 1.6E-06 66.5 24.5 34 609-642 545-578 (697)
41 TIGR02169 SMC_prok_A chromosom 97.1 0.78 1.7E-05 62.4 36.9 7 338-344 123-129 (1164)
42 COG1579 Zn-ribbon protein, pos 97.0 0.25 5.4E-06 53.2 23.7 54 607-660 87-140 (239)
43 KOG1853 LIS1-interacting prote 97.0 0.28 6E-06 51.7 22.9 77 611-687 100-179 (333)
44 PRK04863 mukB cell division pr 97.0 0.8 1.7E-05 62.2 33.4 31 656-686 447-477 (1486)
45 PF00612 IQ: IQ calmodulin-bin 96.9 0.00085 1.8E-08 43.6 2.5 20 424-443 2-21 (21)
46 TIGR02168 SMC_prok_B chromosom 96.9 0.85 1.8E-05 62.1 33.9 35 116-150 131-165 (1179)
47 KOG0996 Structural maintenance 96.8 1.5 3.3E-05 56.0 31.8 14 334-347 208-221 (1293)
48 KOG0971 Microtubule-associated 96.8 2 4.3E-05 53.2 31.3 43 647-689 507-549 (1243)
49 TIGR02168 SMC_prok_B chromosom 96.8 2.4 5.3E-05 57.7 37.5 17 668-684 436-452 (1179)
50 PRK11637 AmiB activator; Provi 96.8 0.49 1.1E-05 56.7 26.9 33 647-679 222-254 (428)
51 KOG0164 Myosin class I heavy c 96.7 0.01 2.2E-07 70.5 11.1 82 422-513 695-786 (1001)
52 KOG0933 Structural maintenance 96.7 0.57 1.2E-05 58.6 26.0 48 91-150 121-169 (1174)
53 COG1196 Smc Chromosome segrega 96.6 2.2 4.9E-05 57.7 33.9 15 293-307 501-515 (1163)
54 PF00261 Tropomyosin: Tropomyo 96.6 0.78 1.7E-05 50.2 24.5 34 649-682 181-214 (237)
55 KOG0933 Structural maintenance 96.6 2.7 5.9E-05 53.0 30.7 23 337-359 601-630 (1174)
56 PF00261 Tropomyosin: Tropomyo 96.5 0.11 2.4E-06 56.9 17.2 21 560-580 36-56 (237)
57 KOG2128 Ras GTPase-activating 96.5 0.034 7.5E-07 71.4 14.6 139 380-518 482-646 (1401)
58 PF07888 CALCOCO1: Calcium bin 96.4 0.45 9.7E-06 57.0 22.7 20 526-545 162-181 (546)
59 COG1196 Smc Chromosome segrega 96.4 5.1 0.00011 54.3 35.8 23 1078-1101 1095-1117(1163)
60 PRK02224 chromosome segregatio 96.4 0.23 5.1E-06 65.3 23.0 13 532-544 479-491 (880)
61 PRK02224 chromosome segregatio 96.4 6.1 0.00013 52.1 35.7 13 353-365 130-142 (880)
62 PF07888 CALCOCO1: Calcium bin 96.3 0.68 1.5E-05 55.5 23.6 17 525-541 154-170 (546)
63 PRK09039 hypothetical protein; 96.3 0.31 6.8E-06 56.2 20.4 30 523-552 48-77 (343)
64 COG4942 Membrane-bound metallo 96.3 1.4 3E-05 51.1 24.8 33 649-681 215-247 (420)
65 KOG0163 Myosin class VI heavy 96.3 3.3 7.1E-05 50.4 28.1 59 427-494 778-836 (1259)
66 PF08317 Spc7: Spc7 kinetochor 96.2 1.5 3.3E-05 50.3 24.9 80 607-686 207-290 (325)
67 PF00612 IQ: IQ calmodulin-bin 96.1 0.0081 1.8E-07 39.0 3.4 19 472-490 2-20 (21)
68 PHA02562 46 endonuclease subun 96.0 0.76 1.6E-05 57.2 23.6 27 608-634 298-324 (562)
69 KOG4643 Uncharacterized coiled 96.0 2.8 6.1E-05 52.7 26.6 39 649-687 299-337 (1195)
70 PRK04863 mukB cell division pr 96.0 8.7 0.00019 52.7 34.0 36 649-684 447-482 (1486)
71 KOG0250 DNA repair protein RAD 96.0 7.8 0.00017 49.8 36.0 11 291-301 37-47 (1074)
72 PF12718 Tropomyosin_1: Tropom 96.0 1.3 2.8E-05 44.4 20.1 30 613-642 77-106 (143)
73 PF15070 GOLGA2L5: Putative go 95.9 1.2 2.6E-05 55.1 23.9 78 609-686 153-230 (617)
74 PF14662 CCDC155: Coiled-coil 95.9 2.5 5.5E-05 43.6 23.4 28 654-681 161-188 (193)
75 PRK03918 chromosome segregatio 95.8 0.88 1.9E-05 59.9 23.9 34 651-684 666-699 (880)
76 KOG0980 Actin-binding protein 95.7 2.4 5.2E-05 52.7 24.6 17 248-264 201-217 (980)
77 PF14662 CCDC155: Coiled-coil 95.7 3.1 6.6E-05 43.0 22.3 34 655-688 155-188 (193)
78 PF15619 Lebercilin: Ciliary p 95.7 3.6 7.7E-05 43.4 23.6 28 611-638 120-147 (194)
79 PF12128 DUF3584: Protein of u 95.6 15 0.00032 50.1 36.4 27 1071-1098 1054-1081(1201)
80 PF15066 CAGE1: Cancer-associa 95.6 2.9 6.3E-05 48.3 23.1 21 666-686 493-513 (527)
81 KOG0976 Rho/Rac1-interacting s 95.5 3.7 8E-05 50.2 24.5 53 634-686 253-305 (1265)
82 smart00015 IQ Short calmodulin 95.5 0.0099 2.2E-07 40.8 2.1 21 423-443 3-23 (26)
83 COG3883 Uncharacterized protei 95.5 3.9 8.4E-05 44.8 22.7 21 561-581 81-101 (265)
84 PRK09039 hypothetical protein; 95.5 1.4 2.9E-05 51.0 20.8 14 532-545 78-91 (343)
85 PF15397 DUF4618: Domain of un 95.4 5.2 0.00011 43.7 24.3 32 657-688 192-223 (258)
86 KOG0977 Nuclear envelope prote 95.4 1.3 2.8E-05 53.2 20.5 77 610-686 107-183 (546)
87 PHA02562 46 endonuclease subun 95.2 3.7 8E-05 51.1 25.5 18 620-637 303-320 (562)
88 PRK03918 chromosome segregatio 95.2 1.6 3.5E-05 57.5 23.2 75 611-685 628-707 (880)
89 TIGR00606 rad50 rad50. This fa 95.2 6.3 0.00014 54.2 29.3 23 521-543 843-865 (1311)
90 KOG4673 Transcription factor T 95.2 11 0.00023 45.8 28.4 13 66-78 9-21 (961)
91 KOG4643 Uncharacterized coiled 95.1 3.7 8.1E-05 51.7 23.5 16 73-88 30-45 (1195)
92 KOG0018 Structural maintenance 95.1 12 0.00026 47.9 28.1 32 425-456 212-243 (1141)
93 PF04849 HAP1_N: HAP1 N-termin 95.1 7.4 0.00016 43.5 23.7 78 609-686 220-304 (306)
94 PF10473 CENP-F_leu_zip: Leuci 95.0 3.8 8.2E-05 40.6 19.1 21 616-636 80-100 (140)
95 PF12128 DUF3584: Protein of u 95.0 22 0.00048 48.5 37.7 22 1078-1101 1154-1175(1201)
96 KOG0977 Nuclear envelope prote 94.9 7 0.00015 47.2 24.7 71 615-685 295-369 (546)
97 PF09755 DUF2046: Uncharacteri 94.9 6.3 0.00014 44.0 22.4 13 673-685 186-198 (310)
98 PF04091 Sec15: Exocyst comple 94.9 0.2 4.3E-06 57.0 11.5 133 943-1076 176-311 (311)
99 PF04849 HAP1_N: HAP1 N-termin 94.8 1.4 3E-05 49.1 17.3 67 612-678 237-303 (306)
100 KOG0994 Extracellular matrix g 94.8 18 0.00039 46.5 29.5 29 655-683 1714-1742(1758)
101 smart00787 Spc7 Spc7 kinetocho 94.8 6.1 0.00013 44.9 22.8 78 610-687 205-286 (312)
102 KOG0982 Centrosomal protein Nu 94.8 10 0.00022 43.6 24.8 15 674-688 405-419 (502)
103 KOG0612 Rho-associated, coiled 94.7 17 0.00038 47.2 28.2 73 612-684 619-693 (1317)
104 KOG1003 Actin filament-coating 94.6 6.3 0.00014 40.7 21.8 70 611-680 111-187 (205)
105 KOG4360 Uncharacterized coiled 94.6 1.1 2.4E-05 52.1 16.3 77 610-686 227-303 (596)
106 PF09789 DUF2353: Uncharacteri 94.6 10 0.00022 42.9 25.2 128 558-687 77-218 (319)
107 smart00015 IQ Short calmodulin 94.6 0.017 3.6E-07 39.7 1.1 20 375-394 3-22 (26)
108 PF08317 Spc7: Spc7 kinetochor 94.5 4.7 0.0001 46.4 21.7 13 666-678 277-289 (325)
109 PF10174 Cast: RIM-binding pro 94.5 4.9 0.00011 51.0 23.2 40 557-596 333-372 (775)
110 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 2.7 5.9E-05 41.5 16.9 29 659-687 99-127 (132)
111 KOG0980 Actin-binding protein 94.4 19 0.00042 45.2 28.0 11 1060-1070 934-944 (980)
112 KOG0999 Microtubule-associated 94.3 6.2 0.00013 46.5 21.3 22 666-687 195-216 (772)
113 KOG1103 Predicted coiled-coil 94.2 11 0.00024 41.8 22.3 52 635-686 243-294 (561)
114 TIGR03185 DNA_S_dndD DNA sulfu 94.2 13 0.00027 47.3 26.6 37 647-683 431-467 (650)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.1 5.8 0.00012 39.2 18.5 27 649-675 103-129 (132)
116 KOG0995 Centromere-associated 94.1 17 0.00037 43.6 27.5 18 520-537 307-324 (581)
117 PF10481 CENP-F_N: Cenp-F N-te 94.0 1.8 3.8E-05 46.7 15.2 72 618-689 62-133 (307)
118 PF05483 SCP-1: Synaptonemal c 94.0 12 0.00025 45.7 23.5 43 647-689 583-625 (786)
119 COG4372 Uncharacterized protei 94.0 14 0.00029 42.0 24.7 13 669-681 263-275 (499)
120 smart00787 Spc7 Spc7 kinetocho 94.0 14 0.0003 42.1 24.0 78 609-686 179-260 (312)
121 PTZ00014 myosin-A; Provisional 93.9 0.071 1.5E-06 68.0 5.6 39 425-463 779-817 (821)
122 COG3883 Uncharacterized protei 93.7 13 0.00029 40.8 22.4 30 557-586 70-99 (265)
123 PF05667 DUF812: Protein of un 93.6 6.3 0.00014 48.8 21.4 15 188-204 79-93 (594)
124 KOG0964 Structural maintenance 93.5 15 0.00033 46.5 23.9 65 623-687 432-496 (1200)
125 KOG0612 Rho-associated, coiled 93.2 12 0.00026 48.6 23.0 37 182-218 212-253 (1317)
126 KOG0963 Transcription factor/C 93.2 13 0.00028 45.1 22.1 28 660-687 237-264 (629)
127 KOG0249 LAR-interacting protei 93.1 8.2 0.00018 47.0 20.2 20 995-1022 756-775 (916)
128 PF10481 CENP-F_N: Cenp-F N-te 93.1 7.7 0.00017 42.0 18.0 28 660-687 164-191 (307)
129 KOG2128 Ras GTPase-activating 93.1 1.5 3.3E-05 57.2 15.2 164 379-545 511-704 (1401)
130 PF13851 GAS: Growth-arrest sp 93.1 14 0.00031 39.3 24.1 74 612-685 96-170 (201)
131 PF07111 HCR: Alpha helical co 93.0 29 0.00063 42.8 25.2 23 664-686 241-263 (739)
132 KOG1853 LIS1-interacting prote 93.0 15 0.00032 39.3 22.4 26 662-687 161-186 (333)
133 PRK04778 septation ring format 92.9 14 0.0003 46.0 23.4 10 351-360 59-68 (569)
134 PF06785 UPF0242: Uncharacteri 92.8 19 0.00041 40.1 22.7 79 608-686 133-222 (401)
135 PF08614 ATG16: Autophagy prot 92.8 0.86 1.9E-05 48.2 10.9 71 616-686 109-179 (194)
136 KOG0978 E3 ubiquitin ligase in 92.7 34 0.00073 42.8 34.7 78 611-688 540-617 (698)
137 PF04437 RINT1_TIP1: RINT-1 / 92.7 1.5 3.2E-05 53.6 14.4 124 944-1073 353-491 (494)
138 KOG0976 Rho/Rac1-interacting s 92.6 34 0.00073 42.4 29.5 6 1012-1017 954-959 (1265)
139 KOG0979 Structural maintenance 92.4 16 0.00036 46.5 22.2 28 947-974 836-864 (1072)
140 TIGR01843 type_I_hlyD type I s 92.3 21 0.00046 42.4 23.5 23 664-686 245-267 (423)
141 KOG2129 Uncharacterized conser 92.3 25 0.00054 40.3 22.2 10 472-481 85-94 (552)
142 COG2433 Uncharacterized conser 92.3 2.8 6.1E-05 50.3 15.0 79 608-686 428-509 (652)
143 PF10168 Nup88: Nuclear pore c 92.3 12 0.00026 47.6 21.6 75 612-686 635-713 (717)
144 PF15619 Lebercilin: Ciliary p 92.3 17 0.00037 38.3 23.9 27 618-644 120-146 (194)
145 KOG0978 E3 ubiquitin ligase in 92.1 36 0.00079 42.5 24.6 56 634-689 549-604 (698)
146 PF13870 DUF4201: Domain of un 92.1 17 0.00036 37.9 21.7 37 610-646 85-121 (177)
147 PF05701 WEMBL: Weak chloropla 92.1 29 0.00063 42.7 24.3 28 654-681 389-416 (522)
148 KOG2991 Splicing regulator [RN 91.5 22 0.00048 38.1 24.9 53 634-686 254-306 (330)
149 PF04156 IncA: IncA protein; 91.5 6.7 0.00014 41.3 15.9 14 663-676 170-183 (191)
150 PRK10884 SH3 domain-containing 91.4 2.5 5.4E-05 45.0 12.3 75 609-686 93-167 (206)
151 PF08614 ATG16: Autophagy prot 91.4 2.5 5.5E-05 44.7 12.4 66 608-673 115-180 (194)
152 PF05667 DUF812: Protein of un 91.2 47 0.001 41.3 30.8 71 563-633 443-529 (594)
153 PF09789 DUF2353: Uncharacteri 91.1 19 0.00041 40.8 19.3 83 608-690 78-172 (319)
154 KOG4360 Uncharacterized coiled 90.9 20 0.00042 42.4 19.3 78 609-686 219-296 (596)
155 PRK01156 chromosome segregatio 90.9 67 0.0015 42.5 36.4 33 654-686 412-444 (895)
156 PF14915 CCDC144C: CCDC144C pr 90.7 31 0.00067 38.3 30.3 34 655-688 204-237 (305)
157 KOG1899 LAR transmembrane tyro 90.7 6.3 0.00014 47.2 15.3 22 1001-1022 707-728 (861)
158 PF15254 CCDC14: Coiled-coil d 90.5 37 0.0008 42.3 21.9 34 614-647 492-525 (861)
159 COG1340 Uncharacterized archae 90.4 34 0.00073 38.2 24.3 21 613-633 162-182 (294)
160 KOG1003 Actin filament-coating 90.4 24 0.00053 36.6 22.9 106 572-684 93-198 (205)
161 PF04111 APG6: Autophagy prote 90.4 4.3 9.3E-05 46.3 13.8 32 656-687 104-135 (314)
162 PF09730 BicD: Microtubule-ass 90.3 40 0.00088 42.5 22.9 47 611-657 99-148 (717)
163 PF05911 DUF869: Plant protein 90.0 33 0.00071 43.8 22.1 39 634-672 124-162 (769)
164 KOG4673 Transcription factor T 89.8 57 0.0012 39.9 29.2 47 533-579 585-631 (961)
165 PRK10884 SH3 domain-containing 89.8 3.2 7E-05 44.1 11.4 73 613-688 90-162 (206)
166 TIGR01843 type_I_hlyD type I s 89.8 40 0.00088 40.0 22.5 69 614-682 201-270 (423)
167 PF00038 Filament: Intermediat 89.6 42 0.00092 38.2 34.1 21 527-547 74-94 (312)
168 PF06785 UPF0242: Uncharacteri 89.6 11 0.00024 41.9 15.3 46 611-656 129-174 (401)
169 PLN02939 transferase, transfer 89.5 38 0.00083 44.1 22.3 27 656-682 374-400 (977)
170 PF05010 TACC: Transforming ac 89.4 33 0.00071 36.6 25.6 73 613-685 122-195 (207)
171 PF15070 GOLGA2L5: Putative go 89.4 67 0.0015 40.2 29.9 35 613-647 178-212 (617)
172 KOG0804 Cytoplasmic Zn-finger 89.4 13 0.00028 43.2 16.2 22 663-684 426-447 (493)
173 TIGR02680 conserved hypothetic 89.3 1.1E+02 0.0023 42.5 30.6 20 428-447 725-744 (1353)
174 KOG0946 ER-Golgi vesicle-tethe 89.2 42 0.00092 41.9 21.1 28 660-687 794-821 (970)
175 KOG0964 Structural maintenance 89.1 36 0.00078 43.4 20.7 15 1060-1074 946-960 (1200)
176 KOG0982 Centrosomal protein Nu 89.0 51 0.0011 38.2 22.7 31 659-689 361-391 (502)
177 KOG0979 Structural maintenance 88.9 73 0.0016 41.1 23.4 10 1084-1093 995-1004(1072)
178 COG4026 Uncharacterized protei 88.9 3.7 8.1E-05 42.8 10.5 64 609-672 142-205 (290)
179 PF04111 APG6: Autophagy prote 88.8 6.2 0.00014 45.0 13.6 72 615-686 49-127 (314)
180 COG4026 Uncharacterized protei 88.8 4.8 0.0001 42.0 11.2 60 622-681 141-200 (290)
181 PF10168 Nup88: Nuclear pore c 88.7 47 0.001 42.4 22.4 20 185-204 244-263 (717)
182 PF13514 AAA_27: AAA domain 88.4 1.1E+02 0.0024 41.5 31.8 30 27-56 72-101 (1111)
183 PRK10361 DNA recombination pro 87.9 69 0.0015 38.5 24.2 13 625-637 142-154 (475)
184 PRK11281 hypothetical protein; 87.9 17 0.00036 48.5 18.2 26 608-633 191-216 (1113)
185 KOG4674 Uncharacterized conser 87.8 1.3E+02 0.0029 41.7 37.5 71 526-596 764-834 (1822)
186 TIGR03007 pepcterm_ChnLen poly 87.7 49 0.0011 40.5 21.6 24 662-685 321-344 (498)
187 KOG1962 B-cell receptor-associ 87.7 3.8 8.3E-05 43.4 10.0 38 651-688 172-209 (216)
188 TIGR01005 eps_transp_fam exopo 87.7 47 0.001 43.0 22.4 18 611-628 290-307 (754)
189 KOG4809 Rab6 GTPase-interactin 87.5 39 0.00085 40.3 18.6 15 560-574 338-352 (654)
190 PF09730 BicD: Microtubule-ass 87.5 58 0.0013 41.2 21.5 23 523-545 267-289 (717)
191 COG2433 Uncharacterized conser 87.4 10 0.00022 45.7 14.3 16 131-147 59-74 (652)
192 PF01576 Myosin_tail_1: Myosin 87.3 0.18 3.8E-06 65.4 0.0 78 609-686 426-503 (859)
193 PRK10929 putative mechanosensi 87.2 25 0.00054 46.7 19.2 26 608-633 172-197 (1109)
194 TIGR03185 DNA_S_dndD DNA sulfu 87.1 81 0.0017 40.1 23.5 69 619-687 394-464 (650)
195 COG5185 HEC1 Protein involved 87.0 70 0.0015 37.5 21.1 17 947-963 602-618 (622)
196 PF14197 Cep57_CLD_2: Centroso 86.9 9.7 0.00021 33.0 10.3 64 614-684 3-66 (69)
197 COG4942 Membrane-bound metallo 86.8 72 0.0016 37.5 29.7 26 660-685 219-244 (420)
198 PF01576 Myosin_tail_1: Myosin 86.7 0.2 4.3E-06 64.9 0.0 23 524-546 204-226 (859)
199 PF12325 TMF_TATA_bd: TATA ele 86.5 33 0.00071 33.3 15.4 13 565-577 21-33 (120)
200 PF10174 Cast: RIM-binding pro 86.5 1.1E+02 0.0024 39.3 31.1 126 560-685 465-596 (775)
201 KOG4593 Mitotic checkpoint pro 86.4 95 0.0021 38.5 27.6 23 470-492 85-107 (716)
202 COG1382 GimC Prefoldin, chaper 86.4 20 0.00042 34.5 12.9 76 611-686 22-112 (119)
203 PF14197 Cep57_CLD_2: Centroso 86.3 8 0.00017 33.5 9.5 61 620-687 2-62 (69)
204 PF09304 Cortex-I_coil: Cortex 86.2 13 0.00028 34.8 11.2 16 615-630 36-51 (107)
205 KOG4674 Uncharacterized conser 86.1 1.6E+02 0.0036 40.9 31.7 40 647-686 847-886 (1822)
206 PF10186 Atg14: UV radiation r 86.0 49 0.0011 37.3 19.1 25 661-685 122-146 (302)
207 PF10186 Atg14: UV radiation r 86.0 36 0.00078 38.4 18.0 11 949-959 286-296 (302)
208 PF12777 MT: Microtubule-bindi 85.9 67 0.0015 37.3 20.2 19 514-532 8-26 (344)
209 PF08826 DMPK_coil: DMPK coile 85.9 12 0.00026 31.5 10.0 36 642-677 23-58 (61)
210 COG3074 Uncharacterized protei 85.7 7.8 0.00017 32.8 8.6 38 649-686 23-60 (79)
211 PF13851 GAS: Growth-arrest sp 85.7 53 0.0012 34.9 21.9 76 610-685 87-163 (201)
212 KOG2129 Uncharacterized conser 85.6 76 0.0016 36.6 20.9 22 616-637 253-274 (552)
213 PF09755 DUF2046: Uncharacteri 85.4 69 0.0015 36.0 26.6 45 638-682 157-202 (310)
214 PF10146 zf-C4H2: Zinc finger- 85.4 46 0.001 36.1 17.1 33 655-687 71-103 (230)
215 PF00769 ERM: Ezrin/radixin/mo 85.4 14 0.00029 40.7 13.3 19 565-583 10-28 (246)
216 KOG1937 Uncharacterized conser 85.0 85 0.0019 36.7 21.8 27 661-687 392-418 (521)
217 KOG0243 Kinesin-like protein [ 85.0 40 0.00086 43.8 18.5 40 248-287 164-219 (1041)
218 KOG0995 Centromere-associated 84.9 1E+02 0.0022 37.5 32.1 59 487-545 265-325 (581)
219 PF10205 KLRAQ: Predicted coil 84.8 16 0.00035 34.0 11.2 71 614-684 3-73 (102)
220 PF15254 CCDC14: Coiled-coil d 84.4 1.2E+02 0.0026 38.1 21.3 34 653-686 517-550 (861)
221 KOG1962 B-cell receptor-associ 84.3 13 0.00028 39.5 11.8 62 614-675 149-210 (216)
222 COG4372 Uncharacterized protei 84.1 85 0.0018 36.0 28.4 70 610-679 211-280 (499)
223 COG0497 RecN ATPase involved i 84.1 1.1E+02 0.0025 37.4 21.5 30 658-687 342-371 (557)
224 PF11559 ADIP: Afadin- and alp 83.5 21 0.00044 36.1 12.9 9 677-685 138-146 (151)
225 KOG4593 Mitotic checkpoint pro 83.4 1.3E+02 0.0028 37.5 30.5 24 1057-1080 631-661 (716)
226 PF13870 DUF4201: Domain of un 83.0 62 0.0014 33.6 18.5 52 635-686 82-133 (177)
227 TIGR00634 recN DNA repair prot 82.9 1E+02 0.0022 38.4 21.3 28 659-686 347-374 (563)
228 PF07889 DUF1664: Protein of u 82.2 15 0.00032 35.9 10.4 65 614-678 59-123 (126)
229 PF09738 DUF2051: Double stran 82.1 30 0.00066 39.1 14.5 65 613-677 102-166 (302)
230 KOG0249 LAR-interacting protei 82.0 79 0.0017 39.1 18.3 26 611-636 232-257 (916)
231 PF00038 Filament: Intermediat 82.0 99 0.0022 35.2 33.2 27 657-683 261-287 (312)
232 PF04012 PspA_IM30: PspA/IM30 81.6 81 0.0018 34.0 21.9 75 610-684 99-184 (221)
233 KOG2891 Surface glycoprotein [ 81.5 85 0.0018 34.1 18.4 17 304-320 122-138 (445)
234 TIGR02977 phageshock_pspA phag 81.3 84 0.0018 33.9 24.2 75 608-682 98-183 (219)
235 PF15066 CAGE1: Cancer-associa 81.2 1.2E+02 0.0026 35.7 19.8 25 521-545 331-355 (527)
236 KOG0999 Microtubule-associated 81.1 1.3E+02 0.0029 36.0 26.2 14 564-577 111-124 (772)
237 PF10146 zf-C4H2: Zinc finger- 80.9 72 0.0016 34.7 16.3 62 612-680 42-103 (230)
238 PRK11281 hypothetical protein; 80.8 58 0.0013 43.6 18.5 27 613-639 125-151 (1113)
239 PF03962 Mnd1: Mnd1 family; I 80.8 15 0.00032 38.7 10.9 77 610-687 70-150 (188)
240 PF09304 Cortex-I_coil: Cortex 80.8 50 0.0011 31.0 14.2 31 611-641 46-76 (107)
241 PRK15422 septal ring assembly 80.6 14 0.00031 32.4 8.6 11 618-628 20-30 (79)
242 KOG4302 Microtubule-associated 80.5 1E+02 0.0022 38.5 19.2 78 519-596 59-139 (660)
243 PF08826 DMPK_coil: DMPK coile 80.3 28 0.0006 29.4 10.0 34 652-685 26-59 (61)
244 PF13514 AAA_27: AAA domain 80.2 1.7E+02 0.0036 39.8 23.4 23 294-317 11-33 (1111)
245 PF10212 TTKRSYEDQ: Predicted 80.0 1.5E+02 0.0032 35.9 20.4 20 241-260 166-185 (518)
246 PF05911 DUF869: Plant protein 79.6 1.9E+02 0.0042 37.1 24.8 79 608-686 119-204 (769)
247 KOG0946 ER-Golgi vesicle-tethe 79.6 1.8E+02 0.004 36.7 25.4 38 651-688 848-885 (970)
248 KOG1899 LAR transmembrane tyro 79.3 1.5E+02 0.0032 36.3 19.0 16 565-580 179-194 (861)
249 TIGR03007 pepcterm_ChnLen poly 79.1 1.6E+02 0.0035 35.9 25.2 28 656-683 353-380 (498)
250 TIGR03319 YmdA_YtgF conserved 79.0 95 0.0021 38.1 18.6 114 562-687 20-133 (514)
251 PF06818 Fez1: Fez1; InterPro 79.0 43 0.00094 35.3 13.3 20 667-686 133-152 (202)
252 KOG0243 Kinesin-like protein [ 78.5 1.4E+02 0.003 39.1 20.0 30 297-326 173-204 (1041)
253 PF15456 Uds1: Up-regulated Du 78.1 35 0.00075 33.3 11.6 80 607-687 20-110 (124)
254 KOG3684 Ca2+-activated K+ chan 78.1 96 0.0021 36.6 16.8 38 453-490 346-383 (489)
255 PF11932 DUF3450: Protein of u 78.1 27 0.0006 38.5 12.6 68 610-677 43-110 (251)
256 PF12325 TMF_TATA_bd: TATA ele 77.8 71 0.0015 31.0 15.9 11 564-574 34-44 (120)
257 KOG1937 Uncharacterized conser 77.7 1.5E+02 0.0033 34.8 27.4 83 515-597 287-375 (521)
258 PF10226 DUF2216: Uncharacteri 77.6 94 0.002 32.3 16.2 79 611-689 57-139 (195)
259 PF07106 TBPIP: Tat binding pr 77.5 9.8 0.00021 39.2 8.4 67 608-686 71-137 (169)
260 KOG0804 Cytoplasmic Zn-finger 77.3 80 0.0017 37.0 15.8 21 661-681 431-451 (493)
261 PF05622 HOOK: HOOK protein; 77.3 0.75 1.6E-05 58.8 0.0 8 313-320 129-136 (713)
262 cd00632 Prefoldin_beta Prefold 76.8 51 0.0011 31.0 12.3 33 652-684 71-103 (105)
263 PF15290 Syntaphilin: Golgi-lo 76.8 56 0.0012 35.9 13.6 27 611-637 119-145 (305)
264 COG1340 Uncharacterized archae 76.3 1.4E+02 0.003 33.5 27.5 10 569-578 140-149 (294)
265 PLN02939 transferase, transfer 76.1 1.8E+02 0.0038 38.3 20.2 15 809-823 610-624 (977)
266 KOG4603 TBP-1 interacting prot 75.9 23 0.0005 35.7 9.7 35 609-643 79-113 (201)
267 PRK10698 phage shock protein P 75.9 1.2E+02 0.0027 32.8 24.3 76 608-683 98-184 (222)
268 KOG4364 Chromatin assembly fac 75.5 1.7E+02 0.0037 36.1 18.3 7 1070-1076 743-749 (811)
269 PF10498 IFT57: Intra-flagella 75.4 1.5E+02 0.0032 34.6 17.9 6 502-507 216-221 (359)
270 KOG4403 Cell surface glycoprot 74.9 1.7E+02 0.0037 34.0 22.0 21 563-583 305-325 (575)
271 PF13863 DUF4200: Domain of un 74.7 86 0.0019 30.4 17.2 55 632-686 55-109 (126)
272 PRK04406 hypothetical protein; 72.7 26 0.00056 31.0 8.3 21 621-641 9-29 (75)
273 TIGR02338 gimC_beta prefoldin, 72.7 77 0.0017 30.2 12.4 31 652-682 75-105 (110)
274 COG1382 GimC Prefoldin, chaper 72.0 61 0.0013 31.2 11.2 36 566-601 12-50 (119)
275 PF13166 AAA_13: AAA domain 71.7 3E+02 0.0065 35.3 22.8 32 656-687 422-453 (712)
276 PF15188 CCDC-167: Coiled-coil 71.4 15 0.00032 33.1 6.6 63 615-688 4-66 (85)
277 PF01920 Prefoldin_2: Prefoldi 71.4 86 0.0019 29.2 12.5 29 657-685 68-96 (106)
278 PF10211 Ax_dynein_light: Axon 71.3 1.4E+02 0.0031 31.4 15.7 12 499-510 76-87 (189)
279 PTZ00121 MAEBL; Provisional 71.1 3.9E+02 0.0084 36.4 32.4 7 266-272 826-832 (2084)
280 PF10498 IFT57: Intra-flagella 71.0 89 0.0019 36.4 14.7 32 655-686 284-315 (359)
281 KOG0963 Transcription factor/C 70.9 2.6E+02 0.0057 34.4 30.6 25 522-546 190-214 (629)
282 PRK09343 prefoldin subunit bet 70.8 1.1E+02 0.0023 29.8 13.1 40 647-686 74-113 (121)
283 PF03962 Mnd1: Mnd1 family; I 70.7 1.1E+02 0.0023 32.3 14.0 24 523-546 71-94 (188)
284 KOG0239 Kinesin (KAR3 subfamil 70.4 1.8E+02 0.0039 36.9 18.2 20 812-831 480-500 (670)
285 PRK13729 conjugal transfer pil 70.2 14 0.0003 43.8 8.0 17 1061-1077 444-460 (475)
286 COG5185 HEC1 Protein involved 70.2 2.3E+02 0.005 33.5 28.0 21 488-508 302-322 (622)
287 PF10267 Tmemb_cc2: Predicted 70.2 2.2E+02 0.0048 33.5 17.6 19 660-678 300-318 (395)
288 KOG0288 WD40 repeat protein Ti 69.9 85 0.0018 36.4 13.6 19 527-545 5-23 (459)
289 KOG0239 Kinesin (KAR3 subfamil 69.8 1.2E+02 0.0026 38.4 16.5 18 948-965 569-586 (670)
290 PF14915 CCDC144C: CCDC144C pr 69.6 1.9E+02 0.0042 32.3 27.3 84 563-653 182-265 (305)
291 PRK10869 recombination and rep 69.6 2.9E+02 0.0063 34.4 21.0 31 657-687 340-370 (553)
292 PF01920 Prefoldin_2: Prefoldi 69.5 72 0.0016 29.7 11.6 36 647-682 65-100 (106)
293 PF03148 Tektin: Tektin family 69.3 2.4E+02 0.0052 33.3 24.0 168 482-674 212-382 (384)
294 PRK00846 hypothetical protein; 69.2 34 0.00073 30.3 8.2 18 665-682 41-58 (77)
295 PF07798 DUF1640: Protein of u 69.2 1.5E+02 0.0032 30.8 15.9 109 573-690 46-156 (177)
296 PF09728 Taxilin: Myosin-like 69.0 2.1E+02 0.0046 32.6 37.5 78 608-685 222-299 (309)
297 KOG2264 Exostosin EXT1L [Signa 68.9 37 0.00081 40.4 10.8 59 629-687 92-150 (907)
298 KOG1103 Predicted coiled-coil 68.8 2.1E+02 0.0044 32.3 22.6 19 530-548 141-159 (561)
299 TIGR01000 bacteriocin_acc bact 68.7 2.7E+02 0.0059 33.6 24.3 25 662-686 288-312 (457)
300 PF05700 BCAS2: Breast carcino 68.6 59 0.0013 35.1 12.0 74 611-687 138-211 (221)
301 PRK02119 hypothetical protein; 68.4 33 0.00071 30.1 8.0 21 621-641 7-27 (73)
302 COG0419 SbcC ATPase involved i 68.3 4E+02 0.0086 35.4 27.1 39 950-988 740-778 (908)
303 PF05266 DUF724: Protein of un 68.2 81 0.0017 33.2 12.4 16 619-634 127-142 (190)
304 PF05266 DUF724: Protein of un 68.1 60 0.0013 34.2 11.4 20 665-684 159-178 (190)
305 TIGR01005 eps_transp_fam exopo 68.0 3.6E+02 0.0079 34.9 29.1 26 658-683 376-401 (754)
306 KOG0993 Rab5 GTPase effector R 67.8 2.4E+02 0.0052 32.7 16.8 152 531-682 9-186 (542)
307 PF15397 DUF4618: Domain of un 67.5 2E+02 0.0044 31.7 27.6 27 661-687 189-215 (258)
308 PF08172 CASP_C: CASP C termin 67.4 55 0.0012 36.0 11.5 33 652-684 94-126 (248)
309 PF04102 SlyX: SlyX; InterPro 67.1 28 0.0006 30.2 7.3 44 633-676 7-50 (69)
310 TIGR03752 conj_TIGR03752 integ 66.7 55 0.0012 39.0 11.8 37 609-645 59-95 (472)
311 PF10205 KLRAQ: Predicted coil 66.7 1.1E+02 0.0023 28.7 11.3 15 623-637 5-19 (102)
312 TIGR02338 gimC_beta prefoldin, 66.7 99 0.0022 29.4 11.8 31 656-686 72-102 (110)
313 PF02403 Seryl_tRNA_N: Seryl-t 66.4 31 0.00067 32.6 8.3 72 608-683 28-99 (108)
314 PF07106 TBPIP: Tat binding pr 66.2 58 0.0012 33.6 10.9 23 611-633 81-103 (169)
315 KOG4001 Axonemal dynein light 66.1 77 0.0017 33.0 11.1 59 519-577 190-252 (259)
316 KOG0018 Structural maintenance 66.1 4.2E+02 0.0091 34.9 32.3 27 661-687 447-473 (1141)
317 PF05557 MAD: Mitotic checkpoi 66.1 2 4.2E-05 55.2 0.0 7 1069-1075 656-662 (722)
318 PF05384 DegS: Sensor protein 66.0 1.6E+02 0.0035 30.1 21.2 59 627-685 95-153 (159)
319 PF10234 Cluap1: Clusterin-ass 66.0 1.9E+02 0.004 32.2 15.1 47 611-657 171-217 (267)
320 PF09738 DUF2051: Double stran 65.7 1.2E+02 0.0027 34.3 14.1 66 611-676 107-172 (302)
321 PF05557 MAD: Mitotic checkpoi 65.2 2.1 4.5E-05 54.9 0.0 21 561-581 306-326 (722)
322 COG2900 SlyX Uncharacterized p 65.2 42 0.00092 29.1 7.7 29 660-688 31-59 (72)
323 TIGR01000 bacteriocin_acc bact 65.2 3.1E+02 0.0068 33.1 24.8 27 655-681 288-314 (457)
324 PF05010 TACC: Transforming ac 65.1 2E+02 0.0043 30.8 24.9 23 661-683 164-186 (207)
325 COG1730 GIM5 Predicted prefold 65.1 1.4E+02 0.003 30.0 12.6 23 662-684 112-134 (145)
326 PF14389 Lzipper-MIP1: Leucine 64.9 41 0.00088 30.7 8.3 56 527-582 7-76 (88)
327 KOG4809 Rab6 GTPase-interactin 64.9 3.2E+02 0.0069 33.1 21.1 46 608-653 420-465 (654)
328 PF05529 Bap31: B-cell recepto 64.6 50 0.0011 34.8 10.3 17 614-630 123-139 (192)
329 PRK00295 hypothetical protein; 64.2 50 0.0011 28.6 8.2 20 663-682 31-50 (68)
330 PF05837 CENP-H: Centromere pr 64.0 63 0.0014 30.6 9.7 70 617-687 4-73 (106)
331 TIGR03495 phage_LysB phage lys 63.7 1.1E+02 0.0025 30.2 11.6 29 658-686 68-96 (135)
332 PF10458 Val_tRNA-synt_C: Valy 63.6 20 0.00043 30.7 5.8 20 657-676 45-64 (66)
333 PRK09343 prefoldin subunit bet 63.5 1.5E+02 0.0032 28.8 14.0 9 614-622 76-84 (121)
334 PLN03188 kinesin-12 family pro 63.4 5.1E+02 0.011 35.0 30.4 42 95-137 200-248 (1320)
335 KOG2751 Beclin-like protein [S 63.1 2.6E+02 0.0056 32.9 15.9 27 662-688 243-269 (447)
336 PTZ00121 MAEBL; Provisional 63.0 5.4E+02 0.012 35.1 32.5 13 184-196 777-789 (2084)
337 PRK04325 hypothetical protein; 62.6 49 0.0011 29.1 8.1 18 623-640 9-26 (74)
338 KOG4807 F-actin binding protei 62.6 2.9E+02 0.0062 31.8 17.8 161 524-684 294-482 (593)
339 PRK02793 phi X174 lysis protei 62.6 48 0.001 29.0 7.9 18 622-639 7-24 (72)
340 PF12329 TMF_DNA_bd: TATA elem 62.5 1.1E+02 0.0024 26.9 10.3 28 609-636 12-39 (74)
341 PF06428 Sec2p: GDP/GTP exchan 62.3 8.6 0.00019 35.9 3.5 72 608-686 7-79 (100)
342 PF07889 DUF1664: Protein of u 62.2 1.4E+02 0.0029 29.3 11.7 28 654-681 92-119 (126)
343 PF10234 Cluap1: Clusterin-ass 62.0 2.4E+02 0.0052 31.4 15.0 13 304-316 3-15 (267)
344 PRK00736 hypothetical protein; 61.9 50 0.0011 28.6 7.8 16 624-639 6-21 (68)
345 KOG2751 Beclin-like protein [S 61.7 1.8E+02 0.0038 34.2 14.3 65 617-681 191-255 (447)
346 PRK13729 conjugal transfer pil 61.6 33 0.00071 40.9 8.8 54 626-686 72-125 (475)
347 KOG4302 Microtubule-associated 61.6 2.6E+02 0.0056 35.1 16.7 28 659-686 227-254 (660)
348 PF05769 DUF837: Protein of un 61.4 2.1E+02 0.0046 29.9 21.4 20 667-686 155-174 (181)
349 PF10046 BLOC1_2: Biogenesis o 61.3 1.3E+02 0.0029 28.0 11.3 33 650-682 65-97 (99)
350 PF10211 Ax_dynein_light: Axon 61.2 2.2E+02 0.0048 30.0 15.0 27 520-546 126-152 (189)
351 PF09731 Mitofilin: Mitochondr 61.1 4.2E+02 0.009 33.1 22.5 6 769-774 464-469 (582)
352 PF01486 K-box: K-box region; 61.0 1.1E+02 0.0024 28.4 10.8 79 607-687 10-97 (100)
353 PRK15178 Vi polysaccharide exp 61.0 3.1E+02 0.0068 32.8 16.7 23 610-632 280-302 (434)
354 KOG0240 Kinesin (SMY1 subfamil 60.9 2.9E+02 0.0063 33.7 16.2 144 533-687 339-485 (607)
355 PF06008 Laminin_I: Laminin Do 60.9 2.7E+02 0.0058 30.9 22.8 63 612-674 181-243 (264)
356 KOG0288 WD40 repeat protein Ti 60.9 3.3E+02 0.0071 31.9 16.8 11 817-827 245-255 (459)
357 PF04012 PspA_IM30: PspA/IM30 60.7 2.4E+02 0.0052 30.3 19.7 20 563-582 54-73 (221)
358 PF12761 End3: Actin cytoskele 60.5 84 0.0018 33.0 10.5 33 654-686 163-195 (195)
359 PF00170 bZIP_1: bZIP transcri 60.4 94 0.002 26.3 9.3 34 653-686 28-61 (64)
360 PRK03947 prefoldin subunit alp 60.4 1.6E+02 0.0035 29.2 12.6 18 562-579 8-25 (140)
361 PF11180 DUF2968: Protein of u 60.3 2.2E+02 0.0048 29.8 13.4 35 654-688 150-184 (192)
362 smart00338 BRLZ basic region l 60.1 95 0.0021 26.3 9.4 38 650-687 25-62 (65)
363 PF07851 TMPIT: TMPIT-like pro 59.5 1.2E+02 0.0026 34.8 12.4 76 610-685 5-81 (330)
364 PF10805 DUF2730: Protein of u 59.4 81 0.0017 29.9 9.6 28 655-682 69-96 (106)
365 PRK10246 exonuclease subunit S 59.3 6E+02 0.013 34.4 24.4 25 22-46 33-57 (1047)
366 COG0419 SbcC ATPase involved i 59.3 5.6E+02 0.012 34.0 30.2 16 1084-1099 853-868 (908)
367 PF13094 CENP-Q: CENP-Q, a CEN 59.2 68 0.0015 32.7 9.9 38 610-647 21-58 (160)
368 COG2900 SlyX Uncharacterized p 58.7 68 0.0015 27.9 7.8 13 662-674 40-52 (72)
369 KOG0942 E3 ubiquitin protein l 58.4 6.8 0.00015 49.1 2.7 30 419-448 25-54 (1001)
370 TIGR03752 conj_TIGR03752 integ 58.2 81 0.0017 37.6 11.2 68 610-683 74-141 (472)
371 PF07058 Myosin_HC-like: Myosi 58.0 3.1E+02 0.0068 30.7 15.9 23 611-633 110-132 (351)
372 KOG0162 Myosin class I heavy c 57.2 11 0.00023 46.2 3.9 28 424-451 697-724 (1106)
373 PRK03947 prefoldin subunit alp 57.0 1.5E+02 0.0033 29.3 11.8 26 658-683 108-133 (140)
374 PRK00846 hypothetical protein; 56.6 1E+02 0.0022 27.5 8.8 30 657-686 26-55 (77)
375 PF10212 TTKRSYEDQ: Predicted 55.5 2.6E+02 0.0056 33.9 14.7 21 304-324 279-299 (518)
376 TIGR03017 EpsF chain length de 55.2 4.4E+02 0.0095 31.6 24.3 180 494-687 144-340 (444)
377 PRK00409 recombination and DNA 54.9 2.2E+02 0.0047 37.1 15.4 16 350-365 367-383 (782)
378 KOG3433 Protein involved in me 54.5 1.3E+02 0.0029 31.0 10.4 64 615-685 80-143 (203)
379 PF07989 Microtub_assoc: Micro 54.2 1.2E+02 0.0025 26.9 8.9 26 608-633 6-31 (75)
380 PF01166 TSC22: TSC-22/dip/bun 53.3 20 0.00044 29.5 3.7 31 658-688 14-44 (59)
381 KOG4005 Transcription factor X 53.2 2.1E+02 0.0046 30.6 12.0 15 527-541 89-103 (292)
382 PF00170 bZIP_1: bZIP transcri 53.1 1.4E+02 0.003 25.2 9.3 39 644-682 26-64 (64)
383 PF15450 DUF4631: Domain of un 52.7 5E+02 0.011 31.5 31.0 77 608-687 350-434 (531)
384 PF10224 DUF2205: Predicted co 52.7 68 0.0015 28.7 7.2 38 649-686 21-58 (80)
385 COG1842 PspA Phage shock prote 52.2 3.4E+02 0.0074 29.4 22.3 14 526-539 50-63 (225)
386 PF07393 Sec10: Exocyst comple 51.9 2.9E+02 0.0063 35.5 16.1 166 893-1074 530-698 (710)
387 TIGR02231 conserved hypothetic 51.9 1.4E+02 0.003 36.9 12.7 30 609-638 71-100 (525)
388 PF04899 MbeD_MobD: MbeD/MobD 51.5 1.7E+02 0.0036 25.6 10.3 46 639-684 23-68 (70)
389 PF07851 TMPIT: TMPIT-like pro 51.4 1.4E+02 0.0031 34.1 11.4 26 975-1000 270-295 (330)
390 PF09403 FadA: Adhesion protei 51.3 2.5E+02 0.0054 27.5 15.3 14 663-676 105-118 (126)
391 KOG4403 Cell surface glycoprot 51.0 4.7E+02 0.01 30.7 17.9 15 533-547 257-271 (575)
392 TIGR02449 conserved hypothetic 50.7 1.6E+02 0.0035 25.2 9.4 19 655-673 32-50 (65)
393 PF12072 DUF3552: Domain of un 50.5 3.4E+02 0.0073 28.8 18.5 11 672-682 120-130 (201)
394 PF08172 CASP_C: CASP C termin 50.4 1.9E+02 0.0041 31.9 12.0 23 610-632 80-102 (248)
395 TIGR01069 mutS2 MutS2 family p 49.9 3.2E+02 0.0069 35.5 15.8 11 196-206 220-230 (771)
396 KOG4787 Uncharacterized conser 49.9 4.9E+02 0.011 31.7 15.5 26 661-686 518-543 (852)
397 KOG2391 Vacuolar sorting prote 49.3 1.1E+02 0.0023 34.8 9.6 21 250-270 126-146 (365)
398 KOG3433 Protein involved in me 49.1 1.8E+02 0.004 30.0 10.4 9 752-760 170-178 (203)
399 COG1730 GIM5 Predicted prefold 49.1 2.9E+02 0.0064 27.8 13.9 39 608-646 93-131 (145)
400 PF14389 Lzipper-MIP1: Leucine 49.1 61 0.0013 29.6 6.6 29 659-687 55-83 (88)
401 KOG2685 Cystoskeletal protein 49.0 5.1E+02 0.011 30.5 24.5 35 503-541 84-118 (421)
402 KOG4603 TBP-1 interacting prot 49.0 1.7E+02 0.0038 29.8 10.1 36 616-651 79-114 (201)
403 PF07058 Myosin_HC-like: Myosi 48.9 1.7E+02 0.0036 32.7 10.9 29 658-686 59-87 (351)
404 PF03961 DUF342: Protein of un 48.7 91 0.002 37.6 10.2 32 653-684 377-408 (451)
405 KOG4657 Uncharacterized conser 48.6 2.5E+02 0.0055 30.0 11.7 75 611-685 46-120 (246)
406 PRK00409 recombination and DNA 48.2 6.2E+02 0.014 32.9 18.1 10 196-205 225-234 (782)
407 KOG2077 JNK/SAPK-associated pr 48.0 1.4E+02 0.0031 35.9 10.9 27 661-687 353-379 (832)
408 PHA02414 hypothetical protein 47.9 1.7E+02 0.0037 26.8 8.9 48 634-681 33-80 (111)
409 PF07989 Microtub_assoc: Micro 47.6 2E+02 0.0043 25.4 9.6 25 615-639 6-30 (75)
410 TIGR02231 conserved hypothetic 47.6 1.6E+02 0.0034 36.4 12.3 34 652-685 139-172 (525)
411 PF13747 DUF4164: Domain of un 47.4 2.3E+02 0.0049 26.0 11.4 31 638-668 40-70 (89)
412 KOG4427 E3 ubiquitin protein l 47.3 17 0.00037 44.6 3.6 52 378-437 10-61 (1096)
413 PRK13182 racA polar chromosome 47.1 1.8E+02 0.0038 30.3 10.5 29 660-688 120-148 (175)
414 PF10046 BLOC1_2: Biogenesis o 46.9 2.3E+02 0.0051 26.3 10.4 20 655-674 77-96 (99)
415 PRK05431 seryl-tRNA synthetase 46.9 96 0.0021 37.1 9.8 74 608-685 27-100 (425)
416 PF14988 DUF4515: Domain of un 46.9 3.9E+02 0.0085 28.6 23.9 30 657-686 169-198 (206)
417 PF06632 XRCC4: DNA double-str 46.8 2E+02 0.0043 33.3 11.8 27 611-637 146-172 (342)
418 PF13747 DUF4164: Domain of un 46.7 2.3E+02 0.005 25.9 12.6 38 608-645 38-75 (89)
419 PF12240 Angiomotin_C: Angiomo 46.6 3.8E+02 0.0083 28.4 17.4 40 651-690 129-168 (205)
420 PF15035 Rootletin: Ciliary ro 46.4 3.7E+02 0.008 28.1 15.9 27 610-636 96-122 (182)
421 PLN02678 seryl-tRNA synthetase 45.9 1E+02 0.0023 37.0 9.8 74 609-686 33-106 (448)
422 PF12795 MscS_porin: Mechanose 45.5 4.4E+02 0.0095 28.8 21.3 25 608-632 149-173 (240)
423 PF05377 FlaC_arch: Flagella a 45.5 94 0.002 25.7 6.3 20 614-633 5-24 (55)
424 PRK12704 phosphodiesterase; Pr 45.4 6.8E+02 0.015 30.9 25.8 8 1034-1041 418-425 (520)
425 KOG2264 Exostosin EXT1L [Signa 45.4 1.4E+02 0.003 35.9 10.2 20 662-681 132-151 (907)
426 PF06046 Sec6: Exocyst complex 45.2 2.4E+02 0.0052 35.1 13.6 184 894-1099 361-550 (566)
427 PF04582 Reo_sigmaC: Reovirus 44.7 43 0.00094 38.0 6.0 75 613-687 81-155 (326)
428 KOG0992 Uncharacterized conser 44.7 6.3E+02 0.014 30.4 21.0 12 998-1009 555-566 (613)
429 PRK09841 cryptic autophosphory 44.3 8.2E+02 0.018 31.6 20.8 13 567-579 274-286 (726)
430 PF05335 DUF745: Protein of un 43.8 4.1E+02 0.0089 28.0 17.8 57 616-672 109-165 (188)
431 KOG0165 Microtubule-associated 43.7 37 0.00081 42.0 5.6 135 378-513 531-668 (1023)
432 PF02994 Transposase_22: L1 tr 43.5 65 0.0014 37.8 7.6 28 654-681 147-174 (370)
433 KOG1760 Molecular chaperone Pr 43.5 3.1E+02 0.0066 26.6 10.3 75 612-686 26-116 (131)
434 PF10267 Tmemb_cc2: Predicted 43.3 6.3E+02 0.014 29.9 16.4 43 539-581 248-290 (395)
435 cd00890 Prefoldin Prefoldin is 42.8 3.2E+02 0.0068 26.3 12.3 28 658-685 94-121 (129)
436 PF15290 Syntaphilin: Golgi-lo 42.2 5.2E+02 0.011 28.7 14.0 16 613-628 153-168 (305)
437 PHA03011 hypothetical protein; 42.1 1.6E+02 0.0035 27.0 8.0 15 633-647 67-81 (120)
438 PF06156 DUF972: Protein of un 42.0 1.2E+02 0.0027 28.7 7.7 26 661-686 25-50 (107)
439 PRK11546 zraP zinc resistance 41.7 1.5E+02 0.0032 29.7 8.4 68 609-683 47-114 (143)
440 PF05262 Borrelia_P83: Borreli 41.7 7.3E+02 0.016 30.2 19.9 11 284-294 23-33 (489)
441 PF04880 NUDE_C: NUDE protein, 41.5 42 0.00092 34.4 4.9 20 662-681 28-47 (166)
442 PRK00106 hypothetical protein; 41.5 7.7E+02 0.017 30.5 26.9 10 1010-1019 460-469 (535)
443 TIGR00293 prefoldin, archaeal 41.1 3.4E+02 0.0074 26.2 11.4 24 662-685 90-113 (126)
444 KOG3859 Septins (P-loop GTPase 41.1 5.1E+02 0.011 28.9 12.9 24 567-590 348-371 (406)
445 PRK10361 DNA recombination pro 40.9 7.4E+02 0.016 30.1 29.6 19 618-636 142-160 (475)
446 smart00502 BBC B-Box C-termina 40.7 3.2E+02 0.007 25.8 16.0 17 613-629 76-92 (127)
447 PF03338 Pox_J1: Poxvirus J1 p 40.3 40 0.00087 33.1 4.2 70 207-276 64-135 (145)
448 PF02841 GBP_C: Guanylate-bind 40.3 5.9E+02 0.013 28.8 16.8 124 519-678 174-297 (297)
449 PF11365 DUF3166: Protein of u 39.9 2.7E+02 0.0058 25.9 9.2 20 662-681 73-92 (96)
450 PF12761 End3: Actin cytoskele 39.5 2.1E+02 0.0046 30.1 9.6 19 522-540 97-115 (195)
451 PF08581 Tup_N: Tup N-terminal 39.4 2.8E+02 0.0061 24.8 11.5 73 608-683 3-75 (79)
452 PF10474 DUF2451: Protein of u 39.4 5.4E+02 0.012 28.1 13.9 47 945-991 91-141 (234)
453 PRK10636 putative ABC transpor 39.1 1.2E+02 0.0025 38.5 9.5 28 657-684 604-631 (638)
454 KOG0942 E3 ubiquitin protein l 38.9 57 0.0012 41.5 6.2 31 466-496 24-54 (1001)
455 COG4477 EzrA Negative regulato 38.8 8.1E+02 0.018 29.9 20.4 175 488-676 255-435 (570)
456 TIGR00634 recN DNA repair prot 38.4 8.8E+02 0.019 30.2 22.0 189 489-683 152-378 (563)
457 PF10458 Val_tRNA-synt_C: Valy 38.2 2.4E+02 0.0053 24.0 8.4 52 634-685 1-66 (66)
458 COG4717 Uncharacterized conser 38.1 1E+03 0.022 30.9 32.0 245 436-687 553-826 (984)
459 PF14282 FlxA: FlxA-like prote 38.0 1.9E+02 0.0041 27.4 8.4 58 630-687 19-80 (106)
460 PRK13169 DNA replication intia 37.8 1.6E+02 0.0034 28.1 7.7 47 640-686 4-50 (110)
461 PF08647 BRE1: BRE1 E3 ubiquit 37.8 3.3E+02 0.0073 25.2 12.2 77 610-686 4-80 (96)
462 PF04582 Reo_sigmaC: Reovirus 37.7 68 0.0015 36.4 6.1 124 537-678 30-153 (326)
463 KOG4196 bZIP transcription fac 37.7 4E+02 0.0087 26.0 10.4 67 503-580 49-115 (135)
464 TIGR03319 YmdA_YtgF conserved 37.7 8.7E+02 0.019 29.9 25.7 157 503-684 13-175 (514)
465 COG0497 RecN ATPase involved i 37.3 8.9E+02 0.019 30.0 22.0 197 485-688 161-372 (557)
466 KOG2010 Double stranded RNA bi 37.3 1.4E+02 0.003 33.5 8.2 73 611-683 135-207 (405)
467 COG5570 Uncharacterized small 37.2 67 0.0015 25.9 4.2 53 628-680 3-55 (57)
468 PF13094 CENP-Q: CENP-Q, a CEN 37.1 2.6E+02 0.0056 28.5 10.0 63 625-687 22-84 (160)
469 PF06548 Kinesin-related: Kine 36.9 7.9E+02 0.017 29.3 22.5 169 519-687 275-470 (488)
470 TIGR02894 DNA_bind_RsfA transc 36.5 2E+02 0.0044 29.2 8.6 53 608-660 103-155 (161)
471 KOG0377 Protein serine/threoni 36.4 26 0.00056 40.6 2.6 21 424-444 18-38 (631)
472 KOG0962 DNA repair protein RAD 36.4 1.3E+03 0.028 31.6 29.7 219 447-684 819-1053(1294)
473 KOG4005 Transcription factor X 36.4 5.2E+02 0.011 27.9 11.8 81 607-687 67-147 (292)
474 KOG2391 Vacuolar sorting prote 36.2 2.1E+02 0.0045 32.6 9.4 71 615-685 217-287 (365)
475 PRK10803 tol-pal system protei 36.0 1.2E+02 0.0027 33.6 8.0 53 635-687 38-90 (263)
476 cd00584 Prefoldin_alpha Prefol 35.9 4.2E+02 0.009 25.7 12.3 75 612-686 2-122 (129)
477 PF08763 Ca_chan_IQ: Voltage g 35.9 36 0.00079 25.2 2.4 17 425-441 11-27 (35)
478 PF14073 Cep57_CLD: Centrosome 35.8 5.2E+02 0.011 26.9 18.5 156 525-687 1-156 (178)
479 KOG3759 Uncharacterized RUN do 35.8 8.2E+02 0.018 29.1 15.5 163 519-681 62-250 (621)
480 KOG2629 Peroxisomal membrane a 35.7 3.5E+02 0.0076 30.2 10.9 77 613-692 119-195 (300)
481 PF04871 Uso1_p115_C: Uso1 / p 35.2 4.6E+02 0.01 26.0 15.5 105 556-670 4-110 (136)
482 PF14712 Snapin_Pallidin: Snap 35.2 3.5E+02 0.0075 24.6 11.0 77 610-686 15-92 (92)
483 PF08647 BRE1: BRE1 E3 ubiquit 35.0 3.7E+02 0.008 24.9 13.0 96 565-674 1-96 (96)
484 PLN02320 seryl-tRNA synthetase 34.9 1.7E+02 0.0038 35.5 9.4 71 609-684 93-163 (502)
485 TIGR00414 serS seryl-tRNA synt 34.7 2.4E+02 0.0051 33.8 10.6 69 609-677 30-102 (418)
486 PF10779 XhlA: Haemolysin XhlA 34.6 2.1E+02 0.0046 24.8 7.6 51 625-675 1-51 (71)
487 KOG3478 Prefoldin subunit 6, K 34.2 4.1E+02 0.009 25.2 12.7 87 609-695 5-120 (120)
488 KOG2891 Surface glycoprotein [ 33.9 6.7E+02 0.015 27.5 16.1 156 521-681 268-423 (445)
489 PF06008 Laminin_I: Laminin Do 33.5 7E+02 0.015 27.6 25.4 179 508-686 32-241 (264)
490 KOG4001 Axonemal dynein light 33.2 4.6E+02 0.01 27.5 10.6 72 610-687 179-250 (259)
491 PF06818 Fez1: Fez1; InterPro 33.2 6.2E+02 0.013 26.9 19.6 157 515-682 18-201 (202)
492 PF04899 MbeD_MobD: MbeD/MobD 33.0 3.3E+02 0.0072 23.8 9.5 60 618-677 9-68 (70)
493 KOG4427 E3 ubiquitin protein l 33.0 1.3E+02 0.0028 37.6 7.7 52 426-485 10-61 (1096)
494 PF09798 LCD1: DNA damage chec 32.9 9.5E+02 0.021 30.4 15.4 194 635-828 2-230 (654)
495 PF10779 XhlA: Haemolysin XhlA 32.9 2.6E+02 0.0057 24.2 7.9 51 632-682 1-51 (71)
496 PRK13169 DNA replication intia 32.8 2.5E+02 0.0055 26.8 8.2 55 626-680 4-58 (110)
497 PF05377 FlaC_arch: Flagella a 32.8 1.6E+02 0.0035 24.4 5.8 40 638-677 1-40 (55)
498 TIGR03017 EpsF chain length de 32.8 9.2E+02 0.02 28.8 28.3 229 471-711 144-395 (444)
499 KOG2010 Double stranded RNA bi 32.6 4.7E+02 0.01 29.6 11.2 86 535-648 119-207 (405)
500 PF14073 Cep57_CLD: Centrosome 32.5 5.9E+02 0.013 26.5 20.8 173 513-685 3-175 (178)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-138 Score=1262.16 Aligned_cols=1009 Identities=31% Similarity=0.433 Sum_probs=743.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||++.|.+||++|.+.++||.|.+|+|..||..+||||||+||++||+|||++||.+|+.++...+|||||||||||+|
T Consensus 362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999887767899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCCCCChHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~-~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.|||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998 2459999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccC
Q 001214 160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK 237 (1122)
Q Consensus 160 ~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~ 237 (1122)
|.+||++.+. +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|++.||+..... .+
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~-~~ 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENI-ES 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhc-cc
Confidence 9999999886 56899999999999999999999999999999999999999999999999999999999954333 33
Q ss_pred CCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHH
Q 001214 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1122)
Q Consensus 238 ~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ 317 (1122)
.++++|+|+.|+.||..||++|++|+||||||||||.+|+|+.||+.+|++|||||||+|+|||+|+|||+||+|++|+.
T Consensus 601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~ 680 (1463)
T COG5022 601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ 680 (1463)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCC-----CCcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHHHHHHHhhhccc
Q 001214 318 RFGILASKVLD-----GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS 390 (1122)
Q Consensus 318 ry~~l~~~~~~-----~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~ 390 (1122)
||++|.|.... ...|.+.+|..||..+.+| .||+|+||||||+|+++.||.+|+..++.+++.||++|||++.
T Consensus 681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~ 760 (1463)
T COG5022 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL 760 (1463)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997432 2247899999999998776 6999999999999999999999999999999999999999999
Q ss_pred chhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 001214 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR 469 (1122)
Q Consensus 391 R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ-s~~Rg~~aR~~~~~~~ 469 (1122)
|++|.+..+.+..+|...+|+..++....--...+++.+|..||....|+.|...-..+..+| ..++....+.......
T Consensus 761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~ 840 (1463)
T COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999877766666799999999999999999999999999999 7777777777666777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR 549 (1122)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~ 549 (1122)
..++++.+|++||.+..+++|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.-...
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~ 920 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI 920 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999776652111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh---hHHHHHHHHHHHHHHHHHHH
Q 001214 550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS 626 (1122)
Q Consensus 550 ~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~kLe~~l~ 626 (1122)
.+..+ +.+....|++-+...+ +++.+.. ....+..+.....+|++...
T Consensus 921 ~~~~~---k~e~~a~lk~~l~~~d--------------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 971 (1463)
T COG5022 921 ENLEF---KTELIARLKKLLNNID--------------------------LEEGPSIEYVKLPELNKLHEVESKLKETSE 971 (1463)
T ss_pred hhhHH---HHHHHHHHHHHhhccc--------------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 11100 0011112211111100 0000000 11133444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhhcccCcccccccccCC
Q 001214 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA 703 (1122)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e---~~~l~q~~~~~~~~~~~~~~~~~ 703 (1122)
+....+...+....+......+ +....+.+..+..+...+++....+++. +..+....-..+ .....++.
T Consensus 972 ~~~~~~k~~~~~~~~~~~~~~e----l~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022 972 EYEDLLKKSTILVREGNKANSE----LKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred HHHHHHHHhhHHHHhcccHHHH----HHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence 3332222222222222111111 1111111111111112222222222222 222222100000 00000000
Q ss_pred ccc-cccCC-CCcccccccCCCCCCCCCCccCCCcchHHHHhhhhHhhhhcHHHHHHhhh-hcCCCC-CCCCchHHHH-H
Q 001214 704 PAT-QSLEN-GHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTI-Y 778 (1122)
Q Consensus 704 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~~~i~-~~~~~~-~~~p~~A~il-~ 778 (1122)
... ....+ ..+......... ....... +.. ..-....+..+....+++.+. .++.+. ...+.||..+ +
T Consensus 1045 ~~~~~~~~~~~~~~~~~l~~~~----~~l~~~r-~~~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1117 (1463)
T COG5022 1045 LKPLQKLKGLLLLENNQLQARY----KALKLRR-ENS--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117 (1463)
T ss_pred cCcccchhhhhhHHHHHhhhhH----hhhhhcC-ccc--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHH
Confidence 000 00000 000000000000 0000000 000 000001233344455555544 322221 1222345443 3
Q ss_pred HHHhhhcc-chhhhhHHHHHHHHHHHHhhcc---cCCCcchhhHHHhHHHHHHHHHHhhhhcCCCCCCCCCCCCCccchh
Q 001214 779 KCLLHWKS-FEAERTSVFDRLIQMIGSAIEN---EDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLF 854 (1122)
Q Consensus 779 ~c~~~~~~-~~~~~~~ll~~i~~~i~~~i~~---~~d~~~l~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~ 854 (1122)
...-+|+. +..+...++...+..++.+... .+-...+.||.+|...+++.--- ....+++ .+.
T Consensus 1118 ~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~ 1184 (1463)
T COG5022 1118 IVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPF-------AALSEKR------LYQ 1184 (1463)
T ss_pred HHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCch-------hhcchhh------hhH
Confidence 33446665 5556666777666666666442 23445678999999887631000 0000000 000
Q ss_pred hhhhcccCCCCcchhhhhHHhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----h---cCCCC
Q 001214 855 GRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLC----I---QAPRT 927 (1122)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~l~~~~~~iy~~l~~~~~~~l~~~L~~~----i---~~~~~ 927 (1122)
..+-+ +.+. .. ... | -..+..+..+..++|+.|.... .+.+++... . ..+++
T Consensus 1185 ~~~~d-~~~~----~s-----~s~---v------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~ 1243 (1463)
T COG5022 1185 SALYD-EKSK----LS-----SSE---V------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGF 1243 (1463)
T ss_pred hhhhc-cccc----cc-----HHH---H------HHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccc
Confidence 00000 0000 00 111 1 1344667777888888887654 233333211 1 11111
Q ss_pred CCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHh
Q 001214 928 SKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVK 1007 (1122)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr 1007 (1122)
.. +...+..+...+.++++.+++.+.++++.+.+.+.+..-.+.++.-++|+.+||.|.++..-..|+.|-++.
T Consensus 1244 ~~------~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~ 1317 (1463)
T COG5022 1244 NN------LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVN 1317 (1463)
T ss_pred cc------hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhccccc
Confidence 10 112222455678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHhhcccccccccHHHhHHHHHHHhHhhhcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCH
Q 001214 1008 AGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSP 1087 (1122)
Q Consensus 1008 ~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e~~~v~~ 1087 (1122)
+|.+.+.+||+.+| ...+..+|++++||++.+++.+++..+++++ .+.|.+|+|.|+.+|+.+|.|.++|+ ++|.
T Consensus 1318 ~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~l~k 1392 (1463)
T COG5022 1318 YNSEELDDWCREFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-NLPK 1392 (1463)
T ss_pred ccchhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-CChH
Confidence 99999999999988 3556689999999999999987777767666 69999999999999999999999985 9999
Q ss_pred HHHHHHHHHhh
Q 001214 1088 NVISSMRILMT 1098 (1122)
Q Consensus 1088 ~~i~~l~~~~~ 1098 (1122)
++..+|.+...
T Consensus 1393 e~~~~~~a~~~ 1403 (1463)
T COG5022 1393 EILKKIEALLI 1403 (1463)
T ss_pred HHHHHHhhhhh
Confidence 99966654443
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=4.7e-107 Score=997.11 Aligned_cols=416 Identities=33% Similarity=0.540 Sum_probs=392.7
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.|++|++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f 475 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVF 475 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887667789999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f 555 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKF 555 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCC-CCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCC
Q 001214 161 AQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1122)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1122)
++||++++++|++|.+|+. ....|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+.......+..
T Consensus 556 ~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 635 (821)
T PTZ00014 556 VSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA 635 (821)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccccccc
Confidence 9999999999999999985 468999999999999999999999999999999999999999999999987543333334
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHHHH
Q 001214 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1122)
Q Consensus 240 ~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ry 319 (1122)
+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+++|||+|++|.+|+.||
T Consensus 636 k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY 715 (821)
T PTZ00014 636 KGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQF 715 (821)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCC-CcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhhhhcccc---hhHHHHHHHhhhcccchh
Q 001214 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASIIQRKVRSYLSRKN 393 (1122)
Q Consensus 320 ~~l~~~~~~~-~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r~~~l~---~~a~~IQ~~~R~~~~R~~ 393 (1122)
++|.+..... ..|.++.|+.||..+++ ++|++|+||||||+|+++.||.+|.+++. .+++.||++||||++|++
T Consensus 716 ~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 716 KYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRK 795 (821)
T ss_pred HhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998875443 35899999999999876 48999999999999999999998887764 578999999999999999
Q ss_pred hhchhhhhHhhhhHhhhhccccc
Q 001214 394 YIMLRRSAIHIQAACRGQLARTV 416 (1122)
Q Consensus 394 y~~~r~a~i~iQ~~~Rg~lar~~ 416 (1122)
|.+++.+++.||+++|||++++.
T Consensus 796 ~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 796 VRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-103 Score=940.95 Aligned_cols=457 Identities=61% Similarity=0.961 Sum_probs=439.9
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ-DPNSKSLIGVLDIYGFES 79 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~ 79 (1122)
||+++.|..|||.|.+.++++.|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||+
T Consensus 301 g~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEs 380 (862)
T KOG0160|consen 301 GCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFES 380 (862)
T ss_pred CCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccc
Confidence 8999999999999999999999999999999999999999999999999999999999987 455689999999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|+.|+|.||++|+|+|++ |.||++||||+|++|.++|++
T Consensus 381 F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~ 459 (862)
T KOG0160|consen 381 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDET 459 (862)
T ss_pred cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCC
Q 001214 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1122)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1122)
|..||++.+.+|+.|.+|+.++..|+|.||||+|+|++.||++||+|+|++++.+++..|+++|+..+|++...++.+.+
T Consensus 460 ~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~ 539 (862)
T KOG0160|consen 460 LAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS 539 (862)
T ss_pred HHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665555566
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHHHH
Q 001214 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1122)
Q Consensus 240 ~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ry 319 (1122)
+++||+++|+.+|..||.+|++|+||||||||||+.+.|+.||+.+|++|||+|||||+|||+++|||.|++|.||+.||
T Consensus 540 ~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~ 619 (862)
T KOG0160|consen 540 KRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRY 619 (862)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHhhcCCCCcccccceeeeccccccchhhhhhcccchhHHHHHHHhhhcccchhhhchhh
Q 001214 320 GILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRR 399 (1122)
Q Consensus 320 ~~l~~~~~~~~~d~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~R~~y~~~r~ 399 (1122)
++|+| .. ...|++..|+.||+..+++.||+|+|||||++|+++.||.+|..++..+++.||+.+|+|+.|+.|..+|.
T Consensus 620 ~~L~~-~~-~~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~ 697 (862)
T KOG0160|consen 620 GILMP-ND-SASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS 697 (862)
T ss_pred hhcCc-ch-hcccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 33 23466999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001214 400 SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1122)
Q Consensus 400 a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~ 463 (1122)
+++.||+++||+++|+ ..+ +..||+.||+.||+|..|+.|..++.+++.+|+.+|++.+|.
T Consensus 698 ~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 698 AVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 334 778999999999999999999999999999999999999887
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.8e-101 Score=979.81 Aligned_cols=659 Identities=34% Similarity=0.535 Sum_probs=530.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
||++..|.++|+++++.++++.+.+..+.+|+..+..++||++|+|||.|+|.+||.+|.......+|||||||+|||+|
T Consensus 382 g~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIf 461 (1930)
T KOG0161|consen 382 GINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIF 461 (1930)
T ss_pred CCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999877778899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
+.||||||||||+||||||+||+|+|.+||++|.+|||.|++|+| .|-+||||||+++ .||+++|||||++|++||.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp-~Gi~slLdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKP-MGILSLLDEECVVPKATDKT 540 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhch-hhHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999 8999999999985 59999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCC--CCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh---
Q 001214 160 FAQKLYQTF-KNHKRFSKPK--LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--- 233 (1122)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--- 233 (1122)
|++||...| |+||.|.+|+ ....+|.|.||||+|.|++.||++||+|++++.++.+|+.|++++|+.||.+...
T Consensus 541 f~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~ 620 (1930)
T KOG0161|consen 541 FLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA 620 (1930)
T ss_pred HHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch
Confidence 999999999 8999999997 5578999999999999999999999999999999999999999999999987321
Q ss_pred --------hccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhC
Q 001214 234 --------ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1122)
Q Consensus 234 --------~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g 305 (1122)
..++++.|.||+..++.+|+.||++|++|+|||||||.||+.|.|+.+|.++|+.||||.||||+|||++.|
T Consensus 621 ~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~G 700 (1930)
T KOG0161|consen 621 AAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQG 700 (1930)
T ss_pred hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhh
Confidence 123445678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhhccCCC-CcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHHHHH
Q 001214 306 YPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1122)
Q Consensus 306 ~p~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ 382 (1122)
||.|++|.+|..||.++.|...++ ..|.+.+|..|+..+..| -|++|.||||||+|+++.||.+|+..+....+.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999666654443 467799999999988654 69999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhch---hhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001214 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1122)
Q Consensus 383 ~~~R~~~~R~~y~~~---r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~ 459 (1122)
+.+|||++|+.|.+. ..|+.+||+++|.|+. .|.|.|++.|.++++.+.....-....
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~-------------------lr~w~W~~Lf~kvkPLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK-------------------LRTWPWWRLFTKVKPLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999887 4789999999999976 566888888888887654333222211
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 460 AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEE 539 (1122)
Q Consensus 460 ~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~e 539 (1122)
..-.++...+...... ...|.-+... ..++......+|.. ...+-....++......+.+.+..+|..+.+
T Consensus 842 ~~~~e~~~l~~~l~~~---e~~~~ele~~-~~~~~~e~~~l~~~-----l~~e~~~~~~aee~~~~~~~~k~~le~~l~~ 912 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKS---ESKRKELEEK-LVKLLEEKNDLQEQ-----LQAEKENLAEAEELLERLRAEKQELEKELKE 912 (1930)
T ss_pred HhHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100000 0000000000 11111111111110 1112223445667777888889999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------
Q 001214 540 LTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEV------------- 603 (1122)
Q Consensus 540 l~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~------------- 603 (1122)
++.+++.+++....++..++ +++..+++.+++++..+.+++.++.....+++.+.+++..+++.
T Consensus 913 ~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe 992 (1930)
T KOG0161|consen 913 LKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEE 992 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777776555 56777888888888888888777666666666555544332221
Q ss_pred --------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q 001214 604 --------PVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL------------------------- 650 (1122)
Q Consensus 604 --------~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~------------------------- 650 (1122)
...+++++..+.+.+.+|++.+++++..++.......++++...++.
T Consensus 993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen 993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22267778888888889999888888888755554444443333322
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 651 ----------KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 651 ----------~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
.++++.+..+..+++.+++|+.+|.+|+++++..+...
T Consensus 1073 kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455556777777777777777777777777643
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.1e-98 Score=913.16 Aligned_cols=374 Identities=83% Similarity=1.313 Sum_probs=361.1
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
||++++|.++||+|++.+++|.+++++++++|..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f 380 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESF 380 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.||||||||||||||||++|++|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f 460 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETF 460 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCCC
Q 001214 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240 (1122)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~ 240 (1122)
++||++++++|++|.+|+.++..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+..+.+.++
T Consensus 461 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k 540 (674)
T cd01384 461 AQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540 (674)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999876554445557
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHHHHh
Q 001214 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFG 320 (1122)
Q Consensus 241 ~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ry~ 320 (1122)
++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.||+
T Consensus 541 ~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~ 620 (674)
T cd01384 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFG 620 (674)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCcchHHHHHHHHhhcCCCCcccccceeeeccccccchhhhhhccc
Q 001214 321 ILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVL 374 (1122)
Q Consensus 321 ~l~~~~~~~~~d~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r~~~l 374 (1122)
+|+|.......|.++.|+.||..+++++|++|+||||||+|+++.||.+|++++
T Consensus 621 ~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 621 ILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999987766678899999999999999999999999999999999999998764
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-97 Score=833.57 Aligned_cols=434 Identities=39% Similarity=0.666 Sum_probs=399.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-----PNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~ 75 (1122)
++.+++|+++||+|++.++||.+.+++|++||.++||||||+||+|||+|||.+||++|... ......|||||||
T Consensus 304 ~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiy 383 (1001)
T KOG0164|consen 304 SVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIY 383 (1001)
T ss_pred cCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEee
Confidence 47889999999999999999999999999999999999999999999999999999998532 1235789999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCC-
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPR- 154 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~- 154 (1122)
|||+|+.|||||||||||||||||.|++-++|.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHHHhcCCCCcCCCC-------CCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccc
Q 001214 155 STHETFAQKLYQTFKNHKRFSKPK-------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSL 227 (1122)
Q Consensus 155 ~~d~~~~~kl~~~~~~~~~~~~p~-------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~l 227 (1122)
.||.+|+++|.+.+++|++|..-. ++...|.|.||||+|+|++.||++||+|.+..|+..+|..|++|+++.|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~ 543 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSL 543 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHh
Confidence 699999999999999999997432 2346899999999999999999999999999999999999999999999
Q ss_pred cccchhhcc-CCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCC
Q 001214 228 FLPLAEESS-KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY 306 (1122)
Q Consensus 228 f~~~~~~~~-~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~ 306 (1122)
||....+-+ ...+++|+|++|+.|+..||++|.+-+|+||||||||+.+.|+.||...|.+|.+++|++|-+|++++||
T Consensus 544 fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgf 623 (1001)
T KOG0164|consen 544 FPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGF 623 (1001)
T ss_pred CCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhccc
Confidence 997533222 2237789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhhccCCC--CcchHHHHHHHHhhcCCC-Ccccccceeeecccc-ccchhhhhhcccchhHHHHH
Q 001214 307 PTRKPFDEFVDRFGILASKVLDG--SSDEVTACKRLLEKVGLE-GYQIGKTKVFLRAGQ-MADLDARRTEVLGRSASIIQ 382 (1122)
Q Consensus 307 p~r~~~~~F~~ry~~l~~~~~~~--~~d~~~~~~~il~~~~~~-~~~iG~tkVFlr~~~-~~~Le~~r~~~l~~~a~~IQ 382 (1122)
.+|.+|+.|+.||+++++..|+. ..+++++|..+++..+.. ++.+|+||||+|... +..||..|.+++...++.||
T Consensus 624 ahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQ 703 (1001)
T KOG0164|consen 624 AHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQ 703 (1001)
T ss_pred ccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987763 346799999999999875 899999999999754 67899999999999999999
Q ss_pred HHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Q 001214 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 444 (1122)
Q Consensus 383 ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~ 444 (1122)
+.||||++|.+|++|+.+++.|+ +||.+..+ .++..||+.+|+|..++.|.+
T Consensus 704 K~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 704 KAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 99999999999999999999999 77754332 467789999999999998864
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.2e-95 Score=889.87 Aligned_cols=369 Identities=51% Similarity=0.830 Sum_probs=348.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---PNSKSLIGVLDIYGF 77 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GF 77 (1122)
||++++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|++. .....+|||||||||
T Consensus 299 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GF 378 (691)
T cd01380 299 GVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGF 378 (691)
T ss_pred CCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcc
Confidence 79999999999999999999999999999999999999999999999999999999999876 456789999999999
Q ss_pred cccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCCh
Q 001214 78 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTH 157 (1122)
Q Consensus 78 E~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d 157 (1122)
|+|+.||||||||||||||||++||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td 457 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSD 457 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc
Q 001214 158 ETFAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1122)
Q Consensus 158 ~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1122)
++|++||++.++ +|+.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~ 537 (691)
T cd01380 458 ESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELAS 537 (691)
T ss_pred HHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccc
Confidence 999999999998 899999999888999999999999999999999999999999999999999999999997642110
Q ss_pred -----------------cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhh
Q 001214 236 -----------------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1122)
Q Consensus 236 -----------------~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1122)
....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||+|+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~ 617 (691)
T cd01380 538 SSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617 (691)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHH
Confidence 011356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhhh
Q 001214 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 299 iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
|||+++|||+|++|.+|+.||++|+|.......|.++.|+.||..+.. ++|++|+||||||+|+++.||++|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999998764456889999999999875 489999999999999999999876
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.4e-95 Score=885.96 Aligned_cols=369 Identities=42% Similarity=0.713 Sum_probs=348.9
Q ss_pred CCCHHHHHHHHhhceEeeCC----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRD----ETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~ 75 (1122)
|||+++|.++||+|++.+++ |.+++|+++++|..+||||||+||++||+|||.+||.+|.++ .....+|||||||
T Consensus 295 gv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIf 374 (674)
T cd01378 295 GVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIY 374 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecc
Confidence 79999999999999999998 999999999999999999999999999999999999999875 5567899999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCC-
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~-~~~Gil~lLdee~~~p- 153 (1122)
|||+|+.||||||||||||||||++||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++|
T Consensus 375 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~ 454 (674)
T cd01378 375 GFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454 (674)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh
Q 001214 154 RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1122)
Q Consensus 154 ~~~d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1122)
++||++|++||++++++|+++.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+....
T Consensus 455 ~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~ 534 (674)
T cd01378 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534 (674)
T ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999986433
Q ss_pred hccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChH
Q 001214 234 ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFD 313 (1122)
Q Consensus 234 ~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~ 313 (1122)
.. ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 535 ~~-~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~ 613 (674)
T cd01378 535 AD-SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFD 613 (674)
T ss_pred cc-ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHH
Confidence 22 22356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCC-CCcchHHHHHHHHhhcCCC--Ccccccceeeeccc-cccchhhhh
Q 001214 314 EFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARR 370 (1122)
Q Consensus 314 ~F~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~-~~~~Le~~r 370 (1122)
+|+.||++|+|.... ...|.++.|+.||..++++ +|++|+||||||+| +++.||..|
T Consensus 614 ~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 614 KFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999987532 3468899999999998764 89999999999998 688999876
No 9
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.6e-95 Score=884.94 Aligned_cols=370 Identities=44% Similarity=0.712 Sum_probs=348.2
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~ 79 (1122)
|||+++|.++||+|++.++||.+++|++++||..+||||||+||++||+|||.+||.+|.++ .....+||||||||||+
T Consensus 295 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~ 374 (671)
T cd01381 295 GVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFEN 374 (671)
T ss_pred CCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999764 45678999999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
|+.||||||||||||||||++|++|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 375 f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~ 454 (671)
T cd01381 375 FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQT 454 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCC-CCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc-cC
Q 001214 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-SK 237 (1122)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~ 237 (1122)
|++||++.+++|+.|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.+|+.....+ ..
T Consensus 455 f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~ 534 (671)
T cd01381 455 MLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAET 534 (671)
T ss_pred HHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccc
Confidence 99999999999999998874 46799999999999999999999999999999999999999999999998754211 12
Q ss_pred CCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHH
Q 001214 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1122)
Q Consensus 238 ~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ 317 (1122)
..+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||+|++|.+|+.
T Consensus 535 ~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ 614 (671)
T cd01381 535 RKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVE 614 (671)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHH
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCC--CcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhhh
Q 001214 318 RFGILASKVLDG--SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 318 ry~~l~~~~~~~--~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
||++|+|...+. ..|.++.|+.|++.+.+ ++|++|+||||||++++..||..|
T Consensus 615 rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 615 RYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999976532 34778899999998765 489999999999999999999876
No 10
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.6e-95 Score=888.23 Aligned_cols=370 Identities=44% Similarity=0.753 Sum_probs=347.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 308 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f 387 (693)
T cd01377 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIF 387 (693)
T ss_pred CCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
+.||||||||||||||||++|++|+|+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~ 467 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKT 467 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCc--CCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc--
Q 001214 160 FAQKLYQTFKNHKRF--SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-- 235 (1122)
Q Consensus 160 ~~~kl~~~~~~~~~~--~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-- 235 (1122)
|++||++.+++++.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+
T Consensus 468 ~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 547 (693)
T cd01377 468 FVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD 547 (693)
T ss_pred HHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc
Confidence 999999999999887 4455567899999999999999999999999999999999999999999999998643211
Q ss_pred --------cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCC
Q 001214 236 --------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1122)
Q Consensus 236 --------~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p 307 (1122)
.+.++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||
T Consensus 548 ~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp 627 (693)
T cd01377 548 GGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFP 627 (693)
T ss_pred cccccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCC
Confidence 112245899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhhccCC-CCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhh
Q 001214 308 TRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
+|++|.+|+.||++|+|...+ ...|.++.|+.||..++++ +|++|+||||||.+++..||.+|
T Consensus 628 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 628 NRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 999999999999999997643 3468899999999998774 89999999999999999999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=9e-95 Score=881.06 Aligned_cols=369 Identities=39% Similarity=0.675 Sum_probs=343.5
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||++++.+++|.+.+|+++++|..+||||||+||++||+|||.+||.+|.+. ....+||||||||||+|
T Consensus 296 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f 374 (677)
T cd01387 296 QISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDL 374 (677)
T ss_pred CCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999873 45679999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.||||||||||||||||++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||++|
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~ 454 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh------
Q 001214 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE------ 234 (1122)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~------ 234 (1122)
++|++..+++|+.|.+|+.+.+.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.+|+.....
T Consensus 455 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 534 (677)
T cd01387 455 LQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL 534 (677)
T ss_pred HHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999753210
Q ss_pred ---c--cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCc
Q 001214 235 ---S--SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTR 309 (1122)
Q Consensus 235 ---~--~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r 309 (1122)
+ ++..+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||+|
T Consensus 535 ~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r 614 (677)
T cd01387 535 GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVR 614 (677)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCcc
Confidence 0 01124579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhh
Q 001214 310 KPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 310 ~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
++|.+|+.||++|+|.......+.+..+..++..++++ +|++|+||||||.+++..||..|
T Consensus 615 ~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 615 LPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 99999999999999975443333345557888887654 79999999999999999999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.1e-94 Score=878.57 Aligned_cols=366 Identities=46% Similarity=0.796 Sum_probs=341.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~ 79 (1122)
|||+++|.++||++++.++||.++++++++||..+||||||+||++||+|||.+||.+|++.. ....+||||||||||+
T Consensus 298 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~ 377 (677)
T cd01383 298 GCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377 (677)
T ss_pred CCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999998753 3467999999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~ 457 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLT 457 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccc-----hh-
Q 001214 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPL-----AE- 233 (1122)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~- 233 (1122)
|++||++++++|+.|.+|+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +.
T Consensus 458 f~~kl~~~~~~~~~~~~~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~ 534 (677)
T cd01383 458 FANKLKQHLKTNSCFRGER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVV 534 (677)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhcccccc
Confidence 9999999999999998875 468999999999999999999999999999999999999999876 55432 00
Q ss_pred h-----ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCC
Q 001214 234 E-----SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1122)
Q Consensus 234 ~-----~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~ 308 (1122)
. ....++..||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||+++|||+
T Consensus 535 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 614 (677)
T cd01383 535 GPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPT 614 (677)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCc
Confidence 0 11123568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhh
Q 001214 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
|++|.+|+.||++|+|.... ..|++..|..||..++++ +|++|+||||||.|+++.||..|
T Consensus 615 R~~~~~F~~rY~~L~~~~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 615 RMTHQEFARRYGFLLLENIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cccHHHHHHHHHHhCccccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999997654 357889999999998764 89999999999999999999876
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=6e-94 Score=875.76 Aligned_cols=368 Identities=40% Similarity=0.647 Sum_probs=344.9
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP---NSKSLIGVLDIYGF 77 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GF 77 (1122)
|||+++|.++||++++.++||.+++|+++++|..+||+|||+||++||+|||++||.+|++.. ....+|||||||||
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GF 386 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGF 386 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCcc
Confidence 799999999999999999999999999999999999999999999999999999999998643 24689999999999
Q ss_pred cccCC-CchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCC
Q 001214 78 ESFKT-NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1122)
Q Consensus 78 E~f~~-NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~ 156 (1122)
|+|+. ||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+||
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhcc
Q 001214 157 HETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS 236 (1122)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~ 236 (1122)
|++|++||++.+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+.+..
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 546 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVF 546 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccc
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999976432211
Q ss_pred ---------CCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCC
Q 001214 237 ---------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1122)
Q Consensus 237 ---------~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p 307 (1122)
++.+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||++.|||
T Consensus 547 ~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp 626 (692)
T cd01385 547 RWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYS 626 (692)
T ss_pred ccccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCC
Confidence 11234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhhh
Q 001214 308 TRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRT 371 (1122)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~ 371 (1122)
+|++|.+|+.||++|+|... ...++.|+.||..++++ +|++|+||||||+++++.||..-.
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred ccccHHHHHHHHHHhCcccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 99999999999999998743 23467799999998775 899999999999999999987543
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=9.8e-94 Score=876.95 Aligned_cols=367 Identities=40% Similarity=0.656 Sum_probs=343.0
Q ss_pred CCCHHHHHHHHhhceEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~ 75 (1122)
|||+++|.++||+|++. ++|+.+++|++++||..+||+|||+||++||+|||.+||.+|..+ ....+|||||||
T Consensus 327 gv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIf 405 (717)
T cd01382 327 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIA 405 (717)
T ss_pred CCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEecc
Confidence 79999999999999998 789999999999999999999999999999999999999999765 356789999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~ 155 (1122)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++
T Consensus 406 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 406 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred ccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001214 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1122)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1122)
||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|++|++++|+
T Consensus 486 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~ 565 (717)
T cd01382 486 SDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLR 565 (717)
T ss_pred CHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHH
Confidence 9999999999999999988877542 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhc---c--CCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHH
Q 001214 226 SLFLPLAEES---S--KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300 (1122)
Q Consensus 226 ~lf~~~~~~~---~--~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~ir 300 (1122)
.||+...... . +..++.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+||
T Consensus 566 ~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vr 645 (717)
T cd01382 566 SLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLD 645 (717)
T ss_pred HHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHH
Confidence 9998643211 1 1125679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhh
Q 001214 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1122)
Q Consensus 301 i~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~ 369 (1122)
|+++|||+|++|.+|+.||+.|+|.... ..|++..|+.||..++++ +|++|+||||||+|+++.||++
T Consensus 646 i~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 646 LMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999987554 358899999999998774 8999999999999999999975
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.4e-93 Score=862.45 Aligned_cols=347 Identities=40% Similarity=0.707 Sum_probs=331.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----CCccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-----SKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~ 75 (1122)
|||+++|.++||+|++.++||.+++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+|||||||
T Consensus 302 gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~ 381 (653)
T cd01379 302 CIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIF 381 (653)
T ss_pred CCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEecc
Confidence 7999999999999999999999999999999999999999999999999999999999986532 35799999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~ 155 (1122)
|||+|+.||||||||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|
T Consensus 382 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 382 GFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred ccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc
Q 001214 156 THETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1122)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1122)
||++|++|++.+++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|
T Consensus 462 td~~~~~kl~~~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---------------- 524 (653)
T cd01379 462 TDQTLVEKFEDNLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---------------- 524 (653)
T ss_pred CHHHHHHHHHHhcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------
Confidence 99999999999885 5678899888889999999999999999999999999999999999887
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHH
Q 001214 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1122)
Q Consensus 236 ~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F 315 (1122)
+||+++|+.||+.||++|++|+||||||||||+.+.|+.||+..|++||||+||+|+|||+++|||+|++|.+|
T Consensus 525 ------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F 598 (653)
T cd01379 525 ------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANF 598 (653)
T ss_pred ------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCcchHHHHHHHHhhcCCCCcccccceeeeccccccchhhhh
Q 001214 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 316 ~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
+.||++|++.......+.++.|+.||..++.++|++|+||||||+++++.||++|
T Consensus 599 ~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 599 IRRYCFLAYRFEEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHHhccccccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999986544445789999999999999999999999999999999999875
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.5e-92 Score=867.61 Aligned_cols=371 Identities=53% Similarity=0.889 Sum_probs=352.1
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
||++++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 303 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f 382 (677)
T smart00242 303 GVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIF 382 (677)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887677899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~ 462 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTF 462 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCC-CCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCC
Q 001214 161 AQKLYQTFKNHKRFSKPK-LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1122)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~-~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1122)
++||++.+++|+.|.+|+ .....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+.......+..
T Consensus 463 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 542 (677)
T smart00242 463 LEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKK 542 (677)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccC
Confidence 999999999999999984 5668999999999999999999999999999999999999999999999987644333344
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHHHH
Q 001214 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1122)
Q Consensus 240 ~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ry 319 (1122)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|++||++.|||+|++|.+|+.||
T Consensus 543 ~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry 622 (677)
T smart00242 543 RFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRY 622 (677)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCC-CcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhhhh
Q 001214 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRT 371 (1122)
Q Consensus 320 ~~l~~~~~~~-~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r~ 371 (1122)
++|++..... ..|.++.|+.||..+++ ++|++|+||||||++++..||++|+
T Consensus 623 ~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 623 RVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999875432 34689999999999865 4899999999999999999999874
No 17
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.1e-90 Score=854.10 Aligned_cols=370 Identities=49% Similarity=0.819 Sum_probs=345.0
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
||++++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 296 gv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 375 (679)
T cd00124 296 GLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIF 375 (679)
T ss_pred CCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999887667889999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~ 455 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETF 455 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCC-CCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc----
Q 001214 161 AQKLYQTFKNHKRFSK-PKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES---- 235 (1122)
Q Consensus 161 ~~kl~~~~~~~~~~~~-p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---- 235 (1122)
++||++.+++|+.|.. ++.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+
T Consensus 456 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 535 (679)
T cd00124 456 LEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS 535 (679)
T ss_pred HHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc
Confidence 9999999999988644 44567899999999999999999999999999999999999999999999998642111
Q ss_pred -------cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCC
Q 001214 236 -------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1122)
Q Consensus 236 -------~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~ 308 (1122)
.+..+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||+++|||+
T Consensus 536 ~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~ 615 (679)
T cd00124 536 TGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615 (679)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCc
Confidence 1223678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhh
Q 001214 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
|++|.+|+.||++|++..........+.|..++..++++ +|++|+||||||++++..||.+|
T Consensus 616 R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred eeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 999999999999999876554333444499999988764 89999999999999999999865
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-91 Score=786.41 Aligned_cols=400 Identities=38% Similarity=0.663 Sum_probs=370.5
Q ss_pred CCCHHHHHHHHhhceEeeC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTR----DETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~ 75 (1122)
|||++.|++.||.|.+.+. .+.+.+||+++||.+.||||||+||.+||||||++||.+|... .....+|||||||
T Consensus 312 gi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIY 391 (1106)
T KOG0162|consen 312 GIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIY 391 (1106)
T ss_pred cCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEee
Confidence 7999999999999999863 5899999999999999999999999999999999999999743 3357889999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcC-CcchhhhhHhhhcCC-
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKK-PGGIIALLDEACMFP- 153 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~-~~Gil~lLdee~~~p- 153 (1122)
|||+|+.||||||||||.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||.| |.||+++||+.|.-.
T Consensus 392 GFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 392 GFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999974 679999999999854
Q ss_pred ---CCChHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCccccccccc
Q 001214 154 ---RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1122)
Q Consensus 154 ---~~~d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1122)
.|.|++|+++|...+++||+|.. ....|+|+||||+|+||++||.+||+|.|..|+++|++.|+++|++.||+.
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 46799999999999999999984 357899999999999999999999999999999999999999999999998
Q ss_pred chhhccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCcc
Q 001214 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1122)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~ 310 (1122)
..+.. +..+++|.|+..+.|.+.|++||..|.||||||||||+.|.|+.||...|++|+.|+|+-|-|||+++||.+|.
T Consensus 549 ~v~~d-skrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr 627 (1106)
T KOG0162|consen 549 NVDAD-SKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRR 627 (1106)
T ss_pred hhccc-ccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHH
Confidence 64433 34578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhccCC-CCcchHHHHHHHHhhcCC--CCcccccceeeeccc-cccchhhhhhcccchhHHHHHHHhh
Q 001214 311 PFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAG-QMADLDARRTEVLGRSASIIQRKVR 386 (1122)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~-~~~~Le~~r~~~l~~~a~~IQ~~~R 386 (1122)
.|+.|++||.+|.|..++ ...|.+++|+.||....+ ++||+|.||||++.. .+..||.+|+......|..||++||
T Consensus 628 ~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWR 707 (1106)
T KOG0162|consen 628 AFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWR 707 (1106)
T ss_pred HHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999998764 346999999999998765 589999999999974 4678999999999999999999999
Q ss_pred hcccchhhhchhhhhHhh
Q 001214 387 SYLSRKNYIMLRRSAIHI 404 (1122)
Q Consensus 387 ~~~~R~~y~~~r~a~i~i 404 (1122)
.|++|++|.++|+-+..+
T Consensus 708 rfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 708 RFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998755443
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.2e-89 Score=839.26 Aligned_cols=370 Identities=29% Similarity=0.455 Sum_probs=330.1
Q ss_pred CCCHHHHHHHHhhceEeeCCc-------------eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 001214 1 MCDAKALEDSLCKREIVTRDE-------------TITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKS 67 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~ 67 (1122)
||++++|.++|+++++.++++ .++.++++.+|..+||||||+||++||+|||.+||.+|.++.....
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~ 373 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIA 373 (767)
T ss_pred CCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 799999999999998776643 3345678999999999999999999999999999999988766678
Q ss_pred cccccccccccccCC------CchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCC-
Q 001214 68 LIGVLDIYGFESFKT------NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKP- 139 (1122)
Q Consensus 68 ~IgiLDi~GFE~f~~------NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~- 139 (1122)
+||||||||||+|+. |||||||||||||||||+||++||+.||+||.+|||+|+++.+ .||++|||||+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 999999999999984 8999999999999999999999999999999999999987666 79999999999865
Q ss_pred -------------cchhhhhHhhhcCCCCChHHHHHHHHHHhcCCCCcCCCC------CCCCCeEEEeeccc--eEEecc
Q 001214 140 -------------GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGD--VTYQTE 198 (1122)
Q Consensus 140 -------------~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~H~ag~--V~Y~~~ 198 (1122)
.|||++|||||++|++||++|++||++.+++|++|.++. .....|+|+||||+ |+|++.
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~ 533 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVT 533 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCC
Confidence 599999999999999999999999999999998887632 12468999999995 999999
Q ss_pred chhhhcchhh-hHHHHHHHhhcCCcccccccccchh-------------hcc----------C--------CCCCcchhH
Q 001214 199 LFLDKNKDYV-VAEHQALLSASKCSFVSSLFLPLAE-------------ESS----------K--------TSKFSSIGS 246 (1122)
Q Consensus 199 ~fl~kN~d~~-~~~~~~ll~~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~ 246 (1122)
||++||+|.+ +.+++++|++|++++|..||+.... ..+ + ..+.+||++
T Consensus 534 gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~ 613 (767)
T cd01386 534 GWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCV 613 (767)
T ss_pred CHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 9999999965 6899999999999999999964210 000 0 013458999
Q ss_pred HHHHHHHHHHHHhcCCCCeeeeecCCCCCCC----------------------CCcccchhhhhhhhccchhhhHHHHhh
Q 001214 247 RFKQQLQQLLETLSSSEPHYIRCVKPNNLLK----------------------PAIFENKNVLQQLRCGGVMEAIRISCA 304 (1122)
Q Consensus 247 ~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1122)
+|+.||+.||++|++|+||||||||||+.|. |+.||..+|++||||+||+|+|||+++
T Consensus 614 qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~ 693 (767)
T cd01386 614 QVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRL 693 (767)
T ss_pred HHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhc
Confidence 9999999999999999999999999999974 789999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhhccCC------CCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhh
Q 001214 305 GYPTRKPFDEFVDRFGILASKVLD------GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1122)
Q Consensus 305 g~p~r~~~~~F~~ry~~l~~~~~~------~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1122)
|||+|++|.+|+.||++|++...+ ...|++++|+.||..++++ +|++|+||||||.|+++.||..|
T Consensus 694 Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 694 GFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999999999999999986432 1358899999999998764 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.8e-85 Score=735.40 Aligned_cols=435 Identities=38% Similarity=0.630 Sum_probs=381.1
Q ss_pred CCCHHHHHHHHhhceEee-----CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIVT-----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~-----~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~ 75 (1122)
|+|..+|.-.||.|.+.+ +|-.|.+||-+.+|..+||||||+||++||||||.+||+++.. ..+..|||||||.
T Consensus 381 Gld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPF-e~St~fiGVLDiA 459 (1259)
T KOG0163|consen 381 GLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPF-EKSTFFIGVLDIA 459 (1259)
T ss_pred CCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccc-ccccceeEEEeec
Confidence 799999999999998865 3558899999999999999999999999999999999999965 3578999999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~ 155 (1122)
|||-|.+||||||||||||||||++||+.+++.|||.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+.
T Consensus 460 GFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~ 539 (1259)
T KOG0163|consen 460 GFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKP 539 (1259)
T ss_pred cceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001214 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1122)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1122)
|++.|....|..+++|-+...|+.+ ...|.|+||||.|.|++..|++||.|.+...+..|+..|++|++.
T Consensus 540 s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~ 619 (1259)
T KOG0163|consen 540 SYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLV 619 (1259)
T ss_pred chHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHH
Confidence 9999999999999988777777643 358999999999999999999999999999999999999999999
Q ss_pred cccccchhhccC--CC--CCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHH
Q 001214 226 SLFLPLAEESSK--TS--KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRI 301 (1122)
Q Consensus 226 ~lf~~~~~~~~~--~~--~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri 301 (1122)
.||++....+++ .+ ++-|||+.|+.+|..||+.|++|..|||||||||....|++||...++.||.|+|+...+++
T Consensus 620 sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~L 699 (1259)
T KOG0163|consen 620 SLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLEL 699 (1259)
T ss_pred HHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHH
Confidence 999985333221 12 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHH
Q 001214 302 SCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1122)
Q Consensus 302 ~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~ 379 (1122)
+..|||+|.+|.+.+.-|.-.+|..+. ..|++-.|+.+...+|++ +|+||.||||||.|.++..+++-..--...+-
T Consensus 700 Mq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~ 778 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLE 778 (1259)
T ss_pred HhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHH
Confidence 999999999999999999988887654 468999999999999987 89999999999999999998865555445544
Q ss_pred HHHHHhhhcccchhhhchhhhhHhhhhHhhhhcccccccc-ccccchhhhhHHHHHHHHHHHHHHHhhh
Q 001214 380 IIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYES-MRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1122)
Q Consensus 380 ~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~-~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1122)
.|+ .+-.|+.|.++.+...++..+-. .-.+ .-+..+++++|++.|||++|+++...-.
T Consensus 779 lv~-kVn~WLv~sRWkk~q~~a~sVIK---------LkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 779 LVA-KVNKWLVRSRWKKSQYGALSVIK---------LKNKIIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHH-HHHHHHHHhHHHHhhhhhhheee---------hhhHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 444 46677777777665443322111 0000 1133577889999999999988775443
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.6e-85 Score=819.60 Aligned_cols=359 Identities=51% Similarity=0.866 Sum_probs=318.7
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~ 79 (1122)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ...++||||||||||+
T Consensus 297 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~ 376 (689)
T PF00063_consen 297 GVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFEN 376 (689)
T ss_dssp TS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B--
T ss_pred CCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccc
Confidence 799999999999999999999999999999999999999999999999999999999998765 6789999999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChH
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHE 158 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~ 158 (1122)
|..||||||||||||||||++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||++|++||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~ 456 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDE 456 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HH
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcCCCC----CCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh
Q 001214 159 TFAQKLYQTF-KNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1122)
Q Consensus 159 ~~~~kl~~~~-~~~~~~~~p~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1122)
+|++++...+ ++|+.|.+|+ .+...|+|+||||+|+|++.||++||+|.++++++++|+.|+++||+.||.....
T Consensus 457 ~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 457 SFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred HHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccc
Confidence 9999999999 8899999886 3678999999999999999999999999999999999999999999999987542
Q ss_pred h---------------------ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhc
Q 001214 234 E---------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1122)
Q Consensus 234 ~---------------------~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~ 292 (1122)
. .....+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||..+|.+|||+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~ 616 (689)
T PF00063_consen 537 ATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRY 616 (689)
T ss_dssp ---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhh
Confidence 0 0011245899999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHhhCCCCccChHHHHHHHhhhhhccCCC----CcchHHHHHHHHhhcCC--CCcccccceeeec
Q 001214 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDG----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLR 359 (1122)
Q Consensus 293 ~gvle~iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~----~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr 359 (1122)
+||+|++++++.|||+|++|.+|++||++|+|..... ..+.++.|+.||..+++ ++|++|+||||||
T Consensus 617 ~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 617 SGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp TTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999976532 46899999999999987 5899999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=2.3e-52 Score=513.15 Aligned_cols=510 Identities=30% Similarity=0.373 Sum_probs=396.0
Q ss_pred CCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCccccccccccccc
Q 001214 2 CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN--SKSLIGVLDIYGFES 79 (1122)
Q Consensus 2 ~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~ 79 (1122)
++...|.+++|.++.+++||.+..++++++|..+|||+||.||++||.|||.+||..+.++.. ....||||||||||+
T Consensus 360 ~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~ 439 (1062)
T KOG4229|consen 360 IKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFEN 439 (1062)
T ss_pred cCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999976544 368899999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
|..|||||||||||||+||.+|++|||..||+||..|+|+|..|.|.||.+|+|+|..||.||+.+||||+.+|+++|.+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~t 519 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQT 519 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCC-CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhcc--
Q 001214 160 FAQKLYQTFKNHKRFSKPKLA-RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS-- 236 (1122)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~-~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-- 236 (1122)
++.|+..+++.+..+..|+.. .+.|+|.||||.|.|++.||++||+|+++.+.+.+++.|.+.++..++...+....
T Consensus 520 l~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~ 599 (1062)
T KOG4229|consen 520 LLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRW 599 (1062)
T ss_pred HHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcc
Confidence 999999999988777777654 57999999999999999999999999999999999999999998888765432110
Q ss_pred -----------------------CC-----C---------CCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCC
Q 001214 237 -----------------------KT-----S---------KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPA 279 (1122)
Q Consensus 237 -----------------------~~-----~---------~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~ 279 (1122)
+. + ...+++..++-++......|.+..+||.|||++|..-.+.
T Consensus 600 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~ 679 (1062)
T KOG4229|consen 600 FELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALE 679 (1062)
T ss_pred hhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhh
Confidence 00 0 1235666777788888888999999999999999999999
Q ss_pred cccch-hhhhhhhccchhhhHHHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCCCcccccceeee
Q 001214 280 IFENK-NVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFL 358 (1122)
Q Consensus 280 ~fd~~-~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~~~~iG~tkVFl 358 (1122)
.++.. .+..++..-|...+....+.|+..+..|.+++.+++...-.......-...+|..++...+.+.+..+.+.++.
T Consensus 680 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1062)
T KOG4229|consen 680 QGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLP 759 (1062)
T ss_pred hcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhccccc
Confidence 99988 89999999999999999999999999999988777633211111112235567778888788888888888887
Q ss_pred ccccccchhhhhhcccc--------------------------hhHHHHHHHhhhcccchhhhch----hhhhHhhhhHh
Q 001214 359 RAGQMADLDARRTEVLG--------------------------RSASIIQRKVRSYLSRKNYIML----RRSAIHIQAAC 408 (1122)
Q Consensus 359 r~~~~~~Le~~r~~~l~--------------------------~~a~~IQ~~~R~~~~R~~y~~~----r~a~i~iQ~~~ 408 (1122)
+.--...+.-.+.+... ..+..||+-++....+..+..+ -..++.+|..|
T Consensus 760 ~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 839 (1062)
T KOG4229|consen 760 RYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSY 839 (1062)
T ss_pred ccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhc
Confidence 65433322222111111 1223333333333222222211 12445555555
Q ss_pred hhhcccccccc--------------------------------------------------------------ccccch-
Q 001214 409 RGQLARTVYES--------------------------------------------------------------MRREAS- 425 (1122)
Q Consensus 409 Rg~lar~~~~~--------------------------------------------------------------~r~~~A- 425 (1122)
-|...+.++.. +..+..
T Consensus 840 t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 919 (1062)
T KOG4229|consen 840 TGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEAND 919 (1062)
T ss_pred hhhhccchheeccccccccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHH
Confidence 55333322211 000001
Q ss_pred --hhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 001214 426 --CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR-FRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQC 502 (1122)
Q Consensus 426 --Ai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~-~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~ 502 (1122)
+...|++++....++.+.++..+.+.+| +++...|+... ......++.-+|..|+.+..+..+...+++.+.+|.
T Consensus 920 ~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 997 (1062)
T KOG4229|consen 920 ELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQS 997 (1062)
T ss_pred HHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhc
Confidence 3345777777777788888888888888 66666665433 233445777788888888888888888888888888
Q ss_pred hhhHHHHHHHH
Q 001214 503 AWRGKVARREL 513 (1122)
Q Consensus 503 ~~R~~~ark~~ 513 (1122)
.+++..-+..+
T Consensus 998 ~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 998 PRSRPAYTMIF 1008 (1062)
T ss_pred ccccchhhhhH
Confidence 87776555443
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=100.00 E-value=1.4e-32 Score=317.10 Aligned_cols=309 Identities=18% Similarity=0.318 Sum_probs=244.1
Q ss_pred hhhhHhhhhcHHHHHHhhh-hcCCCCCCCCchHHHHHHHHhhhcc--chhhh----hHHHHHHHHHHHHhhccc-CCCcc
Q 001214 743 RSHIEHQHENVDALINCVA-KNLGYCNGKPVAAFTIYKCLLHWKS--FEAER----TSVFDRLIQMIGSAIENE-DDNDH 814 (1122)
Q Consensus 743 ~~l~e~~~~~~~~l~~~i~-~~~~~~~~~p~~A~il~~c~~~~~~--~~~~~----~~ll~~i~~~i~~~i~~~-~d~~~ 814 (1122)
+.-.|+..-.++-.+..++ .+.+.+.++.+|-|- |..-.|++. ++.++ ..|+.++++.++.+++++ ++-..
T Consensus 540 ~~si~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~ 618 (1629)
T KOG1892|consen 540 GASIEFRDSSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGA 618 (1629)
T ss_pred ccceecccCcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccch
Confidence 3444667677777777777 555555566666552 222334433 44444 899999999999999998 66679
Q ss_pred hhhHHHhHHHHHHHHHHhhhhcCCCCCCCCCCCCCccchhhhhhcccCCCCcchhhhhHHhhhHHhhhhccchhHHHHHH
Q 001214 815 MAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQ 894 (1122)
Q Consensus 815 l~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~ 894 (1122)
|+|||+|+++++||++++-..+ .+ .+.-+..
T Consensus 619 LaFWmANaSEflhfik~Dr~ls--------------------------------~~-----------------~~~aq~v 649 (1629)
T KOG1892|consen 619 LAFWMANASEFLHFIKQDRDLS--------------------------------RI-----------------TLDAQDV 649 (1629)
T ss_pred hHHhhcCHHHHHHHHHhccchh--------------------------------he-----------------ehhHHHH
Confidence 9999999999999998851111 11 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 001214 895 LAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQK 974 (1122)
Q Consensus 895 l~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q 974 (1122)
|...++.+|..|+.+++.+|++.+...+... ....+.++++|..|+.+|.+|+.|+|+..|+.|
T Consensus 650 la~~vq~aFr~LV~clqsel~~~~~afLden----------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQ 713 (1629)
T KOG1892|consen 650 LAHLVQMAFRYLVHCLQSELNNYMPAFLDEN----------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQ 713 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------cccCccccchHHHhHHHHHHHHHhccchHHHHH
Confidence 6667899999999999999998887665311 122346789999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhHhhhcc--CCCCCccchhHHhhchHHHHHHHhhcccccccccHHHhHHHHHHHhHhhhcccccCCH
Q 001214 975 IFTQTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISY 1052 (1122)
Q Consensus 975 ~f~qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~ 1052 (1122)
+|+|||+|||+++||+|+.. ..+|+--||.-|++.|..||.||+.+|++.+.+ |||..|+||++||+++|....|+
T Consensus 714 LfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi 791 (1629)
T KOG1892|consen 714 LFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDI 791 (1629)
T ss_pred HHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhH
Confidence 99999999999999999998 689999999999999999999999999777666 99999999999999998777777
Q ss_pred HHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhhccCCC---CC--CCccccccCccceeee
Q 001214 1053 DEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND---AT--SNSFFVKKKKFIVVIV 1121 (1122)
Q Consensus 1053 ~~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l~~~~~~~~~~---~~--~~~ll~D~~~~~p~~~ 1121 (1122)
..+ ...|++||+.|+.+||.+|++|+.|+ ++|.+++..+..+....... +| --+|--+++..+||.|
T Consensus 792 ~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLl 863 (1629)
T KOG1892|consen 792 PNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLL 863 (1629)
T ss_pred Hhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceee
Confidence 777 79999999999999999999999996 99999999997665543221 11 1235557777777765
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.95 E-value=7.1e-29 Score=234.56 Aligned_cols=105 Identities=35% Similarity=0.643 Sum_probs=87.8
Q ss_pred HHHHHHHHhHHHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccccHHHhHHHHHHHhHhhhcccccCCHH
Q 001214 974 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYD 1053 (1122)
Q Consensus 974 Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~ 1053 (1122)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|++. .++++|.|++||++|||++|++..|.+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~--~~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEE--AAEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTT--H-HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 899999999999999999999999999999999999999999999999432 278999999999999999765555554
Q ss_pred HHHhccCcCCCHHHHHHHHhccccCCCC
Q 001214 1054 EITNDLCPILSVQQLYRICTLYWDDNYN 1081 (1122)
Q Consensus 1054 ~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e 1081 (1122)
.+ +++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 45 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.04 E-value=1.4e-06 Score=115.55 Aligned_cols=369 Identities=15% Similarity=0.145 Sum_probs=177.3
Q ss_pred hhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH----H-HHHH
Q 001214 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET----F-AQKL 164 (1122)
Q Consensus 90 iNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~----~-~~kl 164 (1122)
.++|-+-+....+..+|.. ...+...+++|+ .+-..+|.+++-...-||.. .|=+. | .+||
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkL 478 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKL 478 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHH
Confidence 7888888888777777754 677888899987 45556666665533222222 11111 1 2344
Q ss_pred HHHhcCCCCcCCCC----CCCCCeEEEeeccceEEeccchhhhcchh--hhHHHHHHHhhcCCcccccccccchhhccCC
Q 001214 165 YQTFKNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDY--VVAEHQALLSASKCSFVSSLFLPLAEESSKT 238 (1122)
Q Consensus 165 ~~~~~~~~~~~~p~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~--~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~ 238 (1122)
.+-| +|..|+.-. --.-.++.-||+-+- =.+.+-|+|=... +-++-.-+..+|...|+..|+...- .+.
T Consensus 479 QqfF-nh~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~ 553 (1930)
T KOG0161|consen 479 QQFF-NHHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKH 553 (1930)
T ss_pred Hhhh-cchhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccC
Confidence 4433 455554311 012356666773221 1222333332211 1111111223344455554443321 112
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHHH
Q 001214 239 SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDR 318 (1122)
Q Consensus 239 ~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~r 318 (1122)
++|.... ......-+....-+.+ |+|.-+|-..++..-....|+.+|++++ .+.|...-.| +..+..+..+
T Consensus 554 ~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~ 624 (1930)
T KOG0161|consen 554 PKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKG 624 (1930)
T ss_pred ccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhh
Confidence 2222211 2233344444444444 9999999999988888999999999999 8888776555 6666666666
Q ss_pred HhhhhhccCCC-----CcchHHHHHHHHhhcCCCCcccccceeee---cccc---ccchhhhhhcccchhHHHHHHHhhh
Q 001214 319 FGILASKVLDG-----SSDEVTACKRLLEKVGLEGYQIGKTKVFL---RAGQ---MADLDARRTEVLGRSASIIQRKVRS 387 (1122)
Q Consensus 319 y~~l~~~~~~~-----~~d~~~~~~~il~~~~~~~~~iG~tkVFl---r~~~---~~~Le~~r~~~l~~~a~~IQ~~~R~ 387 (1122)
+.. ....-.+ +.-.+.....++..+.-+...|=+--|+. ++|. ...|.++|..-+-. ++.|.+ .|
T Consensus 625 ~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLE-gIRicR--~G 700 (1930)
T KOG0161|consen 625 GEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLE-GIRICR--QG 700 (1930)
T ss_pred hhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHH-HHHHHH--hh
Confidence 654 2111111 01123333344443322222211111111 1121 12334444332222 223322 46
Q ss_pred cccchhhhchhhhhHhhhhHh--hhhccc-----ccccccc-------ccchhhhhHHHHHHHHHHHHHHHhhhHHHHHH
Q 001214 388 YLSRKNYIMLRRSAIHIQAAC--RGQLAR-----TVYESMR-------REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ 453 (1122)
Q Consensus 388 ~~~R~~y~~~r~a~i~iQ~~~--Rg~lar-----~~~~~~r-------~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ 453 (1122)
|-.|..|...+.-.-.+.... .|+..- +.+..+. -...=+...+-+-+..--.+-..+..-++.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544332111111111 111110 0000000 00000111112222333333344555678889
Q ss_pred HHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHH
Q 001214 454 TGMRGMAARNELRFRR-QTRASILIQSHCRKYLARLHY 490 (1122)
Q Consensus 454 s~~Rg~~aR~~~~~~~-~~~aa~~IQ~~~R~~~~r~~~ 490 (1122)
+.+||+++|+.+..+. +..|+.+||+..|.|...+.|
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999987644 446778899999998776654
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.31 E-value=2.1e-06 Score=105.80 Aligned_cols=85 Identities=39% Similarity=0.522 Sum_probs=80.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Q 001214 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCA 503 (1122)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~ 503 (1122)
.+++.||+.+|+|..|+.|.++|.+++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+.
T Consensus 674 ~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 674 AAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSG 750 (862)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999998 333 7789999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 001214 504 WRGKVARR 511 (1122)
Q Consensus 504 ~R~~~ark 511 (1122)
+|++.+|.
T Consensus 751 ~r~~~~r~ 758 (862)
T KOG0160|consen 751 VRAMLARN 758 (862)
T ss_pred HHHHHhcc
Confidence 99999998
No 27
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.26 E-value=1.1e-06 Score=108.03 Aligned_cols=120 Identities=26% Similarity=0.291 Sum_probs=77.6
Q ss_pred cccchhHHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccc--------cchhhhhHHHHHHHHHHHHHH
Q 001214 372 EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRR--------EASCLRIQRDLRMYLAKKAYK 443 (1122)
Q Consensus 372 ~~l~~~a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~--------~~AAi~IQ~~~R~~~~rk~y~ 443 (1122)
+....++..||.++|+|..|+.|..+|.-++.||+.+||+..|+.|.++-. -.++.++|+.+|||..+....
T Consensus 807 r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 807 RSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred ccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 344578899999999999999999999999999999999999988876441 024445555555555555555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001214 444 DMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYM 491 (1122)
Q Consensus 444 ~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~ 491 (1122)
+.-.+++.+|..+|-+..-++....+.++|++.||+.+|.+.++..|+
T Consensus 887 ~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 887 EQETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555555555555443333333444445555555555555554443
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.06 E-value=0.0009 Score=85.65 Aligned_cols=88 Identities=23% Similarity=0.166 Sum_probs=69.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhh-h
Q 001214 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ-C 502 (1122)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ-~ 502 (1122)
.+++.||+.|||+..|++|.+..+.+..+|...+|+..++......-..++..+|..|+....|..|+.....+..+| .
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~ 825 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888888888888888776665556678888888888888888888888888888 4
Q ss_pred hhhHHHHHH
Q 001214 503 AWRGKVARR 511 (1122)
Q Consensus 503 ~~R~~~ark 511 (1122)
.+|....+.
T Consensus 826 i~~~~~~~~ 834 (1463)
T COG5022 826 IKREKKLRE 834 (1463)
T ss_pred HHHHHHHhH
Confidence 555554443
No 29
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.97 E-value=3.4e-06 Score=106.61 Aligned_cols=214 Identities=16% Similarity=0.119 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHHHHhhhh
Q 001214 244 IGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILA 323 (1122)
Q Consensus 244 v~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ry~~l~ 323 (1122)
....+......++..+....|.|++|++-|..+....|+...|..|+++.|+++..++...+++..+++.+|...+.+..
T Consensus 791 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~ 870 (1062)
T KOG4229|consen 791 PLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGL 870 (1062)
T ss_pred cccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccC
Confidence 33456677788999999999999999999988888999999999999999999999999999999999999999999887
Q ss_pred hccCCCCcchHHHHHHHHhhc--CCCCcccccceeeeccccccchhh-hhhcccchhHHHHHHHhhhcccchhhhchhhh
Q 001214 324 SKVLDGSSDEVTACKRLLEKV--GLEGYQIGKTKVFLRAGQMADLDA-RRTEVLGRSASIIQRKVRSYLSRKNYIMLRRS 400 (1122)
Q Consensus 324 ~~~~~~~~d~~~~~~~il~~~--~~~~~~iG~tkVFlr~~~~~~Le~-~r~~~l~~~a~~IQ~~~R~~~~R~~y~~~r~a 400 (1122)
|.... .........+ +.++++.|..++|+...-...++. +..+....-+...|++++....++.|.++..+
T Consensus 871 ~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 944 (1062)
T KOG4229|consen 871 PETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEG 944 (1062)
T ss_pred Cccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcch
Confidence 73211 1111222222 446899999999998766544432 22222221256779999999999999999999
Q ss_pred hHhhhhHhhhhcccccccc-ccccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001214 401 AIHIQAACRGQLARTVYES-MRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNEL 465 (1122)
Q Consensus 401 ~i~iQ~~~Rg~lar~~~~~-~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~ 465 (1122)
.+.+| |++++.|+.... .....+|+-+|..|+.+..+..+.-.+.+.+.+|..+++...+..+
T Consensus 945 ~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 945 SVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 99999 888888875552 2344578899999999999999999999999999998887665554
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.94 E-value=0.014 Score=71.01 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 521 RETGALQAAKNKLEKQVEELTWRLQ---LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1122)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~---~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~ 584 (1122)
.+...+++.+.+....+.+....++ .++++..+..+....|++.+++++++|+..++-+.++.+
T Consensus 290 ~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 290 KEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555444444443333 445555555556667888888888888877776665543
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.76 E-value=3.8e-05 Score=95.00 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=93.4
Q ss_pred hhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHH
Q 001214 399 RSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF----------SAVCIQTGMRGMAARNELRFR 468 (1122)
Q Consensus 399 ~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~----------a~~~iQs~~Rg~~aR~~~~~~ 468 (1122)
.++..||..+|||..|+.+--.| .-++.||+.+|||..|+.|.++-. ++..+|+.+||+..|...+..
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 46788999999999998888777 458899999999999999987643 455678888888777665443
Q ss_pred HhhhhHHHHHHHHHHHHHH--HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHH
Q 001214 469 RQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLKM 518 (1122)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r--~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~ 518 (1122)
..|++.||...|.|..- ..|.++.++++.||+.+|...++.+++++..
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34889999999999887 6678889999999999999988877766553
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0096 Score=71.08 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEET-------SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~-------~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
++..+..|+.+++.|..++.++..++..+ +.+.+++.+..+....++.+|+..++++++.+..|--|
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44444444444444444444444433333 22233333333333334444444444444444444333
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.52 E-value=0.026 Score=70.41 Aligned_cols=107 Identities=12% Similarity=0.213 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVV-EELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1122)
Q Consensus 565 L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~-~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1122)
++.+..+||.++..+..++....++...+..+...+. +. .+-.++.+-|-..|..++++...||..+..--
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr--------~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt 614 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR--------KYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5555666666666666665555454444443321110 00 11122333344444444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 644 ~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+.++-..|-++. ++++.++..+...+.|+..|++
T Consensus 615 riKldLfsaLg~ak-------rq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 615 RIKLDLFSALGDAK-------RQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444 4444444444444455555554
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.17 Score=60.92 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=16.7
Q ss_pred cCCCCCccchhHHhhchHHHHHHHh
Q 001214 994 RRECCTFSNGEYVKAGLAELELWCC 1018 (1122)
Q Consensus 994 r~~~cs~s~G~qIr~nls~Le~W~~ 1018 (1122)
.++-.-|--|.=+.-+=-+.--|+=
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWFP 1032 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWFP 1032 (1118)
T ss_pred ecCCCccchhhHhhcCCcccccccc
Confidence 4567778888777666666656654
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.35 E-value=0.039 Score=55.07 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1122)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~ 584 (1122)
.........++.++.++..+.. .+..++..|+..+..++.+++.++..+.
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777766655 5667888888899999888888877764
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.32 E-value=0.8 Score=58.29 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.+..+..+.+..++.|+.+++.++..+..+..+..+...++...+++....+.++..++.+++.-..++..++.
T Consensus 389 ~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 389 NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666666666666666666666666777777777777777766665
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.54 Score=59.84 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHhHhhhcccccCCHHHHHhccC---cCCCHHHHHHHHhccccCC
Q 001214 1029 WDELKHIRQAVGFLVIHQKYRISYDEITNDLC---PILSVQQLYRICTLYWDDN 1079 (1122)
Q Consensus 1029 ~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c---~~Ls~~Qi~~il~~Y~~d~ 1079 (1122)
.+.|.|..+-+.|-+.| ++.+...| ..+- -.||+.=|.-.|.+|+|..
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPTP 1219 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPTP 1219 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCCC
Confidence 56788888888888887 66666655 2222 3689999999999999853
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.28 E-value=0.084 Score=63.18 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+..++......+.++.+++....+|+..+..+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444433
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.22 E-value=0.67 Score=63.04 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHhhc
Q 001214 1084 SVSPNVISSMRILMTE 1099 (1122)
Q Consensus 1084 ~v~~~~i~~l~~~~~~ 1099 (1122)
.+++.-...+..++.+
T Consensus 1108 ~ld~~~~~~~~~~l~~ 1123 (1164)
T TIGR02169 1108 FLDGVNVERVAKLIRE 1123 (1164)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555554
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.12 E-value=0.074 Score=66.52 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~ 642 (1122)
.+...|+.|..+|+.++...++.+..+|.+..++
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665555555555433
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.11 E-value=0.78 Score=62.38 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.7
Q ss_pred HHHHhhc
Q 001214 338 KRLLEKV 344 (1122)
Q Consensus 338 ~~il~~~ 344 (1122)
..++...
T Consensus 123 ~~~l~~~ 129 (1164)
T TIGR02169 123 HDFLAAA 129 (1164)
T ss_pred HHHHHHc
Confidence 3344333
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.00 E-value=0.25 Score=53.22 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1122)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~ 660 (1122)
...+...|+.++..++.....|+.++.++.++.++++.....+..++...+..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777766666666666555555554443
No 43
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.97 E-value=0.28 Score=51.70 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHh
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR---LEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~---le~~i~~Le~e~~~l~q~ 687 (1122)
+..+...++.|.+.+.+|+...+++|.......-..++..++|..+-.++.-|+.++.+ +-+.+++|++|...|+|+
T Consensus 100 lsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 100 LSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555544444444555566666665556556555543 334666666666666664
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.95 E-value=0.8 Score=62.25 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+++...+.++.+++.++..++.+++.+++
T Consensus 447 F~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 447 FQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 45
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.87 E-value=0.00085 Score=43.55 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=15.0
Q ss_pred chhhhhHHHHHHHHHHHHHH
Q 001214 424 ASCLRIQRDLRMYLAKKAYK 443 (1122)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~ 443 (1122)
.||++||++||||.+|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 47778888888888877764
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.86 E-value=0.85 Score=62.06 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=19.4
Q ss_pred cCCccccccccCcHHHHHHhhcCCcchhhhhHhhh
Q 001214 116 EAINWSYIEFVDNQDILDLIEKKPGGIIALLDEAC 150 (1122)
Q Consensus 116 E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~ 150 (1122)
-||.-....|..-..+-.++..+|...+.+||+..
T Consensus 131 ~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 165 (1179)
T TIGR02168 131 TGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAA 165 (1179)
T ss_pred cCCCcccchheecccHHHHHcCCHHHHHHHHHHHc
Confidence 45543333343333455566666777777777654
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=1.5 Score=55.98 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=8.3
Q ss_pred HHHHHHHHhhcCCC
Q 001214 334 VTACKRLLEKVGLE 347 (1122)
Q Consensus 334 ~~~~~~il~~~~~~ 347 (1122)
...+..+|...|+|
T Consensus 208 ~~~V~~lLk~~gID 221 (1293)
T KOG0996|consen 208 FKDVTKLLKSHGID 221 (1293)
T ss_pred HHHHHHHHHhcCCC
Confidence 34566777666554
No 48
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.80 E-value=2 Score=53.24 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~ 689 (1122)
.++.++++.+++.+-+....+...++.+..|++.+..++.+..
T Consensus 507 kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 507 KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455556666666666777777777777777777777766543
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.79 E-value=2.4 Score=57.65 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=7.1
Q ss_pred HHHHHHHHhHHHHHHHH
Q 001214 668 HRLEEKVSDMETENQIL 684 (1122)
Q Consensus 668 ~~le~~i~~Le~e~~~l 684 (1122)
..++..+..++.++..+
T Consensus 436 ~~~~~~~~~~~~~~~~l 452 (1179)
T TIGR02168 436 KELQAELEELEEELEEL 452 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 50
>PRK11637 AmiB activator; Provisional
Probab=96.77 E-value=0.49 Score=56.69 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~ 679 (1122)
.++.......+..+.+++.+...++..|.+++.
T Consensus 222 ~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 222 TGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555554443
No 51
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.67 E-value=0.01 Score=70.53 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=59.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---------
Q 001214 422 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK--------- 492 (1122)
Q Consensus 422 ~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~--------- 492 (1122)
...-++.||+.||||.+|.+|++++.+++.|+ +||.+..+ ..+..||+.+|++..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~ 764 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPL 764 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCch
Confidence 34578899999999999999999999999999 88754322 345678999999999998854
Q ss_pred -hhhHHHhhhhhhhHHHHHHHH
Q 001214 493 -LKKAAITTQCAWRGKVARREL 513 (1122)
Q Consensus 493 -~~~a~i~iQ~~~R~~~ark~~ 513 (1122)
++...-.+|..+-+|.+.+-+
T Consensus 765 ~Lr~~~~~L~~lf~rwra~~~~ 786 (1001)
T KOG0164|consen 765 VLREFEELLRELFIRWRAWQIL 786 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544444444333
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.57 Score=58.60 Aligned_cols=48 Identities=25% Similarity=0.397 Sum_probs=26.0
Q ss_pred hhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhh
Q 001214 91 NLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEAC 150 (1122)
Q Consensus 91 NyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~ 150 (1122)
+-.|-++|++|.. -|++.....| .--.-+--.+.-||.-|++++.|..
T Consensus 121 ~a~~~~vq~lF~S------------VqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAA 169 (1174)
T KOG0933|consen 121 LAQNSKVQDLFCS------------VQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAA 169 (1174)
T ss_pred eCchhHHHHHHHH------------hcccCCCCceEEecccchhhhcCCcHHHHHHHHHhh
Confidence 3456677777754 3444333333 1111233445556778888888754
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.58 E-value=2.2 Score=57.66 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=7.0
Q ss_pred cchhhhHHHHhhCCC
Q 001214 293 GGVMEAIRISCAGYP 307 (1122)
Q Consensus 293 ~gvle~iri~~~g~p 307 (1122)
.|+..+......|+|
T Consensus 501 ~~~~~~~~~~~~~~~ 515 (1163)
T COG1196 501 QGVRAVLEALESGLP 515 (1163)
T ss_pred hhHHHHHHHHhccCC
Confidence 344445555555443
No 54
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.57 E-value=0.78 Score=50.22 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+..++.+++......+..+..|+..|..|+.++.
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444443
No 55
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=2.7 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=13.7
Q ss_pred HHHHHhhcCCC-------Ccccccceeeec
Q 001214 337 CKRLLEKVGLE-------GYQIGKTKVFLR 359 (1122)
Q Consensus 337 ~~~il~~~~~~-------~~~iG~tkVFlr 359 (1122)
+...++-++.| .|.||.|-|+=.
T Consensus 601 v~~al~Li~yd~~l~~amefvFG~tlVc~~ 630 (1174)
T KOG0933|consen 601 VELALSLIGYDDELKKAMEFVFGSTLVCDS 630 (1174)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCceEEecC
Confidence 34444444544 577888877753
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.49 E-value=0.11 Score=56.86 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 560 QENAKLQSALQEMQLQFKESK 580 (1122)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~ 580 (1122)
.++..|..++..++..++..+
T Consensus 36 ~e~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444443
No 57
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.46 E-value=0.034 Score=71.39 Aligned_cols=139 Identities=23% Similarity=0.227 Sum_probs=86.9
Q ss_pred HHHHHhhhcccchhhhchh-------hhhHhhhhHhhhhccccccccccccc---hhhhhHHHHHHHHHHHHHHHh----
Q 001214 380 IIQRKVRSYLSRKNYIMLR-------RSAIHIQAACRGQLARTVYESMRREA---SCLRIQRDLRMYLAKKAYKDM---- 445 (1122)
Q Consensus 380 ~IQ~~~R~~~~R~~y~~~r-------~a~i~iQ~~~Rg~lar~~~~~~r~~~---AAi~IQ~~~R~~~~rk~y~~~---- 445 (1122)
..++.+++++.|....-+. ...+..|+.+||+..+.....+--.. -..++|+..||+..|..+...
T Consensus 482 k~~~~~~~~l~~~~~~~~~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl 561 (1401)
T KOG2128|consen 482 KWLAYIYGNLVREAKKWLLEELHFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFL 561 (1401)
T ss_pred hhHHHhhhhhhhhhhccccHHHHHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHH
Confidence 4455566665555433322 23445677777776655433222111 123458888888777665432
Q ss_pred ---hhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-------hhHHHhhhhhhhHHHHHHHH
Q 001214 446 ---CFSAVCIQTGMRGMAA--RNELRFRRQTRASILIQSHCRKYLARLHYMKL-------KKAAITTQCAWRGKVARREL 513 (1122)
Q Consensus 446 ---r~a~~~iQs~~Rg~~a--R~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~-------~~a~i~iQ~~~R~~~ark~~ 513 (1122)
-+.+..+|+.|||+.. -+.....-....++.+|++.|++..|+.|.+. ..+.+.+|+..|....|..+
T Consensus 562 ~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y 641 (1401)
T KOG2128|consen 562 KKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDY 641 (1401)
T ss_pred HhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHH
Confidence 3467788888888873 22222333446678888888888888877554 35678889988888888888
Q ss_pred HHHHH
Q 001214 514 RKLKM 518 (1122)
Q Consensus 514 ~~lk~ 518 (1122)
+.+.-
T Consensus 642 ~~L~~ 646 (1401)
T KOG2128|consen 642 KLLFT 646 (1401)
T ss_pred HHHhc
Confidence 77664
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.44 E-value=0.45 Score=57.01 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 526 LQAAKNKLEKQVEELTWRLQ 545 (1122)
Q Consensus 526 L~~~~~~LE~kv~el~~~l~ 545 (1122)
|++....|+.++.+++..|.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.43 E-value=5.1 Score=54.34 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=15.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccC
Q 001214 1078 DNYNTRSVSPNVISSMRILMTEDS 1101 (1122)
Q Consensus 1078 d~~e~~~v~~~~i~~l~~~~~~~~ 1101 (1122)
|+.+. +++..-...+..++++-+
T Consensus 1095 DEVDA-aLD~~Nv~r~~~~i~e~s 1117 (1163)
T COG1196 1095 DEVDA-ALDDANVERVARLIKEMS 1117 (1163)
T ss_pred ccchh-hccHHHHHHHHHHHHHhC
Confidence 55553 677777777777777654
No 60
>PRK02224 chromosome segregation protein; Provisional
Probab=96.42 E-value=0.23 Score=65.25 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 001214 532 KLEKQVEELTWRL 544 (1122)
Q Consensus 532 ~LE~kv~el~~~l 544 (1122)
.++..+.+++..+
T Consensus 479 ~~~~~~~~le~~l 491 (880)
T PRK02224 479 ELEAELEDLEEEV 491 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344443333
No 61
>PRK02224 chromosome segregation protein; Provisional
Probab=96.36 E-value=6.1 Score=52.09 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=8.1
Q ss_pred cceeeeccccccc
Q 001214 353 KTKVFLRAGQMAD 365 (1122)
Q Consensus 353 ~tkVFlr~~~~~~ 365 (1122)
..-||+..|.+..
T Consensus 130 ~~~~~i~Qge~~~ 142 (880)
T PRK02224 130 VNCAYVRQGEVNK 142 (880)
T ss_pred cceeEeeccChHH
Confidence 3347888877643
No 62
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.35 E-value=0.68 Score=55.48 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001214 525 ALQAAKNKLEKQVEELT 541 (1122)
Q Consensus 525 ~L~~~~~~LE~kv~el~ 541 (1122)
.|.+....|+.++..++
T Consensus 154 eL~~~~~~Le~e~~~l~ 170 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLR 170 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 63
>PRK09039 hypothetical protein; Validated
Probab=96.32 E-value=0.31 Score=56.18 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRV 552 (1122)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~e~~~~~ 552 (1122)
+....+...+|+.++.+|..-+..+.....
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~ 77 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQ 77 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666677777777766665554443
No 64
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.27 E-value=1.4 Score=51.14 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+...+...++++.+|..+-..|+..|.+++.++
T Consensus 215 l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 215 LNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333444444455555555555555555333
No 65
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.27 E-value=3.3 Score=50.37 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 001214 427 LRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1122)
Q Consensus 427 i~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1122)
-.|++ +..|+.+.+|.+...++..+-.. +.+ ..-+..+.+.+|+..|||++|++++...
T Consensus 778 ~lv~k-Vn~WLv~sRWkk~q~~a~sVIKL------kNk--I~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 778 ELVAK-VNKWLVRSRWKKSQYGALSVIKL------KNK--IIYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHH-HHHHHHHhHHHHhhhhhhheeeh------hhH--HHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 34444 67788888887765543322111 111 1223346778899999999998886544
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.16 E-value=1.5 Score=50.34 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHH
Q 001214 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL----EEKVSDMETENQ 682 (1122)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~l----e~~i~~Le~e~~ 682 (1122)
+.+++..+..+...++..+...++.+.+++.++.++.....++..+..+++..+.++++....- ..++.+|+.+..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3556666667777777777766666666666666666666655555555555555555444322 236777777777
Q ss_pred HHHH
Q 001214 683 ILRQ 686 (1122)
Q Consensus 683 ~l~q 686 (1122)
.|+.
T Consensus 287 ~Le~ 290 (325)
T PF08317_consen 287 ALEK 290 (325)
T ss_pred HHHH
Confidence 7776
No 67
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.07 E-value=0.0081 Score=38.97 Aligned_cols=19 Identities=58% Similarity=0.833 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001214 472 RASILIQSHCRKYLARLHY 490 (1122)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~ 490 (1122)
++|+.||++||+|++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666655
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.04 E-value=0.76 Score=57.19 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDE 634 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1122)
...+..+...+..++.++..+...+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~ 324 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDE 324 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 69
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.99 E-value=2.8 Score=52.73 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+...+...++++..++.+..-.+.++.+|.+||..|+.+
T Consensus 299 leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 299 LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555566555543
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.98 E-value=8.7 Score=52.67 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
...++.+.+.++..++.++..++..++.++++...+
T Consensus 447 F~aklee~e~qL~elE~kL~~lea~leql~~~~~~l 482 (1486)
T PRK04863 447 FQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555554444444433
No 71
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.98 E-value=7.8 Score=49.80 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.6
Q ss_pred hccchhhhHHH
Q 001214 291 RCGGVMEAIRI 301 (1122)
Q Consensus 291 r~~gvle~iri 301 (1122)
.-.|.++.|++
T Consensus 37 ~~sG~I~sI~L 47 (1074)
T KOG0250|consen 37 AESGKIESIHL 47 (1074)
T ss_pred hhcceEEEEEE
Confidence 33344444433
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.96 E-value=1.3 Score=44.39 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~ 642 (1122)
.|+..+.-|+++++.....+.+...++.++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.93 E-value=1.2 Score=55.12 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..++.....+..|++.+.+|+...-.+.....++...+........++.+++.+++.++..+++.+....+|...|++
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555666666666665554444443333333332222223345555556666666666666666556655554
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.91 E-value=2.5 Score=43.61 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
.++...+..+..-..+|+.++.+|++.+
T Consensus 161 ~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 161 EELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555554444
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=95.80 E-value=0.88 Score=59.94 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
..+..++..+..+..++..++..+..++++++.+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 76
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.74 E-value=2.4 Score=52.67 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhcCCCC
Q 001214 248 FKQQLQQLLETLSSSEP 264 (1122)
Q Consensus 248 f~~sl~~Lm~~l~~t~~ 264 (1122)
|-.-+..+|-.|.+|-|
T Consensus 201 lY~y~vkmlfkLHs~vp 217 (980)
T KOG0980|consen 201 LYDYLVKMLFKLHSQVP 217 (980)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 44445555666665543
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.71 E-value=3.1 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
+-...+..+...+.+...-..+|+.|+..|.++.
T Consensus 155 e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 155 ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666667777777776643
No 78
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.65 E-value=3.6 Score=43.41 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKK 638 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1122)
.++|....+.++..+++-...+..++.+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444443
No 79
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.61 E-value=15 Score=50.14 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=16.8
Q ss_pred HHhccccCCCCCCCCCHH-HHHHHHHHhh
Q 001214 1071 ICTLYWDDNYNTRSVSPN-VISSMRILMT 1098 (1122)
Q Consensus 1071 il~~Y~~d~~e~~~v~~~-~i~~l~~~~~ 1098 (1122)
....|+..+.. ..||++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455433333 368988 8888877665
No 80
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.60 E-value=2.9 Score=48.31 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 001214 666 AMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 666 ~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.-.|+++.++-+.++-..||
T Consensus 493 efLslqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 493 EFLSLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 333444444444444444443
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.53 E-value=3.7 Score=50.24 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+++....++....++.....+++.+...|.+++.+-++.+..++++++.++|
T Consensus 253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444445555566777777777777777777777776
No 82
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.49 E-value=0.0099 Score=40.81 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.5
Q ss_pred cchhhhhHHHHHHHHHHHHHH
Q 001214 423 EASCLRIQRDLRMYLAKKAYK 443 (1122)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~ 443 (1122)
..+|+.||++||||.+|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357888888888888888873
No 83
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=3.9 Score=44.76 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 561 ENAKLQSALQEMQLQFKESKE 581 (1122)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~ 581 (1122)
+.++|++++.+++..+.+.++
T Consensus 81 eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 81 EIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 84
>PRK09039 hypothetical protein; Validated
Probab=95.47 E-value=1.4 Score=51.02 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 001214 532 KLEKQVEELTWRLQ 545 (1122)
Q Consensus 532 ~LE~kv~el~~~l~ 545 (1122)
.++.++.+++.+++
T Consensus 78 ~l~~~l~~l~~~l~ 91 (343)
T PRK09039 78 DLQDSVANLRASLS 91 (343)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444443
No 85
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.42 E-value=5.2 Score=43.75 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
.+.+....+.+.+++++|..|+.|.+.|+.+.
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556667777778888888888888777654
No 86
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.40 E-value=1.3 Score=53.20 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
....++.++.+|+.++.+++.++++.++...............+.++++++..+...++.+++++..|+.|+..++.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 45566667777777777777777766666655555555555555555555555555555555555555555544443
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.24 E-value=3.7 Score=51.07 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 620 KLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 620 kLe~~l~~l~~~l~ele~ 637 (1122)
.|++.+.+++.++..++.
T Consensus 303 ~l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDT 320 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 88
>PRK03918 chromosome segregation protein; Provisional
Probab=95.22 E-value=1.6 Score=57.52 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETE-----KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele-----~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+..+..++..++.++.+++.+++++. .....++.....+..++..+...+..++.++..++..+..++.++..++
T Consensus 628 l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~ 707 (880)
T PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 3444444555555555555555666666666666666665555554443
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.21 E-value=6.3 Score=54.15 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 521 RETGALQAAKNKLEKQVEELTWR 543 (1122)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~ 543 (1122)
.+.+.+......++.++.+|+.+
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~k 865 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSK 865 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555433
No 90
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.17 E-value=11 Score=45.84 Aligned_cols=13 Identities=54% Similarity=0.516 Sum_probs=10.4
Q ss_pred Ccccccccccccc
Q 001214 66 KSLIGVLDIYGFE 78 (1122)
Q Consensus 66 ~~~IgiLDi~GFE 78 (1122)
.+.+|+|||-|=+
T Consensus 9 ~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 9 VSLGGFLDIQGAV 21 (961)
T ss_pred hhhcccccccccc
Confidence 5678999998865
No 91
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.13 E-value=3.7 Score=51.73 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=11.6
Q ss_pred ccccccccCCCchhHh
Q 001214 73 DIYGFESFKTNSFEQF 88 (1122)
Q Consensus 73 Di~GFE~f~~Nsfeql 88 (1122)
|+-|=+.+..|+-+++
T Consensus 30 ~~lg~~p~s~ng~e~i 45 (1195)
T KOG4643|consen 30 DMLGSTPSSSNGEEAI 45 (1195)
T ss_pred hhhccCccccchHHHH
Confidence 4667777888887765
No 92
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=12 Score=47.93 Aligned_cols=32 Identities=3% Similarity=-0.027 Sum_probs=14.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001214 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGM 456 (1122)
Q Consensus 425 AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~ 456 (1122)
++..-|..|..|..-..-.....-+...++-.
T Consensus 212 ~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei 243 (1141)
T KOG0018|consen 212 KAQKEQFLWELFHVEACIEKANDELSRLNAEI 243 (1141)
T ss_pred HHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhh
Confidence 44555555555555444443333333333333
No 93
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.05 E-value=7.4 Score=43.53 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD-------METEN 681 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~-------Le~e~ 681 (1122)
+.+..-..+....++++..|..++-+++.+.+..-.+.+++...+......-..|..++.+++++-.+ .++|+
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666666666667777777766677777777666655556666666666665544 55666
Q ss_pred HHHHH
Q 001214 682 QILRQ 686 (1122)
Q Consensus 682 ~~l~q 686 (1122)
+.+|+
T Consensus 300 k~lR~ 304 (306)
T PF04849_consen 300 KTLRK 304 (306)
T ss_pred HHhhC
Confidence 66554
No 94
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.00 E-value=3.8 Score=40.62 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 616 SENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele 636 (1122)
+++..|.+.++..+.++.+++
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 95
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.97 E-value=22 Score=48.48 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=14.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccC
Q 001214 1078 DNYNTRSVSPNVISSMRILMTEDS 1101 (1122)
Q Consensus 1078 d~~e~~~v~~~~i~~l~~~~~~~~ 1101 (1122)
|+-+ .+.|.-++.|-.+++.++
T Consensus 1154 DEiG--~L~~~Nv~~l~~~~~~nn 1175 (1201)
T PF12128_consen 1154 DEIG--KLHPNNVKKLLDMCNSNN 1175 (1201)
T ss_pred hhhc--cCChHHHHHHHHHHHhCC
Confidence 5555 477777777777776553
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.94 E-value=7 Score=47.16 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA----ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~----~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
..|+......+..|+.++.++|....-+++...++.-++.+. +..+...+.++..|.+++..+-.|++.|-
T Consensus 295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555555444444332 34455566666666666666666666553
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.87 E-value=6.3 Score=43.97 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=5.2
Q ss_pred HHHhHHHHHHHHH
Q 001214 673 KVSDMETENQILR 685 (1122)
Q Consensus 673 ~i~~Le~e~~~l~ 685 (1122)
++..|..+...|+
T Consensus 186 qm~~l~~eKr~Lq 198 (310)
T PF09755_consen 186 QMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 98
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.85 E-value=0.2 Score=57.03 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=74.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcc-CCCCCccchhHHhhchHHHHHHHhhcc
Q 001214 943 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQAK 1021 (1122)
Q Consensus 943 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~ 1021 (1122)
.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..|-.--.++...|..+|.++.+..
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 34567899999999998554 5689999999999999999999999998864 355555666789999999999999861
Q ss_pred c--ccccccHHHhHHHHHHHhHhhhcccccCCHHHHHhccCcCCCHHHHHHHHhccc
Q 001214 1022 E--EYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYW 1076 (1122)
Q Consensus 1022 ~--~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Qi~~il~~Y~ 1076 (1122)
. .-.+....+|..++|.++||....-..--...+...-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 0 124566789999999999999863222211145555678899999998888774
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.80 E-value=1.4 Score=49.13 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
..|..++..++..+..+-.+.+++...+...+..-..+...+.+++.+.......+.+.++++..++
T Consensus 237 t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 237 TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444433333333444444333333333444444555555555555555555555443
No 100
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.78 E-value=18 Score=46.54 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
+++.+...-+..+.+...++..|+.+++.
T Consensus 1714 dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1714 DLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 33333333333444444444444444443
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.75 E-value=6.1 Score=44.94 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETENQILR 685 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le----~~i~~Le~e~~~l~ 685 (1122)
....+..++..+..++...+.++.+++.++.++....++...+..+.+..+.++++.+++-+ .++..|+.+...++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444443333221 26666777777776
Q ss_pred Hh
Q 001214 686 QQ 687 (1122)
Q Consensus 686 q~ 687 (1122)
+.
T Consensus 285 ~l 286 (312)
T smart00787 285 SL 286 (312)
T ss_pred HH
Confidence 63
No 102
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.75 E-value=10 Score=43.59 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=6.6
Q ss_pred HHhHHHHHHHHHHhh
Q 001214 674 VSDMETENQILRQQS 688 (1122)
Q Consensus 674 i~~Le~e~~~l~q~~ 688 (1122)
..+|+.|.+.|||.+
T Consensus 405 e~eleqevkrLrq~n 419 (502)
T KOG0982|consen 405 EIELEQEVKRLRQPN 419 (502)
T ss_pred HHHHHHHHHHhcccc
Confidence 334444444444433
No 103
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.68 E-value=17 Score=47.19 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~--~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
.+...+...++..+..|+..+.+....+.+++.+..+....+.+.++ .-..++.+++.++++++.+..|.+.+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444444433333333333222 23455666666666666666666555
No 104
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.65 E-value=6.3 Score=40.71 Aligned_cols=70 Identities=27% Similarity=0.322 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-------ESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~-------~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
+..|..+...+...+..+....+.+..+....+.....+..++.++ +..+..|++++.+|++.+...+.+
T Consensus 111 ~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 111 SEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 3344444444444444444443333333333333333333333333 334444444444444444444333
No 105
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.61 E-value=1.1 Score=52.08 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
....+..++.+|..++-++++++..+.-+.+++...+......-.+++.+..+++.+..+..+...+-++|++.++.
T Consensus 227 el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 227 ELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455556666666665555544444444443333333333444555555666666666666777777777775
No 106
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.60 E-value=10 Score=42.88 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 558 KTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 558 ~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1122)
-+..+..|+.++++|...+.+++.+..--++...+........... .....-+.|-.+.+++...+..|+..+..+-+
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777776666555332233222221111000000 01123333444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 638 KFEETSKISEERLKQALEAESK--------------IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 638 ~~~e~~~~~~~~~~~l~~~~~~--------------~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.+++..+.+....+..-+..+ ++.|-.+..=|.+++..+++|...+++.
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333222221 3566677777888888888888877763
No 107
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.57 E-value=0.017 Score=39.72 Aligned_cols=20 Identities=55% Similarity=0.773 Sum_probs=12.7
Q ss_pred chhHHHHHHHhhhcccchhh
Q 001214 375 GRSASIIQRKVRSYLSRKNY 394 (1122)
Q Consensus 375 ~~~a~~IQ~~~R~~~~R~~y 394 (1122)
..+++.||+.||||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666665
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.53 E-value=4.7 Score=46.39 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhHH
Q 001214 666 AMHRLEEKVSDME 678 (1122)
Q Consensus 666 ~~~~le~~i~~Le 678 (1122)
++..|+.++..|+
T Consensus 277 Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 277 EVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.50 E-value=4.9 Score=51.03 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001214 557 AKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1122)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee 596 (1122)
++.++...|+.+++.|..+++..+..+.+....+..+.++
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777666666554444444444433
No 110
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.43 E-value=2.7 Score=41.50 Aligned_cols=29 Identities=28% Similarity=0.577 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.-..|++++.+++.++.+|...|..|-+|
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457777777777777777777776554
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.36 E-value=19 Score=45.16 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=5.8
Q ss_pred CcCCCHHHHHH
Q 001214 1060 CPILSVQQLYR 1070 (1122)
Q Consensus 1060 c~~Ls~~Qi~~ 1070 (1122)
++.||+.||.+
T Consensus 934 FS~ls~h~~K~ 944 (980)
T KOG0980|consen 934 FSSLSLHQLKT 944 (980)
T ss_pred cccccHHHHHH
Confidence 45555555543
No 112
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=6.2 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 001214 666 AMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 666 ~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.+.++-+|.+|+++.+-+.++
T Consensus 195 EyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555777888888777765
No 113
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.25 E-value=11 Score=41.85 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 635 le~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.|+.+.+...+.+-+..+++..++....+.+++..|++-+..++.....++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3444555555555555556666666667777777787777777777766653
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.20 E-value=13 Score=47.29 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
.+...++.+.+..+..++.+++.++.++..++.++..
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444433
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.13 E-value=5.8 Score=39.18 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
+...+.+++..+..|..+..-|-++|+
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444443
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.13 E-value=17 Score=43.64 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 520 ARETGALQAAKNKLEKQV 537 (1122)
Q Consensus 520 a~~~~~L~~~~~~LE~kv 537 (1122)
+.+++.+++...+|.+++
T Consensus 307 EeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 117
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.04 E-value=1.8 Score=46.68 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001214 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1122)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~ 689 (1122)
...|+.+...|.+..+.+++...++..+.......+.-++.++......++.|+.++..++.|++..++.+.
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444445555555555666655555555556667777777778888888888888888887777554
No 118
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.03 E-value=12 Score=45.71 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~ 689 (1122)
....+++.-++.++..|.+++..-...|..|+.++..|+.+..
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334445556677777888777777788888888888888653
No 119
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.00 E-value=14 Score=42.00 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=4.8
Q ss_pred HHHHHHHhHHHHH
Q 001214 669 RLEEKVSDMETEN 681 (1122)
Q Consensus 669 ~le~~i~~Le~e~ 681 (1122)
+|+.....|+.|.
T Consensus 263 ~lEt~q~~leqev 275 (499)
T COG4372 263 RLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.98 E-value=14 Score=42.07 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEK----KIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~----~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
++.+.|..+...|++..++++. .+..+..++.+...+.....+++.+.+.++..+...+++..++..++++++..+
T Consensus 179 ~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 179 DRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444322 334444455555555555555566666666666666666666666666666665
Q ss_pred HH
Q 001214 685 RQ 686 (1122)
Q Consensus 685 ~q 686 (1122)
+.
T Consensus 259 e~ 260 (312)
T smart00787 259 EK 260 (312)
T ss_pred HH
Confidence 55
No 121
>PTZ00014 myosin-A; Provisional
Probab=93.86 E-value=0.071 Score=67.96 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001214 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1122)
Q Consensus 425 AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~ 463 (1122)
++..||++||||.+|+.|.+.+.+++.||+.+|++++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666665555555555555555543
No 122
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=13 Score=40.76 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 557 AKTQENAKLQSALQEMQLQFKESKEKLMKE 586 (1122)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l~~e 586 (1122)
....++.+++.++..++.+++..+....++
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777776665433
No 123
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.61 E-value=6.3 Score=48.75 Aligned_cols=15 Identities=53% Similarity=0.882 Sum_probs=9.7
Q ss_pred eeccceEEeccchhhhc
Q 001214 188 HYAGDVTYQTELFLDKN 204 (1122)
Q Consensus 188 H~ag~V~Y~~~~fl~kN 204 (1122)
+|.|++-|+ .||=-|
T Consensus 79 Gy~~digyq--~fLYp~ 93 (594)
T PF05667_consen 79 GYRGDIGYQ--TFLYPN 93 (594)
T ss_pred CCCCCCcch--hhccCC
Confidence 477888886 366333
No 124
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.54 E-value=15 Score=46.47 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 623 TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 623 ~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+++.++...+.+...+..+.......+..++++++.+-..+-++-+.|+..+..++++++.-++.
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444445555556666677777777788888888888888888776664
No 125
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.24 E-value=12 Score=48.56 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=22.5
Q ss_pred CCeEEEeeccceEEeccchhhhc-----chhhhHHHHHHHhh
Q 001214 182 SDFTICHYAGDVTYQTELFLDKN-----KDYVVAEHQALLSA 218 (1122)
Q Consensus 182 ~~F~i~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 218 (1122)
.+..+.-|+-.+.-+.+|-+.-+ .|+++|+++..+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 45555555555555666655444 47888887765544
No 126
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.22 E-value=13 Score=45.06 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.-...+++..+.+|..++.|.+.|+.+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555554
No 127
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.12 E-value=8.2 Score=47.04 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=14.3
Q ss_pred CCCCCccchhHHhhchHHHHHHHhhccc
Q 001214 995 RECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1122)
Q Consensus 995 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1022 (1122)
++..-|++ .++-.|+.+.|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 46677887 466678888774
No 128
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.09 E-value=7.7 Score=42.01 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+..|+++...-=++-.+|+.|+..|+-+
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3444444444444556677777777653
No 129
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=93.07 E-value=1.5 Score=57.16 Aligned_cols=164 Identities=24% Similarity=0.230 Sum_probs=104.1
Q ss_pred HHHHHHhhhcccchhhhch-----hhhhHhhhhHhhhhcccccccc----cc-ccchhhhhHHHHHHHHH----HHHHHH
Q 001214 379 SIIQRKVRSYLSRKNYIML-----RRSAIHIQAACRGQLARTVYES----MR-REASCLRIQRDLRMYLA----KKAYKD 444 (1122)
Q Consensus 379 ~~IQ~~~R~~~~R~~y~~~-----r~a~i~iQ~~~Rg~lar~~~~~----~r-~~~AAi~IQ~~~R~~~~----rk~y~~ 444 (1122)
+..|+.+||+..|..--.+ ..-...+|+..||+..|..++. ++ ..-....||..|||+.. ...+..
T Consensus 511 is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~ 590 (1401)
T KOG2128|consen 511 ISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDS 590 (1401)
T ss_pred hhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHH
Confidence 3378888888777642211 2223445999999988776553 22 34467889999999984 233445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHhhhHH----Hhhhh----hhhH---HH
Q 001214 445 MCFSAVCIQTGMRGMAARNELRFRRQ-----TRASILIQSHCRKYLARLHYMKLKKAA----ITTQC----AWRG---KV 508 (1122)
Q Consensus 445 ~r~a~~~iQs~~Rg~~aR~~~~~~~~-----~~aa~~IQ~~~R~~~~r~~~~~~~~a~----i~iQ~----~~R~---~~ 508 (1122)
...-++.+|+..||+.+|+.+....+ ..+.+.||++.|+...|..|..+..+- ..+-+ ..++ ..
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s~npsl~~vrkFV~lld~~~~df~ 670 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFTSENPSLETVRKFVHLLDQTDVDFE 670 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhcCCCCchhhHHhhhhhcCCccchHH
Confidence 56778999999999999988755433 457889999999999999998875321 11100 0000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 509 ARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ 545 (1122)
Q Consensus 509 ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~ 545 (1122)
...+ +.....++......+++||+.+.++..++.
T Consensus 671 ~e~~---le~lr~eIsrk~~sne~Lekdi~~md~kIg 704 (1401)
T KOG2128|consen 671 EELE---LEKLREEISRKIRSNEQLEKDINEMDEKIG 704 (1401)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112 222333555555666777777777665555
No 130
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.06 E-value=14 Score=39.28 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA-LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l-~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
..+++++..|+-+.+.|+.+...++..+.++..........+ ....-+..-|++.+..|.+.++..+.++...-
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333222222 11233345577777777777777777765443
No 131
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.02 E-value=29 Score=42.78 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001214 664 KTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 664 ~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+..+|.+.+..|+++-..|..
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655554
No 132
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.98 E-value=15 Score=39.27 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+-..+.+|+++...|..|+..-.+|
T Consensus 161 ~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567788888888999998876543
No 133
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.93 E-value=14 Score=46.00 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.8
Q ss_pred cccceeeecc
Q 001214 351 IGKTKVFLRA 360 (1122)
Q Consensus 351 iG~tkVFlr~ 360 (1122)
.|.|...|..
T Consensus 59 ~Ges~~~f~~ 68 (569)
T PRK04778 59 TGQSEEKFEE 68 (569)
T ss_pred CcccHHHHHH
Confidence 4555554443
No 134
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.82 E-value=19 Score=40.14 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHh
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE-----------SKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~-----------~~~~~l~~~~~~le~~i~~ 676 (1122)
+..+..+..|+..|+-.++++..+..|.+++..++.++..+.......+. .-++.-+.-+..|+.++++
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 34455566666666767777666666666666666555554433322221 1123444555556666666
Q ss_pred HHHHHHHHHH
Q 001214 677 METENQILRQ 686 (1122)
Q Consensus 677 Le~e~~~l~q 686 (1122)
|--|...+=|
T Consensus 213 Lm~EirnLLQ 222 (401)
T PF06785_consen 213 LMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHH
Confidence 6556555444
No 135
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.78 E-value=0.86 Score=48.24 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.......+..++..+..++.++..++....+..+.++.++.++..|+-+...+++++.+|+.||..|-+
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444445555666666666777777777777777776644
No 136
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=34 Score=42.76 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
...+.++...+...++.......+.......+....++..+++++.+..+..+..++..+..+...+++|++.|+...
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455544445555555555555555555556666666666666666666666666666666543
No 137
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=92.71 E-value=1.5 Score=53.61 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=86.3
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccc
Q 001214 944 ASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEE 1023 (1122)
Q Consensus 944 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~ 1023 (1122)
.+++....+..|...+..|+.. +++.....+...+..-|+..+|+.++++. -+|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 4567889999999999999998 99999999999999999999999999976 56777778877776554443332
Q ss_pred cccccHHHhHHHHHHHhHhhhcccccCCH--------------HHHHhcc-CcCCCHHHHHHHHh
Q 001214 1024 YAGSSWDELKHIRQAVGFLVIHQKYRISY--------------DEITNDL-CPILSVQQLYRICT 1073 (1122)
Q Consensus 1024 ~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-c~~Ls~~Qi~~il~ 1073 (1122)
+......++..|.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44445579999999999999986543322 1222111 14688888888775
No 138
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.58 E-value=34 Score=42.43 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=3.4
Q ss_pred HHHHHH
Q 001214 1012 ELELWC 1017 (1122)
Q Consensus 1012 ~Le~W~ 1017 (1122)
.||+|+
T Consensus 954 tIEdwi 959 (1265)
T KOG0976|consen 954 TIEDWI 959 (1265)
T ss_pred ccccce
Confidence 456665
No 139
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.37 E-value=16 Score=46.51 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHH-HHHhCCCCHHHHHH
Q 001214 947 HWQSIIDSLNTLLS-TLKQNFVPPVLVQK 974 (1122)
Q Consensus 947 ~~~~il~~L~~~~~-~l~~~~v~~~l~~Q 974 (1122)
+++.+-+-+..=.. .++..+|++.+++|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 45555544444444 56677777775554
No 140
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.34 E-value=21 Score=42.38 Aligned_cols=23 Identities=4% Similarity=0.190 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001214 664 KTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 664 ~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..++.+++.++..++.++..++.
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 141
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.32 E-value=25 Score=40.30 Aligned_cols=10 Identities=40% Similarity=0.388 Sum_probs=5.8
Q ss_pred hhHHHHHHHH
Q 001214 472 RASILIQSHC 481 (1122)
Q Consensus 472 ~aa~~IQ~~~ 481 (1122)
.|.+.||...
T Consensus 85 ~Asv~IQara 94 (552)
T KOG2129|consen 85 LASVEIQARA 94 (552)
T ss_pred hhhhHHhhcc
Confidence 3566677543
No 142
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=2.8 Score=50.28 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE---RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~---~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+.+++.|+.+++.|+..+++++..++.++.++++...+... ...++...+..+..|+.++.+-...++.|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667766666666666666666655444332 112244556777788888888888888888888877
Q ss_pred HH
Q 001214 685 RQ 686 (1122)
Q Consensus 685 ~q 686 (1122)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 75
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.27 E-value=12 Score=47.61 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~----l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++.+|++.++..+..++..++++..+.+..+......... ..--..+.+..++-+.+.-++|.++-.+++.++.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666555554433221100000 0001233345555555566666666666655543
No 144
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.27 E-value=17 Score=38.34 Aligned_cols=27 Identities=44% Similarity=0.625 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 618 NEKLKTLVSSLEKKIDETEKKFEETSK 644 (1122)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1122)
..+|...++.++..+++.+.++..+++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666665555555544
No 145
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=36 Score=42.46 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~ 689 (1122)
-+...++...+...+..+.+++++......+.++++++..+.++..+++.++++..
T Consensus 549 ~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~ 604 (698)
T KOG0978|consen 549 TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRK 604 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555566667777777777888888888888888877776543
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.12 E-value=17 Score=37.85 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~ 646 (1122)
+...+..+...++.++.+.++.+..+++.+..+..+.
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333
No 147
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.09 E-value=29 Score=42.71 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
...+..+..+..++...+..+...+..+
T Consensus 389 ~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 389 EEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333
No 148
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.53 E-value=22 Score=38.09 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++.....++..-..++-..++-.+..+--|+.++++.+.+|+.|+..++.+.+
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544555555556666777778888888888888888888877765
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.51 E-value=6.7 Score=41.29 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHh
Q 001214 663 LKTAMHRLEEKVSD 676 (1122)
Q Consensus 663 l~~~~~~le~~i~~ 676 (1122)
++.....+.+.+.+
T Consensus 170 ~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 170 LQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.45 E-value=2.5 Score=44.98 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+..++++++++++++.++..+.. ....+++....+..+.+.+++++..+|.+++..++.++..++.+++.++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444332 22223333333333334445555555555555555555555555555554
No 151
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.36 E-value=2.5 Score=44.69 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~ 673 (1122)
...+..+..++..|+..+.++...+.+.++.+..+..+...+.-.+..++.++..++.+..+|=++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555544444444455555555555444433
No 152
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.24 E-value=47 Score=41.30 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc----------------hhhHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP----------------VIDHAVVEELTSENEKLKTLVS 626 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~----------------~~~~~~~~~L~~e~~kLe~~l~ 626 (1122)
.+...++..++.++.+...++....+..+++..++..+.... .++.+.+.....+...|+.++.
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEIN 522 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444332221111 1144445555555555555555
Q ss_pred HHHHHHH
Q 001214 627 SLEKKID 633 (1122)
Q Consensus 627 ~l~~~l~ 633 (1122)
.+..+++
T Consensus 523 ~l~gkL~ 529 (594)
T PF05667_consen 523 SLTGKLD 529 (594)
T ss_pred HHHHHHH
Confidence 5555554
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.13 E-value=19 Score=40.78 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS------------KISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~------------~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
.+.+..|..++..|.+.+.+++..+.-+.++++..+ .+.+.+..+++.+..++.+|+.++..+-++.+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444444333321 34566777788889999999999999999999
Q ss_pred hHHHHHHHHHHhhcc
Q 001214 676 DMETENQILRQQSLL 690 (1122)
Q Consensus 676 ~Le~e~~~l~q~~~~ 690 (1122)
++..|-+..+.++-+
T Consensus 158 El~~ERD~yk~K~~R 172 (319)
T PF09789_consen 158 ELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888876544
No 154
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.91 E-value=20 Score=42.36 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.++.+.+++....+++..|...+.++.++...+..+++++..-|......-++++.+.++++++-.+.....+.-+.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777766666666555556667777777777777776666655544
No 155
>PRK01156 chromosome segregation protein; Provisional
Probab=90.90 E-value=67 Score=42.49 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++...++..+++++..+..++.+++.++..++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666665555553
No 156
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.74 E-value=31 Score=38.29 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..+.++.....+-..+++++..++.|+--|+||.
T Consensus 204 ne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 204 NEQDKVNKYIGKQESLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777778889999999999999999864
No 157
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.65 E-value=6.3 Score=47.15 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.5
Q ss_pred cchhHHhhchHHHHHHHhhccc
Q 001214 1001 SNGEYVKAGLAELELWCCQAKE 1022 (1122)
Q Consensus 1001 s~G~qIr~nls~Le~W~~~~~~ 1022 (1122)
+.-+-++.-=.++-+|+++.++
T Consensus 707 sed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhccH
Confidence 3445566666888999998763
No 158
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.49 E-value=37 Score=42.30 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1122)
...|..+++-++++...+.+.+.-+++..+++..
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~ 525 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQ 525 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 3444555555555555555555555555554444
No 159
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.42 E-value=34 Score=38.19 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
+|.++...+.....++..++.
T Consensus 162 el~aei~~lk~~~~e~~eki~ 182 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQ 182 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 160
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.42 E-value=24 Score=36.58 Aligned_cols=106 Identities=15% Similarity=0.230 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 572 MQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK 651 (1122)
Q Consensus 572 le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~ 651 (1122)
.+..++..++...........+.+++..+ ...+..|.....++.+..+..+..+..+..++.+.+..-.-...
T Consensus 93 iE~dLE~~eeraE~~Es~~~eLeEe~~~~-------~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aER 165 (205)
T KOG1003|consen 93 IEGELERAEERAEAAESQSEELEEDLRIL-------DSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAER 165 (205)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444444444433334444444443322 23455666777777777777777777777777777766666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
.+..+++.++.|+..+....++...+..++...
T Consensus 166 sVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 166 RVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888877777777653
No 161
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.38 E-value=4.3 Score=46.32 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+.....++++...++.++.-...+++.|++-
T Consensus 104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 104 LQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344455555566666666666666666653
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.31 E-value=40 Score=42.49 Aligned_cols=47 Identities=26% Similarity=0.156 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKID---ETEKKFEETSKISEERLKQALEAE 657 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~---ele~~~~e~~~~~~~~~~~l~~~~ 657 (1122)
..+|+.|+-.|+..+..|+..-- .+...+..++.+..-+..+++++.
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444322 233334444444444444444443
No 163
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.00 E-value=33 Score=43.76 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~ 672 (1122)
++.+.....+.+...+..+++..++.+..|+-++.-+..
T Consensus 124 ~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~k 162 (769)
T PF05911_consen 124 ELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSK 162 (769)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 164
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.81 E-value=57 Score=39.94 Aligned_cols=47 Identities=28% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 533 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES 579 (1122)
Q Consensus 533 LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~ 579 (1122)
|-.+|.+|...|...+...+-.|...+.|+.+|+.+++..+...+++
T Consensus 585 lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 585 LVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555543333333333334445555555554444444433
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.81 E-value=3.2 Score=44.14 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
.+.....++++++.+++.++.++.... .....++.+++......+.+|+++..+|++++..++.+++.++.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777776666655443 3445555666666666777777777777777777777777776654
No 166
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.75 E-value=40 Score=39.99 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK-QALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~-~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
...+...++.++..++.++.+++..+.+++........ ...+....+..++.++..++.++..++..++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444443333333222221 1233344555666666666666666666554
No 167
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.64 E-value=42 Score=38.20 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 527 QAAKNKLEKQVEELTWRLQLE 547 (1122)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~~e 547 (1122)
......+...+.++..+++.+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 168
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.62 E-value=11 Score=41.86 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA 656 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~ 656 (1122)
.+.|+.-..+++++...++-+++++.....|.+.+..++..++.++
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 169
>PLN02939 transferase, transferring glycosyl groups
Probab=89.54 E-value=38 Score=44.09 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
....+.-.+.+++++++.+..|.+|.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 374 IHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445555666666666666555554
No 170
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.40 E-value=33 Score=36.57 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKID-ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~-ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+....+.+.++.++.|+...+ .++....+...........+..++..++..+-.+..|+..+.....|++.|-
T Consensus 122 ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 122 EYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555544433 2233333333333333334444555555566666666666666666665553
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.40 E-value=67 Score=40.18 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1122)
.|+.++..+...+...+.-..++.+++.+++....
T Consensus 178 ~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~ 212 (617)
T PF15070_consen 178 KLTNENMELTSALQSEQHVKKELQKKLGELQEKLH 212 (617)
T ss_pred HHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333333333334444443333333
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.38 E-value=13 Score=43.17 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~~l 684 (1122)
..+.+...+++|.+|++++..+
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444555555555555443
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.34 E-value=1.1e+02 Score=42.46 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 001214 428 RIQRDLRMYLAKKAYKDMCF 447 (1122)
Q Consensus 428 ~IQ~~~R~~~~rk~y~~~r~ 447 (1122)
+-...|=|..+|..|+..+-
T Consensus 725 k~~a~~IG~~aR~~~R~~ri 744 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRRI 744 (1353)
T ss_pred CcchhHhhHHHHHHHHHHHH
Confidence 45566778888887775543
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=42 Score=41.94 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.++..++.+...++.+++.++..++++
T Consensus 794 v~El~~~l~e~~~~l~~~q~e~~~~keq 821 (970)
T KOG0946|consen 794 VIELLKNLSEESTRLQELQSELTQLKEQ 821 (970)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 3334333455555555555666555554
No 175
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.15 E-value=36 Score=43.40 Aligned_cols=15 Identities=7% Similarity=-0.084 Sum_probs=9.2
Q ss_pred CcCCCHHHHHHHHhc
Q 001214 1060 CPILSVQQLYRICTL 1074 (1122)
Q Consensus 1060 c~~Ls~~Qi~~il~~ 1074 (1122)
++..++-||.+-|..
T Consensus 946 y~~~~~~el~kkL~~ 960 (1200)
T KOG0964|consen 946 YQDKKSKELMKKLHR 960 (1200)
T ss_pred hccCCHHHHHHHHHH
Confidence 566677666665543
No 176
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.01 E-value=51 Score=38.23 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~ 689 (1122)
.++..+++.+..++-|.+|..+++.++...+
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888889999999988887543
No 177
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.95 E-value=73 Score=41.06 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.2
Q ss_pred CCCHHHHHHH
Q 001214 1084 SVSPNVISSM 1093 (1122)
Q Consensus 1084 ~v~~~~i~~l 1093 (1122)
.+.|---+.|
T Consensus 995 GMDp~NER~V 1004 (1072)
T KOG0979|consen 995 GMDPRNERKV 1004 (1072)
T ss_pred CCCchhHHHH
Confidence 4444444444
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.93 E-value=3.7 Score=42.79 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~ 672 (1122)
++.+++.+++..|-.++++++.+.++..+++++++.++..+...+..+..++..|++...+|+.
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3444555555555555555555555555555555544444443333333333333333333333
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.84 E-value=6.2 Score=45.02 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE-------SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~-------~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+..+++.+-.++.+++.+++++.+++.++..++..+..+++ .....++.++.+++++...++.......+
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444344444444444444444333333333333332 33334444444444444444444444443
No 180
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.83 E-value=4.8 Score=42.01 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 622 e~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+..++++.++.+++-+++.+++.+.++...+++.++.....|+++.+.+..++.+|+...
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 333333333334444444444444444444444444334444443333333333333333
No 181
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.67 E-value=47 Score=42.38 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=10.2
Q ss_pred EEEeeccceEEeccchhhhc
Q 001214 185 TICHYAGDVTYQTELFLDKN 204 (1122)
Q Consensus 185 ~i~H~ag~V~Y~~~~fl~kN 204 (1122)
.|-|-.|+|-|-..+...+|
T Consensus 244 ~vL~~ng~v~~~~~~l~~~~ 263 (717)
T PF10168_consen 244 FVLRENGDVYLLYTSLQDEN 263 (717)
T ss_pred EEEecCCCEEEEEEecccCc
Confidence 34555677655444443443
No 182
>PF13514 AAA_27: AAA domain
Probab=88.37 E-value=1.1e+02 Score=41.47 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 27 LDPEAAAVSRDALAKIVYSRLFDWLVEKIN 56 (1122)
Q Consensus 27 l~~~~a~~~rdalak~lY~~LF~wiV~~iN 56 (1122)
++.+.-...-..+-+.+|..+|.+=...+.
T Consensus 72 ~~e~~L~~~Lgg~dr~~f~~iF~~d~~~L~ 101 (1111)
T PF13514_consen 72 LPEDWLAALLGGLDRETFEAIFSFDHEELR 101 (1111)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHcCCHHHHH
Confidence 333333333455566777777765544433
No 183
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=87.93 E-value=69 Score=38.49 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001214 625 VSSLEKKIDETEK 637 (1122)
Q Consensus 625 l~~l~~~l~ele~ 637 (1122)
+.-++++++..++
T Consensus 142 l~Pl~e~l~~f~~ 154 (475)
T PRK10361 142 LSPLREQLDGFRR 154 (475)
T ss_pred HhhHHHHHHHHHH
Confidence 3333333333333
No 184
>PRK11281 hypothetical protein; Provisional
Probab=87.88 E-value=17 Score=48.47 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
+.....|+.|...++.+++-.+.++.
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554444443
No 185
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.83 E-value=1.3e+02 Score=41.70 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001214 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1122)
Q Consensus 526 L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee 596 (1122)
|......|.++...++..+..-+-....++.........+..++.+|+.++.++...++.+.+.++.+...
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555554434444444445555566777788888888888877777666666655543
No 186
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.75 E-value=49 Score=40.50 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.++.++..++.++..++.+.+.++
T Consensus 321 ~~~~~~~~l~~~~~~l~~~~~~~~ 344 (498)
T TIGR03007 321 EAEAEIASLEARVAELTARIERLE 344 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333
No 187
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.74 E-value=3.8 Score=43.37 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
.+++.++++...++++.+++..+..+|-+|.+.|+.+.
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34445555566666666666777777777777776654
No 188
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.71 E-value=47 Score=43.01 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSL 628 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l 628 (1122)
+..|..+...++.++.++
T Consensus 290 i~~L~~~l~~l~~~~~~l 307 (754)
T TIGR01005 290 IQRLRERQAELRATIADL 307 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 189
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=39 Score=40.25 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 560 QENAKLQSALQEMQL 574 (1122)
Q Consensus 560 ~e~~~L~~~l~~le~ 574 (1122)
.|+..|++.+..++.
T Consensus 338 ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 338 KENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 190
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.46 E-value=58 Score=41.16 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 523 TGALQAAKNKLEKQVEELTWRLQ 545 (1122)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~ 545 (1122)
+.+|+.....+|++...|...|+
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~ 289 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQ 289 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555555555555544444
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=10 Score=45.72 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=9.9
Q ss_pred HHHHhhcCCcchhhhhH
Q 001214 131 ILDLIEKKPGGIIALLD 147 (1122)
Q Consensus 131 ~idlie~~~~Gil~lLd 147 (1122)
+.+|..++. +|+.+|-
T Consensus 59 vyEL~~~~~-~li~il~ 74 (652)
T COG2433 59 VYELGADKR-DLIRILK 74 (652)
T ss_pred HHHHhcChh-HHHHHHH
Confidence 566666654 6666665
No 192
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.33 E-value=0.18 Score=65.36 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+..+..++..|..++.++...+.+..+.+.++++.+..+...+.+++..+..++..+...+..+.+++-++..+++
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666655555544444444444444444444444444444444444444444444444444433
No 193
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.24 E-value=25 Score=46.73 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
......++.|...++.+++.++.++.
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666555555544
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.10 E-value=81 Score=40.08 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 619 EKLKTLVSSLEKKIDETEKKFEET--SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 619 ~kLe~~l~~l~~~l~ele~~~~e~--~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
..+..++..++.++.++++++... +....++..++..++.++..++.++..++.++..++++++.++.+
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444321 234445555566666666666666666666776666666666553
No 195
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.97 E-value=70 Score=37.52 Aligned_cols=17 Identities=12% Similarity=0.388 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHHHHHH
Q 001214 947 HWQSIIDSLNTLLSTLK 963 (1122)
Q Consensus 947 ~~~~il~~L~~~~~~l~ 963 (1122)
+..++-.-|+.++.-|+
T Consensus 602 sledl~~~l~k~~~~l~ 618 (622)
T COG5185 602 SLEDLENELGKVIEELR 618 (622)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 196
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.93 E-value=9.7 Score=33.00 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
|+.++..|+..++.+..+++-.+.....+..+.+....++.++-. ++.+|.+++..|+.|++..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~-------e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE-------ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 455556666666666655555555555555555544444444443 3344444444444444443
No 197
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.79 E-value=72 Score=37.51 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+...+..+++|..+-.+|+.++..++
T Consensus 219 l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 219 LSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333444444444444444443
No 198
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.75 E-value=0.2 Score=64.89 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 524 GALQAAKNKLEKQVEELTWRLQL 546 (1122)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~ 546 (1122)
..+...+.+|+.++.+|+..+++
T Consensus 204 ~el~~~k~kL~~E~~eL~~qLee 226 (859)
T PF01576_consen 204 NELTEQKAKLQSENSELTRQLEE 226 (859)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555443
No 199
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.50 E-value=33 Score=33.26 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFK 577 (1122)
Q Consensus 565 L~~~l~~le~~l~ 577 (1122)
|...+..++.++.
T Consensus 21 L~s~lr~~E~E~~ 33 (120)
T PF12325_consen 21 LQSQLRRLEGELA 33 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 200
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.50 E-value=1.1e+02 Score=39.31 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001214 560 QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDE----- 634 (1122)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~e----- 634 (1122)
.+...++.++.+++.++..++.++.+....+-...++...+.....+....+..|.-+..+..+.+..+...+..
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~ 544 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANA 544 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence 444455555555555555555544332222222222222222122223344555555555555555555544432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 635 -TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 635 -le~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
....+..++.+...........+..+..|-.-+..++..-..++.++..|.
T Consensus 545 e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Le 596 (775)
T PF10174_consen 545 ELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELE 596 (775)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 122233333333333333334444444444444444444444444444333
No 201
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.40 E-value=95 Score=38.50 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 001214 470 QTRASILIQSHCRKYLARLHYMK 492 (1122)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1122)
.++++++.++.+..-..|.+...
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~~~ 107 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHKLL 107 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666543
No 202
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=20 Score=34.51 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKF---------------EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~---------------~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
.+.+...+..++..+.+.+..+++++.-- .+......++..+++.++..+..|+++.+.+++++.
T Consensus 22 l~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 22 LQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666665555544310 022334455666666777777777777777777777
Q ss_pred hHHHHHHHHHH
Q 001214 676 DMETENQILRQ 686 (1122)
Q Consensus 676 ~Le~e~~~l~q 686 (1122)
+|++++...-.
T Consensus 102 eLq~~i~~~l~ 112 (119)
T COG1382 102 ELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHhh
Confidence 77777765443
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.27 E-value=8 Score=33.49 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 620 kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+|+..+..|+..++.+..++...+.... .+...-+.....+...-..+.+|++|++.++++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k-------~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENK-------RLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555544433322 233333445556666667777777777777765
No 204
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.17 E-value=13 Score=34.79 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEK 630 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~ 630 (1122)
.++++.|+..+..|+.
T Consensus 36 ~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQA 51 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333333333333333
No 205
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.05 E-value=1.6e+02 Score=40.91 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++...+..+...+...+..+..|+.++.+|+.++.....
T Consensus 847 ~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 847 DELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333444444445555555555555555555554444
No 206
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.05 E-value=49 Score=37.26 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.++..++...+..+..++..+..-|
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 207
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.99 E-value=36 Score=38.37 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 001214 949 QSIIDSLNTLL 959 (1122)
Q Consensus 949 ~~il~~L~~~~ 959 (1122)
+.+-+++..++
T Consensus 286 ~~l~nl~~~l~ 296 (302)
T PF10186_consen 286 DTLGNLLNLLW 296 (302)
T ss_pred hhHHHHHHHHh
Confidence 33333333333
No 208
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.94 E-value=67 Score=37.26 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 514 RKLKMAARETGALQAAKNK 532 (1122)
Q Consensus 514 ~~lk~~a~~~~~L~~~~~~ 532 (1122)
.+|..+...+..++.....
T Consensus 8 ~KL~et~~~V~~m~~~L~~ 26 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEE 26 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444333
No 209
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.93 E-value=12 Score=31.51 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 642 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
+.........+|.+++.....|..++..|+.++.++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444443
No 210
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.73 E-value=7.8 Score=32.80 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+...++++..+...|..+..+++...+.|+.|++.+++
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666666666666666665
No 211
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.69 E-value=53 Score=34.94 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV-QLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~-~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
....+......++.++.+++.+.+.++.++.+++.+..++..+...+-..+. ...-..--|+.++..|.+.++.-.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777777777777766665544332221 222333345556666665555433
No 212
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=85.56 E-value=76 Score=36.60 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001214 616 SENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~ 637 (1122)
.-+++|+.+++.++..+...++
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 213
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.41 E-value=69 Score=36.02 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 638 KFEETSKISEERLKQALEAES-KIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 638 ~~~e~~~~~~~~~~~l~~~~~-~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
.+..+..++-++...++..+. -+..|.+.+..|..+-..|+..+.
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444444433 235566666666666666666654
No 214
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.37 E-value=46 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+++......+..+..+.+++..|+.+.+.++.+
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455555555555555555554
No 215
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.36 E-value=14 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFKESKEKL 583 (1122)
Q Consensus 565 L~~~l~~le~~l~~~~~~l 583 (1122)
|..++..++.+...+...+
T Consensus 10 le~rL~q~eee~~~a~~~L 28 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEAL 28 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 216
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=85 Score=36.74 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.++...+...+..|.+..+|-..|+++
T Consensus 392 kEi~gniRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 392 KEIDGNIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555553
No 217
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.95 E-value=40 Score=43.79 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCC-Ceeeee-------------cCCCCC--CCCCcccchhhh
Q 001214 248 FKQQLQQLLETLSSSE-PHYIRC-------------VKPNNL--LKPAIFENKNVL 287 (1122)
Q Consensus 248 f~~sl~~Lm~~l~~t~-~hfirC-------------ikpN~~--~~~~~fd~~~v~ 287 (1122)
.-..|..|+++|...+ -++|+| +-|++. +..+.||...+.
T Consensus 164 IPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~ 219 (1041)
T KOG0243|consen 164 IPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIV 219 (1041)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCccc
Confidence 3456777888887776 445666 456666 556667666433
No 218
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.93 E-value=1e+02 Score=37.46 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 487 RLHYMKLKKAAITTQCAWRGKVARREL--RKLKMAARETGALQAAKNKLEKQVEELTWRLQ 545 (1122)
Q Consensus 487 r~~~~~~~~a~i~iQ~~~R~~~ark~~--~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~ 545 (1122)
|..+..++..+...|+++-++..+++- ..+.....+++.-.+..+.+..+..+|...++
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555554443322 22333344444444445555566666655554
No 219
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=84.81 E-value=16 Score=33.96 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
|-.+..+|+....-|++.+-+...+..++...+......+..++.+++.|.=....|..++..|++|+...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777766666666666666555555566666666666666677777777777777644
No 220
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.38 E-value=1.2e+02 Score=38.12 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++..+++..-|.-.+..-+++|.+|++=...|+.
T Consensus 517 Le~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 517 LEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555554444444
No 221
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.26 E-value=13 Score=39.53 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
++.+++++++++..+++++++...+++..++....+.++.++.+.+.+.+-++-..|++++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555555555666666556666666555555553
No 222
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=84.12 E-value=85 Score=35.96 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~ 679 (1122)
.++..+++....+.....+..++.....++.............+.+-+.++..++.+...|+.++..|+.
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655555555555554444444444444444555555555555555555553
No 223
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.06 E-value=1.1e+02 Score=37.39 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.....|+.+++.+..++...=+++...|++
T Consensus 342 ~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 342 ESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555553
No 224
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.55 E-value=21 Score=36.11 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001214 677 METENQILR 685 (1122)
Q Consensus 677 Le~e~~~l~ 685 (1122)
.+.|++.|+
T Consensus 138 ke~E~~kLk 146 (151)
T PF11559_consen 138 KEREIEKLK 146 (151)
T ss_pred HHHHHHHHH
Confidence 333333333
No 225
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.42 E-value=1.3e+02 Score=37.45 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=14.1
Q ss_pred hccCcCCCHHHHH-------HHHhccccCCC
Q 001214 1057 NDLCPILSVQQLY-------RICTLYWDDNY 1080 (1122)
Q Consensus 1057 ~~~c~~Ls~~Qi~-------~il~~Y~~d~~ 1080 (1122)
++.|++|-.-+|. +|-+.|.+.++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~ 661 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPD 661 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCc
Confidence 4667777766664 44556664333
No 226
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.00 E-value=62 Score=33.58 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 635 le~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+++..+..+...+...+.+.+..+..+..++...+.+...+...+..++.
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444445555555555555555555555554
No 227
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.91 E-value=1e+02 Score=38.37 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+..+++++..+++++.++-.++...|+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544
No 228
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.16 E-value=15 Score=35.88 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
|...+++|.++++.+-.++++..+-.+..+.+..++...+......+..++..+..|+.+|.+++
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555444444444444444444444444444455555555444443
No 229
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.13 E-value=30 Score=39.08 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
.|-.++..|--+++-|+..++++++.+..+.++..+....++-.......++.++..|++++...
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777777777776666555555555555566666666666665443
No 230
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.05 E-value=79 Score=39.10 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1122)
+..+..++++|....++|+.++++++
T Consensus 232 l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 232 LEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444555555555555555555444
No 231
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.95 E-value=99 Score=35.16 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
+..+..++.++..++..+.....+...
T Consensus 261 ~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 232
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.64 E-value=81 Score=33.95 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---------HHHHHHHHHHHHHHHhHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKI---------VQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~--~~~~~---------~~l~~~~~~le~~i~~Le 678 (1122)
.+..+......+...++.|+..+.+++.++.+++.....+..+... ++.++ ......+.+++++|..++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~e 178 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555554444444333221 12221 233445555555555555
Q ss_pred HHHHHH
Q 001214 679 TENQIL 684 (1122)
Q Consensus 679 ~e~~~l 684 (1122)
.+....
T Consensus 179 a~a~a~ 184 (221)
T PF04012_consen 179 ARAEAS 184 (221)
T ss_pred HHHHHH
Confidence 554443
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.54 E-value=85 Score=34.09 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=12.3
Q ss_pred hCCCCccChHHHHHHHh
Q 001214 304 AGYPTRKPFDEFVDRFG 320 (1122)
Q Consensus 304 ~g~p~r~~~~~F~~ry~ 320 (1122)
-.||+|-.+++|+..-+
T Consensus 122 idfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 122 IDFPSRHDWDDFFMDAK 138 (445)
T ss_pred CCCCcccchHHHHhhhh
Confidence 35888888888876543
No 234
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.26 E-value=84 Score=33.89 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-----------VQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~-----------~~l~~~~~~le~~i~~ 676 (1122)
......+..+...++..++.|+..+.+++.++.+.+.....+..+...++... ......++++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777766666655554443321 2333444555555555
Q ss_pred HHHHHH
Q 001214 677 METENQ 682 (1122)
Q Consensus 677 Le~e~~ 682 (1122)
++.+.+
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 554443
No 235
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.19 E-value=1.2e+02 Score=35.69 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1122)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~ 545 (1122)
-.+..|+-.+.-||+++++|+.+..
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhh
Confidence 3445666667778888888876655
No 236
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=1.3e+02 Score=36.04 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001214 564 KLQSALQEMQLQFK 577 (1122)
Q Consensus 564 ~L~~~l~~le~~l~ 577 (1122)
+|+.++..++.++.
T Consensus 111 eleneLKq~r~el~ 124 (772)
T KOG0999|consen 111 ELENELKQLRQELT 124 (772)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 237
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.88 E-value=72 Score=34.69 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
+.|..|+..+.++|......+..+|..+...+.+..+ .+..+..+.+++..|.++|.++..+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~-------~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNK-------RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555544444443 3333444555666666666666666
No 238
>PRK11281 hypothetical protein; Provisional
Probab=80.85 E-value=58 Score=43.58 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKF 639 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1122)
.|+.....+++.+++.++.+.+....+
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555444333
No 239
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.84 E-value=15 Score=38.66 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETENQILR 685 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le----~~i~~Le~e~~~l~ 685 (1122)
.+..|.+++..++..+.+++.+++.......+. .+...+..++.+++.++..++.++..+. +.+..+++++...+
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443322222 2334455555666666666666666443 25666666666666
Q ss_pred Hh
Q 001214 686 QQ 687 (1122)
Q Consensus 686 q~ 687 (1122)
..
T Consensus 149 ~~ 150 (188)
T PF03962_consen 149 EA 150 (188)
T ss_pred HH
Confidence 54
No 240
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.83 E-value=50 Score=31.00 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1122)
+..|..+.....+.+.+|+.++.++...+..
T Consensus 46 l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555544444433
No 241
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.60 E-value=14 Score=32.41 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001214 618 NEKLKTLVSSL 628 (1122)
Q Consensus 618 ~~kLe~~l~~l 628 (1122)
+.-|+-++++|
T Consensus 20 I~LLqmEieEL 30 (79)
T PRK15422 20 ITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 242
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.52 E-value=1e+02 Score=38.54 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001214 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRV---DMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1122)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~---~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~e 595 (1122)
++....+|.......|+++.++...+.+....-. .-+....+....+...+++|..+.++...+..+-..+.+++-+
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666655553221111 1111222344445555555555554444443333334444433
Q ss_pred h
Q 001214 596 K 596 (1122)
Q Consensus 596 e 596 (1122)
+
T Consensus 139 ~ 139 (660)
T KOG4302|consen 139 E 139 (660)
T ss_pred H
Confidence 3
No 243
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.31 E-value=28 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
....++.++...+....+|..+|..|+.+++.++
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555555555555555544
No 244
>PF13514 AAA_27: AAA domain
Probab=80.20 E-value=1.7e+02 Score=39.85 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=17.4
Q ss_pred chhhhHHHHhhCCCCccChHHHHH
Q 001214 294 GVMEAIRISCAGYPTRKPFDEFVD 317 (1122)
Q Consensus 294 gvle~iri~~~g~p~r~~~~~F~~ 317 (1122)
=++..|+-.-.|||.|-+|. |+.
T Consensus 11 T~l~fI~~lLFGfp~r~~~~-f~~ 33 (1111)
T PF13514_consen 11 TLLAFIRDLLFGFPTRSPYN-FYH 33 (1111)
T ss_pred HHHHHHHHHhcCCCCCCCcc-cCC
Confidence 35667777789999998887 644
No 245
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.03 E-value=1.5e+02 Score=35.90 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=10.0
Q ss_pred CcchhHHHHHHHHHHHHHhc
Q 001214 241 FSSIGSRFKQQLQQLLETLS 260 (1122)
Q Consensus 241 ~~tv~~~f~~sl~~Lm~~l~ 260 (1122)
+++|..+...+|+.|-+.+.
T Consensus 166 ~s~v~~~l~~~l~~l~d~~k 185 (518)
T PF10212_consen 166 YSAVFTQLAASLHKLHDVLK 185 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 246
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.65 E-value=1.9e+02 Score=37.09 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHhHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA--ESKI-----VQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~--~~~~-----~~l~~~~~~le~~i~~Le~e 680 (1122)
...+.+|...+...+.++.+|..+++..++....++.+..-+.+.|+-- +... ....++--+-=.+|.+|+.|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999998888887776665322 1111 11111111122388899999
Q ss_pred HHHHHH
Q 001214 681 NQILRQ 686 (1122)
Q Consensus 681 ~~~l~q 686 (1122)
=..||-
T Consensus 199 C~rLr~ 204 (769)
T PF05911_consen 199 CQRLRA 204 (769)
T ss_pred HHHHHH
Confidence 988876
No 247
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.59 E-value=1.8e+02 Score=36.73 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
......+.++..++++++.....+.++.+++..++.++
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQA 885 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence 33445566677777777777777777777777776543
No 248
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.26 E-value=1.5e+02 Score=36.28 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFKESK 580 (1122)
Q Consensus 565 L~~~l~~le~~l~~~~ 580 (1122)
|..++.+|+..+..++
T Consensus 179 LmaevSeLKLkltalE 194 (861)
T KOG1899|consen 179 LMAEVSELKLKLTALE 194 (861)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3444444444444443
No 249
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.13 E-value=1.6e+02 Score=35.91 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
.+.++..|+++.+..++....+-+..+.
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444443
No 250
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.03 E-value=95 Score=38.11 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1122)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1122)
.....+.+++.+.+-+...++...+-....+.. ..+.-.++......++.++.+.+.++.+.|.++.+
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~------------~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~q 87 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEA------------LLEAKEEVHKLRAELERELKERRNELQRLERRLLQ 87 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 642 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+..+++....++..++.+...+.++...+.++.+++++...+.++
T Consensus 88 Ree~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 251
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.96 E-value=43 Score=35.31 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001214 667 MHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 667 ~~~le~~i~~Le~e~~~l~q 686 (1122)
...|..+++.|..|+..+++
T Consensus 133 ~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQ 152 (202)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554
No 252
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.53 E-value=1.4e+02 Score=39.13 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=19.7
Q ss_pred hhHHHHhhCCCCccChHHHHH--HHhhhhhcc
Q 001214 297 EAIRISCAGYPTRKPFDEFVD--RFGILASKV 326 (1122)
Q Consensus 297 e~iri~~~g~p~r~~~~~F~~--ry~~l~~~~ 326 (1122)
++..-..+-|..+.+|-|.+. -|.+|+|+.
T Consensus 173 d~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 173 DTLEAQGAEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred HHHHhcCCeEEEEEEehhhhhHHHHHhcCCcc
Confidence 444444456888888888773 566777653
No 253
>PF15456 Uds1: Up-regulated During Septation
Probab=78.14 E-value=35 Score=33.29 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-----------KQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~-----------~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
..++++.|.+|...|...++.++.++. ++.++.+.-.....+- ..+.+.+..+....+.++++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999999999999999999888 6666655444333320 1234455555666666666666666
Q ss_pred hHHHHHHHHHHh
Q 001214 676 DMETENQILRQQ 687 (1122)
Q Consensus 676 ~Le~e~~~l~q~ 687 (1122)
.++......++.
T Consensus 99 ~le~R~~~~~~r 110 (124)
T PF15456_consen 99 KLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 254
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=78.07 E-value=96 Score=36.61 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001214 453 QTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 490 (1122)
Q Consensus 453 Qs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~ 490 (1122)
+.++--+.+-.++.+...+.||.++|..|.-|+..+-+
T Consensus 346 EKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~ 383 (489)
T KOG3684|consen 346 EKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLV 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555556666666777888888888888766554
No 255
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.07 E-value=27 Score=38.49 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
+++.+..+...|..++..++.+++.++...+.+++......+++.+++.++..++....++..-+...
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555554444444444444444444444444444444443333333
No 256
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.80 E-value=71 Score=30.99 Aligned_cols=11 Identities=27% Similarity=0.441 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001214 564 KLQSALQEMQL 574 (1122)
Q Consensus 564 ~L~~~l~~le~ 574 (1122)
.++.++..++.
T Consensus 34 ~l~~el~~l~~ 44 (120)
T PF12325_consen 34 SLQEELARLEA 44 (120)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 257
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.71 E-value=1.5e+02 Score=34.79 Aligned_cols=83 Identities=23% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 515 KLKMAARETGALQAAKNKLEKQVEELTWRLQLEK-----RMRVDMEEAKTQENAKL-QSALQEMQLQFKESKEKLMKEIE 588 (1122)
Q Consensus 515 ~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~-----~~~~~le~~~~~e~~~L-~~~l~~le~~l~~~~~~l~~e~~ 588 (1122)
.+.+-..-+.+|......+..++.++++.-+.-+ ....-.++.+..|.+.- -.++++++..+....++.+...+
T Consensus 287 ~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~ee 366 (521)
T KOG1937|consen 287 ALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEE 366 (521)
T ss_pred hcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444445555666666666666666665544221 11111111111222211 24566666666666555543333
Q ss_pred HHHHHHhhc
Q 001214 589 VAKKEAEKV 597 (1122)
Q Consensus 589 ~~~~~~ee~ 597 (1122)
...++..++
T Consensus 367 l~~~Lrsel 375 (521)
T KOG1937|consen 367 LAEKLRSEL 375 (521)
T ss_pred HHHHHHHHH
Confidence 333444333
No 258
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=77.57 E-value=94 Score=32.27 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL---KQ-ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~---~~-l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+..|...+.+|+++..+|+.-.--+.....+-++...+-+ .- ..-.++++..++.++++|+.+.++|-.||..|+.
T Consensus 57 IR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444445555555555555443333332222222111111 11 2334677888999999999999999999999988
Q ss_pred hhc
Q 001214 687 QSL 689 (1122)
Q Consensus 687 ~~~ 689 (1122)
--+
T Consensus 137 lcl 139 (195)
T PF10226_consen 137 LCL 139 (195)
T ss_pred HHH
Confidence 543
No 259
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.53 E-value=9.8 Score=39.24 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.+..+..++..|++++.+++.....++.++..+..... ..++...+..++.++..+++.++.++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t------------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT------------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555554444444443332211 133555666666666666666666665
No 260
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.27 E-value=80 Score=37.03 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~ 681 (1122)
...+.++.+|++++.+|---+
T Consensus 431 ~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHhHheeh
Confidence 344555555555555544333
No 261
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.26 E-value=0.75 Score=58.76 Aligned_cols=8 Identities=25% Similarity=0.733 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 001214 313 DEFVDRFG 320 (1122)
Q Consensus 313 ~~F~~ry~ 320 (1122)
.+|+.+-.
T Consensus 129 e~yI~~I~ 136 (713)
T PF05622_consen 129 EEYIQRIM 136 (713)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 262
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.78 E-value=51 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+++..+..+..++++++.++.++.+++.++..+
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555443
No 263
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.76 E-value=56 Score=35.86 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1122)
+.+..+|+..|++-++-++..|.+.++
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 345567777788888777777665544
No 264
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.34 E-value=1.4e+02 Score=33.54 Aligned_cols=10 Identities=10% Similarity=0.591 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001214 569 LQEMQLQFKE 578 (1122)
Q Consensus 569 l~~le~~l~~ 578 (1122)
+.+++.++..
T Consensus 140 I~~L~k~le~ 149 (294)
T COG1340 140 IKELRKELED 149 (294)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 265
>PLN02939 transferase, transferring glycosyl groups
Probab=76.14 E-value=1.8e+02 Score=38.31 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=9.8
Q ss_pred cCCCcchhhHHHhHH
Q 001214 809 EDDNDHMAYWLSNTS 823 (1122)
Q Consensus 809 ~~d~~~l~fWLsN~~ 823 (1122)
..|+-..==|-+...
T Consensus 610 ~PDIIH~HDW~TaLV 624 (977)
T PLN02939 610 KPDIIHCHDWQTAFV 624 (977)
T ss_pred CCCEEEECCccHHHH
Confidence 356666667777664
No 266
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.94 E-value=23 Score=35.69 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1122)
+....|..++.+|++.+.++.......+.++.++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666665555555555555444443
No 267
>PRK10698 phage shock protein PspA; Provisional
Probab=75.90 E-value=1.2e+02 Score=32.77 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHh
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK--I---------VQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~--~---------~~l~~~~~~le~~i~~ 676 (1122)
...+..|..+....+..++.|+..+..++.++.+.+.....+..+...++.. + ...-.....++++|.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 3455666666666666667777777777777766666666665554433322 1 1222344556666666
Q ss_pred HHHHHHH
Q 001214 677 METENQI 683 (1122)
Q Consensus 677 Le~e~~~ 683 (1122)
++.+.+.
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 6655554
No 268
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=75.46 E-value=1.7e+02 Score=36.09 Aligned_cols=7 Identities=14% Similarity=0.021 Sum_probs=2.9
Q ss_pred HHHhccc
Q 001214 1070 RICTLYW 1076 (1122)
Q Consensus 1070 ~il~~Y~ 1076 (1122)
+.|+.|.
T Consensus 743 ~~l~~Fq 749 (811)
T KOG4364|consen 743 RELSDFQ 749 (811)
T ss_pred HHHHhcc
Confidence 3444443
No 269
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.43 E-value=1.5e+02 Score=34.61 Aligned_cols=6 Identities=33% Similarity=0.933 Sum_probs=2.7
Q ss_pred hhhhHH
Q 001214 502 CAWRGK 507 (1122)
Q Consensus 502 ~~~R~~ 507 (1122)
.-||.+
T Consensus 216 kDWR~h 221 (359)
T PF10498_consen 216 KDWRSH 221 (359)
T ss_pred chHHHH
Confidence 344444
No 270
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.95 E-value=1.7e+02 Score=34.03 Aligned_cols=21 Identities=10% Similarity=0.414 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEKL 583 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l 583 (1122)
....++++.+..++++++.++
T Consensus 305 e~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 305 ETSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555443
No 271
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=74.66 E-value=86 Score=30.39 Aligned_cols=55 Identities=29% Similarity=0.418 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+-+.+.....+...+...........+..+..++..|+..+..+++.+..+..
T Consensus 55 lken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 55 LKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333445555666666666676777777666666543
No 272
>PRK04406 hypothetical protein; Provisional
Probab=72.70 E-value=26 Score=30.95 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 621 LKTLVSSLEKKIDETEKKFEE 641 (1122)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e 641 (1122)
+++.+.+|+.++.-.+..+.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~ 29 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEE 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 273
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.69 E-value=77 Score=30.15 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+++..+..+..++++...++.++.+++.++.
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 274
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.02 E-value=61 Score=31.23 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccc
Q 001214 566 QSALQEMQLQFKESKEKLM---KEIEVAKKEAEKVPVVQ 601 (1122)
Q Consensus 566 ~~~l~~le~~l~~~~~~l~---~e~~~~~~~~ee~~~~~ 601 (1122)
-.+...++.+++....++. .......+..+++..+.
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~ 50 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD 50 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444556666655544332 34444445555554443
No 275
>PF13166 AAA_13: AAA domain
Probab=71.72 E-value=3e+02 Score=35.34 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
++..+..++..+..++..+..++.++..++.+
T Consensus 422 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 422 LEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555543
No 276
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=71.44 E-value=15 Score=33.11 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..|++.+++.+...+.+++..+.++...+- ..+.-..+++++..+.+.+...+++++.|+++|
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eL-----------s~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRREL-----------SPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCC-----------ChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 345666666666666666666655433210 011223466777777788888888888888754
No 277
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.37 E-value=86 Score=29.17 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+.....++.+++.++.++..++.++..++
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444
No 278
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.31 E-value=1.4e+02 Score=31.42 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=5.8
Q ss_pred hhhhhhhHHHHH
Q 001214 499 TTQCAWRGKVAR 510 (1122)
Q Consensus 499 ~iQ~~~R~~~ar 510 (1122)
.+.|.-||.+..
T Consensus 76 Ti~C~ERGlLL~ 87 (189)
T PF10211_consen 76 TIDCPERGLLLL 87 (189)
T ss_pred HhCcHHHhHHHH
Confidence 444555555443
No 279
>PTZ00121 MAEBL; Provisional
Probab=71.10 E-value=3.9e+02 Score=36.39 Aligned_cols=7 Identities=43% Similarity=1.141 Sum_probs=2.9
Q ss_pred eeeecCC
Q 001214 266 YIRCVKP 272 (1122)
Q Consensus 266 firCikp 272 (1122)
|-+|+-|
T Consensus 826 ySyClgp 832 (2084)
T PTZ00121 826 YSYCLGP 832 (2084)
T ss_pred HHhhcCc
Confidence 3344444
No 280
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.97 E-value=89 Score=36.40 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+.+..+....+.++...+.++.++++..++
T Consensus 284 ~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 284 EVQEKYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444433
No 281
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.88 E-value=2.6e+02 Score=34.39 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 522 ETGALQAAKNKLEKQVEELTWRLQL 546 (1122)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~~l~~ 546 (1122)
+...+++....++.++..|+..+..
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~ 214 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIED 214 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666677777666554443
No 282
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.80 E-value=1.1e+02 Score=29.81 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++..+++..+..+..++++...++.++.+++..+..+-+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666777777777777777777666554
No 283
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.65 E-value=1.1e+02 Score=32.29 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 523 TGALQAAKNKLEKQVEELTWRLQL 546 (1122)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~ 546 (1122)
+..|.+....++.++.+++.+++.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555443
No 284
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=70.36 E-value=1.8e+02 Score=36.86 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=9.3
Q ss_pred CcchhhH-HHhHHHHHHHHHH
Q 001214 812 NDHMAYW-LSNTSTLLFLLQR 831 (1122)
Q Consensus 812 ~~~l~fW-LsN~~~Ll~~lq~ 831 (1122)
+..+..| ..++-.+..+|+.
T Consensus 480 V~~~t~~~V~s~~~v~~ll~~ 500 (670)
T KOG0239|consen 480 VPLLTVIKVGSSEEVDILLEI 500 (670)
T ss_pred cccceEEecCCHHHHHHHHHH
Confidence 3344444 4445555555543
No 285
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.23 E-value=14 Score=43.83 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=8.7
Q ss_pred cCCCHHHHHHHHhcccc
Q 001214 1061 PILSVQQLYRICTLYWD 1077 (1122)
Q Consensus 1061 ~~Ls~~Qi~~il~~Y~~ 1077 (1122)
+.+||-|+.+=+....+
T Consensus 444 ~~~~~d~~~~~~~~l~~ 460 (475)
T PRK13729 444 NGFNTDQMLKQLGNLNP 460 (475)
T ss_pred CCCCHHHHHHHHhcCCc
Confidence 34555555555555444
No 286
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.17 E-value=2.3e+02 Score=33.47 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=11.2
Q ss_pred HHHHHhhhHHHhhhhhhhHHH
Q 001214 488 LHYMKLKKAAITTQCAWRGKV 508 (1122)
Q Consensus 488 ~~~~~~~~a~i~iQ~~~R~~~ 508 (1122)
.+|+.+.......|+..-++.
T Consensus 302 ek~r~l~~D~nk~~~~~~~mk 322 (622)
T COG5185 302 EKWRALKSDSNKYENYVNAMK 322 (622)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 345555555566666555443
No 287
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.15 E-value=2.2e+02 Score=33.54 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 001214 660 IVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le 678 (1122)
.+++++-++..+.+|.++|
T Consensus 300 aRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 300 ARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777
No 288
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.87 E-value=85 Score=36.40 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 527 QAAKNKLEKQVEELTWRLQ 545 (1122)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~ 545 (1122)
...+.+.+.+++++..++.
T Consensus 5 ~s~~s~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 5 YSQKSENDQRLIDLNTELA 23 (459)
T ss_pred hhhhhhhhhHHHHHHHHHH
Confidence 3344455555555554444
No 289
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.85 E-value=1.2e+02 Score=38.42 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 001214 948 WQSIIDSLNTLLSTLKQN 965 (1122)
Q Consensus 948 ~~~il~~L~~~~~~l~~~ 965 (1122)
++.=+..|+.+...|...
T Consensus 569 INkSLS~LgdVi~AL~~k 586 (670)
T KOG0239|consen 569 INKSLSALGDVISALASK 586 (670)
T ss_pred hchhhhhhHHHHHHHhhc
Confidence 344455555555555443
No 290
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=69.62 E-value=1.9e+02 Score=32.31 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~ 642 (1122)
+..+.++.+-+.++.+++...+.+.....+-...-.+ -++.+..+..++--|++.+++...+...-++.+-.+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes-------~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES-------LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555555555555555555444444433322111 256778888899999999998888877777666666
Q ss_pred HHHHHHHHHHH
Q 001214 643 SKISEERLKQA 653 (1122)
Q Consensus 643 ~~~~~~~~~~l 653 (1122)
.....+....+
T Consensus 255 Q~~f~d~~~~L 265 (305)
T PF14915_consen 255 QDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHH
Confidence 66555444443
No 291
>PRK10869 recombination and repair protein; Provisional
Probab=69.60 E-value=2.9e+02 Score=34.35 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+..+..|+.++..+.+++..+-+++...|++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554
No 292
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.46 E-value=72 Score=29.67 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
..+..+.+.++..+..+++.++.++.++.+++..+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666666666666654
No 293
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=69.25 E-value=2.4e+02 Score=33.28 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 482 RKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQE 561 (1122)
Q Consensus 482 R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e 561 (1122)
++..++..-..+|..+-.+=...+..+-...-.--....+++...+.++.+||.++.+....+. ....+
T Consensus 212 ~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~-----------~~e~~ 280 (384)
T PF03148_consen 212 RAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIA-----------EMEKN 280 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1122)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1122)
+..|++.+.+...-+.-++..+..... .|.. -......|..|+..|++.+..|+.++.+.+..
T Consensus 281 i~~L~~ai~~k~~~lkvaqTRL~~R~~--------------RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 281 IEDLEKAIRDKEGPLKVAQTRLENRTQ--------------RPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHhc--------------CCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 639 FEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1122)
Q Consensus 639 ~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i 674 (1122)
+..+......+...+......+.--+.....++..+
T Consensus 347 l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R~~~ 382 (384)
T PF03148_consen 347 LQKLERTRLRLEEDIAVKNNSLFIDRERCMQLRRRY 382 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC
No 294
>PRK00846 hypothetical protein; Provisional
Probab=69.23 E-value=34 Score=30.32 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001214 665 TAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 665 ~~~~~le~~i~~Le~e~~ 682 (1122)
..+..|+.++..|.+.+.
T Consensus 41 ~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 41 LTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 295
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.15 E-value=1.5e+02 Score=30.83 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001214 573 QLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID-ETEKKFEETSKISEERLK 651 (1122)
Q Consensus 573 e~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~-ele~~~~e~~~~~~~~~~ 651 (1122)
+.+++...-.......+.+...... .......+..+..+|+.+++.++.++. +..+-.+++.-+.+....
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~---------~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~ 116 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNS---------RKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKG 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 001214 652 QALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1122)
Q Consensus 652 ~l~~~~~~~-~~l~~~~~~le~~i~~Le~e~~~l~q~~~~ 690 (1122)
++.+..... .+++.--..+..+|..++.+++..+-+.+.
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 296
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.01 E-value=2.1e+02 Score=32.60 Aligned_cols=78 Identities=13% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.++..+...-+.+-.+.+..++.+.+.+.+++..++++...+..+-+.....+..+-.+...+...+..++..+..|+
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555556666666666666777777777666666666555555555555555555555555555544
No 297
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=68.92 E-value=37 Score=40.42 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
..++.++|.+.+++..+.++...+++++++.+.+-+.++..|+..|+.-+...++++++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33445666666666667777777777777777777777777777777777777777765
No 298
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=68.85 E-value=2.1e+02 Score=32.32 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 530 KNKLEKQVEELTWRLQLEK 548 (1122)
Q Consensus 530 ~~~LE~kv~el~~~l~~e~ 548 (1122)
.+.||++.+.|+++++.+.
T Consensus 141 t~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEI 159 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777543
No 299
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.65 E-value=2.7e+02 Score=33.64 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
....++.+.+.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666655544
No 300
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.58 E-value=59 Score=35.15 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
...|+.....++..+..++++++++...++..+.. ...++..++.+...+-.++-+++..+..|+.|+..++++
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~---~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE---AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666665555544433322 233455666666666666666777777777777666654
No 301
>PRK02119 hypothetical protein; Provisional
Probab=68.43 E-value=33 Score=30.12 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 621 LKTLVSSLEKKIDETEKKFEE 641 (1122)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e 641 (1122)
+++.+.+|+.++.-.++.+.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~ 27 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEE 27 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 302
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.34 E-value=4e+02 Score=35.43 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHh
Q 001214 950 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLF 988 (1122)
Q Consensus 950 ~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lf 988 (1122)
..+..++.+-..+...++...+...+..++....|..+.
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 778 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEILS 778 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554443
No 303
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.18 E-value=81 Score=33.24 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 619 EKLKTLVSSLEKKIDE 634 (1122)
Q Consensus 619 ~kLe~~l~~l~~~l~e 634 (1122)
.+++..+.+++.++.+
T Consensus 127 ~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 127 KELESEIKELEMKILE 142 (190)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 304
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.14 E-value=60 Score=34.22 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 001214 665 TAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 665 ~~~~~le~~i~~Le~e~~~l 684 (1122)
.++.+++..+..++++....
T Consensus 159 ~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 305
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=68.04 E-value=3.6e+02 Score=34.89 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
.++..|+++.+..++....+-+..+.
T Consensus 376 ~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 376 VDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333
No 306
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.78 E-value=2.4e+02 Score=32.70 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccccc
Q 001214 531 NKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE--------KLMKEIEVAKKEAEKVPVVQE 602 (1122)
Q Consensus 531 ~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~--------~l~~e~~~~~~~~ee~~~~~e 602 (1122)
.+.-.+..++-.-+++...+....-++...+...|..++.+..++++.+.. .-+.-..-.+.-.++..+++-
T Consensus 9 ~e~nqkrk~~~~a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa 88 (542)
T KOG0993|consen 9 QEFNQKRKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQA 88 (542)
T ss_pred HHHHHhhhhcccchhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHH
Q ss_pred cchh------------hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 603 VPVI------------DHAVVEELTSENEKLKTLVSSLEKKID------ETEKKFEETSKISEERLKQALEAESKIVQLK 664 (1122)
Q Consensus 603 ~~~~------------~~~~~~~L~~e~~kLe~~l~~l~~~l~------ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~ 664 (1122)
.... -+.....+..--.+++.++.+++..+. .+++...+......++..-+.-.++.+..+.
T Consensus 89 ~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk 168 (542)
T KOG0993|consen 89 SQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELK 168 (542)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001214 665 TAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 665 ~~~~~le~~i~~Le~e~~ 682 (1122)
+.+.+.++.|.+|+.+.+
T Consensus 169 ~kl~~aE~~i~El~k~~~ 186 (542)
T KOG0993|consen 169 KKLAKAEQRIDELSKAKH 186 (542)
T ss_pred HHHHhHHHHHHHHHhhhc
No 307
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.50 E-value=2e+02 Score=31.73 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
..+.+++..-++.|..+++++..|+.+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677776666663
No 308
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.40 E-value=55 Score=35.99 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+..++|++++....++..|+.++..|+.+|-.|
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 309
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.12 E-value=28 Score=30.18 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001214 633 DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 633 ~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~ 676 (1122)
.++|.+++-.+...+++...+..-+..+..|+..+..|.+++.+
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444444443333
No 310
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.69 E-value=55 Score=38.96 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~ 645 (1122)
+.+..|-.+.+.++.+++.+..+++.+.++.+++.+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455554444444444444444433
No 311
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.68 E-value=1.1e+02 Score=28.71 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 623 TLVSSLEKKIDETEK 637 (1122)
Q Consensus 623 ~~l~~l~~~l~ele~ 637 (1122)
.++..|+....-+.+
T Consensus 5 ~eYsKLraQ~~vLKK 19 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKK 19 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344433333333
No 312
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.66 E-value=99 Score=29.37 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+++++..++..++.++.++..+++++..+++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554
No 313
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.44 E-value=31 Score=32.60 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
.+.+-.+-.+...+..++++++.+-..+.+++..+.... ....++..+...+..++..+++++..+++++..
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777766665555555444321 112233344445555555555555555555544
No 314
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.25 E-value=58 Score=33.55 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
+..|..+...|+..+..++.++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 315
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=66.12 E-value=77 Score=32.98 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMR----VDMEEAKTQENAKLQSALQEMQLQFK 577 (1122)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~----~~le~~~~~e~~~L~~~l~~le~~l~ 577 (1122)
+..+...|.-.+.+||.++.++..+++..+.+. .-.|.....++.-|++.+..|+++++
T Consensus 190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677778888888888888877544322 22222333455556665666555554
No 316
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.07 E-value=4.2e+02 Score=34.88 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.++......+++..++.+++.....+
T Consensus 447 ~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 447 DSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 344444444444445555555444443
No 317
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.06 E-value=2 Score=55.17 Aligned_cols=7 Identities=29% Similarity=0.857 Sum_probs=3.4
Q ss_pred HHHHhcc
Q 001214 1069 YRICTLY 1075 (1122)
Q Consensus 1069 ~~il~~Y 1075 (1122)
++|-++|
T Consensus 656 ~rl~S~y 662 (722)
T PF05557_consen 656 VRLTSMY 662 (722)
T ss_dssp EEEEETT
T ss_pred EEEEecc
Confidence 4444555
No 318
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.02 E-value=1.6e+02 Score=30.06 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
-++++-..+..+..+++.....+..-++.++..+.+..--+.=|...+..+...++.++
T Consensus 95 ~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 95 MLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444444443
No 319
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.01 E-value=1.9e+02 Score=32.22 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~ 657 (1122)
+..+..+....+..++++...-..++.++++...+.+...+++..++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555543
No 320
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.74 E-value=1.2e+02 Score=34.26 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~ 676 (1122)
-..|.-+++.|+..++++++.+.++.+++.+..++...+......++.++..|+.++...++-|.+
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888887777777777777788888888999999888887743
No 321
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=65.25 E-value=2.1 Score=54.94 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 561 ENAKLQSALQEMQLQFKESKE 581 (1122)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~ 581 (1122)
+...++-++..|+.++..|..
T Consensus 306 el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 306 ELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666554
No 322
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.18 E-value=42 Score=29.05 Aligned_cols=29 Identities=7% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
+.+.+..+..+++++.-|-+++..++.++
T Consensus 31 laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 31 LAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33344444445555555555555544433
No 323
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=65.18 E-value=3.1e+02 Score=33.10 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
....++...+.++..+++++...+..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544444
No 324
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=65.08 E-value=2e+02 Score=30.78 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
..|+..++..+-++..|++.++.
T Consensus 164 ~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 164 LALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 325
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=65.06 E-value=1.4e+02 Score=30.02 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+++..+.+|...+..++.++..+
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333
No 326
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=64.89 E-value=41 Score=30.72 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT--------------QENAKLQSALQEMQLQFKESKEK 582 (1122)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~--------------~e~~~L~~~l~~le~~l~~~~~~ 582 (1122)
......||..|.+|+.+|+.|...+..++.+.. ....+|-.++.-+|.++..++..
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999988887654 12345555555555555554443
No 327
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.85 E-value=3.2e+02 Score=33.07 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l 653 (1122)
.+.+..++.+....+.++.......+++-.-+++++.++.+--.++
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkki 465 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKI 465 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 3455566666665555555555444444444444444444333333
No 328
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.64 E-value=50 Score=34.80 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEK 630 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~ 630 (1122)
+..+..++++.++++++
T Consensus 123 li~~l~~~~~~~~~~~k 139 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKK 139 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 329
>PRK00295 hypothetical protein; Provisional
Probab=64.21 E-value=50 Score=28.56 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~ 682 (1122)
.++++..|+.++..|.+.+.
T Consensus 31 Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 31 QQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 330
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=64.04 E-value=63 Score=30.58 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
...++.+...++++++.+.+.+.-.+.....++...+.++.++...-.. -.+...++..++.+++..++.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666665555544433322222 334556666677777666653
No 331
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=63.73 E-value=1.1e+02 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
............-+..|.+|..||+.+|.
T Consensus 68 ~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 68 QQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 33444555566667788888889998887
No 332
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=63.64 E-value=20 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001214 657 ESKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~ 676 (1122)
..++..++.++..+++.+..
T Consensus 45 r~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 45 REKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444433
No 333
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.47 E-value=1.5e+02 Score=28.79 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001214 614 LTSENEKLK 622 (1122)
Q Consensus 614 L~~e~~kLe 622 (1122)
+++.++.++
T Consensus 76 l~~r~E~ie 84 (121)
T PRK09343 76 LKERKELLE 84 (121)
T ss_pred HHHHHHHHH
Confidence 333333333
No 334
>PLN03188 kinesin-12 family protein; Provisional
Probab=63.41 E-value=5.1e+02 Score=34.95 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=21.4
Q ss_pred HHHHhHHHHhhhhhhHhH---hhhcCC----ccccccccCcHHHHHHhhc
Q 001214 95 EKLQQHFNQHVFKMEQEE---YSKEAI----NWSYIEFVDNQDILDLIEK 137 (1122)
Q Consensus 95 EkLq~~f~~~~f~~eq~e---y~~E~i----~~~~i~~~dn~~~idlie~ 137 (1122)
.=|-..+.+.+|..-.+. ....++ ..++++.+ |..+.||+..
T Consensus 200 ~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIY-NEkI~DLLsp 248 (1320)
T PLN03188 200 QGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIY-NEQITDLLDP 248 (1320)
T ss_pred CCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeee-cCcceecccc
Confidence 344555666777542221 111122 23455555 6668999864
No 335
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=63.15 E-value=2.6e+02 Score=32.91 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 662 QLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..+.++..++.++.--+..++.|+..+
T Consensus 243 ~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 243 EHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555566666544
No 336
>PTZ00121 MAEBL; Provisional
Probab=62.98 E-value=5.4e+02 Score=35.12 Aligned_cols=13 Identities=8% Similarity=0.411 Sum_probs=5.0
Q ss_pred eEEEeeccceEEe
Q 001214 184 FTICHYAGDVTYQ 196 (1122)
Q Consensus 184 F~i~H~ag~V~Y~ 196 (1122)
|+..-.+|..-|+
T Consensus 777 fG~~GlGGRLGsn 789 (2084)
T PTZ00121 777 YGLYGFGGRLGAN 789 (2084)
T ss_pred eeeeccCcccccc
Confidence 3333334443333
No 337
>PRK04325 hypothetical protein; Provisional
Probab=62.65 E-value=49 Score=29.13 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 623 TLVSSLEKKIDETEKKFE 640 (1122)
Q Consensus 623 ~~l~~l~~~l~ele~~~~ 640 (1122)
+.+.+|+.++.-.|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe 26 (74)
T PRK04325 9 DRITELEIQLAFQEDLID 26 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 338
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=62.62 E-value=2.9e+02 Score=31.79 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001214 524 GALQAAKNKLEKQVEELTWRLQLE----------------------KRMRVDMEEAKTQENAKLQSAL-QEMQLQFKESK 580 (1122)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~e----------------------~~~~~~le~~~~~e~~~L~~~l-~~le~~l~~~~ 580 (1122)
+.|.+....|+.+++-+...++.- ++--++||+...+.+++|+..- .+|+.-.++..
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 581 EKLMKEIEVAKKEAEKV-PVVQEVPVIDHAVVEELTSENEKLK----TLVSSLEKKIDETEKKFEETSKISEERLKQALE 655 (1122)
Q Consensus 581 ~~l~~e~~~~~~~~ee~-~~~~e~~~~~~~~~~~L~~e~~kLe----~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~ 655 (1122)
..+.++-.+-...++-+ ..-.|....+.++...++...+.|. ++++.++.+++-+-++....=-+...+++.++.
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa 453 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA 453 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
.+..+++-+.+..+|....++|...+...
T Consensus 454 erqaLRqCQrEnQELnaHNQELnnRLaaE 482 (593)
T KOG4807|consen 454 ERQALRQCQRENQELNAHNQELNNRLAAE 482 (593)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHH
No 339
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.59 E-value=48 Score=29.03 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 622 KTLVSSLEKKIDETEKKF 639 (1122)
Q Consensus 622 e~~l~~l~~~l~ele~~~ 639 (1122)
++.+.+|+.++.-.++.+
T Consensus 7 e~Ri~~LE~~lafQe~tI 24 (72)
T PRK02793 7 EARLAELESRLAFQEITI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 340
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.49 E-value=1.1e+02 Score=26.94 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1122)
+.+..|..|-.+|...-..+...+..+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr 39 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLR 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444443333333333333
No 341
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=62.31 E-value=8.6 Score=35.87 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKI-DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l-~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
......++..+..++.++++|-..| ++..+-.+...++.. .++.+...+++++.+.+..+..++.++..|+.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~-------~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERA-------ALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777666 333333333332222 33444455666666666666666666666665
No 342
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.24 E-value=1.4e+02 Score=29.33 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
.+.+..+.+...+++..+..+..|+..+
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 343
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.01 E-value=2.4e+02 Score=31.37 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.7
Q ss_pred hCCCCccChHHHH
Q 001214 304 AGYPTRKPFDEFV 316 (1122)
Q Consensus 304 ~g~p~r~~~~~F~ 316 (1122)
-|||--++...|.
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 5999988888875
No 344
>PRK00736 hypothetical protein; Provisional
Probab=61.87 E-value=50 Score=28.56 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 624 LVSSLEKKIDETEKKF 639 (1122)
Q Consensus 624 ~l~~l~~~l~ele~~~ 639 (1122)
.+.+|+.++.-.+..+
T Consensus 6 Ri~~LE~klafqe~ti 21 (68)
T PRK00736 6 RLTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 345
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=61.71 E-value=1.8e+02 Score=34.20 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+..+|.+++.+++++-.++...+.+++....++.++-...-........++-+.++++..++.+.
T Consensus 191 eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 191 EEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 33334444444443333333333333333333222222222223333333334444444444433
No 346
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.65 E-value=33 Score=40.86 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.+.+..++|++++.++.+.+.+..+..+ ++.+++++++++..|+.+++.+..
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~d-------le~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGD-------DQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333444555555555554433333333333 333444444444444444444333
No 347
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.62 E-value=2.6e+02 Score=35.15 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++.|...+..|++...+.-..++.++.
T Consensus 227 tl~~L~~~v~~l~~~k~qr~~kl~~l~~ 254 (660)
T KOG4302|consen 227 TLDRLDKMVKKLKEEKKQRLQKLQDLRT 254 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444444
No 348
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=61.41 E-value=2.1e+02 Score=29.88 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001214 667 MHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 667 ~~~le~~i~~Le~e~~~l~q 686 (1122)
....++.|..|+.||+.||.
T Consensus 155 ~~~~qe~i~qL~~EN~~LRe 174 (181)
T PF05769_consen 155 SQEEQEIIAQLETENKGLRE 174 (181)
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 34566777888888888876
No 349
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.25 E-value=1.3e+02 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
.+++...+.++..|+..+..|.+-..+||....
T Consensus 65 l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 65 LQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666667777777777666666666543
No 350
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.16 E-value=2.2e+02 Score=29.98 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 520 ARETGALQAAKNKLEKQVEELTWRLQL 546 (1122)
Q Consensus 520 a~~~~~L~~~~~~LE~kv~el~~~l~~ 546 (1122)
..++..|......|+.++.+++.+.+.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655553
No 351
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.06 E-value=4.2e+02 Score=33.15 Aligned_cols=6 Identities=50% Similarity=0.772 Sum_probs=3.7
Q ss_pred CCCchH
Q 001214 769 GKPVAA 774 (1122)
Q Consensus 769 ~~p~~A 774 (1122)
|.|+++
T Consensus 464 Gv~s~~ 469 (582)
T PF09731_consen 464 GVPSEA 469 (582)
T ss_pred CCCCHH
Confidence 666554
No 352
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.04 E-value=1.1e+02 Score=28.43 Aligned_cols=79 Identities=29% Similarity=0.321 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 607 DHAVVEELTSENEKLKTLVSSLEKKIDETE---------KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele---------~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
.....+.+..+..+|...++.|+..+..+. +.+..++...+....++.. .+...+..++..++.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777776654221 1222222222222222221 22345677778888888888
Q ss_pred HHHHHHHHHh
Q 001214 678 ETENQILRQQ 687 (1122)
Q Consensus 678 e~e~~~l~q~ 687 (1122)
++++..|+++
T Consensus 88 ~~en~~L~~~ 97 (100)
T PF01486_consen 88 EEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 353
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=61.02 E-value=3.1e+02 Score=32.76 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKI 632 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l 632 (1122)
..+.....+.+|+.++-+++.++
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL 302 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEY 302 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 354
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=60.94 E-value=2.9e+02 Score=33.71 Aligned_cols=144 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccccchhhHH
Q 001214 533 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES---KEKLMKEIEVAKKEAEKVPVVQEVPVIDHA 609 (1122)
Q Consensus 533 LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~---~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~ 609 (1122)
+|...+++.++++ .+...+..+...++.+...+..+ +.-...+.-..+...+....+.+....-+.
T Consensus 339 ~e~~~e~~~r~~e-----------~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~ 407 (607)
T KOG0240|consen 339 LELTAEEWKRKLE-----------KKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITK 407 (607)
T ss_pred hHhhHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
....++.+...+++++..|...+++...+.....+...++..++.+-++....-.+.....+.+..+++++++.-++.
T Consensus 408 ~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e 485 (607)
T KOG0240|consen 408 LKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE 485 (607)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 355
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=60.89 E-value=2.7e+02 Score=30.90 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i 674 (1122)
..+..........+.+++..+.+......+.+.........+.+.+.+...+++......+.|
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555444444444444444444444444443333
No 356
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.88 E-value=3.3e+02 Score=31.88 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.6
Q ss_pred hHHHhHHHHHH
Q 001214 817 YWLSNTSTLLF 827 (1122)
Q Consensus 817 fWLsN~~~Ll~ 827 (1122)
.|=-+..++++
T Consensus 245 ~Wnvd~~r~~~ 255 (459)
T KOG0288|consen 245 LWNVDSLRLRH 255 (459)
T ss_pred eeeccchhhhh
Confidence 34444444444
No 357
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.70 E-value=2.4e+02 Score=30.28 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEK 582 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~ 582 (1122)
..++.++.+.+....++..+
T Consensus 54 ~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554443
No 358
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.51 E-value=84 Score=33.02 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.....-+..++.++..|+.-+...++|++.|+|
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556677778888888888888888887764
No 359
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.44 E-value=94 Score=26.29 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+++..+..|+.+...|...+..|+.++..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555554
No 360
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.39 E-value=1.6e+02 Score=29.15 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 562 NAKLQSALQEMQLQFKES 579 (1122)
Q Consensus 562 ~~~L~~~l~~le~~l~~~ 579 (1122)
...|....+.++.+++.+
T Consensus 8 l~~l~~~~~~l~~~~~~l 25 (140)
T PRK03947 8 LEELAAQLQALQAQIEAL 25 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 361
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=60.28 E-value=2.2e+02 Score=29.78 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
...+.+...|+.+....+.++..|+..+..|+.+.
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666666544
No 362
>smart00338 BRLZ basic region leucin zipper.
Probab=60.15 E-value=95 Score=26.32 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
...+.+++.++..|+.+..+|..++..|+.++..++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777778888888888888888888877764
No 363
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=59.47 E-value=1.2e+02 Score=34.77 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAM-HRLEEKVSDMETENQILR 685 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~-~~le~~i~~Le~e~~~l~ 685 (1122)
+.++|+++-..|++......++++++.+.............+++.++.+.+..++... .+-.+.++++++++...+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444444444444444444444443211 122344455555544443
No 364
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.42 E-value=81 Score=29.86 Aligned_cols=28 Identities=7% Similarity=0.316 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+++..+.++..+++.+++++..+....+
T Consensus 69 ~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 69 DLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333
No 365
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.32 E-value=6e+02 Score=34.39 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=15.1
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHH
Q 001214 22 TITKWLDPEAAAVSRDALAKIVYSR 46 (1122)
Q Consensus 22 ~~~~~l~~~~a~~~rdalak~lY~~ 46 (1122)
++...-|-.+=...-|+++-+||+.
T Consensus 33 ~~I~G~tGaGKStildai~~aLyg~ 57 (1047)
T PRK10246 33 FAITGPTGAGKTTLLDAICLALYHE 57 (1047)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444455555566677777777764
No 366
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=59.30 E-value=5.6e+02 Score=34.05 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHhhc
Q 001214 1084 SVSPNVISSMRILMTE 1099 (1122)
Q Consensus 1084 ~v~~~~i~~l~~~~~~ 1099 (1122)
.++++-+..+...+.+
T Consensus 853 ~LD~e~l~~l~~~l~~ 868 (908)
T COG0419 853 TLDEERLEKLAEILEE 868 (908)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4777777666666654
No 367
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.21 E-value=68 Score=32.70 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1122)
.++.+...+..|+..+....+.+..+++.+.+.+....
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777666666666665554444333
No 368
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.65 E-value=68 Score=27.87 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001214 662 QLKTAMHRLEEKV 674 (1122)
Q Consensus 662 ~l~~~~~~le~~i 674 (1122)
+++.++.-|-+++
T Consensus 40 k~q~qlr~L~~kl 52 (72)
T COG2900 40 KLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 369
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.42 E-value=6.8 Score=49.15 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=23.5
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhhhH
Q 001214 419 SMRREASCLRIQRDLRMYLAKKAYKDMCFS 448 (1122)
Q Consensus 419 ~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a 448 (1122)
..+++++|++||+.||||++|++...+-++
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999887766543
No 370
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.19 E-value=81 Score=37.61 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
+++.+.++++.|+++.+.|+++......++...-.. .-.+++++..+++.+...++..+..|+..++.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~------~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQS------ETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555444444444322111 11223334444555555555555555555543
No 371
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=57.97 E-value=3.1e+02 Score=30.70 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
+..+..|..-|+.+++.|+.++.
T Consensus 110 VKqWLEERR~lQgEmQ~LrDKLA 132 (351)
T PF07058_consen 110 VKQWLEERRFLQGEMQQLRDKLA 132 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655544
No 372
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=57.19 E-value=11 Score=46.18 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhHHHH
Q 001214 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVC 451 (1122)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~~~ 451 (1122)
..|.+||+.||.|.+||.|.++|.-+..
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888887765443
No 373
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.02 E-value=1.5e+02 Score=29.31 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
+.+..++..+..+++++..+...+..
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 108 KALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 374
>PRK00846 hypothetical protein; Provisional
Probab=56.62 E-value=1e+02 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+..+..|...+...+..|..|+..+..+..
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 375
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.52 E-value=2.6e+02 Score=33.94 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=12.5
Q ss_pred hCCCCccChHHHHHHHhhhhh
Q 001214 304 AGYPTRKPFDEFVDRFGILAS 324 (1122)
Q Consensus 304 ~g~p~r~~~~~F~~ry~~l~~ 324 (1122)
.--|..+||.+=+.-=++|..
T Consensus 279 ~p~~~svpy~~a~~n~ril~s 299 (518)
T PF10212_consen 279 KPCPESVPYEEALANRRILLS 299 (518)
T ss_pred CCCCccCChHHHHhhhHHHhh
Confidence 334667777776655555554
No 376
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=55.22 E-value=4.4e+02 Score=31.56 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HH
Q 001214 494 KKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQEN---------AK 564 (1122)
Q Consensus 494 ~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~---------~~ 564 (1122)
..+..........++....-.+.........-+.....+++.++.+.+.++. .-+++. ..
T Consensus 144 ~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~-----------~fr~~~~i~~~~~~~~~ 212 (444)
T TIGR03017 144 RFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLS-----------AYQQEKGIVSSDERLDV 212 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHcCCcccCcccch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 001214 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID-------ETEK 637 (1122)
Q Consensus 565 L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~-------ele~ 637 (1122)
...++.++..++...+.+................. ........+..+..+...++.++.++..... +++.
T Consensus 213 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~ 289 (444)
T TIGR03017 213 ERARLNELSAQLVAAQAQVMDASSKEGGSSGKDAL---PEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQA 289 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc---hhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 638 KFEETSKISEERLKQA-LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 638 ~~~e~~~~~~~~~~~l-~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
++++++....+...++ .........+.....+++..+.+++.+...+-.+
T Consensus 290 ~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 340 (444)
T TIGR03017 290 EINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 377
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.90 E-value=2.2e+02 Score=37.09 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=8.0
Q ss_pred cccc-ceeeeccccccc
Q 001214 350 QIGK-TKVFLRAGQMAD 365 (1122)
Q Consensus 350 ~iG~-tkVFlr~~~~~~ 365 (1122)
.+|- .+||.+-|.-..
T Consensus 367 ~i~~~~~i~~~ig~~~s 383 (782)
T PRK00409 367 EIPVFKEIFADIGDEQS 383 (782)
T ss_pred cccccceEEEecCCccc
Confidence 4554 456665554333
No 378
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.50 E-value=1.3e+02 Score=30.95 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
..-...|+++++....+...+.+.+...+...+ ..++...++..++..++..++.++.++...+
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e-------~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGRE-------ETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444433333333 3333333444444444444444555554443
No 379
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=54.21 E-value=1.2e+02 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
+..++.|.+|+=.|+=.+--|++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34456666666666666655555554
No 380
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=53.28 E-value=20 Score=29.52 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
++++-|.+++.+|++++..|+.||..|++.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788899999999999999999999843
No 381
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=53.24 E-value=2.1e+02 Score=30.61 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 527 QAAKNKLEKQVEELT 541 (1122)
Q Consensus 527 ~~~~~~LE~kv~el~ 541 (1122)
++...++|-.+.+|+
T Consensus 89 KaRm~eme~~i~dL~ 103 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLT 103 (292)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555554
No 382
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.09 E-value=1.4e+02 Score=25.22 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 644 ~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
....++...+..++.....|..++..|+..+..|..+++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334445555556666666666677777777777766653
No 383
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.70 E-value=5e+02 Score=31.47 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKID----ETEKKFEETSKISEERLKQALEAESKI----VQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~----ele~~~~e~~~~~~~~~~~l~~~~~~~----~~l~~~~~~le~~i~~Le~ 679 (1122)
++.+..+...+..|..++..+..++. .+..++.++..+......+ ...++ ...+..+.++++++..|-.
T Consensus 350 e~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~---~lekl~~~q~e~~~~l~~v~eKVd~Lpq 426 (531)
T PF15450_consen 350 EDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERK---SLEKLDQWQNEMEKHLKEVQEKVDSLPQ 426 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455666666666666666666554 2333343433322221111 11122 2233444455555555555
Q ss_pred HHHHHHHh
Q 001214 680 ENQILRQQ 687 (1122)
Q Consensus 680 e~~~l~q~ 687 (1122)
+++.+-.+
T Consensus 427 qI~~vs~K 434 (531)
T PF15450_consen 427 QIEEVSDK 434 (531)
T ss_pred HHHHHHHH
Confidence 55555443
No 384
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.69 E-value=68 Score=28.71 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+++..++..+..|-..+...+++..+|+.||+.|++
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555566666666555
No 385
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.20 E-value=3.4e+02 Score=29.43 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 001214 526 LQAAKNKLEKQVEE 539 (1122)
Q Consensus 526 L~~~~~~LE~kv~e 539 (1122)
+......++.++.+
T Consensus 50 ~~a~~k~~e~~~~~ 63 (225)
T COG1842 50 AIARQKQLERKLEE 63 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 386
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=51.89 E-value=2.9e+02 Score=35.52 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001214 893 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 972 (1122)
Q Consensus 893 q~l~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 972 (1122)
+.+...+...-...++.+-..+..+|. -|.+....|..... . ....++.....++.+|+.++..++.+==
T Consensus 530 ~~le~~v~~gL~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~~~--~-~~~~~T~ac~~vv~~L~~~~~~~~~~l~----- 599 (710)
T PF07393_consen 530 SRLEEKVNAGLNKGIDVLMNWVEFILS--EQKKTDFKPKEDDL--S-LDQQPTPACQEVVEFLERHCSLLKGSLD----- 599 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCcccc--c-cccCCCHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 344444444444455555555555554 34333333311100 0 1134566789999999999999886422
Q ss_pred HHHHHHHHHhHHHHHhHhhhc--cCCCCCccchhHHhhchHHHHHHHhhcccccccccHHHhHHHHHHHhHhhhcccccC
Q 001214 973 QKIFTQTFSYINVQLFNSLLL--RRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRI 1050 (1122)
Q Consensus 973 ~Q~f~qlf~~ina~lfN~Ll~--r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~ 1050 (1122)
.........=|+..+|+.|+. .+--.|..=|+++..=|....+++.+-+ .......++-|.+.++|+.++ ..
T Consensus 600 ~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~---~~~v~~~F~~L~~l~nl~~v~---~~ 673 (710)
T PF07393_consen 600 GSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWG---IPSVDEKFEALKELGNLFIVD---PE 673 (710)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhheeec---HH
Confidence 233444445566666766665 3666777999999999999999999866 345678899999999999994 34
Q ss_pred CHHHHHhccC-cCCCHHHHHHHHhc
Q 001214 1051 SYDEITNDLC-PILSVQQLYRICTL 1074 (1122)
Q Consensus 1051 ~~~~i~~~~c-~~Ls~~Qi~~il~~ 1074 (1122)
++.+++.+.+ ..+++..|+..+..
T Consensus 674 ~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 674 NLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHhhccccCCCHHHHHHHHHH
Confidence 4545554443 34666666666543
No 387
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.87 E-value=1.4e+02 Score=36.93 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1122)
+.+..|++++..++.++..++.++..++.+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444433
No 388
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=51.54 E-value=1.7e+02 Score=25.60 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 639 FEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 639 ~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
..+.+....++.............|...+..|..++..|.+.++.|
T Consensus 23 ~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 23 QQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444555555555555555555554443
No 389
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.38 E-value=1.4e+02 Score=34.13 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=16.6
Q ss_pred HHHHHHHhHHHHHhHhhhccCCCCCc
Q 001214 975 IFTQTFSYINVQLFNSLLLRRECCTF 1000 (1122)
Q Consensus 975 ~f~qlf~~ina~lfN~Ll~r~~~cs~ 1000 (1122)
++.|.|-+-|+.++-.+-...+|.-|
T Consensus 270 f~~~~~q~yn~~~l~~~~~~~~~~ew 295 (330)
T PF07851_consen 270 FFGQFFQLYNAYTLFELSYHPECREW 295 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchHH
Confidence 46777777788877776554443334
No 390
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=51.30 E-value=2.5e+02 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q 001214 663 LKTAMHRLEEKVSD 676 (1122)
Q Consensus 663 l~~~~~~le~~i~~ 676 (1122)
|++++.+.+..|.+
T Consensus 105 L~k~I~~~e~iI~~ 118 (126)
T PF09403_consen 105 LDKEIAEQEQIIDN 118 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443333333
No 391
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.03 E-value=4.7e+02 Score=30.68 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 533 LEKQVEELTWRLQLE 547 (1122)
Q Consensus 533 LE~kv~el~~~l~~e 547 (1122)
.|..+.+++.+|+.+
T Consensus 257 aEqsl~dlQk~Leka 271 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKA 271 (575)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666644
No 392
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.68 E-value=1.6e+02 Score=25.25 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEK 673 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~ 673 (1122)
..+..-+.|.+++.....+
T Consensus 32 ~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 32 TWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 393
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=50.46 E-value=3.4e+02 Score=28.85 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.1
Q ss_pred HHHHhHHHHHH
Q 001214 672 EKVSDMETENQ 682 (1122)
Q Consensus 672 ~~i~~Le~e~~ 682 (1122)
..+...+.++.
T Consensus 120 ~~l~~~~~e~~ 130 (201)
T PF12072_consen 120 EELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 394
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.37 E-value=1.9e+02 Score=31.86 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKI 632 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l 632 (1122)
.+.-+.++.++.++.+.+|++++
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~el 102 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEEL 102 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655555554443
No 395
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.89 E-value=3.2e+02 Score=35.49 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=5.0
Q ss_pred eccchhhhcch
Q 001214 196 QTELFLDKNKD 206 (1122)
Q Consensus 196 ~~~~fl~kN~d 206 (1122)
....+++-|..
T Consensus 220 ep~~~~~ln~~ 230 (771)
T TIGR01069 220 EPQAIVKLNNK 230 (771)
T ss_pred EcHHHHHHHHH
Confidence 33345555543
No 396
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.85 E-value=4.9e+02 Score=31.70 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..|..+++.++..+.+++.+++.|.+
T Consensus 518 ~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 518 IDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred HHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 56777777777778888888888876
No 397
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.27 E-value=1.1e+02 Score=34.81 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCCCeeeeec
Q 001214 250 QQLQQLLETLSSSEPHYIRCV 270 (1122)
Q Consensus 250 ~sl~~Lm~~l~~t~~hfirCi 270 (1122)
.-+..||..+....|-|-+-+
T Consensus 126 ~Liq~l~a~f~~~pP~ys~~~ 146 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPPVYSRSL 146 (365)
T ss_pred HHHHHHHHHhcCCCccccCCC
Confidence 334555555566666555443
No 398
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=49.10 E-value=1.8e+02 Score=29.99 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=3.5
Q ss_pred cHHHHHHhh
Q 001214 752 NVDALINCV 760 (1122)
Q Consensus 752 ~~~~l~~~i 760 (1122)
+...|+..+
T Consensus 170 nI~il~dy~ 178 (203)
T KOG3433|consen 170 NIFILIDYL 178 (203)
T ss_pred hHHHHHHHH
Confidence 333344444
No 399
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=49.08 E-value=2.9e+02 Score=27.75 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~ 646 (1122)
.+.++.|.+.+++|+..+..++..+.++..+...+....
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555544444444333
No 400
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=49.06 E-value=61 Score=29.59 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+...+-.++.-++.+|..|+..+..|..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666655543
No 401
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=49.01 E-value=5.1e+02 Score=30.48 Aligned_cols=35 Identities=31% Similarity=0.578 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELT 541 (1122)
Q Consensus 503 ~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~ 541 (1122)
.|++.+.+ .+.+.+.+...|...+..||..+..+.
T Consensus 84 ~Wk~el~~----ele~l~~E~~~L~~~k~rle~~L~~~~ 118 (421)
T KOG2685|consen 84 FWKGELDR----ELEDLAAEIDDLLHEKRRLERALNALA 118 (421)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555443 355556677777777777777766664
No 402
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.97 E-value=1.7e+02 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK 651 (1122)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~ 651 (1122)
.+...|...+..+++++.++.+....++.++.++..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544444433
No 403
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=48.88 E-value=1.7e+02 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+..++.++.+|.++-.-|+.|+...+-
T Consensus 59 NavrdYqrq~~elneEkrtLeRELARaKV 87 (351)
T PF07058_consen 59 NAVRDYQRQVQELNEEKRTLERELARAKV 87 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34467888888888888888888876654
No 404
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.74 E-value=91 Score=37.64 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+..+......+.++++++++++..|+++++..
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455556666666666666666666655
No 405
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.58 E-value=2.5e+02 Score=30.00 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
..+--...+.-+.+.+.|.+.+.+.+.+..+..+.+.+........+..+...+.+++.+...++.+++|....+
T Consensus 46 ~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~k 120 (246)
T KOG4657|consen 46 LVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSK 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 406
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.20 E-value=6.2e+02 Score=32.95 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.4
Q ss_pred eccchhhhcc
Q 001214 196 QTELFLDKNK 205 (1122)
Q Consensus 196 ~~~~fl~kN~ 205 (1122)
.....++-|.
T Consensus 225 ep~~~~~ln~ 234 (782)
T PRK00409 225 EPQSVVELNN 234 (782)
T ss_pred EcHHHHHHHH
Confidence 3333444444
No 407
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.98 E-value=1.4e+02 Score=35.87 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.++++++.++++++..++.|...-|++
T Consensus 353 ~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555544443
No 408
>PHA02414 hypothetical protein
Probab=47.86 E-value=1.7e+02 Score=26.78 Aligned_cols=48 Identities=27% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+++...+++..-...+-+.+.--.++...+--++.+|++.|..|.+-+
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n 80 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESN 80 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444433333333334444555555566666555555444
No 409
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=47.61 E-value=2e+02 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKF 639 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1122)
+..+++|+.+.=+|+-++--+++.+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3334444444444444443444433
No 410
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.60 E-value=1.6e+02 Score=36.37 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
++.++......++.+++++++++.+++.++..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444445556666666666666666665553
No 411
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.43 E-value=2.3e+02 Score=25.98 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 638 KFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1122)
Q Consensus 638 ~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~ 668 (1122)
+++.+......+.+++...+.....|+.-..
T Consensus 40 ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~ 70 (89)
T PF13747_consen 40 EIQRLDADRSRLAQELDQAEARANRLEEANR 70 (89)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333344444444433333333333
No 412
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.28 E-value=17 Score=44.64 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHH
Q 001214 378 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYL 437 (1122)
Q Consensus 378 a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~ 437 (1122)
+..+++.-+..-.|.--++.-+|++.||++||||++|+ ++++.||.-|+...
T Consensus 10 a~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rk--------k~~~~I~~e~d~~f 61 (1096)
T KOG4427|consen 10 AAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRK--------KAQIEIQEEFDNLF 61 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
No 413
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=47.13 E-value=1.8e+02 Score=30.33 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
+-++.++++++-..+..|+..+..+.+..
T Consensus 120 ll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 120 LLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34577888888888888888888876543
No 414
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.95 E-value=2.3e+02 Score=26.35 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKV 674 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i 674 (1122)
.++..+..|..=.++|+.++
T Consensus 77 ~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 77 ELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444433
No 415
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=46.93 E-value=96 Score=37.14 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
-+.+-.+..+..++..++++|+.+..++-+++....+... ..+++.++...+.++++++++++..+++++..+-
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777766666666654222111 1223333444555556666666655555555433
No 416
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=46.91 E-value=3.9e+02 Score=28.57 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
...+..+-.+...|+.....|+.....|++
T Consensus 169 ~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 169 RKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555443
No 417
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=46.81 E-value=2e+02 Score=33.35 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1122)
+..|..++++|+.+...+.+++++.-.
T Consensus 146 ~~~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 146 NEHLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444333
No 418
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.72 E-value=2.3e+02 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~ 645 (1122)
+..++.|....++|.++++..+.....++....++...
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~r 75 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRR 75 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666555555544444433
No 419
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=46.61 E-value=3.8e+02 Score=28.36 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~~ 690 (1122)
..+.-++.++.+++..++.|..+|.+...-+..|++....
T Consensus 129 eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~ 168 (205)
T PF12240_consen 129 EELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRK 168 (205)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444567777888888899999999989999999986543
No 420
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.39 E-value=3.7e+02 Score=28.15 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1122)
.+..|..++.++..+...+..++..-+
T Consensus 96 ~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 96 ANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544433
No 421
>PLN02678 seryl-tRNA synthetase
Probab=45.92 E-value=1e+02 Score=36.98 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+++-.+..+..++..++++|+.+...+-+++..+.... ....++.++...+.++++.+++++..+++++..+-.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667777777666666665554422111 112233444555666666666666666666665443
No 422
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=45.51 E-value=4.4e+02 Score=28.75 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l 632 (1122)
......|..+...++.++..++..+
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444443
No 423
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.49 E-value=94 Score=25.67 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ 633 (1122)
++.+..+++..+..++.+++
T Consensus 5 lEn~~~~~~~~i~tvk~en~ 24 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENE 24 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333333333
No 424
>PRK12704 phosphodiesterase; Provisional
Probab=45.43 E-value=6.8e+02 Score=30.89 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.1
Q ss_pred HHHHHHhH
Q 001214 1034 HIRQAVGF 1041 (1122)
Q Consensus 1034 ~l~Qa~~l 1041 (1122)
.|+++++.
T Consensus 418 ~IV~~ADa 425 (520)
T PRK12704 418 VLVAAADA 425 (520)
T ss_pred HHHHHHHH
Confidence 33333333
No 425
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.38 E-value=1.4e+02 Score=35.92 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~ 681 (1122)
.|+.+++..+-+.+++.+.+
T Consensus 132 ~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 132 ALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHhHHHHHHHHHHHHHhhc
Confidence 34444444444444443333
No 426
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=45.18 E-value=2.4e+02 Score=35.08 Aligned_cols=184 Identities=9% Similarity=0.173 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 001214 894 QLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQ 973 (1122)
Q Consensus 894 ~l~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~ 973 (1122)
.+..+.......+++.+-..+.|.+..... +..- . ...++.|+..+..++.-++. +++|.+..
T Consensus 361 ~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft-~~W~-----------~----~~~~~~I~~Ti~dY~~d~~~-~l~~~~~~ 423 (566)
T PF06046_consen 361 GFDDLAKECCQYLLEEIFNDLKPHFKKLFT-KKWY-----------S----GEAVDTICATIEDYLQDFQH-YLRPPYFQ 423 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTHHHHCTTTS-GGGC-----------T----S-HHHHHHHHHHHHHHHHCC-CS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhCc-CcCc-----------C----cchHHHHHHHHHHHHHHHHH-hccccHHH
Confidence 344445555666666666667777654321 1111 0 14789999999999876664 68999999
Q ss_pred HHHHHHHHhHHHHHhHhhhccCCCC-----CccchhHHhhchHHHHHHHhhcccccccccHHHhHHHHHHHhHhhhcccc
Q 001214 974 KIFTQTFSYINVQLFNSLLLRRECC-----TFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKY 1048 (1122)
Q Consensus 974 Q~f~qlf~~ina~lfN~Ll~r~~~c-----s~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~ 1048 (1122)
.++..+...+=..=+..|+.++--| .-.-+-+|+-....|.+-+...+ ........+..|..++.+|-+..++
T Consensus 424 ~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~--~~~~~~~~~~~l~~l~~ll~~~d~~ 501 (566)
T PF06046_consen 424 ELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG--SKSEVKSSFDVLEDLLELLRLEDPE 501 (566)
T ss_dssp HHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHH-HS-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHhcCCHH
Confidence 9999999888888888888876555 45567899999999999998755 2333445667777777777443222
Q ss_pred cCCHH-HHHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhhc
Q 001214 1049 RISYD-EITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTE 1099 (1122)
Q Consensus 1049 ~~~~~-~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l~~~~~~ 1099 (1122)
...++ ..+...+|-++...|..||..= +|.. ..--.+++..+.....+
T Consensus 502 ~i~l~~~~l~~~ypD~~~~~v~alL~~R--~D~~-r~~~~~il~~~~~~~~~ 550 (566)
T PF06046_consen 502 MIKLEVSSLLQKYPDISEEHVEALLALR--GDLS-RSEVKEILEILREIIKS 550 (566)
T ss_dssp CHHHHHHHHHCC-TT--SHHHHHHHCT---TT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhc--cCCC-HHHHHHHHHHHHHHhhc
Confidence 22222 3335788999999999999432 2333 23445555555554443
No 427
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=44.70 E-value=43 Score=37.95 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+...+..++..+.++...+..+...+.........+...+....-.+..++..+..+.-.|..|+..++.++..
T Consensus 81 sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 81 SLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 333444444444444444444444444444444444555555556666677777777777888888888888774
No 428
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.69 E-value=6.3e+02 Score=30.37 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=5.8
Q ss_pred CCccchhHHhhc
Q 001214 998 CTFSNGEYVKAG 1009 (1122)
Q Consensus 998 cs~s~G~qIr~n 1009 (1122)
|....|+++.+-
T Consensus 555 ~~~~~g~~lql~ 566 (613)
T KOG0992|consen 555 CVIMDGVNLQLS 566 (613)
T ss_pred CcccCcchHHHH
Confidence 444555444443
No 429
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.26 E-value=8.2e+02 Score=31.56 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001214 567 SALQEMQLQFKES 579 (1122)
Q Consensus 567 ~~l~~le~~l~~~ 579 (1122)
+++.+++.+++.+
T Consensus 274 ~qL~~l~~~L~~a 286 (726)
T PRK09841 274 RQLPEVRSELDQA 286 (726)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 430
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=43.81 E-value=4.1e+02 Score=27.96 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1122)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~ 672 (1122)
.+...|...+...+..+...+.-......+..+....++.++..+..|.+.+...+.
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544455544444444445555554444444444433
No 431
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=43.75 E-value=37 Score=42.00 Aligned_cols=135 Identities=20% Similarity=0.032 Sum_probs=67.5
Q ss_pred HHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHH-HH
Q 001214 378 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQT-GM 456 (1122)
Q Consensus 378 a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs-~~ 456 (1122)
-..||+.++.|..+..-+.-+-.++.+|+.|+|+.-+.+.....-.+--..||.+|+.-.--.....-...+...|- .-
T Consensus 531 Q~~~~k~~~~f~~~~~~R~~~I~i~~~~a~~~~~~w~~~~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~ 610 (1023)
T KOG0165|consen 531 QSVIQKAVRHFLLRKKQRKFTIGIIKIQALWRGYSWRKKNDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYK 610 (1023)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcccccHHHHHHHHHHHHHhhcccccCcccccceeeecccc
Confidence 45667777777666543333334455555555554433332222122223455555543332221111111111110 00
Q ss_pred HHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHH
Q 001214 457 RGM--AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARREL 513 (1122)
Q Consensus 457 Rg~--~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~ 513 (1122)
|-. ..+..+. .-...++..+|.+.++--+++.++....+...+|+.+|.+..+...
T Consensus 611 R~~~~~e~~~~l-~~~~~~~~~~~~n~~~~~a~sie~~~~~~~~~Lr~~~~~~~i~~~I 668 (1023)
T KOG0165|consen 611 RLSAILEALKHL-EVVTRLSPLCCENMAQSGAISIEKIFVLIRSCLRSIPCMEVIRYAI 668 (1023)
T ss_pred chhhhhhhHHHh-hHHHHhhHHHhhhhhhhchhhHHHHHHHHHhhhccchHHHHHHHHH
Confidence 100 0111111 2234577889999999999888877777777888888877665543
No 432
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=43.51 E-value=65 Score=37.76 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
.+++..+..++..+.+++..+..++.++
T Consensus 147 ~e~Eeris~lEd~~~~i~~~~~~~~k~i 174 (370)
T PF02994_consen 147 DELEERISELEDRIEEIEQAIKELEKRI 174 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333333333333333333
No 433
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=3.1e+02 Score=26.57 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----------------RLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~----------------~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
..+..-+..++.++...+.+++.++....+.+-.-++ +..-.+.++..-..+++++..++.+..
T Consensus 26 srl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e 105 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELE 105 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443321111 000112223333445555555666655
Q ss_pred hHHHHHHHHHH
Q 001214 676 DMETENQILRQ 686 (1122)
Q Consensus 676 ~Le~e~~~l~q 686 (1122)
....++..|+.
T Consensus 106 ~I~~~m~~LK~ 116 (131)
T KOG1760|consen 106 SISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHH
Confidence 55566666654
No 434
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.28 E-value=6.3e+02 Score=29.90 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 539 ELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE 581 (1122)
Q Consensus 539 el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~ 581 (1122)
-+.+.|++|+-+...||+...+-.+-.+.++..|+.++..+++
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3334444443333333333333333334444444444444433
No 435
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.85 E-value=3.2e+02 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+++..+++.++.++..+..++.++..++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 436
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.16 E-value=5.2e+02 Score=28.69 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSL 628 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l 628 (1122)
..+.++.|||..+..+
T Consensus 153 DINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 153 DINIQNKKLESLLQSM 168 (305)
T ss_pred hhhhhHhHHHHHHHHH
Confidence 3445555555554444
No 437
>PHA03011 hypothetical protein; Provisional
Probab=42.15 E-value=1.6e+02 Score=27.04 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 633 DETEKKFEETSKISE 647 (1122)
Q Consensus 633 ~ele~~~~e~~~~~~ 647 (1122)
+++-.+..++..+..
T Consensus 67 deL~~qYN~L~dEYn 81 (120)
T PHA03011 67 DELIAQYNELLDEYN 81 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 438
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.99 E-value=1.2e+02 Score=28.71 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..|+..+.++-++...|+-||+.||.
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 439
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.70 E-value=1.5e+02 Score=29.74 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
++...+.+-.++...+..+|++++ -....++..+...-...++++..+.+|+.+|+.++.++.-+...
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL-------~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQL-------VSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433 33333333332222334667778888888888877776665543
No 440
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=41.67 E-value=7.3e+02 Score=30.22 Aligned_cols=11 Identities=36% Similarity=0.323 Sum_probs=4.5
Q ss_pred hhhhhhhhccc
Q 001214 284 KNVLQQLRCGG 294 (1122)
Q Consensus 284 ~~v~~QLr~~g 294 (1122)
.-...|+|.-|
T Consensus 23 ~~t~~~i~~iG 33 (489)
T PF05262_consen 23 IETAQQIRGIG 33 (489)
T ss_pred hhHHHHHHHHH
Confidence 33444444433
No 441
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.50 E-value=42 Score=34.35 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~ 681 (1122)
.|..++++|++++.+|+.|+
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666
No 442
>PRK00106 hypothetical protein; Provisional
Probab=41.48 E-value=7.7e+02 Score=30.45 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.5
Q ss_pred hHHHHHHHhh
Q 001214 1010 LAELELWCCQ 1019 (1122)
Q Consensus 1010 ls~Le~W~~~ 1019 (1122)
|..||+=+.+
T Consensus 460 l~~lE~ia~~ 469 (535)
T PRK00106 460 LRDLEEIANS 469 (535)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 443
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.15 E-value=3.4e+02 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
-+++.++.++..+.++++++..++
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~ 113 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELA 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 444
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.13 E-value=5.1e+02 Score=28.91 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 567 SALQEMQLQFKESKEKLMKEIEVA 590 (1122)
Q Consensus 567 ~~l~~le~~l~~~~~~l~~e~~~~ 590 (1122)
.++.+-++++.+.+++++...+.+
T Consensus 348 qrvkekE~elke~Ekel~~kf~~l 371 (406)
T KOG3859|consen 348 QRVKEKEAELKEAEKELHEKFDRL 371 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444433
No 445
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.92 E-value=7.4e+02 Score=30.06 Aligned_cols=19 Identities=5% Similarity=0.268 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 618 NEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele 636 (1122)
..-+++.++.+++++++.+
T Consensus 142 l~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 446
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.71 E-value=3.2e+02 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLE 629 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~ 629 (1122)
.|...+..++..+..+.
T Consensus 76 ~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 76 VLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444333333
No 447
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=40.29 E-value=40 Score=33.10 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=52.3
Q ss_pred hhhHHHHHHHhhcCCcccccccccchhhccCCC--CCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCC
Q 001214 207 YVVAEHQALLSASKCSFVSSLFLPLAEESSKTS--KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLL 276 (1122)
Q Consensus 207 ~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~--~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~ 276 (1122)
++++++-+++.-+...-++.||...+.....+. -...-.+-|--++..|+..+.-..|-.++||-||...
T Consensus 64 plSe~~ral~~f~d~~~lr~lfnr~p~~~~~~~V~v~~Gyl~DFV~s~~rL~ke~~~~~p~~~~YIdPr~~~ 135 (145)
T PF03338_consen 64 PLSEEFRALFEFRDMKELRKLFNRIPINVSDGRVQVNKGYLSDFVISLIRLKKELGFDLPEPTTYIDPRDDI 135 (145)
T ss_pred chhHHHHHHhhccccHHHHHHhccCCCCCCCCceEeccccHHHHHHHHHHHHHhcCCCCCCCceeeCCccch
Confidence 567777778777777778888876654222111 1123467899999999999999999999999999875
No 448
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.28 E-value=5.9e+02 Score=28.76 Aligned_cols=124 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001214 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVP 598 (1122)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~ 598 (1122)
+..-.......+..++..+..+...|. .+..++...+.+.+.++.+...+....
T Consensus 174 a~evL~~fl~~~~~~~~~ilq~d~~L~-----------~~ek~~~~~~~k~e~~e~e~~~l~e~~--------------- 227 (297)
T PF02841_consen 174 AEEVLQEFLQSKESMENSILQADQQLT-----------EKEKEIEEEQAKAEAAEKEKEKLEEKQ--------------- 227 (297)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-TTS------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 599 VVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 599 ~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
......+..+...+++.+..|.+++++......+ +.+..-..+..+..+-.....+.+...++.+|..|+
T Consensus 228 ---------~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~-e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 228 ---------KEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQ-EQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 449
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=39.86 E-value=2.7e+02 Score=25.92 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 001214 662 QLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~Le~e~ 681 (1122)
..+.++..|..++.+|+-||
T Consensus 73 ~a~~qi~~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 73 LAREQINELSGKVMELQYEN 92 (96)
T ss_pred HHHHHHHHHhhHHHHHhhcc
Confidence 33344444444444444443
No 450
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.48 E-value=2.1e+02 Score=30.10 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 522 ETGALQAAKNKLEKQVEEL 540 (1122)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el 540 (1122)
+...|+....+||.++...
T Consensus 97 EevrLkrELa~Le~~l~~~ 115 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKV 115 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 451
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.40 E-value=2.8e+02 Score=24.80 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
.+.++.+..|.+.+-.++...+..-++.+.++..-..+.......+-+++..-..+...- +++|..|+.+++.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
No 452
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=39.36 E-value=5.4e+02 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhHHHHHhHhh
Q 001214 945 SSHWQSIIDSLNTLLSTL----KQNFVPPVLVQKIFTQTFSYINVQLFNSL 991 (1122)
Q Consensus 945 ~~~~~~il~~L~~~~~~l----~~~~v~~~l~~Q~f~qlf~~ina~lfN~L 991 (1122)
++=++.+++.+..+...| +.-.+|+.+..-++..+.++++-.+...+
T Consensus 91 s~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~ 141 (234)
T PF10474_consen 91 SSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGY 141 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998888 78899999999999998888876665443
No 453
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=39.10 E-value=1.2e+02 Score=38.53 Aligned_cols=28 Identities=7% Similarity=0.060 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
.++...++.++.++.++-.+|+++++.+
T Consensus 604 ~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 604 LQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 454
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.88 E-value=57 Score=41.49 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhH
Q 001214 466 RFRRQTRASILIQSHCRKYLARLHYMKLKKA 496 (1122)
Q Consensus 466 ~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a 496 (1122)
+..++++.|+.+|++|||+++|+..+..-++
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999998887665443
No 455
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.80 E-value=8.1e+02 Score=29.90 Aligned_cols=175 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHH
Q 001214 488 LHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---QENAK 564 (1122)
Q Consensus 488 ~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~---~e~~~ 564 (1122)
..+..++......+..+... ++....+....++.++..+-.-++-|-..+...+.... ....+
T Consensus 255 ~~~~~L~~~l~~~~~~l~~L--------------eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k 320 (570)
T COG4477 255 SRLERLKEQLVENSELLTQL--------------ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEK 320 (570)
T ss_pred HHHHHHHHHHHHHHhHHHHh--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFKESKEKLM---KEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1122)
Q Consensus 565 L~~~l~~le~~l~~~~~~l~---~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1122)
.+.....|..+.+...+.-. .+....++...++.++.+....-.+..+.-....+.++..++++++.+.+.+++..+
T Consensus 321 ~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~ 400 (570)
T COG4477 321 AKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEK 400 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001214 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 642 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~ 676 (1122)
.......+.+.=..++..+..+.+++....-.+.+
T Consensus 401 ~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek 435 (570)
T COG4477 401 VQEHLTSLRKDELEARENLERLKSKLHEIKRYMEK 435 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.38 E-value=8.8e+02 Score=30.20 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
Q 001214 489 HYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELT----------------WRLQLEKRMRV 552 (1122)
Q Consensus 489 ~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~----------------~~l~~e~~~~~ 552 (1122)
.|..........+..|..+ +...+.++........+......++.++.|++ .+|.-.++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~--~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~ 229 (563)
T TIGR00634 152 TFAGANEKVKAYRELYQAW--LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRE 229 (563)
T ss_pred HhcCchHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHH
Q ss_pred hHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 001214 553 DMEEAKTQENAK----------------------LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAV 610 (1122)
Q Consensus 553 ~le~~~~~e~~~----------------------L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~ 610 (1122)
.+......-... +-..+.++...++.+...+++-...+....+.+..-.+....-++.
T Consensus 230 ~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~R 309 (563)
T TIGR00634 230 LSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEER 309 (563)
T ss_pred HHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
+..+...+.+....++++....+++++++..++.... .++.+++++.++++++..+-.++...+.+...
T Consensus 310 L~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~----~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 310 LAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE----SLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.23 E-value=2.4e+02 Score=24.03 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKI--------------VQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~--------------~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+.+..+..++++...+...+...+.++ ..-...+.+++.++..+++.+..|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 458
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=1e+03 Score=30.87 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHH
Q 001214 436 YLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRK 515 (1122)
Q Consensus 436 ~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~ 515 (1122)
+..|..+.+.+++...+++.+.....| ....+.+-.-.|+-|..++.-..+......-..+-..--..-..+....
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~lE~r----~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~ 628 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEALEGR----FAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQK 628 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 516 LKMAARETGALQAAKNKLEKQVEELTWRLQ----------LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK 585 (1122)
Q Consensus 516 lk~~a~~~~~L~~~~~~LE~kv~el~~~l~----------~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1122)
.++....+..|.+.....+.+++-+..-++ .-.+.+...+.....-...++..+.-.+.....++.+++.
T Consensus 629 ~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~ 708 (984)
T COG4717 629 KAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELEL 708 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 001214 586 EIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID-----------------ETEKKFEETSKISEE 648 (1122)
Q Consensus 586 e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~-----------------ele~~~~e~~~~~~~ 648 (1122)
-..++..+.+....-.+. +--....-.......+..+.++.+.++ --|++...+++..+.
T Consensus 709 ~~kei~dLfd~~~~~~ed---~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~ 785 (984)
T COG4717 709 HRKEILDLFDCGTADTED---AFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDA 785 (984)
T ss_pred HHHHHHHHHhhcccCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHh
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEE--KVSDMETENQILRQQ 687 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~--~i~~Le~e~~~l~q~ 687 (1122)
+..++.+..+.+..+..++..|+. .+..++.+-+.++.+
T Consensus 786 ~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~ 826 (984)
T COG4717 786 LDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKED 826 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
No 459
>PF14282 FlxA: FlxA-like protein
Probab=38.03 E-value=1.9e+02 Score=27.37 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 630 KKIDETEKKFEETSKISEERLK----QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 630 ~~l~ele~~~~e~~~~~~~~~~----~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
..++.|++++..+...+.++.. ..++.+.+...|+.++..|+.+|..++.+......+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 460
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.80 E-value=1.6e+02 Score=28.13 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 640 ~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++=.....+.+.+..+-+++..|+..+.++-++...|+-||+.||.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=37.77 E-value=3.3e+02 Score=25.17 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++..++.+...+...+.....++..++.+...+..++.+..++.-.+....+.+..++..|...+.+-.+-.+.|++
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 462
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=37.71 E-value=68 Score=36.44 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Q 001214 537 VEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTS 616 (1122)
Q Consensus 537 v~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~ 616 (1122)
+..+..||. +.+.-++.|...+..+...+..+...+..-...+.....++..+ ...+..+..
T Consensus 30 Ls~I~eRLs-----------aLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sL-------sstV~~lq~ 91 (326)
T PF04582_consen 30 LSPIRERLS-----------ALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSL-------SSTVTSLQS 91 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
.+..++..+.++...+.+.+..+..+......+...+..++..+....-.+.+|+.++..||
T Consensus 92 Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 92 SLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
No 463
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.71 E-value=4e+02 Score=26.05 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1122)
Q Consensus 503 ~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1122)
.+|-++-|+.+++--=++.=..+-..++.+||++..+|...++ ....|++.+..++..++...+.+.
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~-----------~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE-----------KLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
No 464
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.68 E-value=8.7e+02 Score=29.92 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1122)
Q Consensus 503 ~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1122)
.+....+++........++.-..-......++.+-...+.+++ .++...+......++....+.++...+..+..-++.
T Consensus 13 ~ig~~~ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~E-aeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~ 91 (514)
T TIGR03319 13 IIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLE-AKEEVHKLRAELERELKERRNELQRLERRLLQREET 91 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001214 583 LMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA------ 656 (1122)
Q Consensus 583 l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~------ 656 (1122)
+ +.+...|.+....|++.-.++.....++++...+......+....|+..
T Consensus 92 L------------------------ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 92 L------------------------DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred H------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+.+-.-++.-..+++.+...+=.+.+..
T Consensus 148 eak~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T TIGR03319 148 EAKEILLEEVEEEARHEAAKLIKEIEEE 175 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.27 E-value=8.9e+02 Score=29.97 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----
Q 001214 485 LARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT----- 559 (1122)
Q Consensus 485 ~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~----- 559 (1122)
.....|+..++....+|...|....+.++-+..-++-+...++.- -+..+.+...+|..-++.......+..
T Consensus 161 ~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g---E~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge 237 (557)
T COG0497 161 EAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPG---EDEELEEERKRLSNSEKLAEAIQNALELLSGE 237 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001214 560 ----------QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLE 629 (1122)
Q Consensus 560 ----------~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~ 629 (1122)
......-..+.+....+..+...+.+....+.....++...-+....+...++..+.-...|..-...-.
T Consensus 238 ~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~ 317 (557)
T COG0497 238 DDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYG 317 (557)
T ss_pred CCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 630 KKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 630 ~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..++++-+-.+++..+.. .+.........|+.+++.+..++...=+++...|++.
T Consensus 318 ~~~~~l~~~~~~~~~el~----~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 318 VTIEDLLEYLDKIKEELA----QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred CCHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=37.26 E-value=1.4e+02 Score=33.46 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
...|..|+..|==+++-|+..|++.+..+++..+++.+..+.++-....+.-|+-+..++++.|..-++=++.
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>COG5570 Uncharacterized small protein [Function unknown]
Probab=37.24 E-value=67 Score=25.87 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
.+..+.+++++-..++++.++.+..--.....+..|.+..-.++++|+.|+..
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 468
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.12 E-value=2.6e+02 Score=28.46 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 625 l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
++.+-.....+|..+....+....+...+...+..+..-.+.+.+|+..+..++.++..+..+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 469
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=36.91 E-value=7.9e+02 Score=29.26 Aligned_cols=169 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001214 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVP 598 (1122)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~ 598 (1122)
.....+.-+..=.+.|.+-.-|+..|..+-+....+.+....|...-++-.++|+..+..+-.-...-.+++..+++.-.
T Consensus 275 ~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~ 354 (488)
T PF06548_consen 275 AEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHN 354 (488)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccchh---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 599 VVQEVPVI---------------------------DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK 651 (1122)
Q Consensus 599 ~~~e~~~~---------------------------~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~ 651 (1122)
.+-+.... ...++..|..+..+-...+.+-.+.+...-..-++....-.++.-
T Consensus 355 ~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllv 434 (488)
T PF06548_consen 355 DLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLV 434 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
++.+++......++.-...+.+..++..+++.|+.+
T Consensus 435 rl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 435 RLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.47 E-value=2e+02 Score=29.19 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~ 660 (1122)
......|..++.+|++.++.|++++..++++....+.++..+..-++.+.+-+
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=36.41 E-value=26 Score=40.59 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHH
Q 001214 424 ASCLRIQRDLRMYLAKKAYKD 444 (1122)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~ 444 (1122)
+||+.||+|+|+|.+|...++
T Consensus 18 kaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 472
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=36.39 E-value=1.3e+03 Score=31.57 Aligned_cols=219 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001214 447 FSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGAL 526 (1122)
Q Consensus 447 ~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L 526 (1122)
.+...+++-.+++...........+..-...+...|.--.-......... ..-.+...+..+.....+...+
T Consensus 819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~--------~~~~~~~~l~~~~qle~~~~~l 890 (1294)
T KOG0962|consen 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKE--------EKQKIERSLARLQQLEEDIEEL 890 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh
Q 001214 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI 606 (1122)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~ 606 (1122)
++....+-.++.++..+.. -+..+..+.....++++.+....+...+...+.+......+.........
T Consensus 891 ~e~~~~~~s~~~e~~~~~~-----------~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~ 959 (1294)
T KOG0962|consen 891 SEEITRLDSKVKELLERIQ-----------PLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNEC 959 (1294)
T ss_pred HHHHHHHHHHHHhhHhhhc-----------chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 001214 607 ---------DHAVVEELTSENEKLKTLVSSLEKKID--ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE---- 671 (1122)
Q Consensus 607 ---------~~~~~~~L~~e~~kLe~~l~~l~~~l~--ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le---- 671 (1122)
..+.+..+...+..+...+......+. ....+..+-.-.+..+..++.+++.++..+..++....
T Consensus 960 ~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~ 1039 (1294)
T KOG0962|consen 960 FEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSV 1039 (1294)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred -HHHHhHHHHHHHH
Q 001214 672 -EKVSDMETENQIL 684 (1122)
Q Consensus 672 -~~i~~Le~e~~~l 684 (1122)
++...|+++.+.+
T Consensus 1040 ~ee~~~L~~~~~~l 1053 (1294)
T KOG0962|consen 1040 KEERVKLEEEREKL 1053 (1294)
T ss_pred HHHHHHHHHHHHHh
No 473
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=36.37 E-value=5.2e+02 Score=27.85 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++.....-.+-.-..+..-+.-+++.+++|..+.++..+...+..+-+.++.....|-.+..++..++..+.+++.++++
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Q ss_pred h
Q 001214 687 Q 687 (1122)
Q Consensus 687 ~ 687 (1122)
+
T Consensus 147 ~ 147 (292)
T KOG4005|consen 147 Q 147 (292)
T ss_pred H
No 474
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=2.1e+02 Score=32.58 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
++-..+.+++++.+....+++...-+++.....++....+.++.+...+++.++-|..++.+-.++.+.++
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
No 475
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.03 E-value=1.2e+02 Score=33.61 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 635 le~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+.++..+++........+.+++.++..++.++.+|+..|+++.-+++.++++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 476
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.91 E-value=4.2e+02 Score=25.72 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ--------------------------------------- 652 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~--------------------------------------- 652 (1122)
..+......++.+++.+.+++..+...+.+.+...+.+..-
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 653 -------ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 653 -------l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+-.++++..+++.++.+++.+..++.++..+..
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=35.85 E-value=36 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHH
Q 001214 425 SCLRIQRDLRMYLAKKA 441 (1122)
Q Consensus 425 AAi~IQ~~~R~~~~rk~ 441 (1122)
||..||-+||.|..|+.
T Consensus 11 At~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 478
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=35.84 E-value=5.2e+02 Score=26.86 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 001214 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP 604 (1122)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~ 604 (1122)
++..+...|..||..|+..-...+..-..+...-......++.+..+-+..-........+-..++.........+
T Consensus 1 AvisALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslL---- 76 (178)
T PF14073_consen 1 AVISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLL---- 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHH----
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 605 VIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 605 ~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+.+++.+.+.+...+.+=....+.-..++.....-.........+++.++..+..|...-.-.+.+|..|++.+...
T Consensus 77 ---EKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 77 ---EKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE 153 (178)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 001214 685 RQQ 687 (1122)
Q Consensus 685 ~q~ 687 (1122)
+.+
T Consensus 154 ehq 156 (178)
T PF14073_consen 154 EHQ 156 (178)
T ss_pred HHH
No 479
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=35.78 E-value=8.2e+02 Score=29.08 Aligned_cols=163 Identities=19% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Q 001214 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEM------------------QLQFKESK 580 (1122)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l------------------e~~l~~~~ 580 (1122)
.+.++..|.+..+.|-+.+-.|......-+=+-.++-++--.|..+|-.++++. +.--+..+
T Consensus 62 ~~~rlr~leeEqerL~ssLlaLsSHFAqVQfRirQ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~le 141 (621)
T KOG3759|consen 62 DALRLRQLEEEQERLNSSLLALSSHFAQVQFRIRQMVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLE 141 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhh
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 001214 581 EKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID--------ETEKKFEETSKISEERLKQ 652 (1122)
Q Consensus 581 ~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~--------ele~~~~e~~~~~~~~~~~ 652 (1122)
++.+...+-++.+.+++.-++...-..-+-.---.--.++-+.-+++|+++++ ..|+-...+.....++..-
T Consensus 142 kq~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP 221 (621)
T KOG3759|consen 142 KQNERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDDALKQLVNP 221 (621)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhCh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
....+..+++|+.++.+|+-=|.=++.|+
T Consensus 222 ~k~KeQLV~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 222 FKEKEQLVDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.75 E-value=3.5e+02 Score=30.21 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccC
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 692 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~~~~ 692 (1122)
.++..+..|.+...++.+.+..+.....++.++...... ++-..+..+...+..+...+.+++.|+...++..++.+
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~ 195 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMS 195 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
No 481
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=35.20 E-value=4.6e+02 Score=26.03 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 556 EAKTQENAKLQSALQEMQLQF-KESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDE 634 (1122)
Q Consensus 556 ~~~~~e~~~L~~~l~~le~~l-~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1122)
.....+...+...+.+++..+ ..+...+.............+ .............+...+..++.....
T Consensus 4 ~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l----------~~~~~~~~~~~~~~~~~~~~l~~~~~k 73 (136)
T PF04871_consen 4 KSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKEL----------KEAEQAAEAELEELASEVKELEAEKEK 73 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 635 TEKKF-EETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1122)
Q Consensus 635 le~~~-~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 670 (1122)
+.... .+.+.+...+..-+.+...++..+...++.|
T Consensus 74 l~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 74 LKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 482
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=35.18 E-value=3.5e+02 Score=24.56 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~-~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+..+......+...-..|...++.+..++.+......-. .-.+..-..++..+.+.+..+.+.+.+++.....+++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q 92 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ 92 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 483
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.01 E-value=3.7e+02 Score=24.88 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1122)
Q Consensus 565 L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1122)
|+.++..++....+..............+ ++++..+..++.+..+.+-++....+.+......+..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~l--------------E~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTIL--------------EQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 645 ISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1122)
Q Consensus 645 ~~~~~~~~l~~~~~~~~~l~~~~~~le~~i 674 (1122)
...+...-+..++..-..+...+..++-++
T Consensus 67 ~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 67 QLSKSSELIEQLKETEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccC
No 484
>PLN02320 seryl-tRNA synthetase
Probab=34.86 E-value=1.7e+02 Score=35.54 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+++-.+..+..++..++++++.+....-+++.. .......+++.++...+.+++..+++++..+++++..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.71 E-value=2.4e+02 Score=33.75 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI----SEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~----~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
+.+-.+..+..++..++++|+.+....-+++.+..+. ..++..+..++.+++..++.++.++++++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.62 E-value=2.1e+02 Score=24.81 Aligned_cols=51 Identities=14% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 625 l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
+.+.++++...+.++.+.++....++......+..+..+..++.++++...
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=34.15 E-value=4.1e+02 Score=25.16 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEE-----------------------------TSKISEERLKQALEAESK 659 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e-----------------------------~~~~~~~~~~~l~~~~~~ 659 (1122)
.+.+++-.....|+.+++..-.....+|-++.+ ++.......++++=..++
T Consensus 5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~E 84 (120)
T KOG3478|consen 5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKE 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCccc
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIK 695 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q~~~~~~~~~ 695 (1122)
+..++..+.+++++..+.++.+..+++.+....|..
T Consensus 85 ikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~~a~ 120 (120)
T KOG3478|consen 85 IKRLENQIRDSQEEFEKQREAVIKLQQAAQPAAPAS 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
No 488
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.87 E-value=6.7e+02 Score=27.51 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001214 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVV 600 (1122)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~ 600 (1122)
+-.+..+-++..-|.+-.+.+.--++|+..+ -++++.-+.+.+..+-...++..+....+-..+.+...+++...
T Consensus 268 rhlsevqiakraeerrqieterlrqeeeeln-----ikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaee 342 (445)
T KOG2891|consen 268 RHLSEVQIAKRAEERRQIETERLRQEEEELN-----IKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEE 342 (445)
T ss_pred hhhhHHHHHHHHHHHhhhhHHHHhhhHhhhh-----hhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 601 QEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 601 ~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
+-....+.+..+..+....+--++++..++..+-..-..-+-++.......+-...+.++..-...+++|++++..-+..
T Consensus 343 ekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeeklk~e~qkikeleek~~eeeda 422 (445)
T KOG2891|consen 343 EKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDA 422 (445)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 001214 681 N 681 (1122)
Q Consensus 681 ~ 681 (1122)
+
T Consensus 423 l 423 (445)
T KOG2891|consen 423 L 423 (445)
T ss_pred H
No 489
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.47 E-value=7e+02 Score=27.60 Aligned_cols=179 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---
Q 001214 508 VARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKE--- 581 (1122)
Q Consensus 508 ~ark~~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~--- 581 (1122)
..+............+..+......|+..+..|..+.....+....+...-. .....|...+..+...+..+..
T Consensus 32 ~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 32 QLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHHHhhc--ccccccchhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 001214 582 ------------KLMKEIEVAKKEAEKV--PVVQEVPVIDHAVVEELTSENEKLKTLV-----------SSLEKKIDETE 636 (1122)
Q Consensus 582 ------------~l~~e~~~~~~~~ee~--~~~~e~~~~~~~~~~~L~~e~~kLe~~l-----------~~l~~~l~ele 636 (1122)
.+.....+++.+.+++ ..........+.+..+...-..+.+..+ ..+...+.+..
T Consensus 112 ~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~ 191 (264)
T PF06008_consen 112 SLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYN 191 (264)
T ss_pred HhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 637 ~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++.++.....+......+++.....-+..+.+++.+..+++++......
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.23 E-value=4.6e+02 Score=27.51 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.-..+.++..+..+...++.+.++++.+++++++... .+....-...+-+-+.+.++|.-|++-|..|+.|
T Consensus 179 KALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e------~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQ 250 (259)
T KOG4001|consen 179 KALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLE------TDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQ 250 (259)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.18 E-value=6.2e+02 Score=26.92 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 515 KLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1122)
Q Consensus 515 ~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1122)
.|+++..++..--.....|...+.+....+. ........+...+..-..+++.-+.+++.......-+.
T Consensus 18 QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~-----------~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVSLRAQLRELRAELR-----------NKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Q ss_pred hhcccccccchhhHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 595 EKVPVVQEVPVIDHAVVEEL-----------------------TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK 651 (1122)
Q Consensus 595 ee~~~~~e~~~~~~~~~~~L-----------------------~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~ 651 (1122)
+.+..++.......+..... ......|..+++.|+.++..+.....+.....+....
T Consensus 87 ekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~ 166 (202)
T PF06818_consen 87 EKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERR 166 (202)
T ss_pred hhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHH
Q 001214 652 QALEAESKI----VQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 652 ~l~~~~~~~----~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
.=.+...++ .+|+...-.|=.+...|+.++.
T Consensus 167 ~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 167 TWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.02 E-value=3.3e+02 Score=23.76 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
...++.--.+..+...+-+..+..+.........+...+...+..|...+..|.+.+.+|
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.97 E-value=1.3e+02 Score=37.60 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001214 426 CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYL 485 (1122)
Q Consensus 426 Ai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~ 485 (1122)
|..+++.-+..--|..-++.-.|++.||+.+||+++|++ ++..||.-|+...
T Consensus 10 a~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk--------~~~~I~~e~d~~f 61 (1096)
T KOG4427|consen 10 AAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKK--------AQIEIQEEFDNLF 61 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhh
No 494
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=32.94 E-value=9.5e+02 Score=30.38 Aligned_cols=194 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCcccccccccCCccccccCCCC
Q 001214 635 TEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGH 713 (1122)
Q Consensus 635 le~~~~e~~~~~~~~~~~l~~~~~~~-~~l~~~~~~le~~i~~Le~e~~~l~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1122)
+.+++..+++++++..+.+.+..... ...+.+++.|+..+++||.|.+-|..+....+............-.....+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~r~~~~~~~~~~~~~~~~ 81 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKRRKNVSSPSGTNSTSNST 81 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccc
Q ss_pred cccccccCCCCCCCCCCccCCCcch--HHHHhhhhHhh-hhcHHHHHHhh----------------------------hh
Q 001214 714 HVIEENISNEPQSATPVKKLGTESD--SKLRRSHIEHQ-HENVDALINCV----------------------------AK 762 (1122)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~e~~-~~~~~~l~~~i----------------------------~~ 762 (1122)
.....++....+...+...+....+ ..+..+-..+. +++-..++++| ..
T Consensus 82 ~~~~~~~~~~~~~~~s~~~k~~~~ep~~~~~~l~~~r~v~detSlf~D~l~~h~I~Gs~~ttie~LnkI~ld~~~~~~~~ 161 (654)
T PF09798_consen 82 STPESSSAANTSEESSPKSKKREIEPKKPYVPLNPNRIVPDETSLFFDHLWNHKINGSKRTTIEILNKICLDYIDDFQFK 161 (654)
T ss_pred cCCCcccccccccccchhhcccccCccccccccCcceecCCcHHHHHHHHHHhhcccccccHHHHHhhhhhccchhcccc
Q ss_pred cCCCCCCCCchHHHHHHHHhhhccchhhh--hHHHHHHHHHHHHhhccc-CCCcchhhHHHhHHHHHHH
Q 001214 763 NLGYCNGKPVAAFTIYKCLLHWKSFEAER--TSVFDRLIQMIGSAIENE-DDNDHMAYWLSNTSTLLFL 828 (1122)
Q Consensus 763 ~~~~~~~~p~~A~il~~c~~~~~~~~~~~--~~ll~~i~~~i~~~i~~~-~d~~~l~fWLsN~~~Ll~~ 828 (1122)
+.-...+.|..-.|.-+.++.-+...-+. ..++..++..|++++-.. +..-...|=+|=.+.-+.|
T Consensus 162 ~~~i~k~~~ig~~I~~~Lm~~kk~~rLD~lId~~le~la~LIk~i~~~~ke~~laVPFLvsLm~~si~F 230 (654)
T PF09798_consen 162 NFKISKREPIGKSIVELLMRSKKNMRLDKLIDTLLENLADLIKEIILHEKESKLAVPFLVSLMHQSISF 230 (654)
T ss_pred ceeeccCCcccHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHhhcccccceehHHHHHHHHHheec
No 495
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.94 E-value=2.6e+02 Score=24.24 Aligned_cols=51 Identities=6% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+.+.++++.+.+....+...++..++.....++..++.+.+++.++++-+.
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.81 E-value=2.5e+02 Score=26.78 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
.++=..+.+++..+..+-.+..++...+.++.++...|+-+...|++.+.+++..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~ 58 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAE 58 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 497
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.78 E-value=1.6e+02 Score=24.38 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 638 ~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
++.+++.+...+...+...++++.++.++++.+++.+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.77 E-value=9.2e+02 Score=28.77 Aligned_cols=229 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 001214 471 TRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAA---------KNKLEKQVEELT 541 (1122)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~---------~~~LE~kv~el~ 541 (1122)
..|+.........|..... ..+.....--..|-......--.++..++......+.. ......++.++.
T Consensus 144 ~~A~~i~n~~~~~y~~~~~--~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~ 221 (444)
T TIGR03017 144 RFAATVANAFAQAYIDTNI--ELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELS 221 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 001214 542 WRLQLEKRMRVDMEEAKTQ--------------ENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVID 607 (1122)
Q Consensus 542 ~~l~~e~~~~~~le~~~~~--------------e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~ 607 (1122)
.++...+....+....... .+..|..++.+++.++.++........-.+..+..++..++
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~------ 295 (444)
T TIGR03017 222 AQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLK------ 295 (444)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
..-..++..-...++..+..++.+..+++..+++.+....++... +.....|+++.+-.+.....+-+..+..+-+
T Consensus 296 ~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 296 SQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccCcccccccccCCccccccCC
Q 001214 688 SLLSTPIKKMSEHISAPATQSLEN 711 (1122)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1122)
.....+...+-+....|.....++
T Consensus 372 ~~~~~~~~~Vi~~a~~P~~P~~P~ 395 (444)
T TIGR03017 372 AQSNQTDISILNPAVPPLEPSSPR 395 (444)
T ss_pred hccCCCceEeeCCCCCCCCCCCCc
No 499
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=32.56 E-value=4.7e+02 Score=29.55 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 001214 535 KQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVV 611 (1122)
Q Consensus 535 ~kv~el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~ 611 (1122)
.+|.|++.+....--..++|...+. -++.-|+..+++++.+|.....+ .
T Consensus 119 skv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re----------------------------~ 170 (405)
T KOG2010|consen 119 SKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRE----------------------------N 170 (405)
T ss_pred hhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHH----------------------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~ 648 (1122)
.++++|...++..++.|..+..++.+.+..-+..+++
T Consensus 171 eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 171 EEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=32.53 E-value=5.9e+02 Score=26.49 Aligned_cols=173 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 513 LRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKK 592 (1122)
Q Consensus 513 ~~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~ 592 (1122)
+..|+-.-+.+.+|.-.+..-|..+..+......-+..-............++.....++..++..++.+..--..++.-
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLey 82 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 593 EAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1122)
Q Consensus 593 ~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~ 672 (1122)
+..-+...+-....-.++-..+..+...-...+..=.++++-+|.+...+...-.-...++..++.++..=+-+-+-+++
T Consensus 83 MRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQd 162 (178)
T PF14073_consen 83 MRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQD 162 (178)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHH
Q 001214 673 KVSDMETENQILR 685 (1122)
Q Consensus 673 ~i~~Le~e~~~l~ 685 (1122)
+-..|+..++.-|
T Consensus 163 kAaqLQt~lE~nr 175 (178)
T PF14073_consen 163 KAAQLQTGLETNR 175 (178)
T ss_pred HHHHHHhhHHHhh
Done!