Query 001214
Match_columns 1122
No_of_seqs 536 out of 2944
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 4E-135 1E-139 1298.5 60.0 644 1-660 365-1046(1080)
2 1i84_S Smooth muscle myosin he 100.0 5E-111 2E-115 1103.3 39.9 417 1-417 391-837 (1184)
3 1kk8_A Myosin heavy chain, str 100.0 3E-108 9E-113 1018.3 33.4 416 1-417 388-824 (837)
4 1w7j_A Myosin VA; motor protei 100.0 4E-106 1E-110 994.3 34.4 399 1-401 365-794 (795)
5 4anj_A Unconventional myosin-V 100.0 9E-105 3E-109 1002.5 30.8 427 1-447 380-829 (1052)
6 2ycu_A Non muscle myosin 2C, a 100.0 6E-103 2E-107 995.0 27.8 420 1-420 360-809 (995)
7 1g8x_A Myosin II heavy chain f 100.0 1E-100 5E-105 970.9 47.7 419 1-436 383-808 (1010)
8 1lkx_A Myosin IE heavy chain; 100.0 3E-100 1E-104 929.7 26.9 373 1-374 310-696 (697)
9 1w9i_A Myosin II heavy chain; 100.0 5E-100 2E-104 931.8 27.6 377 1-379 383-767 (770)
10 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-100 8E-105 937.7 24.9 374 1-375 389-782 (783)
11 2v26_A Myosin VI; calmodulin-b 100.0 3.9E-99 1E-103 932.5 30.6 386 1-389 376-784 (784)
12 2f6h_X Myosin-2, type V myosin 100.0 2E-59 6.9E-64 544.7 27.5 343 738-1121 6-385 (419)
13 3mmi_A Myosin-4; globular tail 100.0 4.4E-54 1.5E-58 479.6 22.6 319 739-1115 17-351 (386)
14 2dfs_A Myosin-5A; myosin-V, in 99.9 6.2E-21 2.1E-25 244.8 26.0 126 391-520 761-890 (1080)
15 1i84_S Smooth muscle myosin he 99.0 1.8E-09 6.2E-14 142.1 18.9 48 443-490 789-837 (1184)
16 2ix7_C Myosin-5A; contractIle 99.0 4.6E-11 1.6E-15 98.7 0.6 56 372-427 2-57 (58)
17 2ix7_C Myosin-5A; contractIle 98.9 2.1E-09 7.1E-14 88.7 6.4 53 423-475 5-57 (58)
18 1n2d_C IQ2 and IQ3 motifs from 98.8 1.1E-09 3.7E-14 86.7 2.4 46 397-442 2-47 (48)
19 1n2d_C IQ2 and IQ3 motifs from 98.6 1.1E-07 3.7E-12 75.1 6.8 45 446-490 3-47 (48)
20 1wdc_A Scallop myosin; calcium 98.1 8.3E-07 2.8E-11 74.5 2.7 47 370-416 1-50 (64)
21 2bl0_A Major plasmodial myosin 97.9 3E-06 1E-10 70.9 2.3 44 373-416 2-48 (63)
22 2v71_A Nuclear distribution pr 97.5 0.0078 2.7E-07 60.7 19.5 20 563-582 59-78 (189)
23 1wdc_A Scallop myosin; calcium 97.3 6.3E-05 2.2E-09 63.0 1.7 47 397-443 5-52 (64)
24 2bl0_A Major plasmodial myosin 97.3 5.3E-05 1.8E-09 63.2 1.0 47 397-443 3-50 (63)
25 3na7_A HP0958; flagellar bioge 97.1 0.089 3E-06 56.8 24.0 51 609-659 90-140 (256)
26 3vkg_A Dynein heavy chain, cyt 96.8 0.099 3.4E-06 73.8 26.8 31 511-541 1924-1954(3245)
27 1kk8_A Myosin heavy chain, str 96.8 0.00033 1.1E-08 87.6 1.6 41 424-464 780-823 (837)
28 3o0z_A RHO-associated protein 96.5 0.36 1.2E-05 47.4 20.7 15 531-545 9-23 (168)
29 3na7_A HP0958; flagellar bioge 96.0 1.1 3.9E-05 48.0 23.6 47 610-656 98-144 (256)
30 3vkg_A Dynein heavy chain, cyt 95.9 0.46 1.6E-05 67.3 25.1 34 651-684 2070-2103(3245)
31 3oja_B Anopheles plasmodium-re 95.8 0.15 5.1E-06 62.1 17.9 77 611-687 504-580 (597)
32 2efr_A General control protein 95.6 1.9 6.4E-05 42.1 21.3 55 613-667 74-128 (155)
33 3o0z_A RHO-associated protein 95.5 1.9 6.4E-05 42.4 20.3 18 516-533 22-39 (168)
34 2v71_A Nuclear distribution pr 95.3 1.9 6.4E-05 43.5 20.1 129 522-660 11-139 (189)
35 2fxo_A Myosin heavy chain, car 95.2 1.4 4.8E-05 41.9 18.3 35 651-685 90-124 (129)
36 2fxo_A Myosin heavy chain, car 95.1 2.3 7.9E-05 40.4 20.1 41 608-648 68-108 (129)
37 3oja_B Anopheles plasmodium-re 95.1 0.15 5.3E-06 62.0 14.4 61 621-681 521-581 (597)
38 2efr_A General control protein 94.9 3 0.0001 40.6 21.5 35 613-647 95-129 (155)
39 3gn4_A Myosin-VI; unconvention 94.8 0.23 8E-06 47.8 11.5 55 432-494 14-68 (148)
40 2v66_B Nuclear distribution pr 94.5 2.8 9.6E-05 38.3 17.4 66 610-675 36-101 (111)
41 3hnw_A Uncharacterized protein 94.3 0.33 1.1E-05 46.7 11.4 69 615-683 67-135 (138)
42 2kxw_B Sodium channel protein 93.5 0.022 7.6E-07 38.2 1.1 20 421-440 4-23 (27)
43 3bas_A Myosin heavy chain, str 93.4 1.1 3.8E-05 39.6 12.2 75 607-681 12-86 (89)
44 2l53_B CAM, voltage-gated sodi 93.3 0.034 1.2E-06 38.5 1.8 21 421-441 4-24 (31)
45 2ocy_A RAB guanine nucleotide 92.8 4.1 0.00014 39.5 16.1 71 609-686 72-143 (154)
46 3u1c_A Tropomyosin alpha-1 cha 92.7 4.1 0.00014 36.9 15.3 58 621-678 42-99 (101)
47 3gn4_A Myosin-VI; unconvention 92.7 0.16 5.6E-06 48.8 6.2 57 383-447 13-69 (148)
48 2ocy_A RAB guanine nucleotide 91.9 9.7 0.00033 36.9 20.6 50 626-675 97-146 (154)
49 2i1j_A Moesin; FERM, coiled-co 91.2 0.21 7.2E-06 60.2 6.4 20 564-583 339-358 (575)
50 3ol1_A Vimentin; structural ge 91.2 3.4 0.00012 38.6 13.3 62 617-685 42-103 (119)
51 3u59_A Tropomyosin beta chain; 91.2 6.4 0.00022 35.6 14.8 56 622-677 43-98 (101)
52 4gkw_A Spindle assembly abnorm 91.0 9.4 0.00032 35.2 17.3 24 610-633 47-70 (167)
53 1x79_B RAB GTPase binding effe 90.9 4.1 0.00014 37.3 13.0 31 656-686 75-105 (112)
54 3swk_A Vimentin; cytoskeleton, 90.8 2.7 9.3E-05 36.8 11.4 77 610-686 8-84 (86)
55 3ol1_A Vimentin; structural ge 90.4 9.1 0.00031 35.7 15.5 12 657-668 89-100 (119)
56 3oja_A Leucine-rich immune mol 90.4 3.5 0.00012 48.5 16.0 16 641-656 453-468 (487)
57 3u1c_A Tropomyosin alpha-1 cha 90.3 10 0.00034 34.3 15.8 54 611-671 46-99 (101)
58 2a2f_X Exocyst complex compone 90.1 2.8 9.5E-05 46.4 13.6 100 943-1045 216-319 (325)
59 3hnw_A Uncharacterized protein 89.8 2.5 8.5E-05 40.6 11.3 54 629-682 74-127 (138)
60 3a7p_A Autophagy protein 16; c 89.7 3.6 0.00012 39.5 12.1 62 625-686 70-131 (152)
61 2l53_B CAM, voltage-gated sodi 89.7 0.3 1E-05 33.9 3.3 22 469-490 4-25 (31)
62 2kxw_B Sodium channel protein 89.5 0.21 7.2E-06 33.5 2.4 20 469-488 4-23 (27)
63 1ic2_A Tropomyosin alpha chain 89.5 5.2 0.00018 34.6 12.1 64 621-684 11-74 (81)
64 2v66_B Nuclear distribution pr 88.7 14 0.00048 33.8 17.2 57 612-668 45-101 (111)
65 2oqq_A Transcription factor HY 88.6 1.1 3.8E-05 32.8 5.8 34 653-686 5-38 (42)
66 3mq7_A Bone marrow stromal ant 88.3 9.1 0.00031 34.7 12.8 27 660-686 73-99 (121)
67 2eqb_B RAB guanine nucleotide 87.2 15 0.00052 32.6 13.4 11 570-580 8-18 (97)
68 3u59_A Tropomyosin beta chain; 86.5 18 0.00062 32.6 15.3 20 652-671 80-99 (101)
69 1ic2_A Tropomyosin alpha chain 85.2 11 0.00037 32.6 11.5 62 611-672 8-69 (81)
70 2jee_A YIIU; FTSZ, septum, coi 85.2 12 0.00042 32.0 11.4 12 618-629 22-33 (81)
71 4h22_A Leucine-rich repeat fli 84.1 11 0.00038 33.7 11.0 65 611-675 18-82 (103)
72 3q8t_A Beclin-1; autophagy, AT 83.2 25 0.00085 31.4 15.5 67 611-677 27-93 (96)
73 3ghg_A Fibrinogen alpha chain; 83.1 47 0.0016 38.2 18.4 15 565-579 62-76 (562)
74 2e7s_A RAB guanine nucleotide 83.0 2.9 9.9E-05 39.5 7.3 68 611-685 62-130 (135)
75 3bas_A Myosin heavy chain, str 82.9 17 0.00057 32.0 12.0 73 612-684 10-82 (89)
76 2b9c_A Striated-muscle alpha t 82.6 7.2 0.00025 37.8 10.3 11 609-619 52-62 (147)
77 2b9c_A Striated-muscle alpha t 82.4 6.4 0.00022 38.2 9.8 36 646-681 75-110 (147)
78 3ghg_A Fibrinogen alpha chain; 81.7 9.9 0.00034 43.6 12.3 21 559-579 63-83 (562)
79 3tnu_B Keratin, type II cytosk 80.7 19 0.00067 33.9 12.5 72 608-682 35-106 (129)
80 2eqb_B RAB guanine nucleotide 80.5 31 0.001 30.6 13.6 24 610-633 41-64 (97)
81 4anj_A Unconventional myosin-V 80.4 1.7 6E-05 55.6 6.5 41 423-464 775-815 (1052)
82 3swk_A Vimentin; cytoskeleton, 80.3 18 0.00061 31.6 11.0 65 613-677 18-82 (86)
83 2w83_C C-JUN-amino-terminal ki 79.8 19 0.00064 30.2 10.1 26 657-682 50-75 (77)
84 3cvf_A Homer-3, homer protein 79.6 8.6 0.00029 32.9 8.4 25 610-634 14-38 (79)
85 3s4r_A Vimentin; alpha-helix, 78.6 28 0.00096 30.8 11.9 70 608-686 22-91 (93)
86 3q8t_A Beclin-1; autophagy, AT 78.5 36 0.0012 30.3 13.2 37 613-649 8-44 (96)
87 3c9i_A Tail needle protein GP2 78.5 46 0.0016 33.2 14.3 75 618-692 79-153 (242)
88 3a7p_A Autophagy protein 16; c 78.3 28 0.00095 33.5 12.4 58 611-668 70-127 (152)
89 2e7s_A RAB guanine nucleotide 78.0 18 0.00061 34.2 10.8 19 533-551 44-62 (135)
90 3mq9_A Bone marrow stromal ant 77.6 33 0.0011 39.9 16.1 27 658-684 443-469 (471)
91 2ycu_A Non muscle myosin 2C, a 77.6 0.55 1.9E-05 60.2 0.7 19 473-491 789-807 (995)
92 3fhn_A Protein transport prote 77.4 20 0.00069 43.6 14.0 97 945-1046 562-658 (706)
93 3iv1_A Tumor susceptibility ge 76.6 26 0.00089 29.8 10.4 57 620-676 15-71 (78)
94 2w6a_A ARF GTPase-activating p 76.2 15 0.0005 29.1 7.9 28 659-686 35-62 (63)
95 1wt6_A Myotonin-protein kinase 76.2 20 0.00067 30.6 9.4 30 657-686 44-73 (81)
96 1fxk_A Prefoldin; archaeal pro 76.1 30 0.001 31.2 12.0 30 657-686 71-100 (107)
97 3cve_A Homer protein homolog 1 75.8 33 0.0011 28.7 10.6 25 610-634 8-32 (72)
98 3cvf_A Homer-3, homer protein 75.6 18 0.00062 30.9 9.2 52 636-687 19-70 (79)
99 3tnu_A Keratin, type I cytoske 75.5 22 0.00074 33.7 11.1 68 611-681 40-107 (131)
100 1l8d_A DNA double-strand break 75.3 25 0.00084 32.1 11.3 32 655-686 68-99 (112)
101 1t2k_D Cyclic-AMP-dependent tr 74.8 19 0.00066 29.1 9.1 38 651-688 22-59 (61)
102 2zqm_A Prefoldin beta subunit 74.3 44 0.0015 30.5 12.9 26 661-686 80-105 (117)
103 1wt6_A Myotonin-protein kinase 74.0 35 0.0012 29.1 10.4 39 642-680 36-74 (81)
104 2zqm_A Prefoldin beta subunit 73.8 35 0.0012 31.2 12.0 40 647-686 73-112 (117)
105 3qh9_A Liprin-beta-2; coiled-c 73.0 34 0.0011 29.1 10.0 39 642-680 38-76 (81)
106 3cve_A Homer protein homolog 1 72.9 36 0.0012 28.5 10.2 54 634-687 11-64 (72)
107 1go4_E MAD1 (mitotic arrest de 72.8 18 0.0006 32.4 8.9 30 610-639 13-42 (100)
108 2b5u_A Colicin E3; high resolu 71.7 1.4E+02 0.0048 34.1 17.7 18 567-584 349-366 (551)
109 3mq7_A Bone marrow stromal ant 71.0 62 0.0021 29.4 12.2 37 651-687 71-107 (121)
110 3nmd_A CGMP dependent protein 70.9 12 0.00042 31.3 6.8 29 657-685 39-67 (72)
111 1m1j_B Fibrinogen beta chain; 70.5 1.1E+02 0.0038 35.2 17.3 30 657-686 167-196 (464)
112 3s9g_A Protein hexim1; cyclin 70.5 18 0.00062 31.7 8.1 24 664-687 64-87 (104)
113 1deq_A Fibrinogen (alpha chain 70.0 61 0.0021 35.8 14.2 17 564-580 64-80 (390)
114 2fji_1 Exocyst complex compone 69.9 62 0.0021 36.7 15.4 123 947-1073 219-349 (399)
115 1d7m_A Cortexillin I; coiled-c 69.7 53 0.0018 28.2 12.5 26 657-682 73-98 (101)
116 3efg_A Protein SLYX homolog; x 69.4 11 0.00037 32.3 6.5 9 676-684 46-54 (78)
117 1fxk_A Prefoldin; archaeal pro 69.1 62 0.0021 29.0 12.3 29 653-681 74-102 (107)
118 3a7o_A Autophagy protein 16; c 68.6 41 0.0014 27.6 9.2 19 668-686 49-67 (75)
119 1go4_E MAD1 (mitotic arrest de 68.0 25 0.00084 31.5 8.7 24 627-650 16-39 (100)
120 2w83_C C-JUN-amino-terminal ki 67.6 40 0.0014 28.3 9.2 16 662-677 48-63 (77)
121 3ni0_A Bone marrow stromal ant 67.3 64 0.0022 28.2 11.3 23 663-685 65-87 (99)
122 1fxk_C Protein (prefoldin); ar 66.2 78 0.0027 29.7 12.9 39 649-687 93-131 (133)
123 3mq9_A Bone marrow stromal ant 64.8 93 0.0032 35.9 16.0 20 563-582 400-419 (471)
124 1ci6_A Transcription factor AT 62.6 30 0.001 28.3 7.7 35 652-686 24-58 (63)
125 1l8d_A DNA double-strand break 62.3 77 0.0026 28.7 11.6 32 651-682 71-102 (112)
126 3m9b_A Proteasome-associated A 62.1 5.8 0.0002 41.6 4.1 41 646-686 56-96 (251)
127 3nmd_A CGMP dependent protein 62.0 22 0.00077 29.7 6.8 9 665-673 54-62 (72)
128 3iox_A AGI/II, PA; alpha helix 62.0 1.7E+02 0.0059 33.5 16.3 34 653-686 75-108 (497)
129 2wt7_A Proto-oncogene protein 61.9 51 0.0018 26.8 9.1 35 652-686 24-58 (63)
130 3qh9_A Liprin-beta-2; coiled-c 61.9 72 0.0025 27.1 9.8 46 613-658 23-68 (81)
131 3s9g_A Protein hexim1; cyclin 61.7 77 0.0026 27.9 10.3 31 657-687 64-94 (104)
132 2v4h_A NF-kappa-B essential mo 60.7 97 0.0033 28.0 13.1 32 610-641 25-56 (110)
133 4gkw_A Spindle assembly abnorm 60.6 1E+02 0.0036 28.4 20.2 22 560-581 60-81 (167)
134 2k48_A Nucleoprotein; viral pr 60.3 60 0.0021 28.9 9.5 32 609-640 35-66 (107)
135 2xdj_A Uncharacterized protein 59.9 50 0.0017 28.6 8.9 33 654-686 23-55 (83)
136 1w7j_A Myosin VA; motor protei 59.0 6.9 0.00024 48.7 4.8 28 470-497 767-794 (795)
137 1gu4_A CAAT/enhancer binding p 58.9 48 0.0016 28.3 8.6 36 653-688 38-73 (78)
138 3i00_A HIP-I, huntingtin-inter 58.4 97 0.0033 28.7 11.3 68 610-687 16-83 (120)
139 2k48_A Nucleoprotein; viral pr 57.6 85 0.0029 28.0 10.0 20 664-683 81-100 (107)
140 4dck_A Sodium channel protein 57.0 4 0.00014 40.3 1.8 24 421-444 128-151 (168)
141 1m1j_C Fibrinogen gamma chain; 56.6 1.6E+02 0.0056 33.3 15.1 29 658-686 105-133 (409)
142 1m1j_A Fibrinogen alpha subuni 56.4 2.6E+02 0.009 31.6 16.3 25 659-683 133-157 (491)
143 1gd2_E Transcription factor PA 56.3 24 0.00081 29.5 6.1 30 655-684 40-69 (70)
144 3efg_A Protein SLYX homolog; x 56.1 30 0.001 29.5 6.9 45 632-676 16-60 (78)
145 1jnm_A Proto-oncogene C-JUN; B 55.8 32 0.0011 27.9 6.8 36 651-686 22-57 (62)
146 1hjb_A Ccaat/enhancer binding 54.9 61 0.0021 28.2 8.7 37 654-690 39-75 (87)
147 1m1j_C Fibrinogen gamma chain; 53.1 2.2E+02 0.0075 32.2 15.5 14 814-829 223-236 (409)
148 3n1e_A Vacuolar protein sortin 53.0 87 0.003 29.9 10.3 78 893-987 15-92 (141)
149 3iox_A AGI/II, PA; alpha helix 52.6 2.9E+02 0.0099 31.7 16.1 31 648-678 77-107 (497)
150 2ke4_A CDC42-interacting prote 51.6 1.3E+02 0.0045 26.8 11.4 72 563-636 18-89 (98)
151 4h22_A Leucine-rich repeat fli 51.6 93 0.0032 27.8 9.4 58 612-669 26-83 (103)
152 1m1j_B Fibrinogen beta chain; 51.3 3.3E+02 0.011 31.3 17.1 24 663-686 166-189 (464)
153 4etp_A Kinesin-like protein KA 50.5 20 0.00069 40.8 6.6 14 673-686 46-59 (403)
154 3m91_A Proteasome-associated A 50.5 63 0.0022 25.1 7.2 29 656-684 21-49 (51)
155 3tnu_A Keratin, type I cytoske 50.4 1.6E+02 0.0056 27.5 13.1 14 563-576 41-54 (131)
156 3i00_A HIP-I, huntingtin-inter 50.3 74 0.0025 29.5 9.1 17 562-578 42-58 (120)
157 3u06_A Protein claret segregat 49.7 19 0.00066 41.1 6.2 24 619-642 6-29 (412)
158 2no2_A HIP-I, huntingtin-inter 49.4 1.5E+02 0.0052 26.8 12.5 12 616-627 29-40 (107)
159 1gk4_A Vimentin; intermediate 49.1 1.2E+02 0.0042 26.1 9.8 15 659-673 34-48 (84)
160 3tnu_B Keratin, type II cytosk 48.9 1.7E+02 0.0058 27.3 12.3 22 562-583 77-98 (129)
161 3htk_A Structural maintenance 48.3 99 0.0034 24.5 8.6 24 657-680 32-55 (60)
162 3k29_A Putative uncharacterize 47.5 2.1E+02 0.0071 27.9 22.9 7 623-629 92-98 (169)
163 2lw1_A ABC transporter ATP-bin 45.4 1.5E+02 0.0051 25.8 10.0 30 608-637 55-84 (89)
164 4dck_A Sodium channel protein 45.4 19 0.00064 35.6 4.5 24 469-492 128-151 (168)
165 1wle_A Seryl-tRNA synthetase; 45.3 77 0.0026 37.1 10.5 28 1065-1093 441-468 (501)
166 2ke4_A CDC42-interacting prote 45.2 1.1E+02 0.0037 27.3 9.0 69 617-685 16-89 (98)
167 3hr0_A COG4; conserved oligome 45.0 3E+02 0.01 29.0 15.1 119 948-1074 127-249 (263)
168 3htk_A Structural maintenance 44.6 1.2E+02 0.004 24.1 8.7 19 655-673 37-55 (60)
169 2xnx_M M protein, M1-BC1; cell 44.0 62 0.0021 30.7 7.5 26 661-686 83-108 (146)
170 3qne_A Seryl-tRNA synthetase, 43.7 55 0.0019 38.0 8.8 72 609-684 33-104 (485)
171 2ic6_A Nucleocapsid protein; h 42.0 1.6E+02 0.0055 25.0 9.2 29 611-639 7-35 (78)
172 2xdj_A Uncharacterized protein 41.9 1.7E+02 0.0058 25.2 10.0 41 646-686 22-62 (83)
173 2lw1_A ABC transporter ATP-bin 41.3 1.1E+02 0.0037 26.6 8.4 21 617-637 23-43 (89)
174 2zdi_C Prefoldin subunit alpha 41.1 1.6E+02 0.0056 28.2 10.6 40 648-687 102-141 (151)
175 1ik9_A DNA repair protein XRCC 41.1 2.6E+02 0.0089 28.6 12.5 23 612-634 142-164 (213)
176 1t2k_D Cyclic-AMP-dependent tr 40.4 1.4E+02 0.0048 23.9 9.1 32 648-679 26-57 (61)
177 2dq0_A Seryl-tRNA synthetase; 40.4 54 0.0018 37.9 8.1 73 609-685 31-103 (455)
178 1wlq_A Geminin; coiled-coil; 2 39.7 83 0.0028 27.0 6.8 32 655-686 35-66 (83)
179 1uii_A Geminin; human, DNA rep 39.7 1E+02 0.0034 26.5 7.4 32 655-686 43-74 (83)
180 1f5n_A Interferon-induced guan 39.3 1.4E+02 0.0049 35.6 11.8 10 195-204 96-105 (592)
181 4etp_A Kinesin-like protein KA 39.3 63 0.0022 36.7 8.4 14 949-962 324-337 (403)
182 1t6f_A Geminin; coiled-coil, c 39.3 88 0.003 22.1 5.6 25 661-685 10-34 (37)
183 2ic6_A Nucleocapsid protein; h 39.0 1.8E+02 0.0061 24.7 9.2 20 664-683 51-70 (78)
184 2ic9_A Nucleocapsid protein; h 38.4 2E+02 0.0069 25.3 9.2 29 611-639 7-35 (96)
185 1dip_A Delta-sleep-inducing pe 38.3 21 0.00073 29.6 2.9 30 659-688 16-45 (78)
186 4fi5_A Nucleoprotein; structur 37.5 2.3E+02 0.008 25.6 10.2 31 610-640 23-53 (113)
187 3he5_B Synzip2; heterodimeric 37.4 1.2E+02 0.0041 22.2 6.5 16 665-680 31-46 (52)
188 3lss_A Seryl-tRNA synthetase; 37.2 1.4E+02 0.0047 34.7 10.8 27 1065-1093 435-461 (484)
189 2w6a_A ARF GTPase-activating p 36.5 1.6E+02 0.0055 23.4 8.4 36 653-688 22-57 (63)
190 4emc_A Monopolin complex subun 36.1 96 0.0033 30.9 7.8 28 610-637 21-48 (190)
191 1deq_A Fibrinogen (alpha chain 35.6 4.9E+02 0.017 28.8 17.3 15 531-545 63-77 (390)
192 2z5i_A TM, general control pro 35.0 87 0.003 24.4 5.9 36 651-686 5-40 (52)
193 2yy0_A C-MYC-binding protein; 34.9 49 0.0017 26.0 4.5 30 609-638 19-48 (53)
194 1gmj_A ATPase inhibitor; coile 34.9 1.5E+02 0.0051 25.6 7.7 14 666-679 59-72 (84)
195 2akf_A Coronin-1A; coiled coil 33.7 49 0.0017 22.2 3.5 23 614-636 4-26 (32)
196 1hjb_A Ccaat/enhancer binding 33.6 2E+02 0.007 24.9 8.6 36 649-684 41-76 (87)
197 1lwu_C Fibrinogen gamma chain; 33.5 86 0.0029 34.4 7.8 30 657-686 25-54 (323)
198 1ik9_A DNA repair protein XRCC 32.9 3E+02 0.01 28.2 11.4 52 264-317 17-68 (213)
199 3uux_B Mitochondrial division 32.2 3.1E+02 0.011 28.3 11.1 43 632-674 179-221 (242)
200 2yko_A LINE-1 ORF1P; RNA-bindi 31.8 90 0.0031 32.3 7.1 17 658-674 34-50 (233)
201 1kd8_A GABH AIV, GCN4 acid bas 31.7 61 0.0021 22.9 3.9 15 665-679 15-29 (36)
202 1f5n_A Interferon-induced guan 31.6 4.8E+02 0.016 31.0 14.6 13 68-80 92-104 (592)
203 2oto_A M protein; helical coil 31.4 3.6E+02 0.012 25.9 18.8 8 565-572 55-62 (155)
204 4dzn_A Coiled-coil peptide CC- 30.9 1.1E+02 0.0037 20.4 4.7 26 661-686 5-30 (33)
205 1g8x_A Myosin II heavy chain f 30.5 77 0.0026 40.6 7.9 59 389-447 754-816 (1010)
206 3m9b_A Proteasome-associated A 30.3 36 0.0012 35.6 3.9 39 650-688 53-91 (251)
207 1ses_A Seryl-tRNA synthetase; 30.2 1E+02 0.0036 35.1 8.3 29 1064-1093 384-412 (421)
208 3a2a_A Voltage-gated hydrogen 30.2 1.5E+02 0.005 23.2 6.1 21 522-542 12-32 (58)
209 3mov_A Lamin-B1; LMNB1, B-type 30.0 1.3E+02 0.0045 26.6 7.0 16 613-628 16-31 (95)
210 1kd8_A GABH AIV, GCN4 acid bas 30.0 1E+02 0.0035 21.8 4.8 25 608-632 7-31 (36)
211 2yy0_A C-MYC-binding protein; 29.9 91 0.0031 24.4 5.2 20 617-636 20-39 (53)
212 4emc_A Monopolin complex subun 29.7 2.9E+02 0.01 27.4 10.0 10 793-802 170-179 (190)
213 4fm3_A Uncharacterized hypothe 29.5 3E+02 0.01 24.4 9.2 31 651-681 64-94 (98)
214 3etw_A Adhesin A; antiparallel 28.8 3.5E+02 0.012 24.9 15.2 16 663-678 80-95 (119)
215 2zxx_A Geminin; coiled-coil, c 28.3 1.3E+02 0.0046 25.5 6.3 26 659-684 35-60 (79)
216 3a7o_A Autophagy protein 16; c 28.1 2.5E+02 0.0086 23.1 8.9 52 628-679 23-74 (75)
217 1gmj_A ATPase inhibitor; coile 28.0 2.1E+02 0.0072 24.6 7.5 21 658-678 58-78 (84)
218 3k29_A Putative uncharacterize 27.9 4.3E+02 0.015 25.7 20.6 35 612-646 74-108 (169)
219 1gu4_A CAAT/enhancer binding p 27.5 2.8E+02 0.0097 23.5 8.5 28 651-678 43-70 (78)
220 3lay_A Zinc resistance-associa 27.2 1.5E+02 0.0053 29.3 7.7 25 657-681 112-136 (175)
221 2b5u_A Colicin E3; high resolu 27.1 7.6E+02 0.026 28.3 18.5 19 264-282 203-221 (551)
222 3ljm_A Coil Ser L9C; de novo d 27.0 1.1E+02 0.0037 20.1 4.2 14 619-632 11-24 (31)
223 3dvk_B Voltage-dependent R-typ 27.0 21 0.00073 22.9 0.9 15 425-439 8-22 (23)
224 3ra3_B P2F; coiled coil domain 26.9 54 0.0018 21.0 2.7 22 663-684 5-26 (28)
225 3u06_A Protein claret segregat 26.0 1.3E+02 0.0045 34.2 8.0 14 1006-1019 332-345 (412)
226 1lwu_C Fibrinogen gamma chain; 25.9 1.3E+02 0.0044 32.9 7.6 8 814-821 145-152 (323)
227 3ghg_B Fibrinogen beta chain; 25.1 7.5E+02 0.026 28.2 13.7 31 657-687 162-192 (461)
228 3uux_B Mitochondrial division 25.0 5.2E+02 0.018 26.7 11.3 79 611-689 151-229 (242)
229 2l5g_B Putative uncharacterize 24.9 1.4E+02 0.0049 22.0 5.0 27 610-636 10-36 (42)
230 2wvr_A Geminin; DNA replicatio 24.9 1.8E+02 0.0061 29.2 7.5 23 663-685 120-142 (209)
231 1gd2_E Transcription factor PA 24.8 3E+02 0.01 22.8 9.1 19 559-577 49-67 (70)
232 2akf_A Coronin-1A; coiled coil 24.5 1.6E+02 0.0056 19.7 4.8 16 663-678 11-26 (32)
233 2wt7_A Proto-oncogene protein 24.2 2.8E+02 0.0096 22.3 9.5 31 649-679 28-58 (63)
234 3etw_A Adhesin A; antiparallel 24.2 4.2E+02 0.014 24.4 13.3 32 654-686 78-109 (119)
235 4dk0_A Putative MACA; alpha-ha 24.1 2.7E+02 0.0092 30.6 10.3 35 653-687 117-151 (369)
236 2dgc_A Protein (GCN4); basic d 23.8 2.4E+02 0.0081 22.8 6.9 23 663-685 35-57 (63)
237 2q6q_A Spindle POLE BODY compo 23.7 3E+02 0.01 22.5 9.3 44 643-686 16-59 (74)
238 3swy_A Cyclic nucleotide-gated 23.6 2.4E+02 0.0083 21.4 6.9 10 564-573 34-43 (46)
239 2w6b_A RHO guanine nucleotide 22.8 2.8E+02 0.0094 21.7 7.6 35 610-644 11-45 (56)
240 3m48_A General control protein 22.6 1E+02 0.0035 21.5 3.6 28 652-679 1-28 (33)
241 4fi5_A Nucleoprotein; structur 22.1 4.4E+02 0.015 23.8 10.1 55 525-579 26-88 (113)
242 1kd8_B GABH BLL, GCN4 acid bas 22.1 1.5E+02 0.0051 21.0 4.4 23 608-630 7-29 (36)
243 3trt_A Vimentin; cytoskeleton, 21.4 3.5E+02 0.012 22.4 11.4 27 659-685 50-76 (77)
244 1yke_B RNA polymerase II holoe 21.0 5.6E+02 0.019 24.6 10.7 13 588-600 71-83 (151)
245 3he5_B Synzip2; heterodimeric 20.2 2.6E+02 0.0089 20.4 6.9 8 664-671 37-44 (52)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=4.1e-135 Score=1298.46 Aligned_cols=644 Identities=38% Similarity=0.627 Sum_probs=524.7
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.++||.|++|+++++|..+||||||+||++||+|||.+||.+|+++....+|||||||||||+|
T Consensus 365 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f 444 (1080)
T 2dfs_A 365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (1080)
T ss_dssp TCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCC
T ss_pred CCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|+|||++|
T Consensus 445 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f 523 (1080)
T 2dfs_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW 523 (1080)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHH
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHh-cCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhc-CCcccccccccchhh----
Q 001214 161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSAS-KCSFVSSLFLPLAEE---- 234 (1122)
Q Consensus 161 ~~kl~~~~-~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S-~~~~v~~lf~~~~~~---- 234 (1122)
++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++++|++| +++||+.||+.....
T Consensus 524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~ 603 (1080)
T 2dfs_A 524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603 (1080)
T ss_dssp HHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC---------
T ss_pred HHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhcccccccccc
Confidence 99999998 999999999998899999999999999999999999999999999999999 999999999864210
Q ss_pred -----------------------ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhh
Q 001214 235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR 291 (1122)
Q Consensus 235 -----------------------~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr 291 (1122)
..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++|||
T Consensus 604 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr 683 (1080)
T 2dfs_A 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR 683 (1080)
T ss_dssp ----------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHh
Confidence 011235689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhh
Q 001214 292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR 369 (1122)
Q Consensus 292 ~~gvle~iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~ 369 (1122)
|+||+|+|||+++|||+|++|.+|+.||++|+|...+.. |.+++|+.||..+++ ++|++|+||||||+|+++.||.+
T Consensus 684 ~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~ 762 (1080)
T 2dfs_A 684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI 762 (1080)
T ss_dssp TTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCS-SHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred hcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCC-ChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHH
Confidence 999999999999999999999999999999999866554 899999999999865 48999999999999999999999
Q ss_pred hhcccchhHHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhhHH
Q 001214 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 449 (1122)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~ 449 (1122)
|.+.+..+|+.||++||||++|++|.+++.|++.||++|||+++|+.+..+|+..||++||++||||.+|+.|.+++.++
T Consensus 763 R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aa 842 (1080)
T 2dfs_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT 842 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 450 VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAA 529 (1122)
Q Consensus 450 ~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~~~~lk~~a~~~~~L~~~ 529 (1122)
+.||+.|||+.+|+.+..++++.+|+.||++||+|++|+.|.+.+++++.+|+.||++++|+++..++.+++.++++++.
T Consensus 843 i~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~ 922 (1080)
T 2dfs_A 843 IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001214 530 KNKLEKQVEELTWRLQLEKRMRVDMEEAKT-------QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQE 602 (1122)
Q Consensus 530 ~~~LE~kv~el~~~l~~e~~~~~~le~~~~-------~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e 602 (1122)
+.+||+++.+|+++++++++.+.++.+... +|+.+|++++++++....+. .+..+.+..+.+++..
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~----~~~~~~v~~L~~e~~~--- 995 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA----KNATNRVLSLQEEIAK--- 995 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---
Confidence 999999999999999987766666655433 44444544444444422111 1111222222222211
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 603 VPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1122)
Q Consensus 603 ~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~ 660 (1122)
.+++++.+.+++..+++.++.++. ++++++..+++++..+.+++++++..+
T Consensus 996 ----l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 996 ----LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555555555555544442 333444455555555555554444433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=5.2e-111 Score=1103.31 Aligned_cols=417 Identities=37% Similarity=0.669 Sum_probs=386.0
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~ 79 (1122)
|||+++|.++||+|++.+++|.|++++|+++|..+||||||+||++||+|||.+||.+|++. ....+|||||||||||+
T Consensus 391 g~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~ 470 (1184)
T 1i84_S 391 GINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEI 470 (1184)
T ss_dssp TSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCC
T ss_pred CCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCC
Confidence 89999999999999999999999999999999999999999999999999999999999875 45678999999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcC--CcchhhhhHhhhcCCCCC
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKK--PGGIIALLDEACMFPRST 156 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~--~~Gil~lLdee~~~p~~~ 156 (1122)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++|||||+++ |.|||+||||||++|++|
T Consensus 471 f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~t 550 (1184)
T 1i84_S 471 FEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKAT 550 (1184)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCC
Confidence 9999999999999999999999999999999999999999999999 5999999999973 349999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCC--CCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh
Q 001214 157 HETFAQKLYQTFKNHKRFSKPKL--ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1122)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~--~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1122)
|.+|++||+.+|++|++|.+|+. +...|+|+||||+|+|++.||++||+|+++++++.+|+.|+++||+.||+.....
T Consensus 551 d~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~ 630 (1184)
T 1i84_S 551 DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRI 630 (1184)
T ss_dssp HHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTC
T ss_pred hHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhcccccc
Confidence 99999999999999999999986 4689999999999999999999999999999999999999999999999864310
Q ss_pred ------------------ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchh
Q 001214 235 ------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVM 296 (1122)
Q Consensus 235 ------------------~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvl 296 (1122)
..++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++||||+||+
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~Gvl 710 (1184)
T 1i84_S 631 VGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVL 710 (1184)
T ss_dssp CCC---------------------CCCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHH
T ss_pred ccccccccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCch
Confidence 01223568999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhCCCCccChHHHHHHHhhhhhccCCC-CcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhhhcc
Q 001214 297 EAIRISCAGYPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEV 373 (1122)
Q Consensus 297 e~iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~ 373 (1122)
|+|||+++|||+|++|.+|+.||++|.|...+. ..|.+.+|..||..++++ .|++|+||||||+|+++.||.+|..+
T Consensus 711 E~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~ 790 (1184)
T 1i84_S 711 EGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLK 790 (1184)
T ss_dssp HHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHH
T ss_pred HHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHH
Confidence 999999999999999999999999999886553 468899999999998774 79999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcccchhhhchh---hhhHhhhhHhhhhcccccc
Q 001214 374 LGRSASIIQRKVRSYLSRKNYIMLR---RSAIHIQAACRGQLARTVY 417 (1122)
Q Consensus 374 l~~~a~~IQ~~~R~~~~R~~y~~~r---~a~i~iQ~~~Rg~lar~~~ 417 (1122)
+..+++.||++||||++|++|.+++ .|++.||++||+|++++.|
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999874 6888899999999887654
No 3
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=2.7e-108 Score=1018.31 Aligned_cols=416 Identities=41% Similarity=0.702 Sum_probs=377.2
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.|+++++++||..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 388 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 467 (837)
T 1kk8_A 388 GINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 467 (837)
T ss_dssp TSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCCcccc
Confidence 79999999999999999999999999999999999999999999999999999999999976667899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++||||||+ |.|||+||||||++|++||++
T Consensus 468 ~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~t 546 (837)
T 1kk8_A 468 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKS 546 (837)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHH
T ss_pred ccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHH
Confidence 999999999999999999999999999999999999999999999 699999999998 779999999999999999999
Q ss_pred HHHHHHH-HhcCCCCcCCCCCC------CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccch
Q 001214 160 FAQKLYQ-TFKNHKRFSKPKLA------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA 232 (1122)
Q Consensus 160 ~~~kl~~-~~~~~~~~~~p~~~------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~ 232 (1122)
|++||+. ++++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+...
T Consensus 547 f~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~ 626 (837)
T 1kk8_A 547 FQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPE 626 (837)
T ss_dssp HHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC--
T ss_pred HHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccc
Confidence 9999764 56899999999864 6899999999999999999999999999999999999999999999998743
Q ss_pred hh-----ccCC--CCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhC
Q 001214 233 EE-----SSKT--SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1122)
Q Consensus 233 ~~-----~~~~--~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g 305 (1122)
.. ..+. ++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|
T Consensus 627 ~~~g~~~~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~G 706 (837)
T 1kk8_A 627 EPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKG 706 (837)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCC
T ss_pred cccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHh
Confidence 21 1111 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhhccCCC-CcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHHHHH
Q 001214 306 YPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1122)
Q Consensus 306 ~p~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ 382 (1122)
||+|++|.+|+.||++|+|..++. ..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++.||
T Consensus 707 fp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ 786 (837)
T 1kk8_A 707 FPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQ 786 (837)
T ss_dssp SCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999986643 468999999999999875 89999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhch---hhhhHhhhhHhhhhcccccc
Q 001214 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVY 417 (1122)
Q Consensus 383 ~~~R~~~~R~~y~~~---r~a~i~iQ~~~Rg~lar~~~ 417 (1122)
++||||++|++|.++ |.|++.||++||||++|+.|
T Consensus 787 a~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 787 AHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 999999999999998 67888999999998886543
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=3.9e-106 Score=994.32 Aligned_cols=399 Identities=45% Similarity=0.773 Sum_probs=375.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 365 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 444 (795)
T 1w7j_A 365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (795)
T ss_dssp TCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccceEEeeccCccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987767899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~ 160 (1122)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++||||||++ .|||+||||||++|++||++|
T Consensus 445 ~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f 523 (795)
T 1w7j_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW 523 (795)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHH
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHh-cCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcC-Ccccccccccchhh----
Q 001214 161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASK-CSFVSSLFLPLAEE---- 234 (1122)
Q Consensus 161 ~~kl~~~~-~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~-~~~v~~lf~~~~~~---- 234 (1122)
++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++++|++|+ ++||+.||+.....
T Consensus 524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~ 603 (795)
T 1w7j_A 524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603 (795)
T ss_dssp HHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC---------
T ss_pred HHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccHHHHHHHHhccccHHHHHHhcccccccccc
Confidence 99999998 9999999999988999999999999999999999999999999999999999 99999999864210
Q ss_pred -----------------------ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhh
Q 001214 235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR 291 (1122)
Q Consensus 235 -----------------------~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr 291 (1122)
..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++|||
T Consensus 604 ~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr 683 (795)
T 1w7j_A 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR 683 (795)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhh
Confidence 011235689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCC--CCcccccceeeeccccccchhhh
Q 001214 292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR 369 (1122)
Q Consensus 292 ~~gvle~iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~ 369 (1122)
|+||+|+|||+++|||+|++|.+|+.||++|+|...... |.+++|+.||..+++ ++|++|+||||||+|+++.||.+
T Consensus 684 ~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~ 762 (795)
T 1w7j_A 684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI 762 (795)
T ss_dssp HTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCS-CHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred hCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCC-CHHHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHH
Confidence 999999999999999999999999999999999866555 899999999999866 48999999999999999999999
Q ss_pred hhcccchhHHHHHHHhhhcccchhhhchhhhh
Q 001214 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSA 401 (1122)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~R~~y~~~r~a~ 401 (1122)
|++++..+++.||++||||++|++|.++|.|+
T Consensus 763 r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998875
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=9e-105 Score=1002.51 Aligned_cols=427 Identities=35% Similarity=0.575 Sum_probs=385.0
Q ss_pred CCCHHHHHHHHhhceEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~ 75 (1122)
|||+++|.++||+|++. ++||.++++++++||..+||||||+||++||+|||++||.+|+.+ ...++|||||||
T Consensus 380 gv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~-~~~~~IGILDI~ 458 (1052)
T 4anj_A 380 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIA 458 (1052)
T ss_dssp TCCHHHHHHHHHEEC-------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECC
T ss_pred CCCHHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccceEEEEecC
Confidence 79999999999999885 579999999999999999999999999999999999999999875 456899999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~ 155 (1122)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++|.|||+||||||++|++
T Consensus 459 GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~ 538 (1052)
T 4anj_A 459 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 538 (1052)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001214 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1122)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1122)
||++|++||++.|++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+
T Consensus 539 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~ 618 (1052)
T 4anj_A 539 SDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR 618 (1052)
T ss_dssp CHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHH
T ss_pred cHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHH
Confidence 9999999999999999999887643 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhcc------CCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhH
Q 001214 226 SLFLPLAEESS------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAI 299 (1122)
Q Consensus 226 ~lf~~~~~~~~------~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~i 299 (1122)
.||++...... ++.+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 619 ~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~i 698 (1052)
T 4anj_A 619 ELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 698 (1052)
T ss_dssp HTTCC----------------CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHH
T ss_pred HhhhccccccccccCCCCCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHH
Confidence 99987532211 123568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhhhcccchh
Q 001214 300 RISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRS 377 (1122)
Q Consensus 300 ri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~ 377 (1122)
||+++|||+|++|.+|+.||++|+|.... ..|++++|+.||..++++ +|++|+||||||+|+++.||.+|..++..+
T Consensus 699 rI~r~Gyp~R~~f~eF~~RY~~L~~~~~~-~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~ 777 (1052)
T 4anj_A 699 DLMQGGFPSRASFHELYNMYKKYMPDKLA-RLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 777 (1052)
T ss_dssp HHTTTCCCEEEEHHHHHHHHHTTSCSSGG-GSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHhcCCCCcCcHHHHHHHHHHhCccccc-CCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654 358899999999999876 899999999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhh
Q 001214 378 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1122)
Q Consensus 378 a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1122)
++.||+ +|||++|++|.+++.+++.||..+|++..|+ +|.|.|++.|.++++
T Consensus 778 ~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~-----------------~~~~~w~~l~~~v~p 829 (1052)
T 4anj_A 778 AELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRA-----------------EAVSKGEELFTGVVP 829 (1052)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHTTSSCEE
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HcchHHHHHHHhhhh
Confidence 998885 7999999999999999999999888876543 455666666665554
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=5.6e-103 Score=994.98 Aligned_cols=420 Identities=35% Similarity=0.632 Sum_probs=389.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-SKSLIGVLDIYGFES 79 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~ 79 (1122)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|++... ...|||||||||||+
T Consensus 360 gv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~ 439 (995)
T 2ycu_A 360 GLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEI 439 (995)
T ss_dssp TCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCC
T ss_pred CCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999987554 679999999999999
Q ss_pred cCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc--CCcchhhhhHhhhcCCCCC
Q 001214 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK--KPGGIIALLDEACMFPRST 156 (1122)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~--~~~Gil~lLdee~~~p~~~ 156 (1122)
|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++|
T Consensus 440 f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~t 519 (995)
T 2ycu_A 440 FQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKAT 519 (995)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCC
T ss_pred cccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999 699999999998 4889999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCC--CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh
Q 001214 157 HETFAQKLYQTFKNHKRFSKPKLA--RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1122)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~--~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1122)
|++|++||+..|++|++|.+|+.+ ...|+|+||||+|+|++.||++||+|+++++++.+|++|+++||+.||+.....
T Consensus 520 D~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~ 599 (995)
T 2ycu_A 520 DKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGI 599 (995)
T ss_dssp HHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSS
T ss_pred hHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHHhCcHHHHHHHhhccccc
Confidence 999999999999999999999864 589999999999999999999999999999999999999999999999864310
Q ss_pred ----------------ccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhh
Q 001214 235 ----------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1122)
Q Consensus 235 ----------------~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1122)
..++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+
T Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~ 679 (995)
T 2ycu_A 600 VGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEG 679 (995)
T ss_dssp CSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHH
T ss_pred ccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHH
Confidence 0122356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCccChHHHHHHHhhhhhccCCC-CcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhhhcccc
Q 001214 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 375 (1122)
Q Consensus 299 iri~~~g~p~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~ 375 (1122)
|||+++|||+|++|.+|+.||++|+|..++. ..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|++++.
T Consensus 680 iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~ 759 (995)
T 2ycu_A 680 IRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQT 759 (995)
T ss_dssp HHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhh
Confidence 9999999999999999999999999986543 468889999999998774 8999999999999999999999999887
Q ss_pred hh-----HHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccc
Q 001214 376 RS-----ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESM 420 (1122)
Q Consensus 376 ~~-----a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~ 420 (1122)
.+ |..++.|+|+..++..+.+.+.++..||+.+||+.+++...+.
T Consensus 760 ~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp 809 (995)
T 2ycu_A 760 KSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 809 (995)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 65 4557788898888888889999999999999998887665543
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=1.3e-100 Score=970.92 Aligned_cols=419 Identities=39% Similarity=0.673 Sum_probs=380.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|+++. ...+||||||||||+|
T Consensus 383 gv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~-~~~~IgvLDI~GFE~f 461 (1010)
T 1g8x_A 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER-KAYFIGVLDISGFEIF 461 (1010)
T ss_dssp TSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCceeeeccCcccccC
Confidence 799999999999999999999999999999999999999999999999999999999998765 6789999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc-CCcchhhhhHhhhcCCCCChH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK-KPGGIIALLDEACMFPRSTHE 158 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~-~~~Gil~lLdee~~~p~~~d~ 158 (1122)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++||+
T Consensus 462 ~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~ 541 (1010)
T 1g8x_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDN 541 (1010)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHH
T ss_pred CcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChH
Confidence 999999999999999999999999999999999999999999999 599999999998 488999999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh--hc
Q 001214 159 TFAQKLYQTFK-NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--ES 235 (1122)
Q Consensus 159 ~~~~kl~~~~~-~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--~~ 235 (1122)
+|++||+++++ +|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+..+. ..
T Consensus 542 ~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~~~~~~ 621 (1010)
T 1g8x_A 542 TLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRA 621 (1010)
T ss_dssp HHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHHHHSCC
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhcccccccCC
Confidence 99999999999 9999999998888999999999999999999999999999999999999999999999987531 12
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHH
Q 001214 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1122)
Q Consensus 236 ~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F 315 (1122)
.++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++||||+||+|+|||+++|||+|++|.+|
T Consensus 622 ~k~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F 701 (1010)
T 1g8x_A 622 KKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701 (1010)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHH
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHH
Confidence 23345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHHHHHHHhhhcccchh
Q 001214 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKN 393 (1122)
Q Consensus 316 ~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~R~~ 393 (1122)
+.||++|+|....+..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++.||-..|+
T Consensus 702 ~~RY~~L~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~a------ 775 (1010)
T 1g8x_A 702 VKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRA------ 775 (1010)
T ss_dssp HHHHGGGSTTCCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhCCCCCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999982223468999999999999875 7999999999999999999999999999999998843332
Q ss_pred hhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHH
Q 001214 394 YIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMY 436 (1122)
Q Consensus 394 y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~ 436 (1122)
..++.++|+..++...+ ....+...||+.++.+
T Consensus 776 --------~~L~~WIr~kqa~l~~r--~~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 776 --------NELVQWINDKQASLESR--DFGDSIESVQSFMNAH 808 (1010)
T ss_dssp --------HHHHHHHHHHHHHHHCC--CCCSSHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhh--hccccHHHHHHHHHHH
Confidence 23445666555533222 2234667777776655
No 8
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=3.3e-100 Score=929.66 Aligned_cols=373 Identities=38% Similarity=0.654 Sum_probs=334.6
Q ss_pred CCCHHHHHHHHhhceEeeC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTR----DETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYG 76 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~G 76 (1122)
|||+++|.++||+|++.++ +|.++++++++||..+||||||+||++||+|||.+||.+|+++.....+||||||||
T Consensus 310 gv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~G 389 (697)
T 1lkx_A 310 KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYG 389 (697)
T ss_dssp TSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCC
T ss_pred CCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Confidence 7999999999999999999 999999999999999999999999999999999999999987666789999999999
Q ss_pred ccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCC
Q 001214 77 FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1122)
Q Consensus 77 FE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~ 156 (1122)
||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++|.|||+||||||++|++|
T Consensus 390 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t 469 (697)
T 1lkx_A 390 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 469 (697)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC
T ss_pred ccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCC------CCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCccccccccc
Q 001214 157 HETFAQKLYQTFKNHKRFSKPKL------ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1122)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~------~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1122)
|++|++||++++++|++|.+|+. +...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+.
T Consensus 470 D~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~ 549 (697)
T 1lkx_A 470 DQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPP 549 (697)
T ss_dssp HHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-
T ss_pred hHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhccc
Confidence 99999999999999999998652 357999999999999999999999999999999999999999999999987
Q ss_pred chhhccCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCcc
Q 001214 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1122)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~ 310 (1122)
... ..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||+|+
T Consensus 550 ~~~-~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~ 628 (697)
T 1lkx_A 550 TRP-EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRI 628 (697)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCC
T ss_pred ccc-ccccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccc
Confidence 532 2233467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhccCCC-CcchHHHHHHHHhhcCCC--Ccccccceeeeccc-cccchhhhhhccc
Q 001214 311 PFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARRTEVL 374 (1122)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~-~~~~Le~~r~~~l 374 (1122)
+|.+|+.||++|+|..++. ..|.+++|+.||..++++ +|++|+||||||++ .++.||.+|++++
T Consensus 629 ~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 629 EYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp BSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred cHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 9999999999999976542 357899999999999876 89999999999996 7899999998765
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=4.7e-100 Score=931.83 Aligned_cols=377 Identities=42% Similarity=0.742 Sum_probs=315.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.|+++++++||..+||||||+||+|||+|||.+||.+|+++.. ..+||||||||||+|
T Consensus 383 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-~~~IGvLDI~GFE~F 461 (770)
T 1w9i_A 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK-AYFIGVLDIYGFEIF 461 (770)
T ss_dssp TCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC-SEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeeccCcccccc
Confidence 7999999999999999999999999999999999999999999999999999999999987555 889999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc-CCcchhhhhHhhhcCCCCChH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK-KPGGIIALLDEACMFPRSTHE 158 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~-~~~Gil~lLdee~~~p~~~d~ 158 (1122)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++||+
T Consensus 462 ~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~ 541 (770)
T 1w9i_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDN 541 (770)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHH
T ss_pred ccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChH
Confidence 999999999999999999999999999999999999999999999 599999999998 488999999999999999999
Q ss_pred HHHHHHHH-HhcCCCCcCCCCCCCCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh--c
Q 001214 159 TFAQKLYQ-TFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE--S 235 (1122)
Q Consensus 159 ~~~~kl~~-~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~--~ 235 (1122)
+|++||+. ++++|++|.+|+.+...|+|+||||+|+|++.||++||+|+++++++.+|++|+++||+.||+..... .
T Consensus 542 ~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~~~~ 621 (770)
T 1w9i_A 542 TLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRA 621 (770)
T ss_dssp HHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCHHHHCCC
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhccCCCCCC
Confidence 99999765 56899999999988899999999999999999999999999999999999999999999999874321 1
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHH
Q 001214 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1122)
Q Consensus 236 ~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F 315 (1122)
.++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+++|||+|++|.+|
T Consensus 622 ~k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF 701 (770)
T 1w9i_A 622 KKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701 (770)
T ss_dssp EETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHH
Confidence 12334689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCC-CCcchHHHHHHHHhhcCCC--CcccccceeeeccccccchhhhhhcccchhHH
Q 001214 316 VDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1122)
Q Consensus 316 ~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~a~ 379 (1122)
+.||++|+| .++ +..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|++++..+++
T Consensus 702 ~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~~ 767 (770)
T 1w9i_A 702 VKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDYKDD 767 (770)
T ss_dssp -----------------------------------CCCCCSSEEEECTTTTTC--------------
T ss_pred HHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHHHhc
Confidence 999999998 443 2458899999999998775 89999999999999999999999999887654
No 10
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2.4e-100 Score=937.72 Aligned_cols=374 Identities=40% Similarity=0.720 Sum_probs=318.3
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccc
Q 001214 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1122)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||+|||+|||.+||.+|+++....+|||||||||||+|
T Consensus 389 gv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 468 (783)
T 4db1_A 389 GLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIF 468 (783)
T ss_dssp TCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEecccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987667899999999999999
Q ss_pred CCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001214 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1122)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~ 159 (1122)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++||||||+ |.|||+||||||++|++||++
T Consensus 469 ~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~t 547 (783)
T 4db1_A 469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMT 547 (783)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 599999999997 679999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCCCC----CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh
Q 001214 160 FAQKLYQTF-KNHKRFSKPKLA----RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1122)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~~~----~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1122)
|++||+++| ++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+.....
T Consensus 548 f~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~ 627 (783)
T 4db1_A 548 FKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGA 627 (783)
T ss_dssp HHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC--
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccc
Confidence 999999887 899999999864 578999999999999999999999999999999999999999999999864211
Q ss_pred -----c-----cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhh
Q 001214 235 -----S-----SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCA 304 (1122)
Q Consensus 235 -----~-----~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1122)
+ .+.+.++||+++|+.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||+|+|||+++
T Consensus 628 ~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~ 707 (783)
T 4db1_A 628 DAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRK 707 (783)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHT
T ss_pred cccccCccCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhc
Confidence 0 112245899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhhccCCCC--cchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhhhcccc
Q 001214 305 GYPTRKPFDEFVDRFGILASKVLDGS--SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 375 (1122)
Q Consensus 305 g~p~r~~~~~F~~ry~~l~~~~~~~~--~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~ 375 (1122)
|||+|++|.+|+.||++|+|..++.. .|.+++|+.||..++++ +|++|+||||||+|+++.||.+|++++.
T Consensus 708 Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 708 GFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp SCCEEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC-----
T ss_pred CCCccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 99999999999999999999866432 58899999999999875 7999999999999999999999998765
No 11
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=3.9e-99 Score=932.47 Aligned_cols=386 Identities=38% Similarity=0.635 Sum_probs=347.7
Q ss_pred CCCHHHHHHHHhhceEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001214 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1122)
Q Consensus 1 ~~~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~ 75 (1122)
|||+++|.++||+|++. ++|+.++++++++||..+||||||+||++||+|||.+||.+|..+ ....+|||||||
T Consensus 376 gv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~IGvLDI~ 454 (784)
T 2v26_A 376 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIA 454 (784)
T ss_dssp TCCHHHHHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECC
T ss_pred CCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccceeeecccC
Confidence 79999999999999997 679999999999999999999999999999999999999999764 457899999999
Q ss_pred cccccCCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001214 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1122)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~ 155 (1122)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++|.|||+||||||++|++
T Consensus 455 GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~ 534 (784)
T 2v26_A 455 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 534 (784)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred CcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCCeEEEeeccceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001214 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1122)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1122)
||++|++||++++++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+
T Consensus 535 tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~ 614 (784)
T 2v26_A 535 SDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR 614 (784)
T ss_dssp CHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHH
T ss_pred ChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHH
Confidence 9999999999999999999888753 358999999999999999999999999999999999999999999
Q ss_pred cccccchhhc------cCCCCCcchhHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhhhhhccchhhhH
Q 001214 226 SLFLPLAEES------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAI 299 (1122)
Q Consensus 226 ~lf~~~~~~~------~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~i 299 (1122)
.||+.....+ .++.+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|
T Consensus 615 ~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~i 694 (784)
T 2v26_A 615 ELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 694 (784)
T ss_dssp HHC----------------CCCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHH
T ss_pred HHcccccccccCcccCCCCCccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHH
Confidence 9998752111 0122458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccChHHHHHHHhhhhhccCCCCcchHHHHHHHHhhcCCC--Ccccccceeeeccccccchhhhhhcccchh
Q 001214 300 RISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRS 377 (1122)
Q Consensus 300 ri~~~g~p~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~~ 377 (1122)
||+++|||+|++|.+|+.||++|+|.... ..|.+++|+.||..++++ +|++|+||||||+|+++.||+++.......
T Consensus 695 ri~r~Gyp~R~~f~eF~~RY~~L~~~~~~-~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~ 773 (784)
T 2v26_A 695 DLMQGGFPSRASFHELYNMYKKYMPDKLA-RLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 773 (784)
T ss_dssp HHHTSCCSEEEEHHHHHHHHGGGCCHHHH-TSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHHhcCCccccHHHHHHHHhhcCCcccC-CCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHH
Confidence 99999999999999999999999987544 358899999999999875 899999999999999999999876555444
Q ss_pred HHHHHHHhhhcc
Q 001214 378 ASIIQRKVRSYL 389 (1122)
Q Consensus 378 a~~IQ~~~R~~~ 389 (1122)
+. |++.+|+|+
T Consensus 774 ~~-ii~~v~~wl 784 (784)
T 2v26_A 774 AE-LVKRVNHWL 784 (784)
T ss_dssp HH-HHHHHHHHC
T ss_pred HH-HHHHHHhhC
Confidence 43 456777774
No 12
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-59 Score=544.68 Aligned_cols=343 Identities=15% Similarity=0.240 Sum_probs=272.5
Q ss_pred hHHHHhhhhHhhhhcHHHHHHhhh-----hcCCC-----CCCCCchHHHHHHHHh-hhcc-chhhhhHHHHHHHHHHHHh
Q 001214 738 DSKLRRSHIEHQHENVDALINCVA-----KNLGY-----CNGKPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSA 805 (1122)
Q Consensus 738 ~~~~~~~l~e~~~~~~~~l~~~i~-----~~~~~-----~~~~p~~A~il~~c~~-~~~~-~~~~~~~ll~~i~~~i~~~ 805 (1122)
..+..+++. +.....|.+++.+. +.++. ...+++|||+||+|++ ||+. +..+.+.+|++++++|+++
T Consensus 6 ~~~~~~ll~-~~~~~~~ei~~~l~~~~~ip~~~~~~~~~~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~ 84 (419)
T 2f6h_X 6 NEELYRLLE-DTEILNQEITEGLLKGFEVPDAGVAIQLSKRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKV 84 (419)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHTTTTTCCCCCCSTTCCCCHHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh-hhhhccHHHHHHHHHHccCCCCccccCCCCCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 456778873 33344444444443 33442 2245589999999999 9998 8889999999999999999
Q ss_pred hccc--CC-CcchhhHHHhHHHHHHHH--HHhhhhcCCCCCCCCCCCCCccchhhhhhcccCCCCcchhhhhHHhhhHHh
Q 001214 806 IENE--DD-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVR 880 (1122)
Q Consensus 806 i~~~--~d-~~~l~fWLsN~~~Ll~~l--q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1122)
++++ +| ++.++|||||+++||||| +++....+.. +..+. . +. + +.
T Consensus 85 v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~~~------~~~~~-----------~------~~------~-~~ 134 (419)
T 2f6h_X 85 VTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEET------FKNGM-----------T------DE------E-YK 134 (419)
T ss_dssp HHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------C-----------C------HH------H-HH
T ss_pred HHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhccCc------ccccc-----------c------hh------h-HH
Confidence 9876 34 588999999999999999 6665333221 00000 0 11 1 11
Q ss_pred hhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCCCc-cc--C--CCcCCCCCCcccHHHHHH
Q 001214 881 QVEAKYP--ALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSV-LR--S--GRSFGKDSASSHWQSIID 953 (1122)
Q Consensus 881 ~v~~~~~--~~~f~q~l~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~il~ 953 (1122)
+|| +..|+++|.+++.+||++|+++++++|.|++++||+.|.+..+.. .+ + ++.+. .++.++|++|++
T Consensus 135 ----~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~Il~ 209 (419)
T 2f6h_X 135 ----EYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILT 209 (419)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC----------------CCCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccccc-CCCccCHHHHHH
Confidence 222 568999999999999999999999999999999998876654211 10 0 12222 334579999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccccHHHhH
Q 001214 954 SLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELK 1033 (1122)
Q Consensus 954 ~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~ 1033 (1122)
+|++++++|+.|+|||.+++|+|+|+||||||++||+||+|++||||++|+||||||+.||+||+++|+ +.++++|+
T Consensus 210 ~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l---~~a~~~L~ 286 (419)
T 2f6h_X 210 FFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL---TDGTECLQ 286 (419)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHTH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCC---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999993 46889999
Q ss_pred HHHHHHhHhhhcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhhccCCCC---------
Q 001214 1034 HIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDA--------- 1104 (1122)
Q Consensus 1034 ~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l~~~~~~~~~~~--------- 1104 (1122)
||+||++|||++|++..|++++ +++||+|||+||+||+++||||+|| ++||++||++|++++++++++.
T Consensus 287 ~l~Qa~~lLq~~k~~~~d~~~i-~~~C~~Ln~~Ql~~il~~Y~~d~~e-~~v~~~~i~~v~~~~~~~~~~~~~~~~~~~~ 364 (419)
T 2f6h_X 287 HLIQTAKLLQVRKYTIEDIDIL-RGICYSLTPAQLQKLISQYQVADYE-SPIPQEILRYVADIVKKEAALSSSGNDSKGH 364 (419)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHH-HHHTTTSCHHHHHHHHHHCCCCTTS-CCCCHHHHHHHHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHhhCCCchhhHHHH-HHHhhcCCHHHHHHHHHhCCCccCC-CCCCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999999888777776 6999999999999999999999997 6999999999999999876542
Q ss_pred -C-CCcccc--ccCccceeee
Q 001214 1105 -T-SNSFFV--KKKKFIVVIV 1121 (1122)
Q Consensus 1105 -~-~~~ll~--D~~~~~p~~~ 1121 (1122)
. +++|+| |+++.+||++
T Consensus 365 ~~~~~~~ll~~d~~~~~Pf~~ 385 (419)
T 2f6h_X 365 EHSSSIFITPETGPFTDPFSL 385 (419)
T ss_dssp ----CCSCCCCCCCCCCGGGG
T ss_pred ccccccccccCCcccCCCcCC
Confidence 1 267999 6677799975
No 13
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-54 Score=479.60 Aligned_cols=319 Identities=17% Similarity=0.188 Sum_probs=241.7
Q ss_pred HHHHhhhhHh---hhhcHHHHHHhhhhcCCCC-CCCCchHHHHHHHHh-hhcc-chhhhhHHHHHHHHHHHHhhccc--C
Q 001214 739 SKLRRSHIEH---QHENVDALINCVAKNLGYC-NGKPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSAIENE--D 810 (1122)
Q Consensus 739 ~~~~~~l~e~---~~~~~~~l~~~i~~~~~~~-~~~p~~A~il~~c~~-~~~~-~~~~~~~ll~~i~~~i~~~i~~~--~ 810 (1122)
.+..+++.|. ..|..++|++. ++++... .....||||||+|++ +|+. +..++.+||..++++|++++++. +
T Consensus 17 ~el~~ll~d~~~~~~ei~~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~~~ 95 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVTEGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLPKD 95 (386)
T ss_dssp -CHHHHHHCHHHHHHHHHHHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3445555433 35667777777 4444221 245688999999999 5555 77888999999999999999863 4
Q ss_pred C-CcchhhHHHhHHHHHHHH--HHhhhhcCCCCCCCCCCCCCccchhhhhhcccCCCCcchhhhhHHhhhHHhhhhccch
Q 001214 811 D-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYP 887 (1122)
Q Consensus 811 d-~~~l~fWLsN~~~Ll~~l--q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 887 (1122)
| +..++|||||+++|++|+ +++ ....+ + .+++...
T Consensus 96 d~i~~g~FWLsN~~~l~sFv~~~q~----~~~~~---------------------------~------~d~y~~l----- 133 (386)
T 3mmi_A 96 ETMLGGIFWLSNLSRLPAFAANQKT----LYEAN---------------------------G------GDEKDKL----- 133 (386)
T ss_dssp THHHHHHHHHHHHTTHHHHHHHHHT----TC-----------------------------------------CHH-----
T ss_pred cccccchHHHHhHHHHHHHHHHHHH----HHHcc---------------------------C------hhHHHHH-----
Confidence 5 899999999999999974 332 11000 0 0101111
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHH
Q 001214 888 ALLFKQQLAAYVE----KIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLK 963 (1122)
Q Consensus 888 ~~~f~q~l~~~~~----~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~ 963 (1122)
...+++.|.++.. +||++|+++++++|+|++ | ++.+.+ .++.+. +++.++|++|+++|++++++|+
T Consensus 134 l~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~il-P-----~~~~~~---~~k~~~-~~~~~s~~~Il~~L~~~~~~L~ 203 (386)
T 3mmi_A 134 TLIYLNDLENETLKVFDKIYSTWLVKFMKHASAHI-E-----IFDMVL---NEKLFK-NSGDEKFAKLFTFLNEFDAVLC 203 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHT---CGGGSS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-c-----cccccc---cccccC-CCCccCHHHHHHHHHHHHHHHH
Confidence 1245666666666 999999999999999987 3 222111 111122 3456899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccccHHHhHHHHHHHhHhh
Q 001214 964 QNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLV 1043 (1122)
Q Consensus 964 ~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq 1043 (1122)
.|+|||.++.|+|+|+||||||++||+||+|++||||++|+||||||+.||+||++ | .+.++++|+||+||++|||
T Consensus 204 ~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~-~---l~~a~~~L~~L~QA~~LLQ 279 (386)
T 3mmi_A 204 KFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP-R---IEDVRPNLIQIIQAVKILQ 279 (386)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT-T---SSCCGGGGHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh-c---cHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999 6 3667899999999999999
Q ss_pred hcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhhccCCC-CCCCccccccCc
Q 001214 1044 IHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND-ATSNSFFVKKKK 1115 (1122)
Q Consensus 1044 ~~kk~~~~~~~i~~~~c~~Ls~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l~~~~~~~~~~-~~~~~ll~D~~~ 1115 (1122)
++|++..|.+.+ +++||+|||+||+|||++|+||+|.++|||++|+++|++++++++.. +....+|+|.++
T Consensus 280 ~~K~t~~Di~~i-~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~~~~~~~~~i~~~~~~ 351 (386)
T 3mmi_A 280 LKISNLNEFKLL-FDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRENLSLPGKMEIMLSAQF 351 (386)
T ss_dssp CCCCCHHHHHHH-HTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHHHHCSSCCCSSCCCCC
T ss_pred cCCCCHHHHHHH-HHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhcccccCCcchhhhhcccc
Confidence 998776666555 69999999999999999999999934699999999999999876432 233346666543
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.87 E-value=6.2e-21 Score=244.81 Aligned_cols=126 Identities=30% Similarity=0.301 Sum_probs=102.6
Q ss_pred chhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHH
Q 001214 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM--CFSAVCIQTGMRGMAARNELRFR 468 (1122)
Q Consensus 391 R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~--r~a~~~iQs~~Rg~~aR~~~~~~ 468 (1122)
+.+..++..+++.||+.||||++|++|.++| .||+.||++||||.+|+.|..+ ..|++.||+.|||+.+|+.+...
T Consensus 761 ~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r--~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~l 838 (1080)
T 2dfs_A 761 KIRADKLRAACIRIQKTIRGWLMRKKYMRMR--RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCM 838 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHH
Confidence 3334455678899999999999999888776 6889999999999999888755 45888999999999999988776
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhh--hHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001214 469 RQTRASILIQSHCRKYLARLHYMKLK--KAAITTQCAWRGKVARRELRKLKMAA 520 (1122)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~~~~~~~--~a~i~iQ~~~R~~~ark~~~~lk~~a 520 (1122)
+ .+++.||++|||+.+|+.|..++ .+++.||+.||++++|+.+..++.++
T Consensus 839 r--~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aa 890 (1080)
T 2dfs_A 839 R--DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890 (1080)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5 58889999999999999887665 47888999999999998887654433
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.05 E-value=1.8e-09 Score=142.14 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=31.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHH
Q 001214 443 KDMCFSAVCIQTGMRGMAARNELRFRR-QTRASILIQSHCRKYLARLHY 490 (1122)
Q Consensus 443 ~~~r~a~~~iQs~~Rg~~aR~~~~~~~-~~~aa~~IQ~~~R~~~~r~~~ 490 (1122)
..+...++.||+.|||+++|+.|..++ +..|++.||++||+|.+++.|
T Consensus 789 ~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 789 LKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344456666677777777776665544 335666777777777777654
No 16
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.00 E-value=4.6e-11 Score=98.69 Aligned_cols=56 Identities=32% Similarity=0.497 Sum_probs=50.8
Q ss_pred cccchhHHHHHHHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhh
Q 001214 372 EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCL 427 (1122)
Q Consensus 372 ~~l~~~a~~IQ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi 427 (1122)
++++.+|+.||++||||++|+.|.+++.+++.||++|||+++|+.+..++++.||+
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45678999999999999999999999999999999999999999999888887776
No 17
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.88 E-value=2.1e-09 Score=88.70 Aligned_cols=53 Identities=38% Similarity=0.586 Sum_probs=49.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001214 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASI 475 (1122)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~ 475 (1122)
..||++||++||||.+|+.|..++.+++.||+.|||+.+|+.+..++++.||+
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 46899999999999999999999999999999999999999999988877764
No 18
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.1e-09 Score=86.66 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=36.9
Q ss_pred hhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHH
Q 001214 397 LRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAY 442 (1122)
Q Consensus 397 ~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y 442 (1122)
++.+++.||++|||+++|+.+..++++.||++||++||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 4567778888888888888887777777888888888888888876
No 19
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.1e-07 Score=75.06 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001214 446 CFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 490 (1122)
Q Consensus 446 r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~ 490 (1122)
+.+++.||+.+||+++|+.+..++++.||+.||++||||.+|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 445556666666666666665566666777888888888777765
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=98.13 E-value=8.3e-07 Score=74.53 Aligned_cols=47 Identities=36% Similarity=0.399 Sum_probs=39.6
Q ss_pred hhcccchhHHHHHHHhhhcccchhhhch---hhhhHhhhhHhhhhccccc
Q 001214 370 RTEVLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTV 416 (1122)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~R~~y~~~---r~a~i~iQ~~~Rg~lar~~ 416 (1122)
|++++...++.||+.+|||++|+.|.++ +.|+..||+++|+|++++.
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5677788899999999999999999988 7788889999998887443
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.93 E-value=3e-06 Score=70.87 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHhhhcccchhhhch---hhhhHhhhhHhhhhccccc
Q 001214 373 VLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTV 416 (1122)
Q Consensus 373 ~l~~~a~~IQ~~~R~~~~R~~y~~~---r~a~i~iQ~~~Rg~lar~~ 416 (1122)
++....+.||+.+|||++|+.|.++ +.|+..||+++|+|++++.
T Consensus 2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456778889999999999888888 6788888888888887443
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.49 E-value=0.0078 Score=60.66 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEK 582 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~ 582 (1122)
..|+..+..+..+++.+..+
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 23
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.31 E-value=6.3e-05 Score=62.97 Aligned_cols=47 Identities=28% Similarity=0.465 Sum_probs=36.9
Q ss_pred hhhhhHhhhhHhhhhccccccccccccc-hhhhhHHHHHHHHHHHHHH
Q 001214 397 LRRSAIHIQAACRGQLARTVYESMRREA-SCLRIQRDLRMYLAKKAYK 443 (1122)
Q Consensus 397 ~r~a~i~iQ~~~Rg~lar~~~~~~r~~~-AAi~IQ~~~R~~~~rk~y~ 443 (1122)
+...++.+|+.+||+++|+.+.++.... |+.+||+++|+|..++.+.
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 4567888999999999999888876444 5668999999988876644
No 24
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.29 E-value=5.3e-05 Score=63.24 Aligned_cols=47 Identities=30% Similarity=0.432 Sum_probs=36.3
Q ss_pred hhhhhHhhhhHhhhhcccccccccccc-chhhhhHHHHHHHHHHHHHH
Q 001214 397 LRRSAIHIQAACRGQLARTVYESMRRE-ASCLRIQRDLRMYLAKKAYK 443 (1122)
Q Consensus 397 ~r~a~i~iQ~~~Rg~lar~~~~~~r~~-~AAi~IQ~~~R~~~~rk~y~ 443 (1122)
+...++.+|+.+||+++|+.+.++... .|+.+||+++|+|..++.+.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 446678899999999999988887644 35668999999988776543
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.07 E-value=0.089 Score=56.76 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~ 659 (1122)
.....|.+++..++..+..+++.+.++..++++++....+....+...+..
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555555555555555444444444433
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.83 E-value=0.099 Score=73.82 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 511 RELRKLKMAARETGALQAAKNKLEKQVEELT 541 (1122)
Q Consensus 511 k~~~~lk~~a~~~~~L~~~~~~LE~kv~el~ 541 (1122)
.-+.+|..++..++.+++....++.++++.+
T Consensus 1924 ~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~ 1954 (3245)
T 3vkg_A 1924 IGLKKLRDTEAQVKDLQVSLAQKNRELDVKN 1954 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777766655555554443
No 27
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.76 E-value=0.00033 Score=87.59 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=26.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q 001214 424 ASCLRIQRDLRMYLAKKAYKDM---CFSAVCIQTGMRGMAARNE 464 (1122)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~---r~a~~~iQs~~Rg~~aR~~ 464 (1122)
.+|+.||++||||.+|+.|.++ +.|++.||+.||++.+|+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566666666666666666666 4566666777776666654
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.51 E-value=0.36 Score=47.38 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 531 NKLEKQVEELTWRLQ 545 (1122)
Q Consensus 531 ~~LE~kv~el~~~l~ 545 (1122)
..||+++.|+...+.
T Consensus 9 ~~LekQL~E~n~kLk 23 (168)
T 3o0z_A 9 SQLQKQLEEANDLLR 23 (168)
T ss_dssp -CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.97 E-value=1.1 Score=47.99 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA 656 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~ 656 (1122)
.+..+...+..++..+.++...+++++..+.++.....++...+...
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554444444433
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.93 E-value=0.46 Score=67.30 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
.++..+++-+..|..|..+-.+.+..++.+...+
T Consensus 2070 ~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2070 NKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 3344444555566666666666777777666554
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.81 E-value=0.15 Score=62.13 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+.+.++..++++....++.++...++...+..++...+.++.+..+..++.-++.+.++++++..++.+++.+.++
T Consensus 504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666655555555555555555666666666666666666666666666666653
No 32
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.59 E-value=1.9 Score=42.10 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAM 667 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~ 667 (1122)
..+.++..|...+.+.+.+.+..+.....+++....+...+.....+...+..++
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433333333333333
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.48 E-value=1.9 Score=42.41 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 516 LKMAARETGALQAAKNKL 533 (1122)
Q Consensus 516 lk~~a~~~~~L~~~~~~L 533 (1122)
++.+.+...++++...++
T Consensus 22 Lk~EsE~~~rlkK~~tEl 39 (168)
T 3o0z_A 22 LRTESDTAVRLRKSHTEM 39 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444443333
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.27 E-value=1.9 Score=43.45 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001214 522 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQ 601 (1122)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~ 601 (1122)
++...+....++..++.+++..+.+=.....++|+....++..+.+++.+|+..+..+..+...-..+......+.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~---- 86 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS---- 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3344444444455555555555554345556677777788888888888888887777666544444333332221
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1122)
Q Consensus 602 e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~ 660 (1122)
...++.|..++..|....+.+...+.++|.....++.........+++.+.++
T Consensus 87 ------~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl 139 (189)
T 2v71_A 87 ------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139 (189)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 22344445555555555555555554444444444444444444444444433
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.18 E-value=1.4 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.++++.+.....|....+.+++.+..|+.+++.+.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555443
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.14 E-value=2.3 Score=40.41 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~ 648 (1122)
++....|...+..|+..+.++..++++.+....++...+.+
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkk 108 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666655555544443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.07 E-value=0.15 Score=62.01 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
++.+++.++++.++..+..++++++..++++++++.++++.++++++..+..++..|++++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333334444444444444444444444444444444444444433
No 38
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.92 E-value=3 Score=40.64 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1122)
..+..+.+|+..+++++..+.....+...+..+..
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444444444433333
No 39
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.80 E-value=0.23 Score=47.77 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 001214 432 DLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1122)
Q Consensus 432 ~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1122)
-+..|+.+.+|.+...++..+=..-.-. .-+..+++.||+.+|||++|+.|+...
T Consensus 14 kV~~WLi~sRWrK~q~~~lsvIKLknKI--------~yR~~~~i~iQktvR~~L~rkkhkPRi 68 (148)
T 3gn4_A 14 RVNHWLICSRWKKVQWCSLSVIKLKNKI--------KYRAEACIKMQKTIRMWLCKRRHKPRI 68 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3677888888887766654432222111 122347888999999999998886543
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.50 E-value=2.8 Score=38.34 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
.+..|..++..|....+.+...+.++|.....+++.......-+++.+.++...-+...-|+.++.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666655555555566666665555555555555544
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.32 E-value=0.33 Score=46.75 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
..+.-+++..++.|+..++++++++..+..+......+++.+.+++..+++++..|+.++.+|+.++..
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566666666665555655555555666666666666777777777777777666654
No 42
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.54 E-value=0.022 Score=38.22 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=15.6
Q ss_pred cccchhhhhHHHHHHHHHHH
Q 001214 421 RREASCLRIQRDLRMYLAKK 440 (1122)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk 440 (1122)
+++.||++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45568889999999888764
No 43
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.36 E-value=1.1 Score=39.64 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
.++.+..+..+..+++..+...+....+++.+...+..++.++..++.+++..+..|.....+|+..+.++++.+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777777888888888888888777788888888888888888888888877655
No 44
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.30 E-value=0.034 Score=38.49 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred cccchhhhhHHHHHHHHHHHH
Q 001214 421 RREASCLRIQRDLRMYLAKKA 441 (1122)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk~ 441 (1122)
+++.||++||+.||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999988765
No 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.77 E-value=4.1 Score=39.52 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~e-le~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
......+.++.+++.++++|-..|-+ ..+-.+.. ...-..++.++..|++++.+.+..+..++.++..|+.
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a-------r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA-------RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666655432 12222222 2222345666677778888888888888888888876
No 46
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.74 E-value=4.1 Score=36.88 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
++.++.+|..++..++..+..++....+...+++..++.....+.++..|.-+|.-|+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333333333333333333333333444444444444444444444444443
No 47
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=92.69 E-value=0.16 Score=48.83 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=38.6
Q ss_pred HHhhhcccchhhhchhhhhHhhhhHhhhhccccccccccccchhhhhHHHHHHHHHHHHHHHhhh
Q 001214 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1122)
Q Consensus 383 ~~~R~~~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1122)
+.+..|+.|.++.+...++..+=..=...+. |..|+++||+.+|||++|+.|...-.
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI~y--------R~~~~i~iQktvR~~L~rkkhkPRi~ 69 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKIKY--------RAEACIKMQKTIRMWLCKRRHKPRID 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4567788888888877665554433333322 23588999999999999998875433
No 48
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.89 E-value=9.7 Score=36.94 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
++..+.+.+.......++.....+..++.+.+..+..++.++.+|+.-+.
T Consensus 97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 97 DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555566666666666666666554433
No 49
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.23 E-value=0.21 Score=60.18 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 564 KLQSALQEMQLQFKESKEKL 583 (1122)
Q Consensus 564 ~L~~~l~~le~~l~~~~~~l 583 (1122)
+|+.++.+++.+...++..+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.21 E-value=3.4 Score=38.64 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
++..++..+++++.+.++.-.....++.+...+.+.++++- -...+|+.+++.|++|+.-++
T Consensus 42 eldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~-------l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 42 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS-------LARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333444444444444443333 333344444444555544444
No 51
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.18 E-value=6.4 Score=35.57 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 622 e~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
+.++.++..++..++..+............+++..+......+.++..|.-+|.-+
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333444444444444444444444443
No 52
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=91.04 E-value=9.4 Score=35.15 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
++..|.+-+...+.++..|+.++.
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~ 70 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELG 70 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHH
Confidence 333444433333444444433333
No 53
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=90.92 E-value=4.1 Score=37.26 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+..+..|...-+....++.+|+.||+.|.-
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3445556666667777777888888887763
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.84 E-value=2.7 Score=36.84 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++..+..++.++..+++.++..+++...+.++-..........+..+.+-++...-...+|+.++..|++|+.-|++
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555556666666666666555555555544333334444444444444555555556777777777888777653
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.41 E-value=9.1 Score=35.69 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMH 668 (1122)
Q Consensus 657 ~~~~~~l~~~~~ 668 (1122)
+.++..|++++.
T Consensus 89 E~~iesL~eEl~ 100 (119)
T 3ol1_A 89 ERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.36 E-value=3.5 Score=48.49 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 641 ETSKISEERLKQALEA 656 (1122)
Q Consensus 641 e~~~~~~~~~~~l~~~ 656 (1122)
.++++..++...+.++
T Consensus 453 ~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 453 RLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhc
Confidence 3333333333333333
No 57
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.34 E-value=10 Score=34.30 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le 671 (1122)
+..|++.+..++.+++.++..+.+...++.+. .+...+++..+..|.+.+.-++
T Consensus 46 i~sL~kk~~~lE~eld~~ee~L~ea~~kLee~-------ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 46 IVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA-------EENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444443333333333 3333455555566666665554
No 58
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=90.06 E-value=2.8 Score=46.45 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcc-CCCCCccchhHHhhchHHHHHHHhh--
Q 001214 943 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQ-- 1019 (1122)
Q Consensus 943 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~-- 1019 (1122)
.++..+.+++.+|..++.. .-++|+.+..-++-..|.+|+-.+.+-|+.. -+..+-.--.++...|..+|..+.+
T Consensus 216 ~ps~yi~dli~fL~~~f~s--l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~ 293 (325)
T 2a2f_X 216 IASAFITDMISYLKSTFDS--FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEP 293 (325)
T ss_dssp SCCHHHHHHHHHHHHHHHT--TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCS
T ss_pred CccHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456799999999999994 6799999999999999999999999977753 3667777778999999999999987
Q ss_pred -cccccccccHHHhHHHHHHHhHhhhc
Q 001214 1020 -AKEEYAGSSWDELKHIRQAVGFLVIH 1045 (1122)
Q Consensus 1020 -~~~~~~~~a~~~L~~l~Qa~~lLq~~ 1045 (1122)
.| ...+.....|..|+|.++||+..
T Consensus 294 v~~-l~~~~L~~~F~eLrQli~Ll~~~ 319 (325)
T 2a2f_X 294 VPG-LKEGELSKYFLRNRQLLDLLILE 319 (325)
T ss_dssp SSS-CCSSTTGGGGHHHHHHHHHHHCC
T ss_pred CCC-cccchHHHHHHHHHHHHHHHHhh
Confidence 34 23355678999999999999863
No 59
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.82 E-value=2.5 Score=40.62 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+.+.+.++..++++.++...+..++..++.++..+.+++.++++++..|+.++.
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333
No 60
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.75 E-value=3.6 Score=39.52 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 625 l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+..|+.++..++.++..++.+..+..+.++..+.++..|+-+...+++++.++++|+..|-+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444445556666667777777777888888888866644
No 61
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=89.66 E-value=0.3 Score=33.87 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 001214 469 RQTRASILIQSHCRKYLARLHY 490 (1122)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~~~ 490 (1122)
+++.+|++||+.||+|+.++..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999887653
No 62
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=89.55 E-value=0.21 Score=33.53 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=15.9
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 001214 469 RQTRASILIQSHCRKYLARL 488 (1122)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~ 488 (1122)
+++.+|++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999988764
No 63
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.49 E-value=5.2 Score=34.60 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
|+.+.+....+++.++..+.+.+.........+..++.++..++.++...++++......++..
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444555555555556655555555555555443
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.75 E-value=14 Score=33.77 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~ 668 (1122)
..|...+..+...+.+|+..++++|..-........++..++..+-....-|+.++.
T Consensus 45 ~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 45 SQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333344444444444444444444443
No 65
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=88.61 E-value=1.1 Score=32.78 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+++.+.++++....+|++++.-|+.|+..|||
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567777788888899999999999999999987
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.30 E-value=9.1 Score=34.74 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 660 ~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+|+.+++.|..++.+...|++.|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.16 E-value=15 Score=32.58 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001214 570 QEMQLQFKESK 580 (1122)
Q Consensus 570 ~~le~~l~~~~ 580 (1122)
+.++.++..++
T Consensus 8 e~lre~l~~le 18 (97)
T 2eqb_B 8 NQLKEDYNTLK 18 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333443333
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.53 E-value=18 Score=32.58 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLE 671 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le 671 (1122)
...+++..+..|.+.+.-++
T Consensus 80 ~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 80 KATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33455555555666555543
No 69
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.23 E-value=11 Score=32.59 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~ 672 (1122)
+..|..+.+.....++.++..+.+.++.....+.+...+..++..++..+...+..+.....
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444443333
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.17 E-value=12 Score=32.00 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 001214 618 NEKLKTLVSSLE 629 (1122)
Q Consensus 618 ~~kLe~~l~~l~ 629 (1122)
+..|+.++++|+
T Consensus 22 I~lLqmEieELK 33 (81)
T 2jee_A 22 ITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 71
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=84.08 E-value=11 Score=33.66 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~ 675 (1122)
...|-.++..|-=+++-|+..++++++.+.++.++..+..+.++........|+.++..+++.+.
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777888777777777766665555555555555555555544443
No 72
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.17 E-value=25 Score=31.36 Aligned_cols=67 Identities=9% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
+..++++...+..++..++.....++..-.+--++......++.+.+.....++.++.-....+.+|
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555665555555555554444445555554444444444444444444444444433
No 73
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.09 E-value=47 Score=38.20 Aligned_cols=15 Identities=7% Similarity=0.199 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 565 LQSALQEMQLQFKES 579 (1122)
Q Consensus 565 L~~~l~~le~~l~~~ 579 (1122)
+...|++|+.+++++
T Consensus 62 ltkrINELKnqLEdl 76 (562)
T 3ghg_A 62 FTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 74
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.98 E-value=2.9 Score=39.53 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~e-le~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
....+.++.+++.++++|-..+-+ ..+-.+....+. ...+.++..|+.++.+.+..+..++.++..|+
T Consensus 62 R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~-------~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEK-------YAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-------HHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665542 222222222222 23334444455555555555555555554444
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.92 E-value=17 Score=31.99 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
.....++..++.++..+++.+...+....+++.....+.....++..++...+.....|...-..|+..++.+
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555544444444444444444444444444444444433
No 76
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.56 E-value=7.2 Score=37.79 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001214 609 AVVEELTSENE 619 (1122)
Q Consensus 609 ~~~~~L~~e~~ 619 (1122)
+++..|+.+..
T Consensus 52 Er~~~lE~qLk 62 (147)
T 2b9c_A 52 EKMEIQEIQLK 62 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33343433333
No 77
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.38 E-value=6.4 Score=38.16 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 646 ~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+.+...++..++..+...+......+.++..|++++
T Consensus 75 yeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 75 YEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 78
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.67 E-value=9.9 Score=43.62 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 559 TQENAKLQSALQEMQLQFKES 579 (1122)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~~~ 579 (1122)
...+++|+.++++++..-...
T Consensus 63 tkrINELKnqLEdlsKnsKds 83 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDS 83 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhH
Confidence 345566666666664443333
No 79
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.67 E-value=19 Score=33.91 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
...+.++...+..|+.+++.++.....++..+.+++.... ..+.+.+..+..++.++..++..+...-.|..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666665554332 22344455555555555555555444443333
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.54 E-value=31 Score=30.65 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKID 633 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1122)
.....+.++.+++.++++|-..|-
T Consensus 41 ~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 41 LRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666665543
No 81
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=80.38 E-value=1.7 Score=55.56 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001214 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNE 464 (1122)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~ 464 (1122)
..+|+.||+ +|+|.+|++|++++.+++.+|..+|+...|+.
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777775 79999999999999999999999888766554
No 82
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.28 E-value=18 Score=31.58 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~L 677 (1122)
.+..+...++..+++++.+.++.-.....++.+...+.+.+.++--....|+.++..|.++|.=|
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666677666666666667777777777777666666667777777777776544
No 83
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=79.83 E-value=19 Score=30.24 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+..+..++.....++.++.++++|+.
T Consensus 50 ~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 50 QGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444445555555555543
No 84
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.60 E-value=8.6 Score=32.89 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDE 634 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1122)
+++.++..+..|+..+..++..+++
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 85
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.60 E-value=28 Score=30.80 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
-+++-.|+.++..|+.++..++..-. .. ...--...+.++..++..+..+...++-++..+..+...++.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~------~~---~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGK------SR---LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC------CC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666555543210 11 111223345566666666666677777777777777766664
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.53 E-value=36 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~ 649 (1122)
.+..+...|+.+=..+..++.++++..+.+..++..+
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444443444444444444444444433333
No 87
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=78.52 E-value=46 Score=33.21 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccC
Q 001214 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 692 (1122)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~~~~ 692 (1122)
....+.++..++.++.+-|.++...+..+..+..++-..+.++..|+.++..++.++...+..+..++-.-++.+
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s 153 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSS
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 455667777777777777777777777888888888888999999999999999999999999999998766553
No 88
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.35 E-value=28 Score=33.48 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~ 668 (1122)
+..|+.+...++..+.+++..+.+-.+.++.+..+...+.-++..++.++..++++..
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333334443333333333333444444444333
No 89
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.97 E-value=18 Score=34.20 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 533 LEKQVEELTWRLQLEKRMR 551 (1122)
Q Consensus 533 LE~kv~el~~~l~~e~~~~ 551 (1122)
.+.++..|...+..|+..|
T Consensus 44 ~~~e~~~L~~~l~eE~~~R 62 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELR 62 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444433
No 90
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.64 E-value=33 Score=39.87 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+++.+++.++..++.++++++.+.+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444
No 91
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=77.56 E-value=0.55 Score=60.22 Aligned_cols=19 Identities=11% Similarity=-0.174 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001214 473 ASILIQSHCRKYLARLHYM 491 (1122)
Q Consensus 473 aa~~IQ~~~R~~~~r~~~~ 491 (1122)
++..||+.||++..++...
T Consensus 789 sl~~IQ~~ir~f~~fr~~e 807 (995)
T 2ycu_A 789 SIESVQSFMNAHKEYKKTE 807 (995)
T ss_dssp HHHHHHHHHHHHTTHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4556666666665554443
No 92
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=77.37 E-value=20 Score=43.56 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=79.9
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhccccc
Q 001214 945 SSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEY 1024 (1122)
Q Consensus 945 ~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~ 1024 (1122)
++.....+..|...+..|...-+++.+...++.++..=|+..+|+.+++ ++-+|..-|.|+.+=+..|-.=+. .+
T Consensus 562 SaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-~nkFS~~Ga~Qf~~D~~~L~~v~~----lp 636 (706)
T 3fhn_A 562 SAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK-LNKFNQNGLNQFLHDFKSLSSILS----LP 636 (706)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT-TSCBCHHHHHHHHHHHHHHHTTSC----CC
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCHHHHHHHHHHHHHHHHHhc----CC
Confidence 4457889999999999999988999999999999999999999999999 456777888888888777533222 23
Q ss_pred ccccHHHhHHHHHHHhHhhhcc
Q 001214 1025 AGSSWDELKHIRQAVGFLVIHQ 1046 (1122)
Q Consensus 1025 ~~~a~~~L~~l~Qa~~lLq~~k 1046 (1122)
.+.+...+..|.+++.||-++.
T Consensus 637 ~~~~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 637 SHATNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp TTCCCHHHHHHHHHHHHHGGGG
T ss_pred CcchhhHHHHHHHHHHHcCCCC
Confidence 3444468999999999999974
No 93
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=76.63 E-value=26 Score=29.81 Aligned_cols=57 Identities=9% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001214 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 620 kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~ 676 (1122)
++++.+...+.+++.+.....++.....++...+..++.....+++.+.-++++..+
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333333333444444444333333
No 94
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.23 E-value=15 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
-...+..++..++.++.+|+.|+..||.
T Consensus 35 VN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 35 VNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3345666777777777777777777764
No 95
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=76.19 E-value=20 Score=30.55 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++++...+....+|..++..+++++..|+.
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444445555555555566655554
No 96
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.13 E-value=30 Score=31.18 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.....++..++.++.++..++.++..++.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666666666655554
No 97
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=75.82 E-value=33 Score=28.75 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDE 634 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1122)
+++.++.++..|+..+..++..+++
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444445555555555555544443
No 98
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.63 E-value=18 Score=30.89 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 636 EKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 636 e~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+.+..+++.....+...+++.+.+-..++.+++.+-+.+.-.=.|+..+++.
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333334444444555555555555555555555444555555553
No 99
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.54 E-value=22 Score=33.71 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+.++...+..|+.+++.++.....++..+.+++.... ..+.+.+..+..++.++..++..+...-.|.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555444322 2233444445555555555555444443333
No 100
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.35 E-value=25 Score=32.11 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+.++..++.++..+++++..++.++..++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544
No 101
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.77 E-value=19 Score=29.08 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..+.+++.++..++.+...|..++..|++|+..|++..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777788888888888888888888888888743
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=74.28 E-value=44 Score=30.53 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..++..++.++.++..++.++..++.
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 103
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=74.05 E-value=35 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 642 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
+.......+.++.+.+.+...|..+++.++.++.+|+.+
T Consensus 36 vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333344444555566666666666666666666665543
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.77 E-value=35 Score=31.23 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 647 ~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+..+++..+..+..+++++..++.++.+++..+...-+
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555566777777777777777777777777766543
No 105
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.03 E-value=34 Score=29.12 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 642 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
++.+...-..++....+.+..|+..+..-+.++..|+++
T Consensus 38 lEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 38 LENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333334344444444444444444444444433
No 106
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=72.94 E-value=36 Score=28.54 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+++.+..+++.....+...+++.+.+-..++.+++.+-+.+.-.=.|+..+++.
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~ 64 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDN 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333334444444444445555555555555555555554444555555553
No 107
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.80 E-value=18 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1122)
.+..+.++++.|+.+.+.|+++++.+|-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 108
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=71.71 E-value=1.4e+02 Score=34.15 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001214 567 SALQEMQLQFKESKEKLM 584 (1122)
Q Consensus 567 ~~l~~le~~l~~~~~~l~ 584 (1122)
+-+..++.+++.++..+.
T Consensus 349 ~~~~~~~~~~~~~n~~~~ 366 (551)
T 2b5u_A 349 QVYNSRKSELDAANKTLA 366 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhhhhHHH
Confidence 344555555655555543
No 109
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.95 E-value=62 Score=29.44 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+++.+++.++..|..++.+..+++++|+.+++.+...
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 3466777777788888888888888888888877653
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.90 E-value=12 Score=31.25 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+..++.++..+.+.++.|.+|+.++..++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555555666666666665554
No 111
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.50 E-value=1.1e+02 Score=35.20 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
...+..|+..++.+..+|.+|+..+..+..
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777765544
No 112
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.50 E-value=18 Score=31.75 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 664 KTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 664 ~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
...+.+|+.++.+|..||..|.++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666554
No 113
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.04 E-value=61 Score=35.80 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001214 564 KLQSALQEMQLQFKESK 580 (1122)
Q Consensus 564 ~L~~~l~~le~~l~~~~ 580 (1122)
.++.++++|...+....
T Consensus 64 ~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQ 80 (390)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44455555555555443
No 114
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=69.91 E-value=62 Score=36.68 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCC---ccchhHHhhchHHHHHHHhhcccc
Q 001214 947 HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCT---FSNGEYVKAGLAELELWCCQAKEE 1023 (1122)
Q Consensus 947 ~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs---~s~G~qIr~nls~Le~W~~~~~~~ 1023 (1122)
.++.|+..+..++.-++ .+++|.+..-++..+...+-..-++.|+. +.-|. -.-|.+|+-.+..|.+-+.+.+ .
T Consensus 219 ~v~~i~~ti~dy~~d~~-~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~-~ 295 (399)
T 2fji_1 219 QAQQIADTLDEYLLDIK-PQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVL-D 295 (399)
T ss_dssp HHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 68899999999998775 56999999999999999999999999997 55555 5568899999999999998865 1
Q ss_pred cccc----cHHHhHHHHHHHhHhhhcccccCCHH-HHHhccCcCCCHHHHHHHHh
Q 001214 1024 YAGS----SWDELKHIRQAVGFLVIHQKYRISYD-EITNDLCPILSVQQLYRICT 1073 (1122)
Q Consensus 1024 ~~~~----a~~~L~~l~Qa~~lLq~~kk~~~~~~-~i~~~~c~~Ls~~Qi~~il~ 1073 (1122)
..+. +...+..|.+.+. |-+++-+..-.. .......|-+++..+.+||.
T Consensus 296 ~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~ 349 (399)
T 2fji_1 296 GNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILK 349 (399)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1121 5677888888888 876520222111 22256799999999999995
No 115
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=69.73 E-value=53 Score=28.21 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
+..+..-++...-|+-++.+...|..
T Consensus 73 E~RLsKtEKDkAiLELkLaE~~Dek~ 98 (101)
T 1d7m_A 73 EARLAKTEKDRAILELKLAEAIDEKS 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhh
Confidence 33333334444444444444444433
No 116
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=69.40 E-value=11 Score=32.33 Aligned_cols=9 Identities=11% Similarity=-0.178 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 001214 676 DMETENQIL 684 (1122)
Q Consensus 676 ~Le~e~~~l 684 (1122)
.|+.++..|
T Consensus 46 ~L~~ql~~L 54 (78)
T 3efg_A 46 RNAELIRHL 54 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 117
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=69.05 E-value=62 Score=28.99 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
.+..+..+..+++++..++.++.+++..+
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555443
No 118
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=68.58 E-value=41 Score=27.63 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=8.6
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 001214 668 HRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 668 ~~le~~i~~Le~e~~~l~q 686 (1122)
+.|.+++-.+.-|+..|++
T Consensus 49 ErLNDEiislNIENNlL~~ 67 (75)
T 3a7o_A 49 ERLNDELISGTIENNVLQQ 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHHHHHH
Confidence 3344444444444444444
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.99 E-value=25 Score=31.49 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 627 SLEKKIDETEKKFEETSKISEERL 650 (1122)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~~~ 650 (1122)
.+++++++++....++.+++..+.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 120
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.62 E-value=40 Score=28.28 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHhH
Q 001214 662 QLKTAMHRLEEKVSDM 677 (1122)
Q Consensus 662 ~l~~~~~~le~~i~~L 677 (1122)
.++.++..++....++
T Consensus 48 ~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 48 VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 121
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=67.27 E-value=64 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
-++.+++|+++|..|..++....
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665544
No 122
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=66.22 E-value=78 Score=29.66 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
+..+++.++..+..+++.+..+++++..+.+++..+.++
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455566666666777777777777777777666554
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.84 E-value=93 Score=35.94 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEK 582 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~ 582 (1122)
..|++++.+.+..+..++.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 34555555555555555444
No 124
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.64 E-value=30 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
...+++.++..|+.+..+|+.+|..|+.|+..|++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777777777765
No 125
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.32 E-value=77 Score=28.71 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~ 682 (1122)
.++...+..+..+..++..++.++..++.++.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554
No 126
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=62.06 E-value=5.8 Score=41.56 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 646 ~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..++..++..+..++..|..++++++.++..|++|++.|++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455556677777777888889999999999999999987
No 127
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.04 E-value=22 Score=29.67 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001214 665 TAMHRLEEK 673 (1122)
Q Consensus 665 ~~~~~le~~ 673 (1122)
.++.+|+.+
T Consensus 54 ~eI~~Lqse 62 (72)
T 3nmd_A 54 ELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 128
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=61.96 E-value=1.7e+02 Score=33.52 Aligned_cols=34 Identities=6% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++.-++...+.+.+++.-++...+.+.++..++.
T Consensus 75 lakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 75 LAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444555666666666666666666665554
No 129
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.94 E-value=51 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.+++.++..|+.+...|..+|..|+.|+..|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777777777765
No 130
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.89 E-value=72 Score=27.13 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES 658 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~ 658 (1122)
.|-.|+..|+-.+++++.+-.+-|+++.....+...+...++..+.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 3444444455555555544444444444444444444444433333
No 131
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.73 E-value=77 Score=27.88 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
-.++..|+.++..|..+...|..|++.-+++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567778888888888888999999888875
No 132
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.67 E-value=97 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1122)
.++.|.......++.+.+.+..+++++.++..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 133
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=60.63 E-value=1e+02 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001214 560 QENAKLQSALQEMQLQFKESKE 581 (1122)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~ 581 (1122)
.|+..|..++.-++..++++..
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444444433
No 134
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.28 E-value=60 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~ 640 (1122)
..+.+|++|+...|.+|...+.++.+.++..+
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777777776665543
No 135
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=59.89 E-value=50 Score=28.56 Aligned_cols=33 Identities=3% Similarity=0.158 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.++...+..++.++..|+..++++.-+++.+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544
No 136
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=59.03 E-value=6.9 Score=48.66 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 001214 470 QTRASILIQSHCRKYLARLHYMKLKKAA 497 (1122)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~ 497 (1122)
...+++.||++||||++|++|+++++++
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777777777777766543
No 137
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.94 E-value=48 Score=28.28 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..+.+..+..|+.+...|+.+|..|+.|+..|++-.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888999999999999999988643
No 138
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.39 E-value=97 Score=28.71 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
.+..|..++..|+.+++.+.. +.......+..++..++..+..-...........+.|+.+++.++..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~----------E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKT----------ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444432 22333333344444444444444444444445555666666666543
No 139
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=57.62 E-value=85 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 001214 664 KTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 664 ~~~~~~le~~i~~Le~e~~~ 683 (1122)
+..+..++++|.+|+..+..
T Consensus 81 ~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 140
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=57.00 E-value=4 Score=40.34 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=19.3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHH
Q 001214 421 RREASCLRIQRDLRMYLAKKAYKD 444 (1122)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk~y~~ 444 (1122)
++..||++||++||.|+.|+.+.+
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 455699999999999988876654
No 141
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.63 E-value=1.6e+02 Score=33.29 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+..|+..+..++.+|..|+..+..+..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555544
No 142
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.40 E-value=2.6e+02 Score=31.64 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~ 683 (1122)
.+..|+..++.+..+|++||..+..
T Consensus 133 ~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555543
No 143
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.32 E-value=24 Score=29.53 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+++.....+..+...|...+..|..|+..+
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333445555556666666666666543
No 144
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.11 E-value=30 Score=29.55 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001214 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1122)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~ 676 (1122)
+.++|.+++-.+...+++...+..-+..+..++.++..|.+++.+
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444433
No 145
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=55.83 E-value=32 Score=27.92 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+.+++.++..|+.+...|..++..|+.|+..|++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777665
No 146
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=54.88 E-value=61 Score=28.24 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~~ 690 (1122)
.+.+..+..|+.+...|+.+|..|+.|+..|++-...
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888999999999999988875443
No 147
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.11 E-value=2.2e+02 Score=32.22 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=8.2
Q ss_pred chhhHHHhHHHHHHHH
Q 001214 814 HMAYWLSNTSTLLFLL 829 (1122)
Q Consensus 814 ~l~fWLsN~~~Ll~~l 829 (1122)
..-|||.| +-+|.|
T Consensus 223 ~gEfWLGl--e~ih~L 236 (409)
T 1m1j_C 223 TTEFWLGN--EKIHLI 236 (409)
T ss_dssp CCCEECCH--HHHHHH
T ss_pred CccEEeec--cceeec
Confidence 46788776 334544
No 148
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=53.01 E-value=87 Score=29.90 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001214 893 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 972 (1122)
Q Consensus 893 q~l~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 972 (1122)
+.....+..||..|+..+..++...+.. .... .+.+++.++.|.+.+..++.+|. -.+||.-+
T Consensus 15 rdy~eH~~eI~~KLv~Im~~r~~~~l~~------Wd~k----------~pvpS~~m~tl~Ke~~kLH~~Ls-~~LP~~~v 77 (141)
T 3n1e_A 15 KDYHDHIAEISAKLVAIMDSLFDKLLSK------YEVK----------APVPSPCFRNICKQMTKMHEAIF-DLLPEEQT 77 (141)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT------CCCC----------SSSSCHHHHHHHHHHHHHHHHHT-TTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccC----------CCCCCHHHHHHHHHHHHHHHHHH-hhCCHHHH
Confidence 3445669999999999888888766541 1110 02345689999999999999997 46899999
Q ss_pred HHHHHHHHHhHHHHH
Q 001214 973 QKIFTQTFSYINVQL 987 (1122)
Q Consensus 973 ~Q~f~qlf~~ina~l 987 (1122)
..+|..+|.-.+-.+
T Consensus 78 ~~Im~~Vf~~fk~~l 92 (141)
T 3n1e_A 78 QMLFLRINASYKLHL 92 (141)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987655443
No 149
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.56 E-value=2.9e+02 Score=31.72 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 648 ~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
+-.+.+.+-+.++...+.++...+..+.+++
T Consensus 77 kY~~~~AeY~~kl~aYe~~~~~~~k~lae~e 107 (497)
T 3iox_A 77 KYQKDLADYPVKLKAYEDEQTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555566655555544444433
No 150
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.60 E-value=1.3e+02 Score=26.76 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1122)
++|+..+.+++.++++..... +-..++...-.+...+-+... .+.++.+....+.+|+.++..++.-+.+++
T Consensus 18 kkL~~Ki~el~~ei~ke~~~r-egl~Km~~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQR-EALKKMKDVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555544331 222333333333333322111 244555666666666666655555555554
No 151
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=51.58 E-value=93 Score=27.82 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 669 (1122)
..+.=+++.|+..++++++.+.++..+..+..++...+......++..+..++.++.+
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666655555555555555555555555555555543
No 152
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=51.34 E-value=3.3e+02 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
....+..|+..+..++..+..|+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 153
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.53 E-value=20 Score=40.84 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHHHH
Q 001214 673 KVSDMETENQILRQ 686 (1122)
Q Consensus 673 ~i~~Le~e~~~l~q 686 (1122)
...+|..++..++.
T Consensus 46 ~rr~l~n~~~elkg 59 (403)
T 4etp_A 46 VRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCC
Confidence 33344444444443
No 154
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.50 E-value=63 Score=25.14 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 656 AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 656 ~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+.++...|...+++..++|..|.++++.+
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444555555555555555443
No 155
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.40 E-value=1.6e+02 Score=27.50 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001214 563 AKLQSALQEMQLQF 576 (1122)
Q Consensus 563 ~~L~~~l~~le~~l 576 (1122)
.++...+..|+.++
T Consensus 41 ~elrr~iq~L~~el 54 (131)
T 3tnu_A 41 SELRRTMQNLEIEL 54 (131)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 156
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.28 E-value=74 Score=29.51 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001214 562 NAKLQSALQEMQLQFKE 578 (1122)
Q Consensus 562 ~~~L~~~l~~le~~l~~ 578 (1122)
+..|+.++..|+.+++.
T Consensus 42 v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 42 VLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 157
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.71 E-value=19 Score=41.09 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 619 EKLKTLVSSLEKKIDETEKKFEET 642 (1122)
Q Consensus 619 ~kLe~~l~~l~~~l~ele~~~~e~ 642 (1122)
..|+.++.++++++++++.+.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 158
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=49.40 E-value=1.5e+02 Score=26.81 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 001214 616 SENEKLKTLVSS 627 (1122)
Q Consensus 616 ~e~~kLe~~l~~ 627 (1122)
..+..|+..+..
T Consensus 29 ~~k~eL~~~~~~ 40 (107)
T 2no2_A 29 REKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 159
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.06 E-value=1.2e+02 Score=26.05 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEK 673 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~ 673 (1122)
.+..++.++..++..
T Consensus 34 ~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 160
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.94 E-value=1.7e+02 Score=27.28 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001214 562 NAKLQSALQEMQLQFKESKEKL 583 (1122)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l 583 (1122)
...++..+..++.++..+..++
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444555555555444443
No 161
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.35 E-value=99 Score=24.54 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETE 680 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e 680 (1122)
...+..+.+++....+.|.+++.+
T Consensus 32 k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 162
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=47.49 E-value=2.1e+02 Score=27.87 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001214 623 TLVSSLE 629 (1122)
Q Consensus 623 ~~l~~l~ 629 (1122)
+.+.+..
T Consensus 92 qkVaeq~ 98 (169)
T 3k29_A 92 EKVNKQK 98 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 163
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.43 E-value=1.5e+02 Score=25.75 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1122)
.+++..+..+...++..++.+..+-.+|+.
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666655543
No 164
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=45.38 E-value=19 Score=35.60 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Q 001214 469 RQTRASILIQSHCRKYLARLHYMK 492 (1122)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1122)
++..||..||++||.|+.|+.+..
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 455688888888888887766543
No 165
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.28 E-value=77 Score=37.07 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.2
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 001214 1065 VQQLYRICTLYWDDNYNTRSVSPNVISSM 1093 (1122)
Q Consensus 1065 ~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l 1093 (1122)
+.=|..||.+|..++..- .||+.+--+|
T Consensus 441 ~R~l~alLEn~q~~dG~i-~iP~~L~Py~ 468 (501)
T 1wle_A 441 PRLLIALLESYQQKDGSV-LVPPALQPYL 468 (501)
T ss_dssp HHHHHHHHHHHBCTTSCE-ECCGGGHHHH
T ss_pred HHHHHHHHHhCCCCCCCE-eCChhhcCcc
Confidence 567999999999887753 7999888887
No 166
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.21 E-value=1.1e+02 Score=27.33 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-----ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~-----l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.+.+|+..+++++.+++......+-+.+......+. ....+.++.+...++..|+.++.+++.-+..+.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666665555555444444433322111 111234444455555555555555555555444
No 167
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=44.99 E-value=3e+02 Score=29.04 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccc
Q 001214 948 WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGS 1027 (1122)
Q Consensus 948 ~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~ 1027 (1122)
+...+.-++.++.-.+.. +.|.....+++-+..++...+=..++. .-++--=|+|+--=++.|-.++.+.+ ...
T Consensus 127 ~~~F~~~w~~ll~p~k~~-Lt~~~y~~Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~---~~~ 200 (263)
T 3hr0_A 127 VQQFILNLEQQMAEFKAS-LSPVIYDSLTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVT---TWT 200 (263)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTS---CTT
T ss_pred HHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHh--CCcCchhHHHHHHHHHHHHHHHHhcc---chh
Confidence 445555555555555442 235555555555555555555554443 33666678888888999988887744 356
Q ss_pred cHHHhHHHHHHHhHhhhcccccCCHHHH----HhccCcCCCHHHHHHHHhc
Q 001214 1028 SWDELKHIRQAVGFLVIHQKYRISYDEI----TNDLCPILSVQQLYRICTL 1074 (1122)
Q Consensus 1028 a~~~L~~l~Qa~~lLq~~kk~~~~~~~i----~~~~c~~Ls~~Qi~~il~~ 1074 (1122)
.++.+..+.|.+-+|-+.. ..++.+. ...+-|.|||..+.+++..
T Consensus 201 lRekF~RL~QI~~lLnle~--~eev~d~~~~~~~~~~W~Ls~~E~r~il~l 249 (263)
T 3hr0_A 201 IRDKFARLSQMATILNLER--VTEILDYWGPNSGPLTWRLTPAEVRQVLAL 249 (263)
T ss_dssp HHHHTHHHHHHHHHHTCSS--GGGGGGTSGGGGTTCCCCSCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCC--hHHHHHHhcccCCCccccCCHHHHHHHHHh
Confidence 8899999999999998862 2222121 1235689999999999975
No 168
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.63 E-value=1.2e+02 Score=24.12 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEK 673 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~ 673 (1122)
...+.+.....++..++.+
T Consensus 37 ~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 37 EIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444333
No 169
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=43.99 E-value=62 Score=30.73 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..++.++..++..+..|+.++..+..
T Consensus 83 k~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 83 GNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444445555555555544
No 170
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.67 E-value=55 Score=38.02 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+++-.|..+...+..++++|+.+..++.+++.++.+..+ ...++.++...+.++++.+++++.++++++..+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~----~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE----DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665555555544332111 122334445556666666666666666666543
No 171
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=41.97 E-value=1.6e+02 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1122)
+.+|+.++...|.+|...+.++.+.++..
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666655555443
No 172
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.91 E-value=1.7e+02 Score=25.21 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 646 ~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.-++..+++.++..+..|...++++.-++..+++....+-.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666665554443
No 173
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.32 E-value=1.1e+02 Score=26.61 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 617 ENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~ 637 (1122)
+...|+..++.|+.++.+++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 174
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=41.15 E-value=1.6e+02 Score=28.18 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 648 ~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
-+..+++.++..+..+++.+..+++++..++..+..+.++
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666777777777777777777777776653
No 175
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.10 E-value=2.6e+02 Score=28.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDE 634 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~e 634 (1122)
..|..++..++.....+.+++++
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 176
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.44 E-value=1.4e+02 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001214 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 648 ~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~ 679 (1122)
++..++..++.....|..++..|++++..|+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555543
No 177
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.40 E-value=54 Score=37.94 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
+++-.|..+...+..++++|+.+..++.+++.++.+... ....+.++...+.++++.+++++.++++++..+-
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE----PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666665555555544322111 1223334445566666666666666666655433
No 178
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.73 E-value=83 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++-....+|.+.+..++++|..|+++|..|+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666666666666666666554
No 179
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.66 E-value=1e+02 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 655 ~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
++-....+|...+..+++++..++++++.|+.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666666654
No 180
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=39.33 E-value=1.4e+02 Score=35.63 Aligned_cols=10 Identities=30% Similarity=0.139 Sum_probs=4.5
Q ss_pred Eeccchhhhc
Q 001214 195 YQTELFLDKN 204 (1122)
Q Consensus 195 Y~~~~fl~kN 204 (1122)
.|+.|+.+..
T Consensus 96 iDTpGi~~~~ 105 (592)
T 1f5n_A 96 LDTEGLGDVE 105 (592)
T ss_dssp EEECCBCCGG
T ss_pred ecCCCcCccc
Confidence 3444544433
No 181
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.32 E-value=63 Score=36.70 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 001214 949 QSIIDSLNTLLSTL 962 (1122)
Q Consensus 949 ~~il~~L~~~~~~l 962 (1122)
+.-|..|..+...|
T Consensus 324 NkSL~aLg~vI~aL 337 (403)
T 4etp_A 324 NKSLSALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 182
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=39.30 E-value=88 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.+|..++..-+++|..|++||..|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4456666666677777777777665
No 183
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=39.03 E-value=1.8e+02 Score=24.67 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 001214 664 KTAMHRLEEKVSDMETENQI 683 (1122)
Q Consensus 664 ~~~~~~le~~i~~Le~e~~~ 683 (1122)
+..+..++++|.+|+..+..
T Consensus 51 ~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444443
No 184
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=38.37 E-value=2e+02 Score=25.32 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1122)
+.+|+.++...|.+|...+.++.+.++..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666555444
No 185
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=38.27 E-value=21 Score=29.56 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
+++-|.+++.+|.+++..|+.||..||+-+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345688899999999999999999999843
No 186
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=37.47 E-value=2.3e+02 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~ 640 (1122)
.+.+|++++...|.+|...+.++.+.++..+
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e 53 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYE 53 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777777777777777777766665443
No 187
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.37 E-value=1.2e+02 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhHHHH
Q 001214 665 TAMHRLEEKVSDMETE 680 (1122)
Q Consensus 665 ~~~~~le~~i~~Le~e 680 (1122)
+-+..|+++|.+|+.|
T Consensus 31 kiianlrdeiarlene 46 (52)
T 3he5_B 31 KIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.22 E-value=1.4e+02 Score=34.72 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 001214 1065 VQQLYRICTLYWDDNYNTRSVSPNVISSM 1093 (1122)
Q Consensus 1065 ~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l 1093 (1122)
+.=|..||.+|+.++. - .||+.+--+|
T Consensus 435 ~R~l~AiLEn~q~~dG-i-~iP~~L~pym 461 (484)
T 3lss_A 435 TRTMCCICENYQTEEG-V-VIPDVLRPYM 461 (484)
T ss_dssp HHHHHHHHHHHBCSSE-E-ECCGGGGGGT
T ss_pred HHHHHHHHHhcCCCCC-e-eCChhhcCcc
Confidence 6678899999998765 3 7887765555
No 189
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.53 E-value=1.6e+02 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
+...++++.+|-+-...+.+++..++.++..|+.++
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 334444445555555555555555555555555443
No 190
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.14 E-value=96 Score=30.86 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEK 637 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1122)
.++.|..|+..|.++++....+++.+.+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444433333333
No 191
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.57 E-value=4.9e+02 Score=28.76 Aligned_cols=15 Identities=13% Similarity=0.218 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001214 531 NKLEKQVEELTWRLQ 545 (1122)
Q Consensus 531 ~~LE~kv~el~~~l~ 545 (1122)
..++.+|++|+.+|.
T Consensus 63 r~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 63 QDFTSRINKLRDSLF 77 (390)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444555544444
No 192
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.97 E-value=87 Score=24.45 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.+.++..+..|++++.+|++++..-+++...+.+
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344566677777777777777766665555555444
No 193
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.92 E-value=49 Score=25.98 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 609 AVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1122)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1122)
..++.|..|++.|+..++.|.++++++..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444443
No 194
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.86 E-value=1.5e+02 Score=25.55 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhHHH
Q 001214 666 AMHRLEEKVSDMET 679 (1122)
Q Consensus 666 ~~~~le~~i~~Le~ 679 (1122)
++++++++|.+.+.
T Consensus 59 ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 59 EIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 195
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.67 E-value=49 Score=22.17 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 614 LTSENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele 636 (1122)
|+.+..+|..-+++|+++++.+|
T Consensus 4 lee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 196
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.57 E-value=2e+02 Score=24.94 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+..++..++.+...|..++..|+.++..|..-+..+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444455555555555555555555555444433
No 197
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.49 E-value=86 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.++..|+..++.++.+|.+|+..+..++.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554
No 198
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.94 E-value=3e+02 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=20.9
Q ss_pred CeeeeecCCCCCCCCCcccchhhhhhhhccchhhhHHHHhhCCCCccChHHHHH
Q 001214 264 PHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1122)
Q Consensus 264 ~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g~p~r~~~~~F~~ 317 (1122)
..||+|--.+ ..|..|+-..--...-+.|.+..-.|...-=+..+++++|+.
T Consensus 17 ~~~l~~~w~~--~~~~~f~l~~TdG~~~w~g~v~~~~i~~rAk~~~~~~eey~~ 68 (213)
T 1ik9_A 17 THFLQVSWEK--TLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVG 68 (213)
T ss_dssp EEEEEEEESS--CGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHH
T ss_pred eEEEEEEEcC--CCCCceEEEEecCCCceEEEecHHHHHHHHHhcCCCHHHHHH
Confidence 3455555433 123344333333333344444333332222234455555543
No 199
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=32.20 E-value=3.1e+02 Score=28.31 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1122)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i 674 (1122)
+.++..+++.+......+.++|..++..-..|+.++...++++
T Consensus 179 I~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 179 IRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444443334444444444433
No 200
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.81 E-value=90 Score=32.29 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001214 658 SKIVQLKTAMHRLEEKV 674 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i 674 (1122)
+.+..++..+.+|.+.+
T Consensus 34 krik~ne~sL~dL~d~i 50 (233)
T 2yko_A 34 KRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344444444444433
No 201
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.75 E-value=61 Score=22.93 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhHHH
Q 001214 665 TAMHRLEEKVSDMET 679 (1122)
Q Consensus 665 ~~~~~le~~i~~Le~ 679 (1122)
.+..+|++++.+|++
T Consensus 15 ~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 15 SEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 333333333333333
No 202
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.58 E-value=4.8e+02 Score=31.05 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.0
Q ss_pred ccccccccccccc
Q 001214 68 LIGVLDIYGFESF 80 (1122)
Q Consensus 68 ~IgiLDi~GFE~f 80 (1122)
.|-++|++||-..
T Consensus 92 ~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 92 ILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEECCBCCG
T ss_pred eEEEecCCCcCcc
Confidence 4678999998654
No 203
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.37 E-value=3.6e+02 Score=25.88 Aligned_cols=8 Identities=38% Similarity=0.484 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001214 565 LQSALQEM 572 (1122)
Q Consensus 565 L~~~l~~l 572 (1122)
|+..+.+|
T Consensus 55 L~~~~~~L 62 (155)
T 2oto_A 55 LEKAKQAL 62 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 204
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.90 E-value=1.1e+02 Score=20.39 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 661 ~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
..+..++..|+.+|..|+-|+..++|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666666666666666666655
No 205
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=30.50 E-value=77 Score=40.55 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=35.1
Q ss_pred ccchhhhchhhhhHhhhhHhhhhcccccccc----ccccchhhhhHHHHHHHHHHHHHHHhhh
Q 001214 389 LSRKNYIMLRRSAIHIQAACRGQLARTVYES----MRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1122)
Q Consensus 389 ~~R~~y~~~r~a~i~iQ~~~Rg~lar~~~~~----~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1122)
+...+-.++..+++.||...|+...++.++. ++.......++...+-+..++.|....+
T Consensus 754 LE~~R~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~fk~~~k 816 (1010)
T 1g8x_A 754 IEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccC
Confidence 3333344556778888877666544332222 2223344568888888888888887543
No 206
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.26 E-value=36 Score=35.65 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001214 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1122)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~ 688 (1122)
..++.+++.++..+..+++.|.+.+.+++.|+..++.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777778877777754
No 207
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.20 E-value=1e+02 Score=35.13 Aligned_cols=29 Identities=14% Similarity=0.000 Sum_probs=23.0
Q ss_pred CHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 001214 1064 SVQQLYRICTLYWDDNYNTRSVSPNVISSM 1093 (1122)
Q Consensus 1064 s~~Qi~~il~~Y~~d~~e~~~v~~~~i~~l 1093 (1122)
.+.=|..||.+|..++..- .||+.+--++
T Consensus 384 v~R~l~allE~~~~~dG~i-~iP~~L~Py~ 412 (421)
T 1ses_A 384 TPRILAMLLENHQLQDGRV-RVPQALIPYM 412 (421)
T ss_dssp ETHHHHHHHHHHBCTTSCE-ECCGGGHHHH
T ss_pred HHHHHHHHHHhCCCCCCCE-ecChhcCCcc
Confidence 4668999999999887753 7888877666
No 208
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.18 E-value=1.5e+02 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001214 522 ETGALQAAKNKLEKQVEELTW 542 (1122)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~ 542 (1122)
.+.+|++.+..|-.++..|+.
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~ 32 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEF 32 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 209
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.97 E-value=1.3e+02 Score=26.59 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001214 613 ELTSENEKLKTLVSSL 628 (1122)
Q Consensus 613 ~L~~e~~kLe~~l~~l 628 (1122)
.|.+.+..|+..+.++
T Consensus 16 ~Lq~~~~~LE~~l~e~ 31 (95)
T 3mov_A 16 QGQKESRACLERIQEL 31 (95)
T ss_dssp --CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 210
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.95 E-value=1e+02 Score=21.83 Aligned_cols=25 Identities=44% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l 632 (1122)
++++++|..++..|+.++..|++-+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555566666666655555555443
No 211
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.86 E-value=91 Score=24.43 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001214 617 ENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele 636 (1122)
+.+.|+.++++|+.++.++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333
No 212
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.68 E-value=2.9e+02 Score=27.44 Aligned_cols=10 Identities=0% Similarity=0.507 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 001214 793 SVFDRLIQMI 802 (1122)
Q Consensus 793 ~ll~~i~~~i 802 (1122)
.|.++++.++
T Consensus 170 qFY~Kv~kaL 179 (190)
T 4emc_A 170 QFYNKIAKSL 179 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 4444544443
No 213
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=29.51 E-value=3e+02 Score=24.43 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
.+|.++.....+-+..+.+++..|..|++|+
T Consensus 64 ArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 64 ARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555556666666666666665
No 214
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.76 E-value=3.5e+02 Score=24.92 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhHH
Q 001214 663 LKTAMHRLEEKVSDME 678 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le 678 (1122)
++..+++|+.+|.+.+
T Consensus 80 Y~~~~keLd~~ik~qe 95 (119)
T 3etw_A 80 YEDALKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444443333
No 215
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.33 E-value=1.3e+02 Score=25.54 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l 684 (1122)
...+|..++..++++|..|++||..|
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554443
No 216
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.06 E-value=2.5e+02 Score=23.09 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001214 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~ 679 (1122)
|++.+..-+.++..++....-..+..+.+...+-.+.=+..-|++++..+++
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3333333333333333333322233334444444444455555566555554
No 217
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.02 E-value=2.1e+02 Score=24.62 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001214 658 SKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 658 ~~~~~l~~~~~~le~~i~~Le 678 (1122)
+.+..|++.+...+..|.+|+
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444443
No 218
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=27.91 E-value=4.3e+02 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1122)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~ 646 (1122)
..+..=+.-+.+.+.+++..+.+..+.+....+..
T Consensus 74 ~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~L 108 (169)
T 3k29_A 74 LKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKEL 108 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444443333333
No 219
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.47 E-value=2.8e+02 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001214 651 KQALEAESKIVQLKTAMHRLEEKVSDME 678 (1122)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~le~~i~~Le 678 (1122)
.++..++.+...|..++..|+.++..|.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555544444443
No 220
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.18 E-value=1.5e+02 Score=29.29 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETEN 681 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~ 681 (1122)
+++++.+.+++.+++.++.....+.
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655544443
No 221
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=27.12 E-value=7.6e+02 Score=28.30 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=8.2
Q ss_pred CeeeeecCCCCCCCCCccc
Q 001214 264 PHYIRCVKPNNLLKPAIFE 282 (1122)
Q Consensus 264 ~hfirCikpN~~~~~~~fd 282 (1122)
|.-|.-||.-....|+.|-
T Consensus 203 Pm~VPVVkA~pTarPgVys 221 (551)
T 2b5u_A 203 PMSCPVVDAKPTERPGVFT 221 (551)
T ss_dssp CEEEEEEECEECSSTTCEE
T ss_pred CceeeeeeccccCCCceEE
Confidence 3344444444444444443
No 222
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.01 E-value=1.1e+02 Score=20.12 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 001214 619 EKLKTLVSSLEKKI 632 (1122)
Q Consensus 619 ~kLe~~l~~l~~~l 632 (1122)
..|+..++.+++++
T Consensus 11 aalesklqalekkl 24 (31)
T 3ljm_A 11 AALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 223
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=27.00 E-value=21 Score=22.85 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHH
Q 001214 425 SCLRIQRDLRMYLAK 439 (1122)
Q Consensus 425 AAi~IQ~~~R~~~~r 439 (1122)
|+..||-+||.+..|
T Consensus 8 A~llI~d~~r~~k~r 22 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 677778887777654
No 224
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.85 E-value=54 Score=21.02 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQIL 684 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~~l 684 (1122)
+..+..+|+.+|..|+-|+..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 3344444445555555554443
No 225
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.98 E-value=1.3e+02 Score=34.17 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=6.3
Q ss_pred HhhchHHHHHHHhh
Q 001214 1006 VKAGLAELELWCCQ 1019 (1122)
Q Consensus 1006 Ir~nls~Le~W~~~ 1019 (1122)
|-|.=|.|-..+++
T Consensus 332 iPyRdSkLT~LLqd 345 (412)
T 3u06_A 332 IPYRNSKLTHLLMP 345 (412)
T ss_dssp CCGGGSHHHHHHGG
T ss_pred CCccccHHHHHHHH
Confidence 44444444444443
No 226
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.94 E-value=1.3e+02 Score=32.95 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=5.1
Q ss_pred chhhHHHh
Q 001214 814 HMAYWLSN 821 (1122)
Q Consensus 814 ~l~fWLsN 821 (1122)
..-|||.|
T Consensus 145 ~gEfWLGl 152 (323)
T 1lwu_C 145 TTEFWLGN 152 (323)
T ss_dssp CSCEECCH
T ss_pred CccEEecc
Confidence 45677766
No 227
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.07 E-value=7.5e+02 Score=28.17 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 657 ~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
...++.|+..+..+..+|++|+..+..++..
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556677777777777777777777776664
No 228
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=25.02 E-value=5.2e+02 Score=26.68 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001214 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1122)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~~~ 689 (1122)
+..|.++++.+...++-|.-+..-...++.++......+...-..+.++++.++.+-..|+..+..++..++.++.-++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 4566777777777776666655555666666666666665555556667777777777777777777777777665444
No 229
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.89 E-value=1.4e+02 Score=22.05 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETE 636 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1122)
+++....|+.+.++.+.+++.++.+++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444444
No 230
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.85 E-value=1.8e+02 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
|...+..++++|..|++||..|+
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 231
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.84 E-value=3e+02 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001214 559 TQENAKLQSALQEMQLQFK 577 (1122)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~ 577 (1122)
..|+..|...+..|..++.
T Consensus 49 ~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443
No 232
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.51 E-value=1.6e+02 Score=19.73 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhHH
Q 001214 663 LKTAMHRLEEKVSDME 678 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le 678 (1122)
|+.-+.+|++++.+|+
T Consensus 11 l~~ivq~lq~r~drle 26 (32)
T 2akf_A 11 LNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 233
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.19 E-value=2.8e+02 Score=22.29 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001214 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~ 679 (1122)
+..+++.++.....|..++..|++++..|+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555554444443
No 234
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=24.16 E-value=4.2e+02 Score=24.36 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 654 ~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
.+.++....|+++++..+..|...+ .++.++.
T Consensus 78 k~Y~~~~keLd~~ik~qekiIdnFE-~ik~lr~ 109 (119)
T 3etw_A 78 SKYEDALKKLEAEMEQQKAVISDFE-KIQALRA 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 3334444555666665555555443 2344443
No 235
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.08 E-value=2.7e+02 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001214 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1122)
Q Consensus 653 l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q~ 687 (1122)
++.++..+...+.++..++.++..++.+++..+.+
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777777777777777776664
No 236
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.78 E-value=2.4e+02 Score=22.85 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001214 663 LKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 663 l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
|+.++..|+.+...|..++..|+
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444443
No 237
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.68 E-value=3e+02 Score=22.46 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001214 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1122)
Q Consensus 643 ~~~~~~~~~~l~~~~~~~~~l~~~~~~le~~i~~Le~e~~~l~q 686 (1122)
+.+..++..-+..+..++..+..-.+.|+++....+.....|.+
T Consensus 16 q~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k 59 (74)
T 2q6q_A 16 QNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEK 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 33333333333344444444444444444444444444444433
No 238
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.59 E-value=2.4e+02 Score=21.38 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 001214 564 KLQSALQEMQ 573 (1122)
Q Consensus 564 ~L~~~l~~le 573 (1122)
+|+.++..+|
T Consensus 34 KlKqRit~lE 43 (46)
T 3swy_A 34 KMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 239
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.83 E-value=2.8e+02 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1122)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1122)
.+-.|..+...|+++...+.+.+++..+...++++
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444444443
No 240
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.64 E-value=1e+02 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001214 652 QALEAESKIVQLKTAMHRLEEKVSDMET 679 (1122)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~le~~i~~Le~ 679 (1122)
+...++.++.+|-.+..+|++++.+|++
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
No 241
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.14 E-value=4.4e+02 Score=23.81 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001214 525 ALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKES 579 (1122)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~ 579 (1122)
.|++.....|.++.-.+++|..+++ .+..--..+..+++.|+..+.+++..++..
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666665432 122222234455566666666666555544
No 242
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.09 E-value=1.5e+02 Score=21.03 Aligned_cols=23 Identities=48% Similarity=0.450 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001214 608 HAVVEELTSENEKLKTLVSSLEK 630 (1122)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~ 630 (1122)
++++++|..++..|+.++..|++
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555555555555544443
No 243
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.44 E-value=3.5e+02 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001214 659 KIVQLKTAMHRLEEKVSDMETENQILR 685 (1122)
Q Consensus 659 ~~~~l~~~~~~le~~i~~Le~e~~~l~ 685 (1122)
.+...+.++.+++-.|+.|+.|++.++
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666777777777777776654
No 244
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.99 E-value=5.6e+02 Score=24.57 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=6.0
Q ss_pred HHHHHHHhhcccc
Q 001214 588 EVAKKEAEKVPVV 600 (1122)
Q Consensus 588 ~~~~~~~ee~~~~ 600 (1122)
.++..+...++.+
T Consensus 71 kqIe~LIdsLPg~ 83 (151)
T 1yke_B 71 RQINKLIDSLPGV 83 (151)
T ss_dssp HHHHHHHHHCTTS
T ss_pred HHHHHHHHhCCCC
Confidence 3444455555433
No 245
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.23 E-value=2.6e+02 Score=20.44 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001214 664 KTAMHRLE 671 (1122)
Q Consensus 664 ~~~~~~le 671 (1122)
..++.+|+
T Consensus 37 rdeiarle 44 (52)
T 3he5_B 37 RDEIARLE 44 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
Done!