Query 001215
Match_columns 1122
No_of_seqs 588 out of 3834
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 2E-121 8E-126 1133.3 46.5 611 61-733 14-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 8E-117 3E-121 1040.8 36.3 490 59-579 7-508 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 5E-114 2E-118 1016.1 48.5 478 59-579 4-493 (505)
4 4e04_A Bacteriophytochrome (li 100.0 1.8E-82 6.2E-87 703.8 31.1 303 61-394 9-316 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 1.4E-82 4.7E-87 705.3 29.5 302 59-397 30-337 (343)
6 2ool_A Sensor protein; bacteri 100.0 5.9E-79 2E-83 685.1 33.8 303 62-395 23-330 (337)
7 3a0r_A Sensor protein; four he 100.0 6.7E-41 2.3E-45 385.8 23.3 339 736-1115 3-347 (349)
8 2c2a_A Sensor histidine kinase 100.0 8.7E-33 3E-37 304.7 27.4 238 863-1116 1-251 (258)
9 4glq_A Methyl-accepting chemot 100.0 1.5E-33 5.1E-38 290.6 16.2 152 205-393 3-155 (171)
10 4ew8_A Sensor protein DIVL; si 100.0 4E-30 1.4E-34 284.7 30.1 224 881-1118 34-261 (268)
11 4fpp_A Phosphotransferase; fou 100.0 1.5E-30 5E-35 285.2 20.3 226 853-1111 17-246 (247)
12 3jz3_A Sensor protein QSEC; he 100.0 2.9E-30 9.9E-35 277.0 10.8 212 887-1116 2-220 (222)
13 1gkz_A [3-methyl-2-oxobutanoat 100.0 3.7E-28 1.3E-32 284.2 24.4 218 884-1118 118-378 (388)
14 3d36_A Sporulation kinase B; G 100.0 7.5E-28 2.6E-32 262.1 24.5 210 886-1115 13-227 (244)
15 2btz_A Pyruvate dehydrogenase 100.0 2.6E-27 8.8E-32 277.6 23.8 214 888-1115 96-352 (394)
16 2k2n_A Sensor protein, SYB-CPH 100.0 1.1E-27 3.8E-32 247.0 17.2 164 216-392 1-167 (172)
17 2e0a_A Pyruvate dehydrogenase 99.9 5.4E-27 1.8E-31 274.8 24.7 212 888-1114 96-351 (394)
18 2q8g_A [pyruvate dehydrogenase 99.9 6.8E-27 2.3E-31 275.1 22.6 210 889-1114 107-364 (407)
19 3ewk_A Sensor protein; PAS dom 99.9 3.2E-25 1.1E-29 239.1 27.5 221 623-865 1-227 (227)
20 2lb5_A Sensor histidine kinase 99.9 2.3E-26 7.9E-31 244.7 17.6 182 196-392 13-197 (208)
21 1y8o_A [pyruvate dehydrogenase 99.9 5.5E-26 1.9E-30 268.2 21.6 210 891-1114 121-375 (419)
22 1b3q_A Protein (chemotaxis pro 99.9 1.2E-22 4E-27 236.2 16.5 196 885-1113 8-248 (379)
23 3ehh_A Sensor kinase (YOCF pro 99.9 7.6E-22 2.6E-26 211.1 20.5 186 886-1110 27-215 (218)
24 1id0_A PHOQ histidine kinase; 99.9 1.9E-21 6.7E-26 195.5 19.1 144 957-1117 2-149 (152)
25 3a0y_A Sensor protein; ATP-LID 99.9 2.6E-21 9E-26 194.3 17.9 146 955-1115 2-150 (152)
26 1ysr_A Sensor-type histidine k 99.9 4.9E-21 1.7E-25 192.3 16.9 141 955-1113 4-149 (150)
27 1r62_A Nitrogen regulation pro 99.8 7.3E-21 2.5E-25 192.7 15.4 155 953-1113 2-159 (160)
28 3sl2_A Sensor histidine kinase 99.8 1.5E-20 5.1E-25 194.5 17.8 142 958-1114 2-153 (177)
29 1bxd_A ENVZ(290-450), protein 99.8 1.7E-20 5.9E-25 190.8 17.2 146 953-1118 4-155 (161)
30 4f3l_A Mclock, circadian locom 99.8 6.2E-19 2.1E-23 203.6 20.4 239 612-873 87-360 (361)
31 1i58_A Chemotaxis protein CHEA 99.8 3.6E-19 1.2E-23 186.2 13.0 146 956-1112 2-188 (189)
32 4f3l_B BMAL1B; BHLH, PAS, circ 99.8 4.1E-18 1.4E-22 198.4 19.7 237 613-871 88-386 (387)
33 3ehg_A Sensor kinase (YOCF pro 99.7 6.4E-18 2.2E-22 165.0 13.0 124 959-1110 2-125 (128)
34 3mr0_A Sensory box histidine k 99.7 4.9E-17 1.7E-21 161.0 15.6 139 604-746 2-142 (142)
35 3zxo_A Redox sensor histidine 99.7 1E-16 3.4E-21 156.4 13.6 126 956-1113 2-128 (129)
36 3zxq_A Hypoxia sensor histidin 99.6 1.5E-15 5.2E-20 146.9 14.4 121 960-1112 2-122 (124)
37 3rty_A Period circadian protei 99.6 8.6E-15 3E-19 166.0 19.7 221 624-868 6-263 (339)
38 3mr0_A Sensory box histidine k 99.6 4.4E-15 1.5E-19 146.8 14.9 138 734-883 2-139 (142)
39 3p7n_A Sensor histidine kinase 99.6 3.2E-15 1.1E-19 163.8 14.9 192 707-912 23-237 (258)
40 3p7n_A Sensor histidine kinase 99.6 1.6E-15 5.5E-20 166.2 11.9 178 599-787 51-233 (258)
41 2pr5_A Blue-light photorecepto 99.6 7.6E-15 2.6E-19 142.8 14.8 127 614-746 2-131 (132)
42 2gj3_A Nitrogen fixation regul 99.6 7.3E-15 2.5E-19 140.4 14.0 117 610-730 4-120 (120)
43 3k3c_A Protein RV1364C/MT1410; 99.6 8.2E-15 2.8E-19 146.8 14.7 140 609-751 15-157 (158)
44 3f1p_B ARYL hydrocarbon recept 99.6 6E-15 2E-19 140.9 11.9 115 613-731 4-120 (121)
45 4hia_A LOV protein; PAS, HTH, 99.6 2.1E-15 7.1E-20 154.3 8.8 125 610-738 6-133 (176)
46 3ue6_A Aureochrome1; PAS/LOV d 99.6 8.9E-15 3E-19 147.2 12.9 140 599-743 23-165 (166)
47 3nja_A Probable ggdef family p 99.6 1.7E-14 5.7E-19 136.8 12.3 122 606-731 2-125 (125)
48 3kx0_X Uncharacterized protein 99.5 1.3E-14 4.5E-19 150.5 10.4 141 608-752 34-182 (185)
49 1th8_A Anti-sigma F factor; SP 99.5 4.2E-14 1.4E-18 140.9 12.6 104 998-1117 35-143 (145)
50 3t50_A Blue-light-activated hi 99.5 5.2E-14 1.8E-18 134.9 12.5 123 616-742 2-127 (128)
51 4dj3_A Period circadian protei 99.5 2.5E-13 8.5E-18 152.5 19.2 223 616-864 31-277 (317)
52 1mu5_A Type II DNA topoisomera 99.5 4.5E-14 1.5E-18 166.5 12.7 110 996-1113 26-150 (471)
53 3f1p_A Endothelial PAS domain- 99.5 3.7E-14 1.3E-18 134.4 9.8 109 619-731 7-116 (117)
54 3mxq_A Sensor protein; PSI2, M 99.5 5.3E-14 1.8E-18 141.3 11.3 129 604-733 15-151 (152)
55 1d06_A Nitrogen fixation regul 99.5 4.7E-14 1.6E-18 136.7 10.7 125 597-727 2-130 (130)
56 2pr5_A Blue-light photorecepto 99.5 2.7E-13 9.2E-18 131.7 15.8 124 745-884 3-129 (132)
57 2zbk_B Type 2 DNA topoisomeras 99.5 4.7E-14 1.6E-18 168.0 11.9 107 996-1113 24-149 (530)
58 3ue6_A Aureochrome1; PAS/LOV d 99.5 1.6E-13 5.3E-18 138.0 13.2 135 727-875 21-158 (166)
59 3sw1_A Sensory box protein; li 99.5 2.7E-13 9.2E-18 135.8 14.9 132 610-745 24-158 (162)
60 2gj3_A Nitrogen fixation regul 99.5 1.1E-13 3.8E-18 132.1 11.2 118 739-870 3-120 (120)
61 3f1p_B ARYL hydrocarbon recept 99.5 1.4E-13 4.8E-18 131.3 11.0 115 743-871 4-120 (121)
62 4hia_A LOV protein; PAS, HTH, 99.5 3.3E-13 1.1E-17 137.8 14.1 122 740-875 6-130 (176)
63 3gdi_A Period circadian protei 99.5 1.7E-12 5.8E-17 145.3 20.6 228 615-867 19-270 (309)
64 3h9w_A Diguanylate cyclase wit 99.5 2.1E-13 7E-18 128.9 10.7 111 620-734 2-114 (115)
65 1d06_A Nitrogen fixation regul 99.4 8.4E-13 2.9E-17 127.8 15.0 125 727-867 2-130 (130)
66 4dj2_A Period circadian protei 99.4 1.4E-12 5E-17 146.4 18.2 225 617-868 32-282 (320)
67 3luq_A Sensor protein; PAS, hi 99.4 7.2E-13 2.5E-17 123.3 13.2 113 610-727 2-114 (114)
68 2vv6_A FIXL, sensor protein FI 99.4 2.1E-13 7.2E-18 129.8 9.5 114 619-738 1-118 (119)
69 3nja_A Probable ggdef family p 99.4 3.7E-13 1.3E-17 127.4 11.0 124 736-871 2-125 (125)
70 3lyx_A Sensory BOX/ggdef domai 99.4 1E-12 3.5E-17 122.8 13.6 120 609-732 5-124 (124)
71 3mqq_A Transcriptional regulat 99.4 3.7E-13 1.3E-17 128.2 10.2 115 612-732 4-119 (120)
72 4eet_B Phototropin-2; LOV, blu 99.4 1.4E-12 4.8E-17 121.3 13.6 111 616-730 2-115 (115)
73 2z6d_A Phototropin-2; PAS-fold 99.4 1.7E-12 5.7E-17 122.3 14.2 124 608-735 3-129 (130)
74 2r78_A Sensor protein; sensory 99.4 3E-12 1E-16 121.8 15.3 113 605-727 5-117 (117)
75 2v0u_A NPH1-1, LOV2; kinase, t 99.4 6.6E-13 2.3E-17 128.3 10.8 135 613-752 4-141 (146)
76 3icy_A Sensor protein; sensory 99.4 8.4E-13 2.9E-17 124.1 11.2 115 609-727 2-118 (118)
77 3bwl_A Sensor protein; structu 99.4 3E-12 1E-16 122.5 15.1 123 596-727 2-126 (126)
78 3t50_A Blue-light-activated hi 99.4 2.2E-12 7.5E-17 123.4 13.9 119 746-878 2-123 (128)
79 3eeh_A Putative light and redo 99.4 1E-12 3.5E-17 123.5 10.6 121 602-727 2-125 (125)
80 3f1p_A Endothelial PAS domain- 99.4 7.1E-13 2.4E-17 125.5 9.0 105 756-871 11-116 (117)
81 1n9l_A PHOT-LOV1, putative blu 99.4 3.2E-12 1.1E-16 120.1 13.2 105 620-728 2-109 (109)
82 3bwl_A Sensor protein; structu 99.4 2.9E-12 1E-16 122.6 12.2 124 725-867 1-126 (126)
83 3k3c_A Protein RV1364C/MT1410; 99.4 1.2E-12 4.2E-17 130.8 9.9 130 737-882 13-148 (158)
84 3h9w_A Diguanylate cyclase wit 99.4 1.9E-12 6.3E-17 122.2 10.0 109 756-874 5-114 (115)
85 1v9y_A Heme PAS sensor protein 99.3 1.8E-12 6.2E-17 129.7 10.1 138 595-738 24-165 (167)
86 3sw1_A Sensory box protein; li 99.3 3.2E-12 1.1E-16 127.8 11.5 132 739-884 23-157 (162)
87 3mjq_A Uncharacterized protein 99.3 3.3E-12 1.1E-16 121.3 9.7 120 614-740 2-121 (126)
88 2q2e_B Type 2 DNA topoisomeras 99.3 1.1E-12 3.6E-17 158.3 7.6 109 995-1114 30-155 (621)
89 3icy_A Sensor protein; sensory 99.3 5.4E-12 1.8E-16 118.4 10.8 117 739-867 2-118 (118)
90 3eeh_A Putative light and redo 99.3 1E-11 3.6E-16 116.5 12.7 124 731-867 1-125 (125)
91 1n9l_A PHOT-LOV1, putative blu 99.3 1.1E-11 3.7E-16 116.4 12.6 102 756-868 5-109 (109)
92 3lyx_A Sensory BOX/ggdef domai 99.3 1.4E-11 4.7E-16 115.1 13.2 120 738-871 4-123 (124)
93 2v0u_A NPH1-1, LOV2; kinase, t 99.3 2.3E-11 7.9E-16 117.3 15.1 117 742-872 3-122 (146)
94 2vv6_A FIXL, sensor protein FI 99.3 1.5E-11 5.1E-16 116.9 13.0 110 756-878 5-118 (119)
95 3ewk_A Sensor protein; PAS dom 99.3 1.5E-11 5.2E-16 131.8 14.6 129 589-725 93-227 (227)
96 2kdk_A ARYL hydrocarbon recept 99.3 1E-11 3.4E-16 117.9 11.6 112 615-730 7-120 (121)
97 2wkq_A NPH1-1, RAS-related C3 99.3 1E-11 3.4E-16 141.2 13.6 119 615-737 15-136 (332)
98 4eet_B Phototropin-2; LOV, blu 99.3 2.2E-11 7.5E-16 113.1 12.5 109 747-869 3-114 (115)
99 3mqq_A Transcriptional regulat 99.3 4.6E-12 1.6E-16 120.5 7.8 117 741-872 3-119 (120)
100 2z6d_A Phototropin-2; PAS-fold 99.3 2.4E-11 8.1E-16 114.2 12.0 124 738-875 3-129 (130)
101 1v9y_A Heme PAS sensor protein 99.3 1.2E-11 4E-16 123.7 10.3 146 718-879 17-166 (167)
102 2r78_A Sensor protein; sensory 99.3 2.2E-11 7.4E-16 115.8 11.6 114 734-867 4-117 (117)
103 3luq_A Sensor protein; PAS, hi 99.3 1.7E-11 5.8E-16 113.9 10.5 113 740-867 2-114 (114)
104 3olo_A Two-component sensor hi 99.2 4.2E-11 1.4E-15 112.2 11.3 111 606-727 8-118 (118)
105 3mxq_A Sensor protein; PSI2, M 99.2 1.6E-11 5.4E-16 123.2 7.8 123 735-872 16-150 (152)
106 2wkq_A NPH1-1, RAS-related C3 99.2 7.8E-11 2.7E-15 133.8 14.5 120 744-877 14-136 (332)
107 3mjq_A Uncharacterized protein 99.2 8.3E-11 2.8E-15 111.5 12.0 121 743-880 1-121 (126)
108 3vol_A Aerotaxis transducer AE 99.2 1.1E-10 3.6E-15 126.1 14.2 150 610-787 21-183 (233)
109 3fc7_A HTR-like protein, senso 99.1 2.6E-11 8.7E-16 115.2 5.9 108 609-727 17-125 (125)
110 2kdk_A ARYL hydrocarbon recept 99.1 2.2E-10 7.5E-15 108.5 12.2 113 743-869 5-119 (121)
111 2qkp_A Uncharacterized protein 99.1 1.9E-10 6.6E-15 115.2 12.2 123 611-740 19-144 (151)
112 2l0w_A Potassium voltage-gated 99.1 4.6E-10 1.6E-14 107.1 14.1 113 613-729 21-138 (138)
113 3kx0_X Uncharacterized protein 99.1 2.7E-11 9.3E-16 125.3 5.2 123 737-875 33-161 (185)
114 3vol_A Aerotaxis transducer AE 99.1 4.3E-10 1.5E-14 121.3 13.8 122 740-885 21-154 (233)
115 3p01_A Two-component response 99.1 1.7E-09 5.8E-14 111.7 16.2 152 197-392 28-179 (184)
116 1byw_A Protein (human ERG pota 99.1 1.3E-09 4.5E-14 98.9 13.6 104 622-729 2-110 (110)
117 3mfx_A Sensory BOX/ggdef famil 99.1 3.5E-10 1.2E-14 110.2 9.5 113 611-728 7-124 (129)
118 3fg8_A Uncharacterized protein 99.1 6.4E-11 2.2E-15 112.8 4.0 114 604-729 5-118 (118)
119 4hi4_A Aerotaxis transducer AE 99.0 1.3E-09 4.4E-14 104.2 12.4 105 611-729 5-121 (121)
120 4f3l_A Mclock, circadian locom 99.0 4.3E-10 1.5E-14 129.5 10.5 110 620-733 250-360 (361)
121 3olo_A Two-component sensor hi 99.0 5.2E-10 1.8E-14 104.7 9.1 112 735-867 7-118 (118)
122 2vlg_A Sporulation kinase A; h 99.0 1E-09 3.6E-14 103.8 10.3 95 615-716 3-97 (111)
123 4eho_A Bacteriophytochrome, PA 99.0 8.3E-11 2.9E-15 145.3 2.8 123 736-873 513-635 (635)
124 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 7.8E-10 2.7E-14 128.5 10.7 108 620-731 277-386 (387)
125 3d72_A Vivid PAS protein VVD; 99.0 2.3E-09 8E-14 105.4 12.7 110 741-865 26-149 (149)
126 3d72_A Vivid PAS protein VVD; 99.0 1.6E-09 5.5E-14 106.6 11.2 106 615-725 30-149 (149)
127 1byw_A Protein (human ERG pota 99.0 2.9E-09 9.9E-14 96.6 11.9 104 756-869 3-110 (110)
128 2l0w_A Potassium voltage-gated 98.9 4.7E-09 1.6E-13 99.9 12.4 111 745-868 23-137 (138)
129 2ykf_A Pdtas, probable sensor 98.4 1.4E-10 4.8E-15 130.1 0.0 170 702-896 111-305 (305)
130 3b33_A Sensor protein; structu 98.9 4.2E-09 1.4E-13 98.7 10.0 105 614-727 10-115 (115)
131 2zmf_A CAMP and CAMP-inhibited 98.9 2.8E-08 9.7E-13 101.9 17.0 155 199-392 13-176 (189)
132 3fc7_A HTR-like protein, senso 98.9 2.9E-09 1E-13 100.8 7.2 108 739-867 17-125 (125)
133 2vlg_A Sporulation kinase A; h 98.8 1.3E-08 4.3E-13 96.3 10.7 95 745-856 3-97 (111)
134 3mfx_A Sensory BOX/ggdef famil 98.8 5E-09 1.7E-13 101.9 8.1 111 741-868 7-124 (129)
135 3k2n_A Sigma-54-dependent tran 98.8 1.6E-07 5.4E-12 95.5 19.6 160 198-392 5-166 (177)
136 3oov_A Methyl-accepting chemot 98.8 7E-08 2.4E-12 97.0 16.6 155 204-392 7-162 (169)
137 3a0r_A Sensor protein; four he 98.8 1.2E-09 4E-14 124.7 3.7 123 606-739 3-126 (349)
138 1ll8_A PAS kinase; PAS domain, 98.8 2.1E-09 7.2E-14 100.9 4.6 103 619-727 6-113 (114)
139 3cax_A Uncharacterized protein 98.8 1.3E-08 4.3E-13 117.5 11.7 114 612-735 240-353 (369)
140 3fg8_A Uncharacterized protein 98.8 5.9E-09 2E-13 99.0 6.9 113 735-869 6-118 (118)
141 4hi4_A Aerotaxis transducer AE 98.8 1.6E-08 5.5E-13 96.4 9.8 105 741-869 5-121 (121)
142 2w0n_A Sensor protein DCUS; si 98.8 1.6E-09 5.6E-14 101.1 2.7 109 603-727 7-118 (118)
143 2qkp_A Uncharacterized protein 98.8 1.3E-08 4.5E-13 101.8 8.8 117 741-875 19-139 (151)
144 1ykd_A Adenylate cyclase; GAF 98.8 5.7E-07 1.9E-11 104.6 23.9 319 201-581 11-376 (398)
145 3trc_A Phosphoenolpyruvate-pro 98.7 3.1E-07 1.1E-11 92.4 18.1 157 196-392 5-161 (171)
146 3ci6_A Phosphoenolpyruvate-pro 98.7 4.5E-07 1.5E-11 90.6 18.7 155 198-392 9-163 (171)
147 3e0y_A Conserved domain protei 98.7 2.6E-07 9E-12 93.8 16.4 149 202-392 18-166 (181)
148 2qyb_A Membrane protein, putat 98.7 2E-07 6.8E-12 95.3 14.6 143 213-393 15-159 (181)
149 2e4s_A CAMP and CAMP-inhibited 98.7 2.4E-07 8.2E-12 95.1 15.1 155 198-392 12-176 (189)
150 2jhe_A Transcription regulator 98.7 2.2E-08 7.4E-13 103.6 6.7 109 608-730 77-189 (190)
151 3ibj_A CGMP-dependent 3',5'-cy 98.6 2.2E-06 7.4E-11 107.3 25.3 264 198-507 14-296 (691)
152 4dj3_A Period circadian protei 98.6 1.1E-07 3.8E-12 106.5 11.7 123 622-748 175-314 (317)
153 3b33_A Sensor protein; structu 98.6 6.9E-08 2.4E-12 90.2 8.5 105 744-867 10-115 (115)
154 3a0s_A Sensor protein; PAS-fol 98.6 3.5E-07 1.2E-11 80.6 12.4 95 620-725 1-96 (96)
155 1mc0_A 3',5'-cyclic nucleotide 98.6 3.9E-07 1.3E-11 104.7 15.7 205 199-445 14-222 (368)
156 1ll8_A PAS kinase; PAS domain, 98.6 4.1E-08 1.4E-12 91.9 5.6 99 756-867 10-113 (114)
157 3hcy_A Putative two-component 98.5 3E-07 1E-11 91.0 11.0 138 213-392 1-139 (151)
158 3o5y_A Sensor protein; GAF dom 98.5 1.4E-06 4.8E-11 88.3 16.1 138 214-392 4-143 (165)
159 3rty_A Period circadian protei 98.5 3.3E-07 1.1E-11 103.7 11.5 105 621-729 154-264 (339)
160 2w0n_A Sensor protein DCUS; si 98.4 8.2E-08 2.8E-12 89.3 3.9 108 733-867 7-118 (118)
161 1nwz_A PYP, photoactive yellow 98.4 5.8E-07 2E-11 85.8 9.6 102 614-721 20-122 (125)
162 1mzu_A PPR; photoactive yellow 98.4 4.6E-07 1.6E-11 86.6 8.3 101 615-721 26-127 (129)
163 1mc0_A 3',5'-cyclic nucleotide 98.4 3.6E-06 1.2E-10 96.5 17.6 148 203-392 185-337 (368)
164 2ykf_A Pdtas, probable sensor 97.8 3.5E-08 1.2E-12 110.5 0.0 119 616-745 175-302 (305)
165 3cax_A Uncharacterized protein 98.4 6.2E-07 2.1E-11 103.3 9.2 115 740-874 238-352 (369)
166 3ke6_A Protein RV1364C/MT1410; 98.4 7.1E-07 2.4E-11 104.0 9.7 92 999-1112 294-387 (399)
167 1mzu_A PPR; photoactive yellow 98.3 2E-06 6.7E-11 82.3 10.6 101 744-860 25-126 (129)
168 1nwz_A PYP, photoactive yellow 98.3 2.2E-06 7.7E-11 81.7 10.3 101 744-860 20-121 (125)
169 3gdi_A Period circadian protei 98.3 3.2E-06 1.1E-10 94.4 12.8 102 623-728 167-271 (309)
170 4dj2_A Period circadian protei 98.3 2.5E-06 8.4E-11 95.8 11.7 103 622-728 177-282 (320)
171 3a0s_A Sensor protein; PAS-fol 98.3 3.4E-06 1.2E-10 74.1 9.8 93 755-865 3-96 (96)
172 2w3g_A DOSS, two component sen 98.3 2.6E-06 9E-11 83.6 10.0 140 213-392 4-145 (153)
173 1ixm_A SPO0B, protein (sporula 98.3 1.1E-05 3.9E-10 83.3 14.8 139 889-1068 23-168 (192)
174 2vjw_A GAF-B, GAF family prote 98.2 3E-05 1E-09 77.0 15.1 128 215-391 1-133 (149)
175 2jhe_A Transcription regulator 98.1 1.4E-06 4.8E-11 89.8 5.5 106 739-870 78-189 (190)
176 1ykd_A Adenylate cyclase; GAF 98.1 3E-05 1E-09 90.0 17.0 140 214-392 213-376 (398)
177 3na3_A DNA mismatch repair pro 97.9 4.2E-05 1.4E-09 86.1 12.1 80 1002-1100 28-121 (348)
178 1b63_A MUTL; DNA mismatch repa 97.9 2.3E-05 7.9E-10 88.5 9.9 69 1002-1084 24-106 (333)
179 1h7s_A PMS1 protein homolog 2; 97.9 2.4E-05 8.1E-10 89.2 9.9 70 1002-1085 34-117 (365)
180 3ibj_A CGMP-dependent 3',5'-cy 97.9 9.6E-05 3.3E-09 92.4 16.2 141 214-393 195-338 (691)
181 3dba_A CONE CGMP-specific 3',5 97.9 0.00013 4.4E-09 74.7 14.2 155 198-391 6-172 (180)
182 3bjc_A CGMP-specific 3',5'-cyc 97.8 2.6E-06 9E-11 109.2 0.0 154 200-392 154-319 (878)
183 3mmh_A FRMSR, methionine-R-sul 97.8 0.00096 3.3E-08 67.4 18.6 146 197-390 14-160 (167)
184 1kij_A DNA gyrase subunit B; t 97.8 4E-05 1.4E-09 88.2 9.3 77 997-1089 31-127 (390)
185 3h4l_A DNA mismatch repair pro 97.6 0.00014 4.7E-09 82.6 10.2 54 1002-1069 25-78 (367)
186 1vhm_A Protein YEBR; structura 97.5 0.004 1.4E-07 64.4 17.8 142 200-391 30-172 (195)
187 3ksh_A Putative uncharacterize 97.3 0.0096 3.3E-07 59.4 17.5 144 197-390 14-159 (160)
188 1f5m_A GAF; CGMP binding, sign 97.1 0.0067 2.3E-07 62.0 14.3 141 202-389 30-176 (180)
189 2wer_A ATP-dependent molecular 97.1 0.00017 5.9E-09 76.4 2.3 55 1005-1068 29-95 (220)
190 3rfb_A Putative uncharacterize 97.0 0.015 5.3E-07 58.5 15.9 143 197-389 15-159 (171)
191 1qy5_A Endoplasmin; GRP94, NEC 96.8 0.0002 7E-09 77.6 0.2 54 1005-1067 31-96 (269)
192 3zcc_A HAMP, osmolarity sensor 96.8 0.0038 1.3E-07 57.6 8.9 58 882-944 55-113 (114)
193 1s16_A Topoisomerase IV subuni 96.8 0.0025 8.5E-08 73.1 8.8 71 1004-1086 33-123 (390)
194 1ei1_A DNA gyrase B, GYRB; ATP 96.5 0.0047 1.6E-07 70.8 8.9 74 1002-1087 34-127 (391)
195 1oj5_A Steroid receptor coacti 96.5 0.0037 1.3E-07 59.3 6.1 95 623-722 9-108 (132)
196 1oj5_A Steroid receptor coacti 96.3 0.0083 2.8E-07 56.9 7.7 99 757-867 10-113 (132)
197 1yc1_A HSP 86, heat shock prot 96.3 0.0018 6.2E-08 70.1 3.7 73 1005-1086 71-173 (264)
198 2ior_A Chaperone protein HTPG; 96.2 0.0085 2.9E-07 63.9 7.8 53 1005-1068 50-116 (235)
199 3fv5_A DNA topoisomerase 4 sub 95.9 0.011 3.8E-07 61.3 7.2 47 1004-1062 19-65 (201)
200 4duh_A DNA gyrase subunit B; s 95.9 0.011 3.9E-07 62.0 7.0 74 1001-1086 34-127 (220)
201 3cwv_A DNA gyrase, B subunit, 95.8 0.02 6.8E-07 65.1 9.3 51 999-1061 27-77 (369)
202 4emv_A DNA topoisomerase IV, B 95.8 0.021 7.3E-07 60.1 8.6 75 999-1085 37-130 (226)
203 3cit_A Sensor histidine kinase 95.6 0.19 6.5E-06 49.6 14.1 133 197-392 13-147 (160)
204 3bjc_A CGMP-specific 3',5'-cyc 95.4 0.0028 9.5E-08 81.2 0.0 142 214-392 348-508 (878)
205 3zrx_A AF1503 protein, osmolar 95.2 0.058 2E-06 49.3 8.7 56 885-945 58-114 (115)
206 1zxm_A TOPO IIA ATPase, DNA to 95.0 0.061 2.1E-06 61.6 9.5 75 1000-1085 50-145 (400)
207 2cg9_A ATP-dependent molecular 94.6 0.042 1.4E-06 66.7 7.2 51 1005-1066 29-93 (677)
208 1pvg_A DNA topoisomerase II; G 94.5 0.095 3.3E-06 60.3 9.7 74 1001-1085 63-157 (418)
209 2o1u_A Endoplasmin; GRP94, HSP 94.4 0.021 7.2E-07 69.3 4.2 57 996-1066 42-112 (666)
210 3ttz_A DNA gyrase subunit B; p 94.4 0.11 3.7E-06 53.6 9.0 51 999-1061 28-78 (198)
211 3peh_A Endoplasmin homolog; st 94.0 0.054 1.8E-06 58.5 5.8 72 1005-1085 49-151 (281)
212 2gqp_A Endoplasmin; GRP94, HSP 93.8 0.045 1.5E-06 58.3 4.8 54 1005-1067 35-100 (236)
213 3lnu_A Topoisomerase IV subuni 93.7 0.1 3.5E-06 59.6 7.9 70 1004-1085 52-141 (408)
214 1y4s_A Chaperone protein HTPG; 93.7 0.085 2.9E-06 62.9 7.2 52 1005-1067 30-95 (559)
215 3t0h_A Heat shock protein HSP 93.2 0.03 1E-06 59.1 2.2 54 1005-1067 35-100 (228)
216 3o0i_A HSP90AA1 protein; HSP90 92.4 0.04 1.4E-06 58.9 1.7 53 1005-1066 63-127 (256)
217 3nmq_A Heat shock protein HSP 90.7 0.079 2.7E-06 56.0 1.7 50 1005-1063 42-103 (239)
218 2ioq_A Chaperone protein HTPG; 89.4 0.28 9.4E-06 59.3 5.3 51 1005-1066 30-94 (624)
219 3ied_A Heat shock protein; HSP 89.0 0.091 3.1E-06 55.7 0.6 20 1047-1066 131-150 (272)
220 3szt_A QCSR, quorum-sensing co 82.5 9.2 0.00031 40.2 12.3 127 204-368 8-135 (237)
221 2ool_A Sensor protein; bacteri 82.2 1.6 5.6E-05 48.6 6.4 47 625-671 46-93 (337)
222 3eea_A GAF domain/HD domain pr 81.9 21 0.00072 33.7 12.5 139 215-392 13-156 (162)
223 4gfh_A DNA topoisomerase 2; to 80.9 2.6 8.9E-05 54.6 8.4 73 1002-1085 59-152 (1177)
224 4dah_A Sporulation kinase D; a 78.3 11 0.00039 38.3 11.1 125 608-773 55-181 (217)
225 2w1r_A Spovt, stage V sporulat 77.0 5.6 0.00019 37.3 7.4 119 220-391 4-122 (123)
226 3lif_A Putative diguanylate cy 74.3 37 0.0013 35.3 14.1 125 609-771 56-183 (254)
227 3e4o_A C4-dicarboxylate transp 67.5 58 0.002 35.5 14.0 122 610-773 101-223 (305)
228 3qp6_A CVIR transcriptional re 66.3 79 0.0027 33.5 14.5 135 197-365 20-158 (265)
229 1p0z_A Sensor kinase CITA; tra 63.6 30 0.001 32.3 9.3 87 612-728 40-127 (131)
230 4ew7_A Conjugative transfer: r 48.8 33 0.0011 30.6 5.9 37 612-648 21-57 (127)
231 1p0z_A Sensor kinase CITA; tra 46.4 38 0.0013 31.6 6.8 27 841-867 100-126 (131)
232 4e04_A Bacteriophytochrome (li 46.2 11 0.00036 41.7 3.2 47 624-670 32-78 (327)
233 3nhq_A Bacteriophytochrome; ph 44.7 8.9 0.0003 45.1 2.4 39 202-242 323-361 (505)
234 3lmm_A Uncharacterized protein 44.2 43 0.0015 40.1 8.3 96 1004-1111 298-408 (583)
235 3by8_A Sensor protein DCUS; hi 44.1 71 0.0024 30.2 8.5 79 622-731 57-135 (142)
236 4dah_A Sporulation kinase D; a 41.1 45 0.0015 33.7 7.0 31 835-867 120-150 (217)
237 3by8_A Sensor protein DCUS; hi 38.6 58 0.002 30.8 6.9 27 842-868 106-132 (142)
238 3by9_A Sensor protein; histidi 38.5 1.8E+02 0.0062 29.7 11.6 108 622-771 73-180 (260)
239 3qp1_A CVIR transcriptional re 37.5 3E+02 0.01 26.9 16.3 131 201-366 19-154 (182)
240 4eu0_A PELD; C-DI-GMP, signali 37.5 3.3E+02 0.011 29.3 13.3 123 216-391 24-151 (298)
241 3lid_A Putative sensory BOX/gg 37.1 1E+02 0.0034 33.2 9.4 137 606-771 62-205 (295)
242 3e98_A GAF domain of unknown f 36.6 1.5E+02 0.0051 31.2 10.3 43 201-245 105-147 (252)
243 3s7o_A Bacteriophytochrome; bi 35.9 20 0.0007 39.7 3.4 46 624-670 55-101 (343)
244 4ew7_A Conjugative transfer: r 33.1 2.6E+02 0.009 24.9 10.5 36 742-780 21-56 (127)
245 2q0o_A Probable transcriptiona 25.1 4.1E+02 0.014 27.0 11.3 117 206-364 11-133 (236)
246 2hl0_A Threonyl-tRNA synthetas 22.5 75 0.0026 30.3 4.2 29 215-243 52-83 (143)
247 1l3l_A Transcriptional activat 21.6 3.6E+02 0.012 27.4 10.0 116 206-363 9-130 (234)
248 2avx_A Regulatory protein SDIA 21.3 5.4E+02 0.018 24.5 15.6 125 201-363 10-135 (171)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=2.4e-121 Score=1133.34 Aligned_cols=611 Identities=27% Similarity=0.451 Sum_probs=541.4
Q ss_pred chhhHHH-HhhccCCCCCCccceEEEEecCCcEEEEecCChhhhhCCCCCCCCCcccccccccCcchhhccCchhHHHHH
Q 001215 61 SSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139 (1122)
Q Consensus 61 ~~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 139 (1122)
+-++|.| .||||+||+|||||||||+|+++++|+++|+|+.++||+++ ++|+++.+++++...+.+.
T Consensus 14 ~~dl~~C~~EpIh~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~------------~lg~~l~~~~~~~~~~~~~ 81 (635)
T 4eho_A 14 TADLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS------------VLGVPLAEIDGDLLIKILP 81 (635)
T ss_dssp CCCTTTTTSCBCSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC------------CSSCBSSSSSSSHHHHHGG
T ss_pred CCcCcccccccccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh------------hhCCCHHHHcchHHHHHHh
Confidence 3469999 99999999999999999999999999999999999999743 3899999999988776665
Q ss_pred HHhccCCCCCCCcEEEeec--CCCcceEEEEeec-CceEEEEeeecCCCCCccchhhhhhHHHHHHHHHHHhhcCCCCCH
Q 001215 140 KAANFGEVNLLNPILIHCK--TSGKPFYAILHRI-DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNI 216 (1122)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~-~~~~i~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1122)
.... ....+|+.+++. ..++.|++++||. ++.+||||||..+.. +. +++++++++||++ ++|+
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~---~~------~~~~~~~~~~i~~--s~~l 147 (635)
T 4eho_A 82 HLDP---TAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPI---DL------SGTLAPALERIRT--AGSL 147 (635)
T ss_dssp GCCS---SSCCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCC---CC------CTTSSSHHHHHHH--CCSH
T ss_pred hhhh---hccCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCch---hH------HHHHHHHHHHHHh--hCCH
Confidence 4321 223346666543 4567899999995 578999999986532 22 2334679999999 7799
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCcce
Q 001215 217 SLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVK 296 (1122)
Q Consensus 217 ~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~~~ 296 (1122)
++||+++|+|||++|||||||||||++||||+||||++.++|+||||+||||+|||+++|+||++|++|+|+||+++|||
T Consensus 148 ~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~v~ 227 (635)
T 4eho_A 148 RALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVP 227 (635)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCEEEESCSSCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCeEEEecccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec--CCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCChh
Q 001215 297 VIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFP 374 (1122)
Q Consensus 297 ~~~--~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~~~ 374 (1122)
++| ++.+++|+|||+|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|+++
T Consensus 228 ~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~-------------~~LWGLl~~h~~~pr~~~~~ 294 (635)
T 4eho_A 228 LEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVG-------------GKLWGLVACHHYLPRFIHFE 294 (635)
T ss_dssp EESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHH
T ss_pred cccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEc-------------ceeeeeeeeecCCCCcCCHH
Confidence 997 467899999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcccccCCcchhhhccCCeEEEEECCeEEEec
Q 001215 375 LRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDS--PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLG 452 (1122)
Q Consensus 375 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~al~~~~~~~~~G 452 (1122)
+|.+|++|++++|++|++...++.+..++++.++++.+++++.+.. +.++..+.++++++++|||++|++++++|++|
T Consensus 295 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~~~G 374 (635)
T 4eho_A 295 LRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIG 374 (635)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEEEEe
Confidence 9999999999999999988888888888888899999999887653 56888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccCCCeEEeeccccccCCCCccccccccceEEEEEcCC--CCeEEEeccccceEEeecCCCCC
Q 001215 453 VTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGAKHD 530 (1122)
Q Consensus 453 ~~p~~~~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~--~~~l~wfR~~~~~~v~WaG~p~~ 530 (1122)
.||+++++.+|++|+...+ ...+|+|++|.. .||++..+++.+|||++++|+. ++|++|||+|+.++|+|||+|+|
T Consensus 375 ~~P~~~~i~~l~~wl~~~~-~~~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~p~~ 452 (635)
T 4eho_A 375 DVPSTQDVREIAGWLDRQP-RAAVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKK 452 (635)
T ss_dssp SCCCHHHHHHHHHHHTTSC-CCSSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSCCSC
T ss_pred CCCCHHHHHHHHHHHHhcC-CCcEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccCCCC
Confidence 9999999999999998774 457999999986 6999999999999999999986 69999999999999999999999
Q ss_pred CCC-CCCCCccccCchHHHHHHHhcccccccchhHHHHHHHHHHHHHhhhhhhhhcccceeeeccchhhhHHHHHHHHHH
Q 001215 531 SGG-KDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRII 609 (1122)
Q Consensus 531 ~~~-~~~~~~l~PR~SF~~w~e~v~g~s~pW~~~El~aa~~L~liL~~~l~~~~~~~~~~~~~~r~~~~~~~~~~eL~~~ 609 (1122)
+.. .+++.+|+||+||++|.|++++++.||...|++++..++..+....... +......+++.
T Consensus 453 ~~~~~~~~~~l~PR~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~----------------r~~~~~~a~e~ 516 (635)
T 4eho_A 453 PFTMGDTPADLSPRRSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQF----------------RAVRTLIAREQ 516 (635)
T ss_dssp CCCSCCSGGGCSHHHHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHT
T ss_pred ccccCCCcceecceeeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHH----------------hHHHHHHHHHH
Confidence 865 4457799999999999999999999999999999999976655544322 12223334444
Q ss_pred HHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEE
Q 001215 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLR 689 (1122)
Q Consensus 610 e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 689 (1122)
.+++.+++++++++|+++|.+|+|++||+++++++||+.++++|++...++++++.+.+...+..+..|+.. ..++.+
T Consensus 517 ~~~~~~lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~~g~~~-~~E~~~- 594 (635)
T 4eho_A 517 VPQASSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGRGW-RGEVLL- 594 (635)
T ss_dssp SSSHHHHHHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHHHCCCB-CCCCEE-
T ss_pred HHHHHHHHHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHHcCCcE-EEEEEE-
Confidence 567889999999999999999999999999999999999999999999999999999988888887777653 224433
Q ss_pred EeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHH
Q 001215 690 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVM 733 (1122)
Q Consensus 690 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE 733 (1122)
+++||+.+|+.++++|++|.+|+++|++++++|||++|++|
T Consensus 595 ---~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 595 ---RGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp ---CCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred ---EccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 37899999999999999999999999999999999999864
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=8.4e-117 Score=1040.85 Aligned_cols=490 Identities=32% Similarity=0.596 Sum_probs=444.1
Q ss_pred CCchhhHHH-HhhccCCCCCCccceEEEEecCCcEEEEecCChhhhhCCCCCCCCCcccccccccCcchhhccCchhHHH
Q 001215 59 VPSSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAA 137 (1122)
Q Consensus 59 ~~~~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 137 (1122)
.++-+++.| .+|||+||+|||||||||+|+++++|+++|+|+.++||++|++ ++|+++.++|+++.++.
T Consensus 7 ~~~~dl~~CdrEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~ 76 (520)
T 3zq5_A 7 LSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPED----------LLGRTLGEVFDSFQIDP 76 (520)
T ss_dssp CCHHHHHHHHTCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCHHH----------HTTSBHHHHCEESSCCC
T ss_pred CCCCCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHcCHHHHHH
Confidence 346679999 9999999999999999999999999999999999999998865 48999999999988888
Q ss_pred HHHHhccCCCCCCCcEEEeec--CCCc-ceEEEEeec-CceEEEEeeecCCCCCccchhhhhhHHHHHHHHHHHhhcCCC
Q 001215 138 LQKAANFGEVNLLNPILIHCK--TSGK-PFYAILHRI-DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPS 213 (1122)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~h~~-~~~~i~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1122)
+++++...+....+|+.+++. .+++ .|++++||+ ++.+||||||..+.+.. +..+.|+++.+++.||++ +
T Consensus 77 l~~~l~~~~~~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--s 150 (520)
T 3zq5_A 77 IQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--Q 150 (520)
T ss_dssp CSSCCCHHHHHHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--S
T ss_pred HHHHhcccccccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--c
Confidence 877665444455688888653 3456 799999999 99999999998654421 234689999999999999 7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCC
Q 001215 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAP 293 (1122)
Q Consensus 214 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~ 293 (1122)
+|++++|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||.+|++|+|+|++++
T Consensus 151 l~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~ 230 (520)
T 3zq5_A 151 ANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGV 230 (520)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecC--CCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCC
Q 001215 294 PVKVIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (1122)
Q Consensus 294 ~~~~~~~--~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~ 371 (1122)
|||++|. +.+++|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|
T Consensus 231 pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w 297 (520)
T 3zq5_A 231 AVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKD-------------GHLWGLIACHHQTPKVI 297 (520)
T ss_dssp CEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TEEEEEEEEEESSCCCC
T ss_pred ceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEEC-------------CEEEEEEEEecCCCcCC
Confidence 9999974 56889999999999999999999999999999999999999 99999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCC-CcccccCCcchhhhccCCeEEEEECCeEE
Q 001215 372 PFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQT-VLCDMLLRDS-PVGIVTQTPNVMDLVKCDGAALYYRGKLW 449 (1122)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~al~~~~~~~ 449 (1122)
++++|.+|+++++++|++|++...++....+++..+++. +++.|..++. +.++..+.+++|+|++|||+||+++|+++
T Consensus 298 ~~~er~~~e~la~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~ 377 (520)
T 3zq5_A 298 PFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLI 377 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEE
Confidence 999999999999999999998877776666666666554 5566766655 67888999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHhccCCCeEEeeccccccCCCCccccccccceEEEEEcCCCCeEEEeccccceEEeecCCCC
Q 001215 450 LLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKH 529 (1122)
Q Consensus 450 ~~G~~p~~~~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~~~~l~wfR~~~~~~v~WaG~p~ 529 (1122)
++|.||++++|++|++||..++.+ ++|+||+|++ .||++.++++.+|||||++|+.++||+|||+|+++||+|||+|+
T Consensus 378 ~~G~~P~~~~i~~l~~wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~ 455 (520)
T 3zq5_A 378 LVGETPDEKAVQYLLQWLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPN 455 (520)
T ss_dssp EEESCCCHHHHHHHHHHHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGG
T ss_pred EcCCCCCHHHHHHHHHHHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCC
Confidence 999999999999999999998665 6999999998 69999999999999999999999999999999999999999999
Q ss_pred CCCC--CCCCC-ccccCchHHHHHHHhcccccccchhHHHHHHHHHHHHHhhh
Q 001215 530 DSGG--KDGGR-KMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSL 579 (1122)
Q Consensus 530 ~~~~--~~~~~-~l~PR~SF~~w~e~v~g~s~pW~~~El~aa~~L~liL~~~l 579 (1122)
|++. .++|. +|+||+||++|+|+|+|+|.||+..|++++.+|+..+.+.+
T Consensus 456 k~~~~~~~~g~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vv 508 (520)
T 3zq5_A 456 HAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLI 508 (520)
T ss_dssp GCSEEEEETTEEEEECCCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcCCCCCCccccchhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9865 22565 89999999999999999999999999999999966555544
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=4.5e-114 Score=1016.07 Aligned_cols=478 Identities=27% Similarity=0.452 Sum_probs=432.6
Q ss_pred CCchhhHHH-HhhccCCCCCCccceEEEEecCCcEEEEecCChhhhhCCCCCCCCCcccccccccCcchhh-ccCchhHH
Q 001215 59 VPSSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRT-LFTSSGAA 136 (1122)
Q Consensus 59 ~~~~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~ 136 (1122)
.++-.++.| .+|||+||+|||||||||+|+ +++|+++|+|+.++||+++ + +|+++.+ +|+++.++
T Consensus 4 ~~~~dl~~C~~EPIh~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~--~----------lG~~l~~~ll~~~~~~ 70 (505)
T 3nhq_A 4 ITPVTLANCEDEPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA--S----------PGSYLTQEQVGPEVLR 70 (505)
T ss_dssp -CCCCTTTGGGCCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC--C----------TTCBCCHHHHHHHHHH
T ss_pred CCcCCccccccccccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc--c----------cCCchhhhhCCHHHHH
Confidence 445678899 999999999999999999999 7999999999999999977 3 8999999 99999999
Q ss_pred HHHHHhccCCCCCCCcEEEeecCCCcceEEEEeecCceEEEEeeecCCCCCccchhhhhhHHHHHHHHHHHhhcCCCCCH
Q 001215 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNI 216 (1122)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~i~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1122)
.+++++..... ..+|+.++ .+++.|++++||+++.+|+||||..+.+. +..+.++++.+++.+|++ +.|+
T Consensus 71 ~l~~~l~~~~~-~~~p~~~~--~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~~Ir~--sl~l 140 (505)
T 3nhq_A 71 MLEEGLTGNGP-WSNSVETR--IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNAQRIIAQVQL--HNDT 140 (505)
T ss_dssp HHHHHHSCSSC-CCCEEEEC--SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHhhcccc-cCCcEEEe--cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHHHHHHHHHHh--cCCH
Confidence 99999876654 67788884 56789999999999999999999865332 124789999999999999 6799
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCcce
Q 001215 217 SLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVK 296 (1122)
Q Consensus 217 ~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~~~ 296 (1122)
+++|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|++++|||
T Consensus 141 ~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Dv~~~~~~ 220 (505)
T 3nhq_A 141 ASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMR 220 (505)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHCSEEEESCTTCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHcCCEEEEcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC--CCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCChh
Q 001215 297 VIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFP 374 (1122)
Q Consensus 297 ~~~~--~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~~~ 374 (1122)
++|. +.+++|+||++|+|||+||||++||+||||+|||+|||+++ ++|||||+||||+||+|+++
T Consensus 221 l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~ 287 (505)
T 3nhq_A 221 VFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVG-------------GKLWGLFSCHHMSPKLIPYP 287 (505)
T ss_dssp EESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECS-------------SSEEEEEEEEESSCCCCCHH
T ss_pred cccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEEC-------------CEEEEEEEEecCCCCCCCHH
Confidence 9975 56789999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcccccCCcchhhhccCCeEEEEECCeEEEec
Q 001215 375 LRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD--SPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLG 452 (1122)
Q Consensus 375 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~g~al~~~~~~~~~G 452 (1122)
+|.+|+++++++|++|++....+.+..+++..++++.++.++.+. .+.++.+..+++++|++|||+|||++|+++++|
T Consensus 288 er~~~e~la~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~~~~~~G 367 (505)
T 3nhq_A 288 VRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIR 367 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETTEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECCeEEecC
Confidence 999999999999999998888888888888888888888887654 356788899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccCCCeEEeeccccccCCCCccc---cccccceEEEEEcCC--CCeEEEeccccceEEeecCC
Q 001215 453 VTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA---LGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGA 527 (1122)
Q Consensus 453 ~~p~~~~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~---~~~~~~g~l~~~i~~--~~~l~wfR~~~~~~v~WaG~ 527 (1122)
.||+++++++|++||..++.+ +|+|| .||++.+ +++.+|||||++|+. ++||+|||+|+++||+|||+
T Consensus 368 ~~P~~~~i~~l~~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~v~WaG~ 440 (505)
T 3nhq_A 368 GDFERQAGNVLQRLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGK 440 (505)
T ss_dssp SCCHHHHHHHHHHHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceEEEeCCC
Confidence 999999999999999988655 99999 5999998 899999999999986 79999999999999999999
Q ss_pred CCCCCC-CCCCCccccCchHHHHHHHhcccccccchhHHHHHHHHHHHHHhhh
Q 001215 528 KHDSGG-KDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSL 579 (1122)
Q Consensus 528 p~~~~~-~~~~~~l~PR~SF~~w~e~v~g~s~pW~~~El~aa~~L~liL~~~l 579 (1122)
|+|++. .++|.+|+||+||++|+|+|+|+|.||+..|++++..|+..+.+.+
T Consensus 441 P~k~~~~~~~~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~v~ 493 (505)
T 3nhq_A 441 PEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELC 493 (505)
T ss_dssp CCCCCCCCTTCGGGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCCccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999975 4568899999999999999999999999999999999976555543
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.8e-82 Score=703.84 Aligned_cols=303 Identities=33% Similarity=0.539 Sum_probs=277.7
Q ss_pred chhhHHH-HhhccCCCCCCccceEEEEecCCcEEEEecCChhhhhCCCCCCCCCcccccccccCcchhhccCchhHHHHH
Q 001215 61 SSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139 (1122)
Q Consensus 61 ~~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 139 (1122)
+-.++.| .+|||+||+|||||||||+| ++++|+++|+|+.++||+++++ ++|++++++|++...+.++
T Consensus 9 ~~~l~~C~rEpIh~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~~~----------~lG~~l~~ll~~~~~~~l~ 77 (327)
T 4e04_A 9 QPDLSTCDDEPIHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAIGA----------LIGRSAADVFDSETHNRLT 77 (327)
T ss_dssp ----CCGGGCCTTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCHHH----------HTTCBHHHHBCHHHHHHHH
T ss_pred CCCccccccccccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCChHh----------hcCCCHHHHcCHHHHHHHH
Confidence 4468899 99999999999999999999 8899999999999999998765 4899999999999999999
Q ss_pred HHhccCCCCCCCcEEEeec--CCCcceEEEEeecCceEEEEeeecCCCCCccchhhhhhHHHHHHHHHHHhhcCCCCCHH
Q 001215 140 KAANFGEVNLLNPILIHCK--TSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNIS 217 (1122)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~~~~i~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1122)
+++........+|+.+++. .+++.|++++||+++.+|+||||...... ...+.|+++.+++.||++ +.|++
T Consensus 78 ~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~rIr~--sldl~ 150 (327)
T 4e04_A 78 IALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDVR-----YPQAFFRSVRSAIRRLQA--AETLE 150 (327)
T ss_dssp HHHHSCSCCSEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCSS-----CCCCHHHHHHHHHHHHHH--CCSHH
T ss_pred HHhhccccccCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCccc-----chHHHHHHHHHHHHHHHh--cCCHH
Confidence 9988777667889988632 45779999999999999999999833221 122578999999999999 66999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCccee
Q 001215 218 LLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKV 297 (1122)
Q Consensus 218 ~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~~~~ 297 (1122)
++|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|++++|||+
T Consensus 151 ~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~l 230 (327)
T 4e04_A 151 SACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPV 230 (327)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCEEEEeCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC--CCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCChhh
Q 001215 298 IQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPL 375 (1122)
Q Consensus 298 ~~~--~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~~~~ 375 (1122)
+|. +.+++|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++
T Consensus 231 ~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~e 297 (327)
T 4e04_A 231 TPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRG-------------ERLWGLIACHHRKPNYVDLEV 297 (327)
T ss_dssp ESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHH
T ss_pred ccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEEC-------------CEEEEEEEEecCCCcCCCHHH
Confidence 974 66899999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001215 376 RYACEFLIQVFGVQVNKEV 394 (1122)
Q Consensus 376 r~~~~~l~~~~~~~~~~~~ 394 (1122)
|.+|++||+++|++|++..
T Consensus 298 r~~~e~la~~lsiaI~~~~ 316 (327)
T 4e04_A 298 RQACELVAQVLAWQIGVME 316 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997643
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=1.4e-82 Score=705.34 Aligned_cols=302 Identities=32% Similarity=0.491 Sum_probs=279.1
Q ss_pred CCchhhHHH-HhhccCCCCCCccceEEEEecCCcEEEEecCChhhhhCCCCCCCCCcccccccccCcchhhccCchhHHH
Q 001215 59 VPSSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAA 137 (1122)
Q Consensus 59 ~~~~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 137 (1122)
.++-+++.| .+|||+||+|||||||||+|+++++|+++|+|+.++||++|++ ++|+++.++|++ .++.
T Consensus 30 ~~~~dl~~Cd~EPIh~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~-~~~~ 98 (343)
T 3s7o_A 30 GPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV----------LRGQTLAALLPE-QWPA 98 (343)
T ss_dssp CCCCCTTTGGGCCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCHHH----------HTTCBHHHHSTT-THHH
T ss_pred CCCcCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHHhH-HHHH
Confidence 334578999 9999999999999999999999999999999999999998765 489999999999 9999
Q ss_pred HHHHhccCCCCCCC---cEEEeecCCCcceEEEEeecCceEEEEeeecCCCCCccchhhhhhHHHHHHHHHHHhhcCCCC
Q 001215 138 LQKAANFGEVNLLN---PILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSG 214 (1122)
Q Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~~~~i~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1122)
+++++...+....+ |+.+. +++.|++++||+++.+||||||..+.+ .+.++++.+++.||++ +.
T Consensus 99 l~~~l~~~~~~~~~~~~p~~~~---~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~~ll~~i~~rIr~--sl 165 (343)
T 3s7o_A 99 LQAALPPGCPDALQYRATLDWP---AAGHLSLTVHRVGELLILEFEPTEAWD--------STGPHALRNAMFALES--AP 165 (343)
T ss_dssp HHHHSCTTCCTTCCEEEEECCS---SSSEEEEEEEEETTEEEEEEEEEC------------CHHHHHHHHHHHHHH--CC
T ss_pred HHHHhccccccccccCCcEEEc---CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHHHHHHHHHHHHHh--cC
Confidence 99988766666666 77663 577899999999999999999986432 1678999999999999 67
Q ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCc
Q 001215 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294 (1122)
Q Consensus 215 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~ 294 (1122)
|++++|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.|
T Consensus 166 dl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ly~~~~vr~I~Di~~~p 245 (343)
T 3s7o_A 166 NLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAA 245 (343)
T ss_dssp SHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHHHHcCCEEEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecC--CCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCC
Q 001215 295 VKVIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVP 372 (1122)
Q Consensus 295 ~~~~~~--~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~ 372 (1122)
|+++|. +.+++|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+|||++||+|+
T Consensus 246 v~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~-------------~~LWGLL~~Hh~~pR~w~ 312 (343)
T 3s7o_A 246 VPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVG-------------GQLWGLIACHHQTPYVLP 312 (343)
T ss_dssp EEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TEEEEEEEEEESSCCCCC
T ss_pred cccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEEC-------------CEEEEEEEEEcCCCcCCC
Confidence 999974 66899999999999999999999999999999999999999 999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 001215 373 FPLRYACEFLIQVFGVQVNKEVELS 397 (1122)
Q Consensus 373 ~~~r~~~~~l~~~~~~~~~~~~~~~ 397 (1122)
+++|.+||+||+++|++|+++++++
T Consensus 313 ~~er~~~e~la~~lsiaI~~~~~~~ 337 (343)
T 3s7o_A 313 PDLRTTLESLGRLLSLQVQVKEALE 337 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998776543
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=5.9e-79 Score=685.09 Aligned_cols=303 Identities=33% Similarity=0.570 Sum_probs=277.9
Q ss_pred hhhHHH-HhhccCCCCCCccceEEEEecCCcEEEEecCChhhhhCCCCCCCCCcccccccccCcchhhccCchhHHHHHH
Q 001215 62 STVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQK 140 (1122)
Q Consensus 62 ~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 140 (1122)
-.++.| .+|||+||+|||||||||+|+++++|+++|+|+.++||++|++ ++|+++.++|++...+.+++
T Consensus 23 ~~l~~C~~EpIh~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~ 92 (337)
T 2ool_A 23 LDLTECDREPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPPAS----------LLNVPIAHYLTAASAARLTH 92 (337)
T ss_dssp ---CCGGGSCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCGGG----------GTTCBGGGGBCHHHHHHHHH
T ss_pred cChhhhccCcCcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCHHH----------HcCCCHHHHcCHHHHHHHHH
Confidence 367789 9999999999999999999999999999999999999999876 48999999999999999999
Q ss_pred HhccCCCCCCCcEEEeecC--CCcceEEEEeecCceEEEEeeecCCCCCccchhhhhhHHHHHHHHHHHhhcCCCCCHHH
Q 001215 141 AANFGEVNLLNPILIHCKT--SGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISL 218 (1122)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~~~~i~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1122)
++........+|+.+++.. .++.|++++||+++.+|+||||...... ..+.++++.+++.||++ ++|+++
T Consensus 93 ~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~~~Ir~--sl~l~~ 164 (337)
T 2ool_A 93 ALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAIRRLQT--AADLPT 164 (337)
T ss_dssp HHCC----CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHHHHHHT--CCSHHH
T ss_pred HHhcCCccccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHHHHHHh--cCCHHH
Confidence 9887777777898886643 3678999999999999999999865432 34689999999999999 779999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCcceee
Q 001215 219 LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298 (1122)
Q Consensus 219 ~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~~~~~ 298 (1122)
+|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.|||++
T Consensus 165 il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~~~ 244 (337)
T 2ool_A 165 ACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLV 244 (337)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEE
T ss_pred HHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEEEEEccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--CCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCChhhH
Q 001215 299 QD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLR 376 (1122)
Q Consensus 299 ~~--~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~~~~r 376 (1122)
|. +.+++||||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|
T Consensus 245 ~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~e~ 311 (337)
T 2ool_A 245 PDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRD-------------NRLWGMISCHNLTPRFVSYEVR 311 (337)
T ss_dssp SCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHH
T ss_pred cccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEEC-------------CeeEEEEEEecCCCCCCCHHHH
Confidence 75 66899999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001215 377 YACEFLIQVFGVQVNKEVE 395 (1122)
Q Consensus 377 ~~~~~l~~~~~~~~~~~~~ 395 (1122)
.+|++||+++|++|++.++
T Consensus 312 ~~~e~la~~l~iai~q~e~ 330 (337)
T 2ool_A 312 QACELIAQVLTWQIGVLEE 330 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976543
No 7
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-41 Score=385.76 Aligned_cols=339 Identities=21% Similarity=0.252 Sum_probs=266.5
Q ss_pred HHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHH
Q 001215 736 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 815 (1122)
Q Consensus 736 L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~ 815 (1122)
+++++++++.+++++++ +|+++|.+|+|++||+++++++||++++++|+++. .+.+++. ....
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~-----------~~~~~~~---~~~~ 65 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-----------DLPDFEE---IGSV 65 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBST-----------TSTTTTH---HHHH
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHH-----------HCcChhH---HHHH
Confidence 45667889999999999 89999999999999999999999999999999753 2222222 2233
Q ss_pred HHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCE-EEEEEeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001215 816 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKI-SGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYI 894 (1122)
Q Consensus 816 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i-~gvv~~l~DITerkq~e~~L~~~ae~~~~~k~~fLa~i 894 (1122)
+...+..+...... ...+..+|+.++..|+.+.+|.. .|++++++|||++++.++++++.++ ...+.++++.+
T Consensus 66 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~~~--~~~~~~~~~~i 139 (349)
T 3a0r_A 66 AESVFENKEPVFLN----FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRER--LSILGEMTARV 139 (349)
T ss_dssp HHHHHHHCCCCEEE----CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHHHH--HHHHHHHHHHH
T ss_pred HHHHHhcCCceeec----ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34444444332221 12223357778889999888875 5899999999999988877655433 23456788999
Q ss_pred HHhhhhHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEEeehHHHHHHHHHHh
Q 001215 895 RREIRKPLNGIAFMQNLMGTSD-LSEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGEFNLGEALDAVMTQV 972 (1122)
Q Consensus 895 sHELrnPLt~I~g~~~lL~~~~-l~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~~dL~~vi~~v~~~~ 972 (1122)
+|||||||++|.++++++.... .++...++++.+...++++..+++++ ++++. ...+...++++.+++++++..+
T Consensus 140 ~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 216 (349)
T 3a0r_A 140 AHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLNELIREVYVLF 216 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHHHHHHHHHHHH
Confidence 9999999999999999987653 33456789999999999999999997 99884 3467789999999999999999
Q ss_pred ccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEc
Q 001215 973 MIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITH 1052 (1122)
Q Consensus 973 ~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D 1052 (1122)
...+..+++.+.++++++.+ .+.+|+..|.|||.|||.||+||++ +++.|.|++...++ .+.|+|+|
T Consensus 217 ~~~~~~~~i~~~~~~~~~~~--~~~~d~~~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~---------~~~i~v~D 283 (349)
T 3a0r_A 217 EEKIRKMNIDFCFETDNEDL--RVEADRTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYT---------KVRVSVWN 283 (349)
T ss_dssp HHHHTTTTCCCEEEESCSCC--EEEECHHHHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETT---------EEEEEEEE
T ss_pred HHHHHHcCcEEEEecCCCCc--eEEeCHHHHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCC---------EEEEEEEE
Confidence 99998999999888876644 7899999999999999999999997 46699999988777 89999999
Q ss_pred CCCCCChhhhhhhcCCCC--CCCCccchHHHHHHHHH-HcCcEEEEEecCCceEEEEEEEecCCCC
Q 001215 1053 PAPGIPEKLIHDMFYHSQ--GASREGLGLYISQKLVK-LMNGTVQYIREAERSSFLILIEFPLAHQ 1115 (1122)
Q Consensus 1053 ~G~GI~~e~~~~iF~~f~--~~~GtGLGL~I~r~ive-~~gG~I~v~s~~gg~tF~~~l~LP~~~~ 1115 (1122)
||+|||++.++++|+||. +.+|+||||+|||++++ .|||++++++.++|++ |++.||..+.
T Consensus 284 ~G~Gi~~~~~~~if~~f~~~~~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~Gt~--f~i~lP~~~~ 347 (349)
T 3a0r_A 284 SGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVV--FIFEIPKTPE 347 (349)
T ss_dssp ESCCCCGGGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEECSSEEE--EEEEEESCTT
T ss_pred CCCCCChHHHhhcCCCCccCCCCCccchHHHHHHHHHHhCCCEEEEEeCCCcEE--EEEEecCCCC
Confidence 999999999999999983 55799999999999999 7999999999876554 5556676543
No 8
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=8.7e-33 Score=304.73 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=196.7
Q ss_pred eecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHHH
Q 001215 863 LHVASPELQYALQVQRISEQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTS---DLSEEQKQLLKTSVLCQEQLTNIV 939 (1122)
Q Consensus 863 l~DITerkq~e~~L~~~ae~~~~~k~~fLa~isHELrnPLt~I~g~~~lL~~~---~l~~~~~~~L~~i~~~~~rl~~iI 939 (1122)
+.|+|++++.++ .++....+.+|++.++|||||||++|.++++++... ...+..+++++.+...+++|..++
T Consensus 1 ~~~it~~~~~~~-----l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li 75 (258)
T 2c2a_A 1 MENVTESKELER-----LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLL 75 (258)
T ss_dssp CCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHH-----HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888776653 233445567899999999999999999999988543 223456889999999999999999
Q ss_pred hhh-cccccccccceeeeEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcC
Q 001215 940 DDT-DIESIEECYMVLKSGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFT 1018 (1122)
Q Consensus 940 ~dL-d~srie~g~~~l~~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t 1018 (1122)
+++ ++++++.+...+..+.+++.+++++++..+...+..+++.+.++.+...+ ..+.+|+.+|.|||.|||.||+||+
T Consensus 76 ~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~~l~~il~NLl~NAik~~ 154 (258)
T 2c2a_A 76 NELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCP-VEAYIDPTRIRQVLLNLLNNGVKYS 154 (258)
T ss_dssp HHHHHHHHHHHTCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSC-CEEEECHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCccCccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCC-ceEEeCHHHHHHHHHHHHHHHHhcC
Confidence 997 99999998888999999999999999999999998999998877653322 3688999999999999999999999
Q ss_pred CCC-CCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCCC--------CCCccchHHHHHHHHHHc
Q 001215 1019 PAF-EGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQG--------ASREGLGLYISQKLVKLM 1089 (1122)
Q Consensus 1019 ~~~-~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~--------~~GtGLGL~I~r~ive~~ 1089 (1122)
+.. .++.|.|.+...++ .+.|+|.|+|+|||++.++++|+||.. ..|+||||+|||++++.|
T Consensus 155 ~~~~~~~~i~i~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~ 225 (258)
T 2c2a_A 155 KKDAPDKYVKVILDEKDG---------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELH 225 (258)
T ss_dssp CTTCTTCEEEEEEEEETT---------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHT
T ss_pred cCCCCceeEEEEEecCCC---------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHc
Confidence 742 23468888877666 899999999999999999999999842 248999999999999999
Q ss_pred CcEEEEEecCCceEEEEEEEecCCCCC
Q 001215 1090 NGTVQYIREAERSSFLILIEFPLAHQK 1116 (1122)
Q Consensus 1090 gG~I~v~s~~gg~tF~~~l~LP~~~~~ 1116 (1122)
||+|++.|.+++|| +|++.||.....
T Consensus 226 gG~i~v~s~~~~Gt-~f~i~lP~~~~~ 251 (258)
T 2c2a_A 226 GGRIWVESEVGKGS-RFFVWIPKDRAG 251 (258)
T ss_dssp TCEEEEEEETTTEE-EEEEEEECCC--
T ss_pred CCEEEEEecCCCCc-EEEEEeeCCCCC
Confidence 99999999988766 677777876543
No 9
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=1.5e-33 Score=290.60 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=139.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCe
Q 001215 205 ISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (1122)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~ 284 (1122)
..+|++ +.|++++++++|++||+++|+||||||+|++||+|+||||++.++++|++|.+||++|||.+++++|.+|++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 467888 779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEee
Q 001215 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCH 364 (1122)
Q Consensus 285 r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h 364 (1122)
++|+|++.. +++|||.+||++|||+|+|++||+++ |+|||+|+||
T Consensus 81 ~~I~Dv~~~----------------------~~~~~~~~~l~~~~v~S~L~vPi~~~-------------~~l~GlL~~~ 125 (171)
T 4glq_A 81 QATTDIFKA----------------------GLTECHLNQLRPLKVRANLVVPMVID-------------DQLFGLLIAH 125 (171)
T ss_dssp EEESCGGGT----------------------TCCHHHHHHHGGGTEEEEEEEEEEET-------------TEEEEEEEEE
T ss_pred EEEcCcCcC----------------------CCCHHHHHHHHhcCCcEEEEEEEEEC-------------CEEEEEEEEE
Confidence 999996542 56899999999999999999999999 9999999999
Q ss_pred cC-CCCCCChhhHHHHHHHHHHHHHHHHHH
Q 001215 365 HT-SPRFVPFPLRYACEFLIQVFGVQVNKE 393 (1122)
Q Consensus 365 ~~-~pr~~~~~~r~~~~~l~~~~~~~~~~~ 393 (1122)
|| +||.|+..+...++.+|..+++.|.+.
T Consensus 126 ~~~~~r~w~~~ei~ll~~lA~ql~iAi~qa 155 (171)
T 4glq_A 126 QASEPRQWQEIEIDQFSELASTGSLVLERL 155 (171)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98 599999999999999999988888543
No 10
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.97 E-value=4e-30 Score=284.71 Aligned_cols=224 Identities=22% Similarity=0.319 Sum_probs=198.6
Q ss_pred HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEE
Q 001215 881 EQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTS-DLSEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGE 958 (1122)
Q Consensus 881 e~~~~~k~~fLa~isHELrnPLt~I~g~~~lL~~~-~l~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~ 958 (1122)
++....+.+|++.++|||||||++|.++++++... ..+++.+++++.+.+..+++..+++++ ++++++.+.......+
T Consensus 34 ~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 113 (268)
T 4ew8_A 34 AEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIED 113 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 33445566889999999999999999999999764 467888999999999999999999997 9999999988999999
Q ss_pred eehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccC
Q 001215 959 FNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIG 1038 (1122)
Q Consensus 959 ~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~ 1038 (1122)
+++.+++++++..+...+..+++.+.++++++.+ .+.+|+..|.+||.|||.||+||++ .++.|.|++...++
T Consensus 114 ~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~--~v~~d~~~l~~il~nLl~NA~~~~~--~~~~I~i~~~~~~~--- 186 (268)
T 4ew8_A 114 IRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG--LIRGDGKRLAQTLDHLVENALRQTP--PGGRVTLSARRALG--- 186 (268)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC--EEEECHHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEECSS---
T ss_pred ccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc--eEecCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEecCC---
Confidence 9999999999999999999999999999998875 6899999999999999999999998 45699999988777
Q ss_pred ccceeEEEEEEEEcCCCCCChhhhhhhcCCC--CCCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecCCCCC
Q 001215 1039 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHS--QGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQK 1116 (1122)
Q Consensus 1039 ~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f--~~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~~~ 1116 (1122)
.+.|+|+|||+||+++.++++|+|| .+.+|+||||++|+++++.|||+|++.+.+++|| +|++.||.....
T Consensus 187 ------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt-~~~i~lP~~~~~ 259 (268)
T 4ew8_A 187 ------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLALVKALVELHGGWVALESEPGNGS-TFTCHLPETQQP 259 (268)
T ss_dssp ------EEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCE-EEEEEEECCC--
T ss_pred ------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCE-EEEEEecCCCCC
Confidence 8999999999999999999999998 4667999999999999999999999999988665 667777776554
Q ss_pred CC
Q 001215 1117 DA 1118 (1122)
Q Consensus 1117 ~~ 1118 (1122)
..
T Consensus 260 ~~ 261 (268)
T 4ew8_A 260 GA 261 (268)
T ss_dssp --
T ss_pred CC
Confidence 43
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.5e-30 Score=285.22 Aligned_cols=226 Identities=10% Similarity=0.067 Sum_probs=156.6
Q ss_pred CCCEEEEEEeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 001215 853 EGKISGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQ 932 (1122)
Q Consensus 853 ~G~i~gvv~~l~DITerkq~e~~L~~~ae~~~~~k~~fLa~isHELrnPLt~I~g~~~lL~~~~l~~~~~~~L~~i~~~~ 932 (1122)
.|....+...++|+|.++..+.+++... .+. -+.+.|||||||||++|.+++++|++...++...++++.|.+.+
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~~-laa----llas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~ 91 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGPD-FAA----MLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSA 91 (247)
T ss_dssp --------------------------CH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHH-HHH----HHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4555557788899998877766553321 111 14568999999999999999999998887888889999999999
Q ss_pred HHHHHHHhhhcccccccccceeeeEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHH
Q 001215 933 EQLTNIVDDTDIESIEECYMVLKSGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLT 1012 (1122)
Q Consensus 933 ~rl~~iI~dLd~srie~g~~~l~~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~ 1012 (1122)
+++..+++.+ ++..+. ......+++.++...+ ...+..+++++.+++++.. .+..+.|++.||+.
T Consensus 92 ~~~~~ll~~~---r~~~~~-~~~~~~~~~~~l~~~~----~~~~~~~~i~l~~~~~~~~-------~~~~~~qvl~NLl~ 156 (247)
T 4fpp_A 92 RKLADLLQFT---RVAFGA-SASAENFDSRELEKLA----QGVFAHVRPTLDWQIEPQA-------MNKPSSRAVLNIAQ 156 (247)
T ss_dssp HHHHHHHHHH---HHHTTC-CSSCCCEEHHHHHHHH----HHHHTTSSSEEEECCCSCE-------ECHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHhhcc-ccccccccHHHHHHHH----HHHHHhhhhhccccccchh-------hhHHHHHHHHHHHH
Confidence 9988887654 222221 2234567777654433 3344577899988887753 25678999999999
Q ss_pred HHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCC--CChhhhhhhcCCCC--CCCCccchHHHHHHHHHH
Q 001215 1013 NALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPG--IPEKLIHDMFYHSQ--GASREGLGLYISQKLVKL 1088 (1122)
Q Consensus 1013 NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~G--I~~e~~~~iF~~f~--~~~GtGLGL~I~r~ive~ 1088 (1122)
||+||++ .|+.|+|++...++ .+.|+|+|+|+| ||++..+++|++|. +.+|+||||+|||+||+.
T Consensus 157 NA~~a~~--~gg~I~v~~~~~~~---------~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~G~GLGLai~~~iv~~ 225 (247)
T 4fpp_A 157 IAASALP--AGGVATVKGVAADG---------RFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGPWVQAAYLNALVRA 225 (247)
T ss_dssp HHHTTCT--TCCEEEEEEEEETT---------EEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCeEEEEEEEECC---------EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHH
Confidence 9999999 57799999988877 788888888877 77899999999983 556999999999999999
Q ss_pred cCcEEEEEecCCceEEEEEEEec
Q 001215 1089 MNGTVQYIREAERSSFLILIEFP 1111 (1122)
Q Consensus 1089 ~gG~I~v~s~~gg~tF~~~l~LP 1111 (1122)
|||+|+++|.++|++|+| .||
T Consensus 226 hGG~i~v~s~~~G~~f~v--~LP 246 (247)
T 4fpp_A 226 AGGQIAVEIGEDRASIAA--WVP 246 (247)
T ss_dssp TTCEEEEEEETTEEEEEE--EEE
T ss_pred cCCEEEEEEcCCEEEEEE--Eec
Confidence 999999999987666555 556
No 12
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.96 E-value=2.9e-30 Score=277.00 Aligned_cols=212 Identities=18% Similarity=0.277 Sum_probs=134.8
Q ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEEeehHHH
Q 001215 887 SLNKLEYIRREIRKPLNGIAFMQNLMGTSDL-SEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGEFNLGEA 964 (1122)
Q Consensus 887 k~~fLa~isHELrnPLt~I~g~~~lL~~~~l-~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~~dL~~v 964 (1122)
+.+|++.++|||||||++|.++++++..... .+..+++++.+.++.+++..+++++ ++++++.+........+++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 4578899999999999999999998866543 3445778888888999999999997 9999998888889999999999
Q ss_pred HHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeE
Q 001215 965 LDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIV 1044 (1122)
Q Consensus 965 i~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~ 1044 (1122)
+++++..+...+..+++.+.++++++.+ .+.+|+..|.|||.|||.||+||++ .++.|.|++. .+
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~--~~~~i~i~~~--~~--------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI--KRTGQPLLLSLLVRNLLDNAVRYSP--QGSVVDVTLN--AD--------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC--EEEECHHHHHHHHHHHHHHHHHTCC--TTCEEEEEEC--SS---------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce--EEecCHHHHHHHHHHHHHHHHHcCC--CCCeEEEEEc--cC---------
Confidence 9999999999999999999999888754 7889999999999999999999998 4667777753 33
Q ss_pred EEEEEEEcCCCCCChhhhhhhcCCCC-----CCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecCCCCC
Q 001215 1045 HLEFRITHPAPGIPEKLIHDMFYHSQ-----GASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQK 1116 (1122)
Q Consensus 1045 ~v~~~V~D~G~GI~~e~~~~iF~~f~-----~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~~~ 1116 (1122)
. |.|.|||+|||++.++++|+||. ..+|+||||+|||++++.|||+|+++|.+++|| +|++.||..+.+
T Consensus 147 ~--i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt-~v~~~~P~~~~~ 220 (222)
T 3jz3_A 147 N--FIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGF-EAKVSWLEHHHH 220 (222)
T ss_dssp E--EEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBCTTSSB-EEEEECCCC---
T ss_pred e--EEEEECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcE-EEEEeecCCCCC
Confidence 2 88999999999999999999983 334899999999999999999999999999876 788888876653
No 13
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.96 E-value=3.7e-28 Score=284.18 Aligned_cols=218 Identities=11% Similarity=0.128 Sum_probs=188.6
Q ss_pred HHHHHhHHHHHHHhhhhHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEEeeh
Q 001215 884 AANSLNKLEYIRREIRKPLNGIA-FMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGEFNL 961 (1122)
Q Consensus 884 ~~~k~~fLa~isHELrnPLt~I~-g~~~lL~~~~l~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~~dL 961 (1122)
...+..+++.++||+||||+.|. ++.+++.....+++.+++++.+..+..+|..+++++ ++++++.+...+..+.+++
T Consensus 118 ~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~l 197 (388)
T 1gkz_A 118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSP 197 (388)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEECH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCCH
Confidence 34566789999999999999998 888877766667888999999999999999999996 9999999999999999999
Q ss_pred HHHHHHHHHHhccccccC-----CcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCC--------eEEE
Q 001215 962 GEALDAVMTQVMIPSREH-----QVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGS--------SIAF 1028 (1122)
Q Consensus 962 ~~vi~~v~~~~~~~~~~~-----~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~--------~I~I 1028 (1122)
.+++++++..+...+..+ ++.+..+.+. .+.+|+.+|.|||.|||.||+||++. ++ .|.|
T Consensus 198 ~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~-----~~~~~~~~L~~il~NLl~NAik~~~~--~~~~~~~~~~~I~I 270 (388)
T 1gkz_A 198 KKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA-----RFPFIPMPLDYILPELLKNAMRATME--SHLDTPYNVPDVVI 270 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC-----CEEECCHHHHHHHHHHHHHHHHHHHH--TCTTCTTSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC-----ceeecHHHHHHHHHHHHHHHHHHhhc--cccCCCCCCCCEEE
Confidence 999999999999988877 5666555443 57789999999999999999999973 32 8999
Q ss_pred EEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--CC--------------------------CCccchHH
Q 001215 1029 RVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--GA--------------------------SREGLGLY 1080 (1122)
Q Consensus 1029 ~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~~--------------------------~GtGLGL~ 1080 (1122)
++...++ .+.|+|+|+|+|||++.+++||++|. +. .|+||||+
T Consensus 271 ~~~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~ 341 (388)
T 1gkz_A 271 TIANNDV---------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLP 341 (388)
T ss_dssp EEEECSS---------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHH
T ss_pred EEEeCCC---------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHH
Confidence 9988777 89999999999999999999999973 11 59999999
Q ss_pred HHHHHHHHcCcEEEEEecCCceEEEEEEEecCCCCCCC
Q 001215 1081 ISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDA 1118 (1122)
Q Consensus 1081 I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~~~~~ 1118 (1122)
|||.+++.|||+|++.|.+|+|| +|+|.||.......
T Consensus 342 i~r~i~~~~gG~i~v~s~~g~Gt-~f~i~LP~~~~~~~ 378 (388)
T 1gkz_A 342 TSRAYAEYLGGSLQLQSLQGIGT-DVYLRLRHIDGREE 378 (388)
T ss_dssp HHHHHHHHTTCEEEEEEETTTEE-EEEEEEECSSSCCC
T ss_pred HHHHHHHHhCCEEEEEecCCCcE-EEEEEecCCCCCCC
Confidence 99999999999999999988766 67777787654443
No 14
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.96 E-value=7.5e-28 Score=262.11 Aligned_cols=210 Identities=18% Similarity=0.295 Sum_probs=180.7
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEEeehHH
Q 001215 886 NSLNKLEYIRREIRKPLNGIAFMQNLMGTSDL-SEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGEFNLGE 963 (1122)
Q Consensus 886 ~k~~fLa~isHELrnPLt~I~g~~~lL~~~~l-~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~~dL~~ 963 (1122)
.+.++++.++|||||||++|.++++++..... .++.+++++.+.+..+++..+++++ ++++...+ ....+++..
T Consensus 13 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~~ 88 (244)
T 3d36_A 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKL 88 (244)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHHH
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHHH
Confidence 34567789999999999999999999987655 4567889999999999999999997 88886543 578999999
Q ss_pred HHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCcccee
Q 001215 964 ALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHI 1043 (1122)
Q Consensus 964 vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~ 1043 (1122)
++++++..+...+..+++.+.+++++ ..+.+|+..|.+||.|||.||++|++ .++.|.|++...++
T Consensus 89 ~l~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~d~~~l~~il~nLl~NA~~~~~--~~~~i~i~~~~~~~-------- 154 (244)
T 3d36_A 89 EIERVIDILRPLANMSCVDIQATLAP----FSVIGEREKFRQCLLNVMKNAIEAMP--NGGTLQVYVSIDNG-------- 154 (244)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEECCC----CEEEECHHHHHHHHHHHHHHHHHTCT--TCEEEEEEEEEETT--------
T ss_pred HHHHHHHHHHHHHHhcCeEEeccCCC----ceEEeCHHHHHHHHHHHHHHHHHhcc--CCCeEEEEEEEeCC--------
Confidence 99999999999999999999888765 27899999999999999999999997 46699999988777
Q ss_pred EEEEEEEEcCCCCCChhhhhhhcCCCCC---CCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecCCCC
Q 001215 1044 VHLEFRITHPAPGIPEKLIHDMFYHSQG---ASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 1115 (1122)
Q Consensus 1044 ~~v~~~V~D~G~GI~~e~~~~iF~~f~~---~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~~ 1115 (1122)
.+.|+|.|+|+||+++.++++|+||.. ..|+|+||++|+++++.|||+|++.+.+++|+ +|++.||+...
T Consensus 155 -~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~-~~~i~lP~~~~ 227 (244)
T 3d36_A 155 -RVLIRIADTGVGMTKEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGT-TVSIYLPLASS 227 (244)
T ss_dssp -EEEEEEEECSSCCCHHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEE-EEEEEEECCC-
T ss_pred -EEEEEEEecCCCCCHHHHHHHhcccccCCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCcE-EEEEEecCCCC
Confidence 899999999999999999999999843 45899999999999999999999999977654 56666676543
No 15
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.95 E-value=2.6e-27 Score=277.57 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=170.3
Q ss_pred HhHHHHHHHhhhh-----HHHHHHHHHHHhcCCCCCH----HHHHHHH--HHHHHHHHHHHHHhhh-ccccccc-cccee
Q 001215 888 LNKLEYIRREIRK-----PLNGIAFMQNLMGTSDLSE----EQKQLLK--TSVLCQEQLTNIVDDT-DIESIEE-CYMVL 954 (1122)
Q Consensus 888 ~~fLa~isHELrn-----PLt~I~g~~~lL~~~~l~~----~~~~~L~--~i~~~~~rl~~iI~dL-d~srie~-g~~~l 954 (1122)
.++++.++||||| ||+.|.|+++++.....++ +..++++ .+...+.+| +++++ ++++.+. +....
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~ 173 (394)
T 2btz_A 96 LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPK 173 (394)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCc
Confidence 3478889999999 9999999999987654443 3345777 477788888 99996 9999877 56677
Q ss_pred ee----EEeehHHHHHHHHHHhcccccc-----CCcEEEeec---CCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCC
Q 001215 955 KS----GEFNLGEALDAVMTQVMIPSRE-----HQVQFIRDL---PAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFE 1022 (1122)
Q Consensus 955 ~~----~~~dL~~vi~~v~~~~~~~~~~-----~~i~l~~~~---~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~ 1022 (1122)
.. +.+++.+++++++..+...+.. +++++.+.. ++. ...+.+|+..|.|||.|||.||+||++...
T Consensus 174 ~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~~~ 251 (394)
T 2btz_A 174 HIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ--PIHMVYVPSHLYHMLFELFKNAMRATVESH 251 (394)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCC--CeEEEecHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77 9999999999999999988876 889998743 332 237999999999999999999999998411
Q ss_pred -----CCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--CC-----------CCccchHHHHHH
Q 001215 1023 -----GSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--GA-----------SREGLGLYISQK 1084 (1122)
Q Consensus 1023 -----g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~~-----------~GtGLGL~I~r~ 1084 (1122)
.+.|.|++...++ .+.|+|+|+|+|||++.+++||+||. +. .|+||||+|||.
T Consensus 252 ~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~ 322 (394)
T 2btz_A 252 ESSLILPPIKVMVALGEE---------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRL 322 (394)
T ss_dssp TTCSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHH
T ss_pred ccCCCCCCEEEEEEeCCC---------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHH
Confidence 1269999988777 89999999999999999999999983 22 499999999999
Q ss_pred HHHHcCcEEEEEecCCceEEEEEEEecCCCC
Q 001215 1085 LVKLMNGTVQYIREAERSSFLILIEFPLAHQ 1115 (1122)
Q Consensus 1085 ive~~gG~I~v~s~~gg~tF~~~l~LP~~~~ 1115 (1122)
+++.|||+|++.|.+|+|| +|+|.||....
T Consensus 323 i~~~~gG~i~v~s~~g~Gt-~f~i~lP~~~~ 352 (394)
T 2btz_A 323 YAKYFQGDLQLFSMEGFGT-DAVIYLKALST 352 (394)
T ss_dssp HHHHTTCEEEEEEETTTEE-EEEEEEESSTT
T ss_pred HHHHhCCEEEEEecCCCce-EEEEEecCCCC
Confidence 9999999999999988766 67777787653
No 16
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.95 E-value=1.1e-27 Score=247.03 Aligned_cols=164 Identities=33% Similarity=0.549 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCC-CCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCc
Q 001215 216 ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP-DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294 (1122)
Q Consensus 216 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~-~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~ 294 (1122)
++++++++++++++++|+|||+||+|++|++|++++|+..+ .++|++|.+||++|||.+++.+|.++++|+|.|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 47899999999999999999999999999999999999987 47999999999999999999999999999999999988
Q ss_pred ceeec--CCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCC
Q 001215 295 VKVIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVP 372 (1122)
Q Consensus 295 ~~~~~--~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~ 372 (1122)
+..+| ...+++|+.++.+..++.+|||.+|++++|++|.|++||+.+ |++||+|.||||.||.|+
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~-------------~~l~G~l~~~~~~~~~~~ 147 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH-------------QELWGLLVSHHAEPRPYS 147 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCS-------------SCCCEEEEEEECSCCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEEC-------------CEEEEEEEEEeCCCCCCC
Confidence 88775 357899999999999999999999999999999999999988 999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001215 373 FPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 373 ~~~r~~~~~l~~~~~~~~~~ 392 (1122)
.+....++.++..+|+.|.+
T Consensus 148 ~~e~~~l~~la~~~a~ai~~ 167 (172)
T 2k2n_A 148 QEELQVVQLLADQVSIAIAQ 167 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888754
No 17
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.95 E-value=5.4e-27 Score=274.76 Aligned_cols=212 Identities=13% Similarity=0.150 Sum_probs=176.9
Q ss_pred HhHHHHHHHhhhh-----HHHHHHHHHHHhcCCC----CCHHHHHHHH--HHHHHHHHHHHHHhhh-c-cccccccccee
Q 001215 888 LNKLEYIRREIRK-----PLNGIAFMQNLMGTSD----LSEEQKQLLK--TSVLCQEQLTNIVDDT-D-IESIEECYMVL 954 (1122)
Q Consensus 888 ~~fLa~isHELrn-----PLt~I~g~~~lL~~~~----l~~~~~~~L~--~i~~~~~rl~~iI~dL-d-~srie~g~~~l 954 (1122)
.++++.++||||| ||+.|.|++++++... ..++.+++++ .+.+.+.+| +++++ + +++. .+...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3567889999999 8999999999887542 4566788888 688889999 88885 6 7776 666667
Q ss_pred ee----EEeehHHHHHHHHHHhccccccC-----CcEEEeec---CCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCC
Q 001215 955 KS----GEFNLGEALDAVMTQVMIPSREH-----QVQFIRDL---PAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFE 1022 (1122)
Q Consensus 955 ~~----~~~dL~~vi~~v~~~~~~~~~~~-----~i~l~~~~---~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~ 1022 (1122)
.. +.+++.+++++++..+...+..+ ++++.+++ ++. ...+.+|+..|.|||.|||.||+||++...
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~~~ 250 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQ--PIHIVYVPSHLHHMLFELFKNAMRATVEHQ 250 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67 89999999999999999998887 99998843 232 237999999999999999999999997311
Q ss_pred -----CCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCCC--C------------CCccchHHHHH
Q 001215 1023 -----GSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQG--A------------SREGLGLYISQ 1083 (1122)
Q Consensus 1023 -----g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~--~------------~GtGLGL~I~r 1083 (1122)
.+.|.|++...++ .+.|+|+|+|+|||++.+++||++|.. . .|+||||+|||
T Consensus 251 ~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~ 321 (394)
T 2e0a_A 251 ENQPSLTPIEVIVVLGKE---------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISR 321 (394)
T ss_dssp TTSSSCCCEEEEEEECSS---------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHH
T ss_pred cccCCCCCEEEEEEeCCC---------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHH
Confidence 1269999988777 899999999999999999999999832 1 49999999999
Q ss_pred HHHHHcCcEEEEEecCCceEEEEEEEecCCC
Q 001215 1084 KLVKLMNGTVQYIREAERSSFLILIEFPLAH 1114 (1122)
Q Consensus 1084 ~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~ 1114 (1122)
.+++.|||+|++.|.+|+|| +|+|.||...
T Consensus 322 ~i~~~~gG~i~v~s~~g~Gt-~f~i~lP~~~ 351 (394)
T 2e0a_A 322 LYAKYFQGDLNLYSLSGYGT-DAIIYLKALS 351 (394)
T ss_dssp HHHHHTTCEEEEEEETTTEE-EEEEEEESSG
T ss_pred HHHHHhCCEEEEEecCCccE-EEEEEeCCCC
Confidence 99999999999999988765 6677777754
No 18
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.95 E-value=6.8e-27 Score=275.09 Aligned_cols=210 Identities=12% Similarity=0.084 Sum_probs=172.5
Q ss_pred hHHHHHHHhhhh-----HHHHHHHHHHHhcCCCCC----HHHHHHHHH--HHHHHHHHHHHHhhh-ccccccc----c--
Q 001215 889 NKLEYIRREIRK-----PLNGIAFMQNLMGTSDLS----EEQKQLLKT--SVLCQEQLTNIVDDT-DIESIEE----C-- 950 (1122)
Q Consensus 889 ~fLa~isHELrn-----PLt~I~g~~~lL~~~~l~----~~~~~~L~~--i~~~~~rl~~iI~dL-d~srie~----g-- 950 (1122)
+++..++||||| ||+.|.|++++++....+ ++.+++++. +.....+| +++++ ++++.+. +
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~ 184 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHR 184 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCc
Confidence 345556699999 999999999988764332 345777887 77778888 99996 9999865 3
Q ss_pred -cceeeeEEeehHHHHHHHHHHhccccccC-----CcEEEeec---CCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCC
Q 001215 951 -YMVLKSGEFNLGEALDAVMTQVMIPSREH-----QVQFIRDL---PAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAF 1021 (1122)
Q Consensus 951 -~~~l~~~~~dL~~vi~~v~~~~~~~~~~~-----~i~l~~~~---~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~ 1021 (1122)
......+.+++.+++++++..+...+..+ ++++.+++ ++. ...+.+|+..|.|||.|||.||+||++.
T Consensus 185 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~t~~- 261 (407)
T 2q8g_A 185 KHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ--PIQVVYVPSHLYHMVFELFKNAMRATME- 261 (407)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHhh-
Confidence 56678899999999999999999988877 89998876 222 2379999999999999999999999973
Q ss_pred CCC-------eEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC---CC-----------CCccchHH
Q 001215 1022 EGS-------SIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ---GA-----------SREGLGLY 1080 (1122)
Q Consensus 1022 ~g~-------~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~---~~-----------~GtGLGL~ 1080 (1122)
++ .|.|++...++ .+.|+|+|+|+|||++.+++||++|. .. .|+||||+
T Consensus 262 -~~~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~ 331 (407)
T 2q8g_A 262 -HHANRGVYPPIQVHVTLGNE---------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLP 331 (407)
T ss_dssp -HSTTTCCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHH
T ss_pred -ccccCCCCCCEEEEEEeCCC---------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHH
Confidence 33 79999988777 89999999999999999999999983 11 59999999
Q ss_pred HHHHHHHHcCcEEEEEecCCceEEEEEEEecCCC
Q 001215 1081 ISQKLVKLMNGTVQYIREAERSSFLILIEFPLAH 1114 (1122)
Q Consensus 1081 I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~ 1114 (1122)
|||.+++.|||+|++.|.+|+|| +|+|.||...
T Consensus 332 Ivr~i~~~~gG~i~v~s~~g~Gt-~f~i~LP~~~ 364 (407)
T 2q8g_A 332 ISRLYAQYFQGDLKLYSLEGYGT-DAVIYIKALS 364 (407)
T ss_dssp HHHHHHHHTTCEEEEEEETTTEE-EEEEEEESSG
T ss_pred HHHHHHHHhCCEEEEEEcCCCce-EEEEEECCCC
Confidence 99999999999999999988766 6777778754
No 19
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.94 E-value=3.2e-25 Score=239.11 Aligned_cols=221 Identities=14% Similarity=0.060 Sum_probs=186.8
Q ss_pred cEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCCCeEEE
Q 001215 623 PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETSGPVIL 702 (1122)
Q Consensus 623 gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~~~~v 702 (1122)
.|+++|.+|+|+++|+++++++||+++|++|+++..+.++.........+...+..+.....++..+ ++||..+|+
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~dG~~~~~ 76 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNR----RKDGTRYWV 76 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEE----CSSSCEEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEE----cCCCCEEee
Confidence 4789999999999999999999999999999999888776665555555555666555544444443 789999999
Q ss_pred EEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChH
Q 001215 703 VVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKRE 782 (1122)
Q Consensus 703 ~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~e 782 (1122)
.++..|++|.+|++.+++++.+|||++|++|+++++. +.++++.++ +|+++|.+|+++++|+++++++||+++
T Consensus 77 ~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~~----~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~ 149 (227)
T 3ewk_A 77 DSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARL----KQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAEG 149 (227)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHHH----HHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCTH
T ss_pred eeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHHH----HHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCHH
Confidence 9999999999999999999999999999999998654 456777777 799999999999999999999999999
Q ss_pred HHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEEEEccCCC------EEEEEEEEeeeeCCCCCE
Q 001215 783 EAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGK------YVEALLSANKRTNAEGKI 856 (1122)
Q Consensus 783 eliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~------~~~v~~~~~pv~d~~G~i 856 (1122)
|++|+... .+.++.........+.+.+..+..+..++..++++|. .+|+.++.+|+.|.+|.+
T Consensus 150 e~~g~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~ 218 (227)
T 3ewk_A 150 ELLGQSPS-----------ILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGL 218 (227)
T ss_dssp HHHSSCGG-----------GGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCE
T ss_pred HHcCCChh-----------hccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCE
Confidence 99999742 2233444455666677777777788888999999997 899999999999999999
Q ss_pred EEEEEeeec
Q 001215 857 SGILCFLHV 865 (1122)
Q Consensus 857 ~gvv~~l~D 865 (1122)
+|++++.+|
T Consensus 219 ~~~v~i~~D 227 (227)
T 3ewk_A 219 VGYVQIQHD 227 (227)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999987
No 20
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.94 E-value=2.3e-26 Score=244.72 Aligned_cols=182 Identities=31% Similarity=0.505 Sum_probs=155.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCC-CCCCccCCCCCCCCccHH
Q 001215 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP-DLEPYLGFHYPATDIPQA 274 (1122)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~-~~~~~lg~~~pa~dip~~ 274 (1122)
+..+++.++..+|.+ +.|++++++++++++++++|+|||+||.|++|++|++++|+..+ ++++++|.+||.+|||.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 345566778888888 66999999999999999999999999999999999999999986 589999999999999999
Q ss_pred HHHHHHhCCeEEeecCCCCcceeec--CCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCccccccccc
Q 001215 275 SRFLIMKNKVRMICDCLAPPVKVIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQE 352 (1122)
Q Consensus 275 ~r~l~~~~~~r~i~d~~~~~~~~~~--~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~ 352 (1122)
++.+|.++++|+|.|+...++..+| ...+++|++++.+..++.+|||.+|++++|++|.|+|||+.+
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~----------- 159 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH----------- 159 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEET-----------
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEEC-----------
Confidence 9999999999999999999888765 356789999999999999999999999999999999999998
Q ss_pred ccCceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 353 QGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 353 ~~~~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|++||+|.|||++||.|+.+....++.++..+++.|..
T Consensus 160 --~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~ 197 (208)
T 2lb5_A 160 --QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ 197 (208)
T ss_dssp --TEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988854
No 21
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.94 E-value=5.5e-26 Score=268.15 Aligned_cols=210 Identities=12% Similarity=0.109 Sum_probs=163.2
Q ss_pred HHHHHHhhhhHHH-----HHHHHHHHhcCCCC----CHHHHHHHHHHHHH--HHHHHHHHhhh-c-ccccccccce----
Q 001215 891 LEYIRREIRKPLN-----GIAFMQNLMGTSDL----SEEQKQLLKTSVLC--QEQLTNIVDDT-D-IESIEECYMV---- 953 (1122)
Q Consensus 891 La~isHELrnPLt-----~I~g~~~lL~~~~l----~~~~~~~L~~i~~~--~~rl~~iI~dL-d-~srie~g~~~---- 953 (1122)
++.++|||||||+ .|.|++++++.... .++..++++.+... +.++ +++++ . +.+.+.+...
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~~~ 198 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKHIG 198 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTSBT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCccc
Confidence 4567799999999 77999998765322 34557778776554 6677 88885 4 4443333322
Q ss_pred eeeEEeehHHHHHHHHHHhcccccc-----CCcEEEeec---CCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCC---
Q 001215 954 LKSGEFNLGEALDAVMTQVMIPSRE-----HQVQFIRDL---PAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFE--- 1022 (1122)
Q Consensus 954 l~~~~~dL~~vi~~v~~~~~~~~~~-----~~i~l~~~~---~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~--- 1022 (1122)
...+++++.+++++++..+...+.. +++.+.+.. ++. ...+.+|+.+|.|||.|||.||+||++...
T Consensus 199 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~ 276 (419)
T 1y8o_A 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK--PIQVVYVPSHLFHMLFELFKNSMRATVELYEDR 276 (419)
T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2448999999999999999887765 788887632 232 237999999999999999999999997311
Q ss_pred ---CCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--C------------CCCccchHHHHHHH
Q 001215 1023 ---GSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--G------------ASREGLGLYISQKL 1085 (1122)
Q Consensus 1023 ---g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~------------~~GtGLGL~I~r~i 1085 (1122)
.+.|.|++...++ .+.|+|+|+|+|||++.+++||+||. + ..|+||||+|||.+
T Consensus 277 ~~~~~~I~I~~~~~~~---------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~i 347 (419)
T 1y8o_A 277 KEGYPAVKTLVTLGKE---------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLY 347 (419)
T ss_dssp SSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHH
T ss_pred CCCCCCEEEEEEeCCC---------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHH
Confidence 1279999888776 89999999999999999999999983 1 24999999999999
Q ss_pred HHHcCcEEEEEecCCceEEEEEEEecCCC
Q 001215 1086 VKLMNGTVQYIREAERSSFLILIEFPLAH 1114 (1122)
Q Consensus 1086 ve~~gG~I~v~s~~gg~tF~~~l~LP~~~ 1114 (1122)
++.|||+|++.|.+|+|| +|+|.||...
T Consensus 348 v~~~gG~I~v~s~~g~Gt-~f~i~LP~~~ 375 (419)
T 1y8o_A 348 ARYFQGDLKLYSMEGVGT-DAVIYLKALS 375 (419)
T ss_dssp HHHTTCEEEEEEETTTEE-EEEEEEESCG
T ss_pred HHHhCCEEEEEecCCCCE-EEEEEecCCC
Confidence 999999999999988766 6777778754
No 22
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.88 E-value=1.2e-22 Score=236.17 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=153.1
Q ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEEeehHH
Q 001215 885 ANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGEFNLGE 963 (1122)
Q Consensus 885 ~~k~~fLa~isHELrnPLt~I~g~~~lL~~~~l~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~~dL~~ 963 (1122)
..|..++.+++|||++|++.|.++.+.+.. +.+.+..+++.+++++| ++.. ....+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHH
Confidence 457889999999999999999887776553 45677788899999997 6652 124577889
Q ss_pred HHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHH---HHHHHHHHHHHHHhhcCCC----------CCCCeEEEEE
Q 001215 964 ALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKL---RLQQVLSDFLTNALIFTPA----------FEGSSIAFRV 1030 (1122)
Q Consensus 964 vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~---~L~QVL~NLL~NAik~t~~----------~~g~~I~I~v 1030 (1122)
+++.+...++..+...+.++.+.+..+. +..|+. ++.|+|.||+.||+||+-. .+++.|+|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~----~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED----TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT----CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC----eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 9999999888888777766666665542 345775 5555599999999999811 1466999999
Q ss_pred EecccccCccceeEEEEEEEEcCCCCCChhhh------------------------hhhcCCCC-------CCCCccchH
Q 001215 1031 IPQKERIGKNIHIVHLEFRITHPAPGIPEKLI------------------------HDMFYHSQ-------GASREGLGL 1079 (1122)
Q Consensus 1031 ~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~------------------------~~iF~~f~-------~~~GtGLGL 1079 (1122)
...++ ++.|+|+|+|+||+++.+ +++|+||. ..+|+|+||
T Consensus 145 ~~~~~---------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~~~~G~GlGL 215 (379)
T 1b3q_A 145 RHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGM 215 (379)
T ss_dssp EEETT---------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCS
T ss_pred EEeCC---------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccCCCCCccccH
Confidence 88777 899999999999999987 88999962 235999999
Q ss_pred HHHHHHHHHcCcEEEEEecCCceEEEEEEEecCC
Q 001215 1080 YISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 1113 (1122)
Q Consensus 1080 ~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~ 1113 (1122)
+|||++++.|||+|+++|.+|+|| +|++.||+.
T Consensus 216 ~iv~~~v~~~gG~i~v~s~~g~Gt-~f~i~lPl~ 248 (379)
T 1b3q_A 216 DVVKNVVESLNGSMGIESEKDKGT-KVTIRLPLT 248 (379)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTEE-EEEEEEESS
T ss_pred HHHHHHHHHCCCEEEEEEcCCCCe-EEEeccCCc
Confidence 999999999999999999998765 566666664
No 23
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.88 E-value=7.6e-22 Score=211.14 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=139.9
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeeeEEeehH
Q 001215 886 NSLNKLEYIRREIRKPLNGIAFMQNLMGTS--DLSEEQKQLLKTSVLCQEQLTNIVDDT-DIESIEECYMVLKSGEFNLG 962 (1122)
Q Consensus 886 ~k~~fLa~isHELrnPLt~I~g~~~lL~~~--~l~~~~~~~L~~i~~~~~rl~~iI~dL-d~srie~g~~~l~~~~~dL~ 962 (1122)
.+.++.+.++|++++||++|.+.++++... ..++...+.+..+.+...++...++++ ... .+.++.
T Consensus 27 er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l~ 95 (218)
T 3ehh_A 27 ERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRLK 95 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCHH
Confidence 345567789999999999999988887542 334556777888877777777777774 222 235677
Q ss_pred HHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccce
Q 001215 963 EALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIH 1042 (1122)
Q Consensus 963 ~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~ 1042 (1122)
++++.+...+ ...++.+.++++.+.+. ....+...|.+|+.||+.||+||++ ++.|.|++...++
T Consensus 96 ~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~------- 160 (218)
T 3ehh_A 96 DELINIKQIL----EAADIMFIYEEEKWPEN-ISLLNENILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWK------- 160 (218)
T ss_dssp HHHHHHHHHH----HHTTCEEECCCCCCCSC-CCHHHHHHHHHHHHHHHHHHHHHTC---CSEEEEEEEEETT-------
T ss_pred HHHHHHHHHH----HhcCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhCC---CCEEEEEEEEeCC-------
Confidence 8877777665 46788888888765432 3356788899999999999999997 3489999988777
Q ss_pred eEEEEEEEEcCCCCCChhhhhhhcCCCCCCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEe
Q 001215 1043 IVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEF 1110 (1122)
Q Consensus 1043 ~~~v~~~V~D~G~GI~~e~~~~iF~~f~~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~L 1110 (1122)
.+.|+|+|||+|||++.. .|+||||++|+++++.|||+|++.|.+ |++|+|+||+
T Consensus 161 --~~~i~V~D~G~Gi~~~~~----------~g~GlGL~~~~~~v~~~gG~i~~~s~~-Gt~~~i~lP~ 215 (218)
T 3ehh_A 161 --EVVITVSDDGTFKGEENS----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPN 215 (218)
T ss_dssp --EEEEEEEESSCCCC------------------CHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC
T ss_pred --EEEEEEEECCcCCCCCCC----------CCCCCCHHHHHHHHHHcCCEEEEeCCC-CeEEEEEEec
Confidence 899999999999999754 689999999999999999999999999 6666655544
No 24
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.87 E-value=1.9e-21 Score=195.52 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=126.3
Q ss_pred EEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccc
Q 001215 957 GEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKER 1036 (1122)
Q Consensus 957 ~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~ 1036 (1122)
+++++.+++++++..+...+..+++++.++++++. .+.+|+..|.|||.|||.||+||++ + .|.|++...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~d~~~l~~il~nLl~NAi~~~~---~-~i~i~~~~~~~- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI---SFVGEQNDFVEVMGNVLDNACKYCL---E-FVEISARQTDE- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC---EEESCHHHHHHHHHHHHHHHHHHCS---S-EEEEEEEECSS-
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc---eEeeCHHHHHHHHHHHHHHHHHhCc---C-eEEEEEEecCC-
Confidence 57999999999999999999999999999998764 5899999999999999999999997 3 88888877776
Q ss_pred cCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC----CCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecC
Q 001215 1037 IGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ----GASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPL 1112 (1122)
Q Consensus 1037 ~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~----~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~ 1112 (1122)
.+.|+|.|+|+||+++.++++|+||. ..+|+||||++|+++++.|||+|++.+.+++|+ +|++.||.
T Consensus 74 --------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~-~~~i~lP~ 144 (152)
T 1id0_A 74 --------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGA-RMEVIFGR 144 (152)
T ss_dssp --------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSE-EEEEEECC
T ss_pred --------EEEEEEEeCCCCcCHHHHHHHhccceeccCCCCCcccCHHHHHHHHHHcCCEEEEEeCCCCcE-EEEEEEec
Confidence 78999999999999999999999983 346899999999999999999999999887665 67777787
Q ss_pred CCCCC
Q 001215 1113 AHQKD 1117 (1122)
Q Consensus 1113 ~~~~~ 1117 (1122)
.....
T Consensus 145 ~~~~~ 149 (152)
T 1id0_A 145 QHSAP 149 (152)
T ss_dssp CC---
T ss_pred cccCC
Confidence 65443
No 25
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.87 E-value=2.6e-21 Score=194.33 Aligned_cols=146 Identities=23% Similarity=0.335 Sum_probs=126.6
Q ss_pred eeEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecc
Q 001215 955 KSGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQK 1034 (1122)
Q Consensus 955 ~~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~ 1034 (1122)
+.+++++.+++++++..+...+..+++++.++++++.. .+.+|+..|.+||.|||.||+||++ .++.|.|++...+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~i~~d~~~l~~il~nll~NAi~~~~--~~~~I~i~~~~~~ 77 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL--RVEADRTRIKQVLINLVQNAIEATG--ENGKIKITSEDMY 77 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSC--EEEECHHHHHHHHHHHHHHHHHHHC--TTCEEEEEEEECS
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCCc--EEEECHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEEecC
Confidence 46889999999999999999999999999998876533 7899999999999999999999997 4669999988877
Q ss_pred cccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--CCCCccchHHHHHHHHH-HcCcEEEEEecCCceEEEEEEEec
Q 001215 1035 ERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--GASREGLGLYISQKLVK-LMNGTVQYIREAERSSFLILIEFP 1111 (1122)
Q Consensus 1035 ~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~~~GtGLGL~I~r~ive-~~gG~I~v~s~~gg~tF~~~l~LP 1111 (1122)
+ .+.|+|+|+|+||+++.++++|+||. +..|+||||++|+++++ .|||++.+.+.++|+ +|++.||
T Consensus 78 ~---------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~g~--~~~i~lP 146 (152)
T 3a0y_A 78 T---------KVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGV--VFIFEIP 146 (152)
T ss_dssp S---------EEEEEEEEESCCCCGGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTTSCEEEEEEETTEE--EEEEEEE
T ss_pred C---------EEEEEEEeCCCCcCHHHHHhHhhhhccCCCCCCCcCHHHHHHHHHHhCCcEEEEecCCCCE--EEEEEeC
Confidence 6 89999999999999999999999983 45689999999999999 999999999987654 5566667
Q ss_pred CCCC
Q 001215 1112 LAHQ 1115 (1122)
Q Consensus 1112 ~~~~ 1115 (1122)
..+.
T Consensus 147 ~~~~ 150 (152)
T 3a0y_A 147 KTPE 150 (152)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 6543
No 26
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.86 E-value=4.9e-21 Score=192.35 Aligned_cols=141 Identities=15% Similarity=0.197 Sum_probs=116.7
Q ss_pred eeEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecc
Q 001215 955 KSGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQK 1034 (1122)
Q Consensus 955 ~~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~ 1034 (1122)
+.+++++.+++++++..+..... ++.+.++.+.. ..+.+|+..|.|||.|||.||+||++ .+ .|.|++...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~--~~-~I~i~~~~~~ 75 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPSPT---CIIVGLPAGLRLAVDNAIANAVKHGG--AT-LVQLSAVSSR 75 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSCCC---CEEEECHHHHHHHHHHHHHHHHHTTC--CS-EEEEEEEEET
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccCCC---ceEecCHHHHHHHHHHHHHHHHhcCC--Cc-EEEEEEEecC
Confidence 46889999999999999887664 56666666543 27899999999999999999999997 45 9999988877
Q ss_pred cccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC-----CCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEE
Q 001215 1035 ERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ-----GASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIE 1109 (1122)
Q Consensus 1035 ~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~-----~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~ 1109 (1122)
+ .+.|+|.|+|+||+++.++++|+||. +..|+||||+||+++++.|||+|++.+.+++|+ +|++.
T Consensus 76 ~---------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~-~~~i~ 145 (150)
T 1ysr_A 76 A---------GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGA-RLVLR 145 (150)
T ss_dssp T---------EEEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECTTSSE-EEEEE
T ss_pred C---------EEEEEEEECCCCCCHHHHHHHhcccccCCCCCCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCE-EEEEE
Confidence 7 89999999999999999999999984 346899999999999999999999999887654 66667
Q ss_pred ecCC
Q 001215 1110 FPLA 1113 (1122)
Q Consensus 1110 LP~~ 1113 (1122)
||+.
T Consensus 146 lP~~ 149 (150)
T 1ysr_A 146 LPGP 149 (150)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7764
No 27
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.85 E-value=7.3e-21 Score=192.69 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=111.2
Q ss_pred eeeeEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 001215 953 VLKSGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIP 1032 (1122)
Q Consensus 953 ~l~~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~ 1032 (1122)
+++.+++++.+++++++..+... ..+++++.+++++..+ .+.+|+..|.|||.|||.||+||++.. ++.|.|++..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--~i~~d~~~l~~il~nLl~NAik~~~~~-~~~I~i~~~~ 77 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP--ELAHDPDQIEQVLLNIVRNALQALGPE-GGEIILRTRT 77 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC--CEEECHHHHHHHHHHHHHHHHHHHGGG-CEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC--eeeeCHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEec
Confidence 45678999999999999999988 7889999999988765 588999999999999999999999731 6689888876
Q ss_pred ccccc-CccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--CCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEE
Q 001215 1033 QKERI-GKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--GASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIE 1109 (1122)
Q Consensus 1033 ~~~~~-~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~ 1109 (1122)
..+.. ........+.|+|.|+|+||+++.++++|+||. +..|+||||++|+++++.|||+|++++.++++ +|++.
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~~--~~~i~ 155 (160)
T 1r62_A 78 AFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHT--EFSVY 155 (160)
T ss_dssp EEEEEETTEEEEEEEEEEEEEECTTC--------------------CHHHHHHHHHHHHTTCEEEEEEETTEE--EEEEE
T ss_pred cccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCE--EEEEE
Confidence 54310 001122378999999999999999999999983 55789999999999999999999999998873 56666
Q ss_pred ecCC
Q 001215 1110 FPLA 1113 (1122)
Q Consensus 1110 LP~~ 1113 (1122)
||+.
T Consensus 156 lP~~ 159 (160)
T 1r62_A 156 LPIR 159 (160)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 6753
No 28
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.85 E-value=1.5e-20 Score=194.51 Aligned_cols=142 Identities=24% Similarity=0.430 Sum_probs=119.1
Q ss_pred EeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEE--eccc
Q 001215 958 EFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVI--PQKE 1035 (1122)
Q Consensus 958 ~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~--~~~~ 1035 (1122)
+++|.++++.++..+... ..+++++.+++++... .+.+|+..|.+||.|||.||++|++ .++.|.|++. ...+
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~--~~~~i~I~i~~~~~~~ 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDL--YVEIDQDKITQVLDNIISNALKYSP--EGGHVTFSIDVNEEEE 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSCC--EEESCHHHHHHHHHHHHHHHHHTCC--TTCCEEEEEEEETTTT
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCCc--EEEeCHHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEEccCCC
Confidence 589999999999999998 8899999999887543 7899999999999999999999997 4557777774 3444
Q ss_pred ccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--------CCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEE
Q 001215 1036 RIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--------GASREGLGLYISQKLVKLMNGTVQYIREAERSSFLIL 1107 (1122)
Q Consensus 1036 ~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--------~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~ 1107 (1122)
.+.|+|.|+|+||+++.+.++|++|. +..|.||||++|+++++.|||+|.+.+.+++|+ +|+
T Consensus 77 ---------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt-~~~ 146 (177)
T 3sl2_A 77 ---------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGT-TIT 146 (177)
T ss_dssp ---------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEE-EEE
T ss_pred ---------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCe-EEE
Confidence 79999999999999999999999984 234899999999999999999999999888654 555
Q ss_pred EEecCCC
Q 001215 1108 IEFPLAH 1114 (1122)
Q Consensus 1108 l~LP~~~ 1114 (1122)
+.||+..
T Consensus 147 i~lP~~~ 153 (177)
T 3sl2_A 147 FTLPYKE 153 (177)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 5556544
No 29
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.84 E-value=1.7e-20 Score=190.81 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=119.6
Q ss_pred eeeeEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 001215 953 VLKSGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIP 1032 (1122)
Q Consensus 953 ~l~~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~ 1032 (1122)
++..+++++.+++++++..+.. .+..+.++++.+.. .+.+|+..|.|||.|||.||+||+ ++.|.|++..
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~~--~v~~d~~~l~~il~nll~NAik~~----~~~I~i~~~~ 73 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGSI--EVKMHPLSIKRAVANMVVNAARYG----NGWIKVSSGT 73 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSCC--CEEECHHHHHHHHHHHHHHHHTTC----CSCEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhhc----CCeEEEEEEE
Confidence 4567899999999999998654 34445555444432 689999999999999999999998 3389999888
Q ss_pred cccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCCC------CCCccchHHHHHHHHHHcCcEEEEEecCCceEEEE
Q 001215 1033 QKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQG------ASREGLGLYISQKLVKLMNGTVQYIREAERSSFLI 1106 (1122)
Q Consensus 1033 ~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~------~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~ 1106 (1122)
.++ .+.|.|.|+|+||+++.++++|+||.. ..|+||||+||+++++.|||+|++.+.+++|+ +|
T Consensus 74 ~~~---------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~-~~ 143 (161)
T 1bxd_A 74 EPN---------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGL-SI 143 (161)
T ss_dssp ETT---------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEE-EE
T ss_pred cCC---------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeE-EE
Confidence 777 899999999999999999999999832 25899999999999999999999999877654 66
Q ss_pred EEEecCCCCCCC
Q 001215 1107 LIEFPLAHQKDA 1118 (1122)
Q Consensus 1107 ~l~LP~~~~~~~ 1118 (1122)
++.||+......
T Consensus 144 ~i~lP~~~~~~~ 155 (161)
T 1bxd_A 144 RAWLPVPVTRAQ 155 (161)
T ss_dssp EEEECCCSCCCC
T ss_pred EEEEeCCcccCC
Confidence 667777654433
No 30
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.80 E-value=6.2e-19 Score=203.63 Aligned_cols=239 Identities=11% Similarity=0.038 Sum_probs=179.4
Q ss_pred HHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCc---------ce
Q 001215 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIE---------ER 682 (1122)
Q Consensus 612 ~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~---------~~ 682 (1122)
....++++++..++++|.+|+|+|+|+++.+++||+++|++|+++.+++||++.+.+...+........ ..
T Consensus 87 ~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (361)
T 4f3l_A 87 FTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKN 166 (361)
T ss_dssp HHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGG
T ss_pred HHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccC
Confidence 445678999999999999999999999999999999999999999999999999998888876442111 01
Q ss_pred eEEEEEEEeCCC----CCCCeEEEEEEEEEec---------------------CCCCCEEEEEEEEEcchhhHHHHHHHH
Q 001215 683 NVEIKLRAFGPR----ETSGPVILVVNACCTQ---------------------DTKENVIGVCFVGQDITGQKLVMDKYT 737 (1122)
Q Consensus 683 ~~e~~l~~~~~~----~dG~~~~v~v~~~pi~---------------------d~~G~v~gvv~v~~DITerK~aE~~L~ 737 (1122)
...+.++..... ....+.++.+.+.... ...+....+++++++++.+...|..
T Consensus 167 ~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~-- 244 (361)
T 4f3l_A 167 QLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMC-- 244 (361)
T ss_dssp EEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEEC--
T ss_pred ceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccccc--
Confidence 122333322111 2244455544443321 1123345677777887765432110
Q ss_pred hHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHH
Q 001215 738 RIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMN 817 (1122)
Q Consensus 738 ~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~ 817 (1122)
.+-..... .++..|.+|.++++|+++..++||+++|++|+.+ ..+.||++...+...+.
T Consensus 245 -------~i~~~~~~---f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~-----------~~~iHpdD~~~~~~~~~ 303 (361)
T 4f3l_A 245 -------TVEEPNEE---FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSG-----------YDYYHVDDLENLAKCHE 303 (361)
T ss_dssp -------SCSSSCCE---EEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBG-----------GGGBCHHHHHHHHHHHH
T ss_pred -------cccCCcce---eEEEEcCCceEEEECChhhhhhCcCHHHHcCCCH-----------HHeECHHHHHHHHHHHH
Confidence 11111122 4778899999999999999999999999999873 46788999999988899
Q ss_pred HHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCC-CCCEEEEEEeeecccHHHHHH
Q 001215 818 KVISGQDADKILFGFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASPELQYA 873 (1122)
Q Consensus 818 ~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DITerkq~e 873 (1122)
..+.++.....++++++++|.++|+..++.+++|. +|++.+++|+.+|||++...+
T Consensus 304 ~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 304 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred HHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 88887777788999999999999999999999998 899999999999999987654
No 31
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.79 E-value=3.6e-19 Score=186.19 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=118.2
Q ss_pred eEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCC----------CCCCe
Q 001215 956 SGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPA----------FEGSS 1025 (1122)
Q Consensus 956 ~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~----------~~g~~ 1025 (1122)
.+++++.++++.+...+...+..+++.+.++++.+.. .....+..++.|+|.|||.||+||+.. ..++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~ 80 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDT-ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGT 80 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTC-EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcc-cccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCe
Confidence 3579999999999999999998888888777765432 122233456677799999999999711 14669
Q ss_pred EEEEEEecccccCccceeEEEEEEEEcCCCCCChhhh------------------------hhhcCCCC-------CCCC
Q 001215 1026 IAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLI------------------------HDMFYHSQ-------GASR 1074 (1122)
Q Consensus 1026 I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~------------------------~~iF~~f~-------~~~G 1074 (1122)
|.|++...++ .+.|+|+|+|+||+++.+ +++|+||. ...|
T Consensus 81 I~I~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~g 151 (189)
T 1i58_A 81 LILSARHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSG 151 (189)
T ss_dssp EEEEEEEETT---------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGGT
T ss_pred EEEEEEecCC---------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccccCCCCCC
Confidence 9999988777 899999999999999976 99999973 2358
Q ss_pred ccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecC
Q 001215 1075 EGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPL 1112 (1122)
Q Consensus 1075 tGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~ 1112 (1122)
+||||+||+++++.|||+|++.+.+++|| +|++.||+
T Consensus 152 ~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt-~~~i~lPl 188 (189)
T 1i58_A 152 RGVGMDVVKNVVESLNGSISIESEKDKGT-KVTIRLPL 188 (189)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEEETTTEE-EEEEEEEC
T ss_pred CccCHHHHHHHHHHcCCEEEEEeCCCCce-EEEEEEeC
Confidence 99999999999999999999999988665 66667775
No 32
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.77 E-value=4.1e-18 Score=198.38 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=171.2
Q ss_pred HHHHHHhcCccEEEecCC-CcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHc-----------C--
Q 001215 613 MVRLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL-----------G-- 678 (1122)
Q Consensus 613 l~~lie~a~~gI~~~D~d-G~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~-----------g-- 678 (1122)
...++++++..+++++.+ |+|+|+|++++.++||+++|++|+++.+++||+|.+.+.+.+..... |
T Consensus 88 ~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~ 167 (387)
T 4f3l_B 88 KHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLP 167 (387)
T ss_dssp HHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSCC----------------
T ss_pred HHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCc
Confidence 345788899999999987 99999999999999999999999999999999999988876643220 0
Q ss_pred --------------CcceeEEEEEEEeCCC-----------------CCCCeEEEEEEEEEecC---------------C
Q 001215 679 --------------IEERNVEIKLRAFGPR-----------------ETSGPVILVVNACCTQD---------------T 712 (1122)
Q Consensus 679 --------------~~~~~~e~~l~~~~~~-----------------~dG~~~~v~v~~~pi~d---------------~ 712 (1122)
+..+.+.++++..... +...+.++.+++..... .
T Consensus 168 ~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~ 247 (387)
T 4f3l_B 168 VKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNE 247 (387)
T ss_dssp ----------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------------
T ss_pred cCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccC
Confidence 1122333333322100 34555566665543321 1
Q ss_pred CCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhcccc
Q 001215 713 KENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGE 792 (1122)
Q Consensus 713 ~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~ 792 (1122)
.++..++++++++++....... ...+..+... .++..|.+|+++++|+++..++||+++|++|+.+
T Consensus 248 ~~~~~~lvai~r~~~~~~~~~~--------~~ei~~~~~~---fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~--- 313 (387)
T 4f3l_B 248 GCNLSCLVAIGRLHSHMVPQPA--------NGEIRVKSME---YVSRHAIDGKFVFVDQRATAILAYLPQELLGTSC--- 313 (387)
T ss_dssp --CCCEEEEEEEECCCSCCSCC--------CSSSCBCCCE---EEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBG---
T ss_pred CCcceEEEEEEecccCCCCCCc--------ccccccCCce---EEEEECCCCEEEEECCCcccccCCCHHHHcCCcH---
Confidence 1223467777777653211000 0012222333 4788899999999999999999999999999873
Q ss_pred ccccccccccccCcchHHHHHHHHHHHhcCCCc-ceeEEEEEccCCCEEEEEEEEeeeeCC-CCCEEEEEEeeecccHHH
Q 001215 793 VFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA-DKILFGFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASPEL 870 (1122)
Q Consensus 793 i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~-~~~e~~~~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DITerk 870 (1122)
..+.||++...+...+...+.++.. ...+++++++||.++|+..++.++.|. +|++.+++|+.+|||++|
T Consensus 314 --------~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk 385 (387)
T 4f3l_B 314 --------YEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANV 385 (387)
T ss_dssp --------GGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC---
T ss_pred --------HHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhh
Confidence 4677899999999999998876544 678999999999999999999999987 899999999999999987
Q ss_pred H
Q 001215 871 Q 871 (1122)
Q Consensus 871 q 871 (1122)
.
T Consensus 386 ~ 386 (387)
T 4f3l_B 386 L 386 (387)
T ss_dssp -
T ss_pred c
Confidence 4
No 33
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.75 E-value=6.4e-18 Score=165.01 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=99.1
Q ss_pred eehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccC
Q 001215 959 FNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIG 1038 (1122)
Q Consensus 959 ~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~ 1038 (1122)
+++.+.++.+...+ +.+++++.++++.+.+. ....++..|.+++.||+.||+||++ ++.|.|++...++
T Consensus 2 v~l~~~l~~~~~~~----~~~~i~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~--- 70 (128)
T 3ehg_A 2 IRLKDELINIKQIL----EAADIMFIYEEEKWPEN-ISLLNENILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWK--- 70 (128)
T ss_dssp CCHHHHHHHHHHHH----HHTTCEEECCCCSCCSC-CCHHHHHHHHHHHHHHHHHHHHHTC---CSEEEEEEEEETT---
T ss_pred ccHHHHHHHHHHHH----HHcCCEEEEEcCccccc-cCHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEEEeCC---
Confidence 35566666665554 46788888887764432 3345789999999999999999997 3489999988777
Q ss_pred ccceeEEEEEEEEcCCCCCChhhhhhhcCCCCCCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEe
Q 001215 1039 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEF 1110 (1122)
Q Consensus 1039 ~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~L 1110 (1122)
.+.|+|+|||+|||++.+ .|+|+||++|+++++.|||+|.+.|.+ |++|++++|+
T Consensus 71 ------~~~i~V~D~G~Gi~~~~~----------~g~GlGL~~~~~~~~~~gG~i~~~s~~-Gt~~~i~lP~ 125 (128)
T 3ehg_A 71 ------EVVITVSDDGTFKGEENS----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPN 125 (128)
T ss_dssp ------EEEEEEEESSCCCSCSSC----------CCTTSHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC
T ss_pred ------EEEEEEEECCcCcCcccC----------CCCCccHHHHHHHHHHcCCEEEEEeCC-CEEEEEEEec
Confidence 899999999999998644 689999999999999999999999999 6665555543
No 34
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.72 E-value=4.9e-17 Score=160.99 Aligned_cols=139 Identities=10% Similarity=0.036 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcC--CcccccccCCchHHHHHHHHHHHcCCcc
Q 001215 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG--TALVDLVAGDSVDVVKNMLSSAFLGIEE 681 (1122)
Q Consensus 604 ~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG--~~~~dl~~~~~~~~~~~~l~~~l~g~~~ 681 (1122)
++|++++++|+.+++++++++|.+|.++.+++||+++.+++||+++++.+ ..+.+++||++.+.+...+..++.++..
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~ 81 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCc
Confidence 46788899999999999999999999999999999999999999999876 3466899999999999999998887776
Q ss_pred eeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhh
Q 001215 682 RNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGI 746 (1122)
Q Consensus 682 ~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l 746 (1122)
...++++. +++|..+|+...+.+++|.+|++.+++++++|||++|++|++|++++++|+.+
T Consensus 82 ~~~e~r~~----~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~l 142 (142)
T 3mr0_A 82 YDVEYRVR----TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRRL 142 (142)
T ss_dssp EEEEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhcC
Confidence 66666554 67999999999999999999999999999999999999999999999998764
No 35
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1e-16 Score=156.36 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=99.0
Q ss_pred eEEeehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEeccc
Q 001215 956 SGEFNLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKE 1035 (1122)
Q Consensus 956 ~~~~dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~ 1035 (1122)
.+.++|.++++.++..+ ..+++.+.++++...+. ....|+..|.||+.||+.||+||++ ++.|.|++...+
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~NA~k~~~---~~~i~i~~~~~~- 72 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSV-VDSALADQAEAVVREAVSNAVRHAA---ASTLTVRVKVDD- 72 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGG-SCHHHHHHHHHHHHHHHHHCCCCSS---CCEEEEEEEESS-
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCccc-CCHHHHHHHHHHHHHHHHHHHHhCC---CceEEEEEEEcC-
Confidence 46789999999999988 45667776666665442 2344588999999999999999996 348888877632
Q ss_pred ccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCCCCCCccchHHHHHHHHHHcCcEEEEEecCC-ceEEEEEEEecCC
Q 001215 1036 RIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAE-RSSFLILIEFPLA 1113 (1122)
Q Consensus 1036 ~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~~~GtGLGL~I~r~ive~~gG~I~v~s~~g-g~tF~~~l~LP~~ 1113 (1122)
. +.|+|.|+|+||+++. +|+||++|+++++.|||++.+.+.++ +++ +|++.||+.
T Consensus 73 --------~-~~i~v~D~G~gi~~~~-------------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~-~~~i~lP~~ 128 (129)
T 3zxo_A 73 --------D-LCIEVTDNGRGMPDEF-------------TGSGLTNLRQRAEQAGGEFTLASMPGASGT-VLRWSAPLS 128 (129)
T ss_dssp --------E-EEEEEEECCCCCTTTT-------------CSHHHHHHHHHHHHTTCEEEEEECTTTCCE-EEEEEEESC
T ss_pred --------C-EEEEEecCCCCCCccc-------------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcE-EEEEEecCC
Confidence 2 7899999999999864 69999999999999999999999988 444 666666764
No 36
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.5e-15 Score=146.89 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=93.1
Q ss_pred ehHHHHHHHHHHhccccccCCcEEEeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCc
Q 001215 960 NLGEALDAVMTQVMIPSREHQVQFIRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGK 1039 (1122)
Q Consensus 960 dL~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~ 1039 (1122)
+|.+.+.+++..+ ...++.+.++++.+.+. ....++..|.+|+.||++||+||++ . +.|.|++...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~--~-~~i~i~~~~~~----- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSV-VDTVLANHAEAVLREAVSNAVRHAN--A-TSLAINVSVED----- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGG-CCHHHHHHHHHHHHHHHHHHHTCTT--C-CEEEEEEEEEE-----
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCcccc-ccHHHHHHHHHHHHHHHHHHHHhCC--C-CEEEEEEEeCC-----
Confidence 5677788888877 35566666665554432 2334588999999999999999997 3 48888876532
Q ss_pred cceeEEEEEEEEcCCCCCChhhhhhhcCCCCCCCCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecC
Q 001215 1040 NIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPL 1112 (1122)
Q Consensus 1040 ~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~~~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~ 1112 (1122)
. +.++|+|||+||+++. .|+||++|+++++.|||++.+.+.+++|+ +|++.||+
T Consensus 69 ----~-~~i~v~D~G~gi~~~~-------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~-~~~i~lP~ 122 (124)
T 3zxq_A 69 ----D-VRVEVVDDGVGISGDI-------------TESGLRNLRQRADDAGGEFTVENMPTGGT-LLRWSAPL 122 (124)
T ss_dssp ----E-EEEEEEECCCSSCGGG-------------SHHHHHHHHHHHHHHTCEEEEEECTTSSE-EEEEEEEC
T ss_pred ----C-EEEEEEECCCCCCccc-------------cccCHHHHHHHHHHhCCEEEEEEcCCCcE-EEEEEEec
Confidence 2 7899999999999875 49999999999999999999999988544 55555665
No 37
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.62 E-value=8.6e-15 Score=166.03 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=161.0
Q ss_pred EEEec-CCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCc--------ceeEEEEEEEeCC-
Q 001215 624 ILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIE--------ERNVEIKLRAFGP- 693 (1122)
Q Consensus 624 I~~~D-~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~--------~~~~e~~l~~~~~- 693 (1122)
+++++ .+|+|+|+|+.+..++||+.++++|+++.+++||++.+.+...+...+.... .+.+-.+......
T Consensus 6 ~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~~~ 85 (339)
T 3rty_A 6 CCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRG 85 (339)
T ss_dssp EEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECCC-
T ss_pred EEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEeccCC
Confidence 46677 6999999999999999999999999999999999999987777664332111 1223333221110
Q ss_pred -----------CCCCCeEEEEEEEEEecCC---------CCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhh-cCCCC
Q 001215 694 -----------RETSGPVILVVNACCTQDT---------KENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIV-SSPSA 752 (1122)
Q Consensus 694 -----------~~dG~~~~v~v~~~pi~d~---------~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~-e~~~~ 752 (1122)
.+...+.|+.....++.+. +|...+++.++++++.......+ ++ ....+
T Consensus 86 l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e----------~~~~~~~~ 155 (339)
T 3rty_A 86 LKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDE----------ILSQKSPK 155 (339)
T ss_dssp ------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTB----------BCCSSCCE
T ss_pred CCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccch----------hhccCCce
Confidence 1123334444555555554 56778889999999853322111 11 12223
Q ss_pred CCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCc-----ce
Q 001215 753 LIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA-----DK 827 (1122)
Q Consensus 753 li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~-----~~ 827 (1122)
.++..|.+|+++++|+++..++||+++|++|+.. ..+.||++...+...+...+..+.. ..
T Consensus 156 ---fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~-----------~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s 221 (339)
T 3rty_A 156 ---FAIRHTATGIISHVDSAAVSALGYLPQDLIGRSI-----------MDFYHHEDLSVMKETYETVMKKGQTAGASFCS 221 (339)
T ss_dssp ---EEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBC
T ss_pred ---EEEEECCCCeEEEcChhhhcccCCCHHHHcCCcH-----------HHEECHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 5788899999999999999999999999999874 4677899999888888888864443 46
Q ss_pred eEEEEEccCCCEEEEEEEEeeeeCCC-CCEEEEEEeeecccH
Q 001215 828 ILFGFFDQQGKYVEALLSANKRTNAE-GKISGILCFLHVASP 868 (1122)
Q Consensus 828 ~e~~~~~~dG~~~~v~~~~~pv~d~~-G~i~gvv~~l~DITe 868 (1122)
.+++++++||.++|+..+.++++|.. +++..++|.-+.++.
T Consensus 222 ~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~ 263 (339)
T 3rty_A 222 KPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQG 263 (339)
T ss_dssp CCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEC
T ss_pred eEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCC
Confidence 78999999999999999999999865 567678887777764
No 38
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.61 E-value=4.4e-15 Score=146.82 Aligned_cols=138 Identities=9% Similarity=0.089 Sum_probs=117.6
Q ss_pred HHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHH
Q 001215 734 DKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLR 813 (1122)
Q Consensus 734 ~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~ 813 (1122)
++|++++++|+.++++.+. ++|.+|.++.+++||+++.+++||+++++.+... .+..+.||++...+.
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~---------~~~~~ihpdD~~~~~ 69 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEIT---------GHRESIHPDDRARVL 69 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC------------CCBCTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCHH---------HHHhhcCHHHHHHHH
Confidence 5688899999999999998 8999999999999999999999999988765321 134678899999999
Q ss_pred HHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHHHHH
Q 001215 814 IVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQA 883 (1122)
Q Consensus 814 ~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~ae~~ 883 (1122)
..+..++.++.....++++.+++|.++|+...+.++.|.+|.+.+++|+++|||++|++|++|++..++.
T Consensus 70 ~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l 139 (142)
T 3mr0_A 70 AALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREEL 139 (142)
T ss_dssp HHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHH
Confidence 9999999888889999999999999999999999999999999999999999999999999988877654
No 39
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.61 E-value=3.2e-15 Score=163.85 Aligned_cols=192 Identities=9% Similarity=0.042 Sum_probs=119.0
Q ss_pred EEecCCCCCEEEEEEEEEcch------hhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecC---CCCeeeeehhHHHhc
Q 001215 707 CCTQDTKENVIGVCFVGQDIT------GQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLS 777 (1122)
Q Consensus 707 ~pi~d~~G~v~gvv~v~~DIT------erK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~ 777 (1122)
.+++|.+++...+.....+.+ ....++.++++++.+|+.+++++++ +|+++|. +|+|++||+++++++
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~ 99 (258)
T 3p7n_A 23 RDLYDDDDKDHPFTMGQDRPIDGSGAPGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLT 99 (258)
T ss_dssp --------------------------------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHH
T ss_pred CCccccCCCcCceeccCCCCCCcccCCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHc
Confidence 345566665554444433333 3445556689999999999999999 8999999 999999999999999
Q ss_pred CCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEE
Q 001215 778 GLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKIS 857 (1122)
Q Consensus 778 G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~ 857 (1122)
||++++++|+.. ..+.++++...+...+...+..+..+..++.+.++||..+|+.++..|+.|.+|.+.
T Consensus 100 G~~~~el~g~~~-----------~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~ 168 (258)
T 3p7n_A 100 GYSEEECVGRNC-----------RFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELL 168 (258)
T ss_dssp CCCGGGTTTSCG-----------GGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSE
T ss_pred CCCHHHHCCCCh-----------hhccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEE
Confidence 999999999874 233445555666667777777778888999999999999999999999999999999
Q ss_pred EEEEeeecccHHH--HHHHHHHHHHHHHHH---HHHhH---------HHHHHHhhhhHHHHHHHHHHHh
Q 001215 858 GILCFLHVASPEL--QYALQVQRISEQAAA---NSLNK---------LEYIRREIRKPLNGIAFMQNLM 912 (1122)
Q Consensus 858 gvv~~l~DITerk--q~e~~L~~~ae~~~~---~k~~f---------La~isHELrnPLt~I~g~~~lL 912 (1122)
+++++++|||++| +.+.+++...+.... ...+. ...++|++..++..|...+..+
T Consensus 169 ~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i 237 (258)
T 3p7n_A 169 YFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLV 237 (258)
T ss_dssp EEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999994 434333332222110 00011 2456667777776666544433
No 40
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.61 E-value=1.6e-15 Score=166.21 Aligned_cols=178 Identities=13% Similarity=0.108 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHH
Q 001215 599 RIEKIDELRIITNEMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (1122)
Q Consensus 599 ~~~~~~eL~~~e~~l~~lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~ 675 (1122)
...++++|++.+++|+.++++++++|+++|. +|+|++||+++++++||++++++|+++.+++++++.+.....+..+
T Consensus 51 ~~~~~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~ 130 (258)
T 3p7n_A 51 ADDTRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQG 130 (258)
T ss_dssp ----------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHH
T ss_pred chhhHHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHH
Confidence 3456677888889999999999999999999 8999999999999999999999999999999988888777777777
Q ss_pred HcCCcceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhh--HHHHHHHHhHhhhhhhhhcCCCCC
Q 001215 676 FLGIEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ--KLVMDKYTRIQGDYVGIVSSPSAL 753 (1122)
Q Consensus 676 l~g~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer--K~aE~~L~~se~~l~~l~e~~~~l 753 (1122)
+..+.....++.+. ++||..+|+.++..|++|.+|.+.+++++++|||++ ++.+.++.+.+..+..+.+....
T Consensus 131 l~~~~~~~~e~~~~----~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~- 205 (258)
T 3p7n_A 131 VREHKPVLVEILNY----KKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLE- 205 (258)
T ss_dssp HHHTCCEEEEEEEE----CTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHcCCCeEEEEEEE----cCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHH-
Confidence 76665554444443 789999999999999999999999999999999999 56666655555555443332221
Q ss_pred CCCeEEecCCCCeeeeehhHHHhcCCChHHHhhh
Q 001215 754 IPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIER 787 (1122)
Q Consensus 754 i~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk 787 (1122)
++.....| ..|....+.+|++..++...
T Consensus 206 ---i~~~~~~g---~~~~eia~~l~~s~~tv~~~ 233 (258)
T 3p7n_A 206 ---VTTLVASG---LRNKEVAARLGLSEKTVKMH 233 (258)
T ss_dssp ---HHHHHHTT---CCHHHHHHHHTCCHHHHHHH
T ss_pred ---HHHHHHcC---CCHHHHHHHHCcCHHHHHHH
Confidence 11111123 37899999999999887653
No 41
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.60 E-value=7.6e-15 Score=142.80 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=102.3
Q ss_pred HHHHHhcCccEEEecCCC---cEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEE
Q 001215 614 VRLIETAAVPILAVDASG---NVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRA 690 (1122)
Q Consensus 614 ~~lie~a~~gI~~~D~dG---~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~ 690 (1122)
+.++++++++|+++|.+| +|+++|+++++++||+.++++|+++..+.++.........+...+..+.....++..
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-- 79 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQN-- 79 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE--
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEE--
Confidence 357899999999999976 999999999999999999999999987777665555445555555544443334333
Q ss_pred eCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhh
Q 001215 691 FGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGI 746 (1122)
Q Consensus 691 ~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l 746 (1122)
.++||..+|+.++..|+++.+ +.+++++++|||++|++|++|+.++++++.+
T Consensus 80 --~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 80 --YKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp --ECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred --EecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 378999999999999999866 8899999999999999999999999888764
No 42
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.60 E-value=7.3e-15 Score=140.41 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEE
Q 001215 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLR 689 (1122)
Q Consensus 610 e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 689 (1122)
+++|+.++++++++|+++|.+|+|+++|+++++++||+.++++|+++.++.+++........+...+..+.....++..
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 82 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVN- 82 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE-
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEE-
Confidence 4678899999999999999999999999999999999999999999998888766555444555555555443334433
Q ss_pred EeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhH
Q 001215 690 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQK 730 (1122)
Q Consensus 690 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK 730 (1122)
.++||..+|+.++..|++|.+|.+.+++++++|||++|
T Consensus 83 ---~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 83 ---RRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp ---ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred ---EcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 37899999999999999999999999999999999975
No 43
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.59 E-value=8.2e-15 Score=146.78 Aligned_cols=140 Identities=10% Similarity=0.093 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhcCccEEEec-CCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcce-eEEE
Q 001215 609 ITNEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEER-NVEI 686 (1122)
Q Consensus 609 ~e~~l~~lie~a~~gI~~~D-~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~-~~e~ 686 (1122)
.+++|+.+++++|++|+++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++..+... ..+.
T Consensus 15 ~~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 15 AAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 34678999999999999999 9999999999999999999 899999999999887777777888888544442 2333
Q ss_pred EEEEeCCCCC-CCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCC
Q 001215 687 KLRAFGPRET-SGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPS 751 (1122)
Q Consensus 687 ~l~~~~~~~d-G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~ 751 (1122)
.+.... ..+ |..+|+.++..|+++.+|.+.|++++++|||++|++|+++++....++..++++.
T Consensus 93 ~~~~~~-~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~~ 157 (158)
T 3k3c_A 93 RLQTDY-DGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVR 157 (158)
T ss_dssp EEEEES-SSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEecc-CCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333221 223 7789999999999999999999999999999999999999999999988887764
No 44
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.58 E-value=6e-15 Score=140.95 Aligned_cols=115 Identities=7% Similarity=0.095 Sum_probs=98.7
Q ss_pred HHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHc-CCcceeEEEEEEEe
Q 001215 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL-GIEERNVEIKLRAF 691 (1122)
Q Consensus 613 l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~-g~~~~~~e~~l~~~ 691 (1122)
+..+++++++.|+.+|.+|+++++|+++++++||++++++|+++.+++||++.+.+...+..++. ++.....+++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~-- 81 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR-- 81 (121)
T ss_dssp ----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE--
T ss_pred ccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE--
Confidence 45688999999999999999999999999999999999999999999999999999999888885 344445555544
Q ss_pred CCCCCCCeEEEEEEEEEecCC-CCCEEEEEEEEEcchhhHH
Q 001215 692 GPRETSGPVILVVNACCTQDT-KENVIGVCFVGQDITGQKL 731 (1122)
Q Consensus 692 ~~~~dG~~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ 731 (1122)
++||..+|+.+++.|++|. +|++.+++++.+|||++|+
T Consensus 82 --~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 82 --SKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp --CTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred --ecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 7899999999999999998 8899999999999999986
No 45
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.58 E-value=2.1e-15 Score=154.25 Aligned_cols=125 Identities=15% Similarity=0.037 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCccEEEecCC---CcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEE
Q 001215 610 TNEMVRLIETAAVPILAVDAS---GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEI 686 (1122)
Q Consensus 610 e~~l~~lie~a~~gI~~~D~d---G~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~ 686 (1122)
.++|+.++++++++|+++|.+ |+|+++|+++++++||+.++++|+++.+++++++.......+..++..+.....++
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 85 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVL 85 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEE
Confidence 457889999999999999999 99999999999999999999999999999998888877777777776665554444
Q ss_pred EEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHh
Q 001215 687 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTR 738 (1122)
Q Consensus 687 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~ 738 (1122)
... +++|..+|+.++..|++|.+|.+.|++++++|||++|++|+++..
T Consensus 86 ~~~----~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~~ 133 (176)
T 4hia_A 86 RNY----RANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAAA 133 (176)
T ss_dssp EEE----CTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHHH
T ss_pred EEE----cCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHHH
Confidence 443 679999999999999999999999999999999999999998443
No 46
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.57 E-value=8.9e-15 Score=147.17 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHH
Q 001215 599 RIEKIDELRIITNEMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (1122)
Q Consensus 599 ~~~~~~eL~~~e~~l~~lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~ 675 (1122)
.++.+++++..+++++.++++++++|+++|. +|+|+++|+++++++||+.++++|+++.+++++++.......+...
T Consensus 23 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 102 (166)
T 3ue6_A 23 PSKANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNA 102 (166)
T ss_dssp --------CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHH
Confidence 3455666777778999999999999999999 7999999999999999999999999999999888877777777777
Q ss_pred HcCCcceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhh
Q 001215 676 FLGIEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDY 743 (1122)
Q Consensus 676 l~g~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l 743 (1122)
+..+.....++.+. +++|..+|+.++..|+++.+|.+.|++++++|||++|+++.. .+.+..|
T Consensus 103 ~~~~~~~~~e~~~~----~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~-~e~~~~y 165 (166)
T 3ue6_A 103 ITKGVDTSVCLLNY----RQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV-NEQNIEY 165 (166)
T ss_dssp HHHTCCEEEEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH-HHHGGGC
T ss_pred HhcCCceEEEEEEE----cCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH-Hhhhhcc
Confidence 76655544444443 679999999999999999999999999999999999998877 3334333
No 47
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.56 E-value=1.7e-14 Score=136.80 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcC--CcccccccCCchHHHHHHHHHHHcCCccee
Q 001215 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG--TALVDLVAGDSVDVVKNMLSSAFLGIEERN 683 (1122)
Q Consensus 606 L~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG--~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~ 683 (1122)
|+.++++|+.+++++++++|.+|.+|+++++|+++.+++|++.++++| ..+.++++|++.+.+...+..++.++....
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFD 81 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCce
Confidence 566778899999999999999999999999999999999999999999 566788999999999999999998887655
Q ss_pred EEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHH
Q 001215 684 VEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKL 731 (1122)
Q Consensus 684 ~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ 731 (1122)
.++++. +++|..+|+.+++.|+++.+|.+.+++++++|||++|+
T Consensus 82 ~e~~~~----~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 82 VEYRIV----RPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred EEEEEE----CCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 555554 67899999999999999999999999999999999985
No 48
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.54 E-value=1.3e-14 Score=150.49 Aligned_cols=141 Identities=11% Similarity=0.155 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCccEEEec-CCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCccee-EE
Q 001215 608 IITNEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERN-VE 685 (1122)
Q Consensus 608 ~~e~~l~~lie~a~~gI~~~D-~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~-~e 685 (1122)
..+++|+.+++++|++|+++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++..+.... .+
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 111 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccc
Confidence 445689999999999999999 9999999999999999999 8999999999988776666667777775444322 22
Q ss_pred EEEEEeCCCC-C-CCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHH----HHhHhhhhhhhhcCCCC
Q 001215 686 IKLRAFGPRE-T-SGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDK----YTRIQGDYVGIVSSPSA 752 (1122)
Q Consensus 686 ~~l~~~~~~~-d-G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~----L~~se~~l~~l~e~~~~ 752 (1122)
+.+... ++ + |..+|+.++..|++|.+|.+.|++++++|||++|++|++ +++++++++.++++.+.
T Consensus 112 ~~~~~~--~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~~ 182 (185)
T 3kx0_X 112 WRLQTD--YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV 182 (185)
T ss_dssp EEEC----------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC----------------------
T ss_pred eeEEee--ccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333221 22 2 788999999999999999999999999999999999999 99999999999987764
No 49
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.52 E-value=4.2e-14 Score=140.90 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=85.3
Q ss_pred ecHHHHHHHHHHHHHHHhhcCCCC-CCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCCC----C
Q 001215 998 GDKLRLQQVLSDFLTNALIFTPAF-EGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQG----A 1072 (1122)
Q Consensus 998 ~D~~~L~QVL~NLL~NAik~t~~~-~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~----~ 1072 (1122)
.|...+.+++.||+.||++|+... +++.|.|++...++ .+.|+|+|+|+||+ .++++|++|.. .
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~---------~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~ 103 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG---------VVHLTVRDEGVGIP--DIEEARQPLFTTKPEL 103 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT---------EEEEEEEECSSCCS--CHHHHTCCC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC---------EEEEEEEECCCCcC--hHHHhhcccccCCCCC
Confidence 478899999999999999999731 15699999888777 89999999999999 78899999832 2
Q ss_pred CCccchHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecCCCCCC
Q 001215 1073 SREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKD 1117 (1122)
Q Consensus 1073 ~GtGLGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~~~~~~ 1117 (1122)
.|.|+||++|+++++ ++.+++.+++|| +|++.||..+...
T Consensus 104 ~~~GlGL~iv~~~~~----~i~~~~~~~~Gt-~v~~~lp~~~~~~ 143 (145)
T 1th8_A 104 ERSGMGFTIMENFMD----EVIVESEVNKGT-TVYLKKHGIHHHH 143 (145)
T ss_dssp CCCSCHHHHHHHHSS----EEEEEEETTTEE-EEEEEECCC----
T ss_pred CCCcchHHHHHHHHh----eEEEEeCCCCCE-EEEEEEecccccc
Confidence 689999999999988 999999988776 7888888876543
No 50
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.52 E-value=5.2e-14 Score=134.85 Aligned_cols=123 Identities=12% Similarity=0.083 Sum_probs=98.8
Q ss_pred HHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeC
Q 001215 616 LIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFG 692 (1122)
Q Consensus 616 lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~ 692 (1122)
++++++++|+++|. +|+|+++|+++++++|++.++++|+++.++++++........+...+..+.....++.+.
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--- 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY--- 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE---
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE---
Confidence 46789999999999 999999999999999999999999999999988877777777777776666554444443
Q ss_pred CCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhh
Q 001215 693 PRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGD 742 (1122)
Q Consensus 693 ~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~ 742 (1122)
+++|..+|+.++..|+++.+|.+.|++++++|||++|++|++....+.+
T Consensus 79 -~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 79 -KKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp -CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred -cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 6799999999999999999999999999999999999999998877654
No 51
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.51 E-value=2.5e-13 Score=152.46 Aligned_cols=223 Identities=14% Similarity=0.051 Sum_probs=153.5
Q ss_pred HHHhcCccEEEecCC-CcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHH--------------HcCCc
Q 001215 616 LIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA--------------FLGIE 680 (1122)
Q Consensus 616 lie~a~~gI~~~D~d-G~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~--------------l~g~~ 680 (1122)
+++++..-+++++.+ |+|+|+|+.+..++||+.++++|+++.+++||+|.+.+...+... .....
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~~ 110 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAP 110 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHTCTTTCCCCC----------CCC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhhcccCCCCcCCCcccccccCCCC
Confidence 466666677888886 999999999999999999999999999999999999887754110 01122
Q ss_pred ceeEEEEEEEeCCCCCCCeEEEEEEEEEe--cC---CCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCC
Q 001215 681 ERNVEIKLRAFGPRETSGPVILVVNACCT--QD---TKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIP 755 (1122)
Q Consensus 681 ~~~~e~~l~~~~~~~dG~~~~v~v~~~pi--~d---~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~ 755 (1122)
.+.+-++++...-.++.++..+.+.+... .. .++....++.+.+=.+..+..+ ..+.. ..
T Consensus 111 ~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~-----------~~~~~-~~--- 175 (317)
T 4dj3_A 111 AKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPR-----------IPVDK-RI--- 175 (317)
T ss_dssp CCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSC-----------CCGGG-CE---
T ss_pred CceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCC-----------cccCC-Cc---
Confidence 33344444432112233455555554322 11 1223333333322221111000 01111 12
Q ss_pred CeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCc---ceeEEEE
Q 001215 756 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA---DKILFGF 832 (1122)
Q Consensus 756 ~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~---~~~e~~~ 832 (1122)
-+...+.+|+++++|+++..++||.++|++|+.. .++.||+|...+...+..++.++.. ...++++
T Consensus 176 Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~-----------~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~ 244 (317)
T 4dj3_A 176 FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSI-----------LTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRF 244 (317)
T ss_dssp EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBG-----------GGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEE
T ss_pred eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCH-----------HHeECHHHHHHHHHHHHHHHHcCCCccccceEEEE
Confidence 3677899999999999999999999999999974 4677899999999999999887554 4689999
Q ss_pred EccCCCEEEEEEEEeeeeCC-CCCEEEEEEeee
Q 001215 833 FDQQGKYVEALLSANKRTNA-EGKISGILCFLH 864 (1122)
Q Consensus 833 ~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~ 864 (1122)
+++||.++|+.....++.|. .+++..++|.-+
T Consensus 245 ~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~ 277 (317)
T 4dj3_A 245 CTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHK 277 (317)
T ss_dssp ECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEE
T ss_pred EccCCCEEEEEEEEEEEECCCCCcccEEEEEEE
Confidence 99999999999999999886 566666676655
No 52
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.50 E-value=4.5e-14 Score=166.46 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=92.3
Q ss_pred EEecHHHHHHHHHHHHHHHhhcCCCCCCC---eEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--
Q 001215 996 LHGDKLRLQQVLSDFLTNALIFTPAFEGS---SIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ-- 1070 (1122)
Q Consensus 996 v~~D~~~L~QVL~NLL~NAik~t~~~~g~---~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~-- 1070 (1122)
+.+|+.+|.|||.||+.||++|++ .++ .|.|++...+.. ...+.|+|+|||+||+++.+.++|++|.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~--~gg~~p~I~I~i~~~~~~------~~~~~I~V~DnG~GI~~e~l~~iF~~f~~t 97 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATD--VHGILPNIKITIDLIDDA------RQIYKVNVVDNGIGIPPQEVPNAFGRVLYS 97 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTG--GGTCCCEEEEEEEEEETT------TTEEEEEEECCSCCCCGGGHHHHHHCCCCC
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhh--cCCCceEEEEEEEECCCc------CcEEEEEEEECCCCCCHHHHHHHhcccccc
Confidence 456889999999999999999998 455 788888765410 0178999999999999999999999972
Q ss_pred -------CCCCccchHHHHHHHHHHcCcE-EEEEecCCc-e-EEEEEEEecCC
Q 001215 1071 -------GASREGLGLYISQKLVKLMNGT-VQYIREAER-S-SFLILIEFPLA 1113 (1122)
Q Consensus 1071 -------~~~GtGLGL~I~r~ive~~gG~-I~v~s~~gg-~-tF~~~l~LP~~ 1113 (1122)
..+|+||||++|+.+++.|||+ |.+.|.+++ + +|+|+|++|..
T Consensus 98 sk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 98 SKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp -CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTT
T ss_pred cccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccc
Confidence 2358999999999999999999 999998775 3 78888888864
No 53
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.50 E-value=3.7e-14 Score=134.36 Aligned_cols=109 Identities=7% Similarity=0.033 Sum_probs=98.4
Q ss_pred hcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCCC
Q 001215 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETSG 698 (1122)
Q Consensus 619 ~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~ 698 (1122)
.+++.|+..|.+|+++++|+++++++||++++++|+++.+++||++.+.+...+..++.++.....+++++ +++|.
T Consensus 7 ~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~----~~dG~ 82 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRML----AKHGG 82 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEE----CTTSS
T ss_pred CCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEE----ecCCC
Confidence 35678999999999999999999999999999999999999999999999999999888776655555554 78999
Q ss_pred eEEEEEEEEEecCC-CCCEEEEEEEEEcchhhHH
Q 001215 699 PVILVVNACCTQDT-KENVIGVCFVGQDITGQKL 731 (1122)
Q Consensus 699 ~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ 731 (1122)
.+|+.+++.|++|. +|.+.+++++.+|||++|+
T Consensus 83 ~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 83 YVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999998 8999999999999999885
No 54
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.50 E-value=5.3e-14 Score=141.30 Aligned_cols=129 Identities=11% Similarity=0.067 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCccee
Q 001215 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERN 683 (1122)
Q Consensus 604 ~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~ 683 (1122)
.++++.+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++.+++++ ..+.+...+..++.++....
T Consensus 15 ~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~ 93 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSF 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCcee
Confidence 46778888899999999999999999999999999999999999999999999999988 77788888999998765432
Q ss_pred EEEEE-------EEe-CCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHH
Q 001215 684 VEIKL-------RAF-GPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVM 733 (1122)
Q Consensus 684 ~e~~l-------~~~-~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE 733 (1122)
..++. +.. ...++|..+|+.++..|++|.+|++.|++.+++|||+++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 22111 111 123567888999999999999999999999999999998764
No 55
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.50 E-value=4.7e-14 Score=136.74 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHH
Q 001215 597 DDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (1122)
Q Consensus 597 ~~~~~~~~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l 676 (1122)
+++++++++|++.+++|+.++++++++|+++|.+|+|++||+++++++||+.+|++|+++.+++++++.......+....
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~ 81 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYM 81 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999988887766555555554
Q ss_pred cCCcc----eeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 677 LGIEE----RNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 677 ~g~~~----~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
..+.. ...++.. .++||..+|+.++..|+.+. ...+++++++|||
T Consensus 82 ~~~~~~~~~~~~e~~~----~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 82 ATGEKRIIGIDRVVSG----QRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp HHCCCSSTTSCEEEEE----ECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred hcCCccccCCeeEEEE----EeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 33321 1223333 37899999999999999763 3456899999998
No 56
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.50 E-value=2.7e-13 Score=131.73 Aligned_cols=124 Identities=9% Similarity=0.102 Sum_probs=97.7
Q ss_pred hhhcCCCCCCCCeEEecCCC---CeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhc
Q 001215 745 GIVSSPSALIPPIFMTDEDG---RCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS 821 (1122)
Q Consensus 745 ~l~e~~~~li~~I~~~D~dg---~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~ 821 (1122)
.+++++++ +|+++|.+| +|+++|+++++++||+++|++|++.. . +.+++........+...+.
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~----------l~~~~~~~~~~~~~~~~~~ 68 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-F----------LQGKHTDPAEVDNIRTALQ 68 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-G----------GCCTTCCHHHHHHHHHHHH
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-h----------hCCCCCCHHHHHHHHHHHH
Confidence 46778887 899999976 99999999999999999999998752 1 2223323333345555666
Q ss_pred CCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHHHHHH
Q 001215 822 GQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAA 884 (1122)
Q Consensus 822 g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~ae~~~ 884 (1122)
.+.....++.+.++||+.+|+.++..|+.+.+ +.+++++++|||++|++|++++++.++..
T Consensus 69 ~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~ 129 (132)
T 2pr5_A 69 NKEPVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEIT 129 (132)
T ss_dssp HTCCEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 66677888999999999999999999998766 88899999999999999999887766543
No 57
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.49 E-value=4.7e-14 Score=168.05 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=91.3
Q ss_pred EEec-HHHHHHHHHHHHHHHhhcCCCCCCC---eEEEEEEecc---cccCccceeEEEEEEEEcCCCCCChhhhhhhcCC
Q 001215 996 LHGD-KLRLQQVLSDFLTNALIFTPAFEGS---SIAFRVIPQK---ERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYH 1068 (1122)
Q Consensus 996 v~~D-~~~L~QVL~NLL~NAik~t~~~~g~---~I~I~v~~~~---~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~ 1068 (1122)
+.+| +.+|.|||.||+.||++|++ .++ .|.|++...+ + .+.|+|.|||+||+++.+.++|++
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~--~gg~~p~I~I~i~~~~~~~~---------~~~I~V~DnG~GI~~e~l~~iF~~ 92 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATD--VHGILPNIKITIDLIDDARQ---------IYKVNVVDNGIGIPPQEVPNAFGR 92 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTT--TTTCCCCCEEEEEEEETTTT---------EEEEEEECCSCCCCGGGSHHHHTS
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHh--ccCCCeEEEEEEEECCCcCc---------eEEEEEEECCCCCCHHHHHHHhcc
Confidence 4444 59999999999999999998 455 7888887655 3 789999999999999999999999
Q ss_pred C---------CCCCCccchHHHHHHHHHHcCcE-EEEEecCCc-e-EEEEEEEecCC
Q 001215 1069 S---------QGASREGLGLYISQKLVKLMNGT-VQYIREAER-S-SFLILIEFPLA 1113 (1122)
Q Consensus 1069 f---------~~~~GtGLGL~I~r~ive~~gG~-I~v~s~~gg-~-tF~~~l~LP~~ 1113 (1122)
| ...+|+||||++|+.+++.|||+ |++.|.+++ + +|+|+|++|..
T Consensus 93 f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 93 VLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp CCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETT
T ss_pred ccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccc
Confidence 8 23368999999999999999999 999998765 3 78888888864
No 58
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.48 E-value=1.6e-13 Score=137.97 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecC---CCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccc
Q 001215 727 TGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRV 803 (1122)
Q Consensus 727 TerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l 803 (1122)
..+++++.++.+.+..++.+++++++ +|+++|. +|+++++|+++++++||++++++|+++. .+
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-----------~l 86 (166)
T 3ue6_A 21 DNPSKANRILEDPDYSLVKALQMAQQ---NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-----------FL 86 (166)
T ss_dssp ----------CCCCCHHHHHHHHTTS---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GG
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCc---eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-----------he
Confidence 45677888889999999999999999 8999999 7999999999999999999999998742 22
Q ss_pred cCcchHHHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHH
Q 001215 804 KNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 875 (1122)
Q Consensus 804 ~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~ 875 (1122)
.+++........+...+..+.....++.+.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 87 QGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 334444555666677777777788899999999999999999999999999999999999999999987754
No 59
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.48 E-value=2.7e-13 Score=135.79 Aligned_cols=132 Identities=10% Similarity=0.042 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCccEEEecCCC---cEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEE
Q 001215 610 TNEMVRLIETAAVPILAVDASG---NVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEI 686 (1122)
Q Consensus 610 e~~l~~lie~a~~gI~~~D~dG---~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~ 686 (1122)
++.++.++++++++|+++|.+| +|+++|+++++++|++.++++|+++.+++++.........+..++..+.....++
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 4578899999999999999999 9999999999999999999999999999888777766666667776655544444
Q ss_pred EEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhh
Q 001215 687 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVG 745 (1122)
Q Consensus 687 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~ 745 (1122)
.+. +++|..+|+.++..|+.+.+|.+.|++++++|||++|+++++++..++.++.
T Consensus 104 ~~~----~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~ 158 (162)
T 3sw1_A 104 RNY----RKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPKP 158 (162)
T ss_dssp EEE----CTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC----
T ss_pred EEE----CCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 443 6789999999999999999999999999999999999999999998877754
No 60
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.48 E-value=1.1e-13 Score=132.11 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=97.5
Q ss_pred HhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHH
Q 001215 739 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 818 (1122)
Q Consensus 739 se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~ 818 (1122)
++++|+.++++.++ +|+++|.+|+|+++|+++++++||+++|++|+... . +.+++........+..
T Consensus 3 ~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~-~----------l~~~~~~~~~~~~~~~ 68 (120)
T 2gj3_A 3 LPEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNES-I----------LSNGTTPRLVYQALWG 68 (120)
T ss_dssp CHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGG-G----------GCCTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHH-H----------cCCCCCCHHHHHHHHH
Confidence 34678889999998 89999999999999999999999999999998742 1 2222333333444555
Q ss_pred HhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHH
Q 001215 819 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPEL 870 (1122)
Q Consensus 819 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerk 870 (1122)
.+..+..+..++..+++||+.+|+.++..|+.|.+|.+.+++++++|||++|
T Consensus 69 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 69 RLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp HHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred HHHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 6666667788899999999999999999999999999999999999999753
No 61
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.47 E-value=1.4e-13 Score=131.32 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=98.5
Q ss_pred hhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhc-
Q 001215 743 YVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS- 821 (1122)
Q Consensus 743 l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~- 821 (1122)
+..+++++++ .|+..|.+|+++++|+++++++||++++++|+.+ ..+.||++...+...+..++.
T Consensus 4 ~~ll~e~~~d---~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~-----------~~~i~p~d~~~~~~~~~~~~~~ 69 (121)
T 3f1p_B 4 KGLNVCQPTR---FISRHNIEGIFTFVDHRCVATVGYQPQELLGKNI-----------VEFCHPEDQQLLRDSFQQVVKL 69 (121)
T ss_dssp ----CCCCCE---EEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBG-----------GGGBCTTTHHHHHHHHHHHTTS
T ss_pred ccceecCCCc---eEEEECCCceEEEECcchhhhhCCChHHHcCCCH-----------HHeECHHHHHHHHHHHHHHHhc
Confidence 4567888888 7999999999999999999999999999999874 356778999988888888885
Q ss_pred CCCcceeEEEEEccCCCEEEEEEEEeeeeCC-CCCEEEEEEeeecccHHHH
Q 001215 822 GQDADKILFGFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASPELQ 871 (1122)
Q Consensus 822 g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DITerkq 871 (1122)
++.....++++++++|+++|+..+..|+.|. +|.+.+++++.+|||++|+
T Consensus 70 ~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 70 KGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred CCCcccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 4556889999999999999999999999987 8899999999999998775
No 62
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.46 E-value=3.3e-13 Score=137.78 Aligned_cols=122 Identities=7% Similarity=-0.005 Sum_probs=106.5
Q ss_pred hhhhhhhhcCCCCCCCCeEEecCC---CCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHH
Q 001215 740 QGDYVGIVSSPSALIPPIFMTDED---GRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVM 816 (1122)
Q Consensus 740 e~~l~~l~e~~~~li~~I~~~D~d---g~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l 816 (1122)
.++++.+++++++ +|+++|.+ |+|+++|+++++++||++++++|+... .+.+++........+
T Consensus 6 ~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~-----------~~~~~~~~~~~~~~~ 71 (176)
T 4hia_A 6 FEKIRAVFDRSGV---ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR-----------FLQRGDENAQARADI 71 (176)
T ss_dssp HHHHHHHHHHCSS---CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-----------GGCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCC---cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc-----------eeeCCCCCHHHHHHH
Confidence 4567889999998 89999999 999999999999999999999998742 233455555666777
Q ss_pred HHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHH
Q 001215 817 NKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 875 (1122)
Q Consensus 817 ~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~ 875 (1122)
...+..+.....++...+++|+.+|+.++..|+.+.+|.+.+++++++|||++|+++++
T Consensus 72 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 72 RDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp HHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred HHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 77777778888899999999999999999999999999999999999999999998877
No 63
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.46 E-value=1.7e-12 Score=145.28 Aligned_cols=228 Identities=13% Similarity=0.091 Sum_probs=142.7
Q ss_pred HHHHhcCccEEEecCC-CcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHH-H------cC--------
Q 001215 615 RLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA-F------LG-------- 678 (1122)
Q Consensus 615 ~lie~a~~gI~~~D~d-G~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~-l------~g-------- 678 (1122)
.+++++..-+++++.+ |+|+|+++.+..++||+.+|++|+++.+++||+|.+.+...+... + .+
T Consensus 19 lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~~ 98 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQEC 98 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTSSCBCC------------
T ss_pred HHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccccCCCCcccccCcccccccc
Confidence 3566777778889986 999999999999999999999999999999999999888765310 0 00
Q ss_pred CcceeEEEEEEEeCC-CCCCCeEEEEEEEEE--ecCCCCC--EEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCC
Q 001215 679 IEERNVEIKLRAFGP-RETSGPVILVVNACC--TQDTKEN--VIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSAL 753 (1122)
Q Consensus 679 ~~~~~~e~~l~~~~~-~~dG~~~~v~v~~~p--i~d~~G~--v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~l 753 (1122)
...+.+.++++..+. .+..+..++.+.+.. +.+.+|. ....+..+.-+..- .+.. ....+. ..
T Consensus 99 ~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~------~~~p----~~~~~~-~~- 166 (309)
T 3gdi_A 99 MEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSG------YEAP----RIPPEK-RI- 166 (309)
T ss_dssp --CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCT------TSSS----CCCGGG-CE-
T ss_pred CCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCC------ccCC----CcCCCC-ce-
Confidence 012333444432210 122344444444432 3344444 22223332222100 0000 000011 11
Q ss_pred CCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCc-ce-eEEE
Q 001215 754 IPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA-DK-ILFG 831 (1122)
Q Consensus 754 i~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~-~~-~e~~ 831 (1122)
-+...+.+|+++++|+++..++||.++|++|+.. .++.||+|...+...+..++.++.. .. .+++
T Consensus 167 --Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~-----------~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR 233 (309)
T 3gdi_A 167 --FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPV-----------LVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIR 233 (309)
T ss_dssp --EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBH-----------HHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred --EEEEecCCCeEEEECcccccccCcCHHHHcCCCH-----------HHhCCHHHHHHHHHHHHHHHhcCCceeeceEEE
Confidence 3677899999999999999999999999999874 4677899999999999998885544 44 5899
Q ss_pred EEccCCCEEEEEEEEeeeeCC-CCCEEEEEEeeeccc
Q 001215 832 FFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVAS 867 (1122)
Q Consensus 832 ~~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DIT 867 (1122)
++++||.++|+......+.|. .+++..++|.-+.++
T Consensus 234 ~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 234 FRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp EECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 999999999999999888875 577777777765554
No 64
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.45 E-value=2.1e-13 Score=128.89 Aligned_cols=111 Identities=8% Similarity=-0.047 Sum_probs=95.9
Q ss_pred cCccEEEec-CCCcEEeccHHHHHHcCCCchhhcCCc-ccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCC
Q 001215 620 AAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTA-LVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETS 697 (1122)
Q Consensus 620 a~~gI~~~D-~dG~Iv~~N~~~~~l~G~s~eeliG~~-~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG 697 (1122)
+++++|.+| .+|+++|+|+++++++||++++++|.. +.+++||++.+.+...+..++.++.....+++++ ++||
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~----~~dG 77 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRAL----HRDG 77 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEE----CTTS
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEE----cCCC
Confidence 578999999 679999999999999999999999842 3478999999999999999998887655555554 7799
Q ss_pred CeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHH
Q 001215 698 GPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMD 734 (1122)
Q Consensus 698 ~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~ 734 (1122)
..+|+.+++.|++|.+|++.+++++.+|||++|.+|+
T Consensus 78 ~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 78 HYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999999875
No 65
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.45 E-value=8.4e-13 Score=127.84 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCc
Q 001215 727 TGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNH 806 (1122)
Q Consensus 727 TerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~ 806 (1122)
|+++++|++|++++.+|+.+++++++ +|+++|.+|+|++||+++++++||+++|++|+++. .+.++
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~-----------~l~~~ 67 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLR-----------ILMPE 67 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-----------GGSCT
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHH-----------HHCCc
Confidence 78999999999999999999999999 89999999999999999999999999999999752 22233
Q ss_pred chHHHHHHHHHHHhcCCCc----ceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 807 DTLTKLRIVMNKVISGQDA----DKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 807 d~~~~~~~~l~~~l~g~~~----~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
+........+......... ...++...++||+.+|+.++..|+.+.+ ..+++++++|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 68 PYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp THHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred hhHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 4433333344443332221 3457788999999999999999997643 345889999998
No 66
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.44 E-value=1.4e-12 Score=146.45 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=151.6
Q ss_pred HHhcCccEEEecCC-CcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHH---------------HcCCc
Q 001215 617 IETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA---------------FLGIE 680 (1122)
Q Consensus 617 ie~a~~gI~~~D~d-G~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~---------------l~g~~ 680 (1122)
++++..-++++..+ |+|+|+++.+..++||+.++++|+++.+++||+|.+.+...+... .....
T Consensus 32 LqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~~~ 111 (320)
T 4dj2_A 32 LRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFTQ 111 (320)
T ss_dssp TSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCCTTTCCBTTC-------------
T ss_pred HhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhcccCCCCcccCcccccccccCCC
Confidence 56666667778875 999999999999999999999999999999999999887765321 00111
Q ss_pred ceeEEEEEEEeCCCCC--CCeEEEEEEEE--EecCCCCC--EEEEEEEEEcchhh-HHHHHHHHhHhhhhhhhhcCCCCC
Q 001215 681 ERNVEIKLRAFGPRET--SGPVILVVNAC--CTQDTKEN--VIGVCFVGQDITGQ-KLVMDKYTRIQGDYVGIVSSPSAL 753 (1122)
Q Consensus 681 ~~~~e~~l~~~~~~~d--G~~~~v~v~~~--pi~d~~G~--v~gvv~v~~DITer-K~aE~~L~~se~~l~~l~e~~~~l 753 (1122)
.+.+-++++... .++ .++.++.+.+. .+.+.+|. ....+..+.-+-.. +..+ +......
T Consensus 112 ~rsF~CRmr~~l-~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~------------i~~~~~~- 177 (320)
T 4dj2_A 112 EKSVFCRIRGGP-DRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPR------------IPPDKRI- 177 (320)
T ss_dssp CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSC------------CCGGGCE-
T ss_pred ceeEEEEEEEec-cCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccc------------ccCCCce-
Confidence 233334433221 122 23445554432 23455555 22333332222110 0000 0001112
Q ss_pred CCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCC-Ccc-eeEEE
Q 001215 754 IPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ-DAD-KILFG 831 (1122)
Q Consensus 754 i~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~-~~~-~~e~~ 831 (1122)
-+...+.+|+++++|+++..++||.++|++|+.. .++.||+|...+...+...+.++ ... ..+++
T Consensus 178 --Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~-----------~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR 244 (320)
T 4dj2_A 178 --FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPV-----------LLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIR 244 (320)
T ss_dssp --EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEE
T ss_pred --EEEEecCCceEEEcCcceeccCCcChHHHcCCcH-----------HHhCCHHHHHHHHHHHHHHHhcCCCcccceEEE
Confidence 3677899999999999999999999999999874 46788999999999999998854 344 46999
Q ss_pred EEccCCCEEEEEEEEeeeeCC-CCCEEEEEEeeecccH
Q 001215 832 FFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASP 868 (1122)
Q Consensus 832 ~~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DITe 868 (1122)
++++||.++|+......+.|. .+++..++|.-+-++.
T Consensus 245 ~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 245 FCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp EECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred EEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 999999999999999888875 5777777877655543
No 67
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.44 E-value=7.2e-13 Score=123.34 Aligned_cols=113 Identities=18% Similarity=0.098 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEE
Q 001215 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLR 689 (1122)
Q Consensus 610 e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 689 (1122)
+++|+.++++++++++++|.+|+++++|+++++++|++.++++|+++.+++ |++.+.+...+..++.++.....+..+.
T Consensus 2 e~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCFV 80 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred hHHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEEE
Confidence 457889999999999999999999999999999999999999999999988 6666777788888887765433332332
Q ss_pred EeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 690 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 690 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
+++|..+|+.++..|+++.+|.+.|++++++|||
T Consensus 81 ----~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 81 ----RADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ----C--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ----cCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 6789999999999999999999999999999998
No 68
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.44 E-value=2.1e-13 Score=129.80 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=81.2
Q ss_pred hcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcc----eeEEEEEEEeCCC
Q 001215 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEE----RNVEIKLRAFGPR 694 (1122)
Q Consensus 619 ~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~----~~~e~~l~~~~~~ 694 (1122)
+++++|+++|.+|+|++||++++++|||++++++|+++..+++++........+......+.. ...++.. .+
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTG----KR 76 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEE----EC
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEE----Ee
Confidence 468999999999999999999999999999999999999988887766555555555433321 1223333 37
Q ss_pred CCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHh
Q 001215 695 ETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTR 738 (1122)
Q Consensus 695 ~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~ 738 (1122)
+||..+|+.++..|+.+. ...+++++++|||++|++|++|+.
T Consensus 77 ~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 77 RDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp TTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-----------
T ss_pred CCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHHHHHh
Confidence 899999999999999864 335789999999999999998754
No 69
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.43 E-value=3.7e-13 Score=127.36 Aligned_cols=124 Identities=11% Similarity=0.114 Sum_probs=95.1
Q ss_pred HHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHH
Q 001215 736 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 815 (1122)
Q Consensus 736 L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~ 815 (1122)
|++++++|+.++++++. ++|.+|.+|+++++|+++.+++|+++++++|... .+..+.+|++...+...
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~---------~~~~~~~~~d~~~~~~~ 69 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATED---------AYFQRVHPDDRARVRRE 69 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHH---------HHHHHBCTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccHH---------HHHhhcChhHHHHHHHH
Confidence 56778889999999998 8999999999999999999999999999887221 02345678888888888
Q ss_pred HHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHH
Q 001215 816 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQ 871 (1122)
Q Consensus 816 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq 871 (1122)
+..++.++.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||++|+
T Consensus 70 ~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 70 LDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp HHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred HHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 99999988888999999999999999999999999999999999999999999874
No 70
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.43 E-value=1e-12 Score=122.82 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEE
Q 001215 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKL 688 (1122)
Q Consensus 609 ~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l 688 (1122)
.+++++.++++++++++++|.+|+++++|+++++++|++.++++|+++..+.+++........+...+.++.....++.+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRM 84 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEE
Confidence 45678899999999999999999999999999999999999999999997777777777777777777666655445444
Q ss_pred EEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHH
Q 001215 689 RAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLV 732 (1122)
Q Consensus 689 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~a 732 (1122)
. +++|..+|+.++..|+.+.+|.+.|++++++|||++|+.
T Consensus 85 ~----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~l 124 (124)
T 3lyx_A 85 L----HKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKKE 124 (124)
T ss_dssp E----CTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC---
T ss_pred E----ccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhcC
Confidence 3 668999999999999999999999999999999999863
No 71
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.42 E-value=3.7e-13 Score=128.17 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCch-HHHHHHHHHHHcCCcceeEEEEEEE
Q 001215 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSV-DVVKNMLSSAFLGIEERNVEIKLRA 690 (1122)
Q Consensus 612 ~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~-~~~~~~l~~~l~g~~~~~~e~~l~~ 690 (1122)
.|+.+++++|++|+ +|.+|+|+++|+++++++||++++++|+++.++++++.. ..+...+...+.++.....++.++
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~- 81 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK- 81 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEE-
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEE-
Confidence 47889999999996 578999999999999999999999999999887765433 344444555554444444444433
Q ss_pred eCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHH
Q 001215 691 FGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLV 732 (1122)
Q Consensus 691 ~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~a 732 (1122)
++||..+|+.++..|+ +.+|...+++++++|||++|++
T Consensus 82 ---~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 82 ---RAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ---CTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ---eCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 7899999999999998 5666677899999999999986
No 72
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.42 E-value=1.4e-12 Score=121.33 Aligned_cols=111 Identities=13% Similarity=0.024 Sum_probs=95.3
Q ss_pred HHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeC
Q 001215 616 LIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFG 692 (1122)
Q Consensus 616 lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~ 692 (1122)
.+++++++++++|. +|+|+++|+++++++|++.++++|+++..+++++........+...+..+.....++.+.
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY--- 78 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE---
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe---
Confidence 57899999999999 999999999999999999999999999889888877777777777776666555444443
Q ss_pred CCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhH
Q 001215 693 PRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQK 730 (1122)
Q Consensus 693 ~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK 730 (1122)
+++|..+|+.++..|+++.+|.+.+++++++|||+++
T Consensus 79 -~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 -TKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp -CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred -cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 6799999999999999999999999999999999874
No 73
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.42 E-value=1.7e-12 Score=122.25 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCccEEEec---CCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeE
Q 001215 608 IITNEMVRLIETAAVPILAVD---ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNV 684 (1122)
Q Consensus 608 ~~e~~l~~lie~a~~gI~~~D---~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~ 684 (1122)
+.+++++.++++++++++++| .+|+++++|+++++++|++.++++|+++.+++++.........+...+..+.....
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCccee
Confidence 345678899999999999999 89999999999999999999999999999998887766666666666665554444
Q ss_pred EEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHH
Q 001215 685 EIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDK 735 (1122)
Q Consensus 685 e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~ 735 (1122)
++... +++|..+|+.++..|+.+.+|.+.|++++++|||++|++|++
T Consensus 83 ~~~~~----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLNY----KKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEEE----cCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 44332 678999999999999999999999999999999999988754
No 74
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.41 E-value=3e-12 Score=121.84 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeE
Q 001215 605 ELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNV 684 (1122)
Q Consensus 605 eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~ 684 (1122)
+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++.++.++.........+.....++ ....
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 83 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGE-PLRE 83 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTC-CEEE
T ss_pred HHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCC-cEEE
Confidence 467788899999999999999999999999999999999999999999999877655444333333444444433 3333
Q ss_pred EEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 685 EIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 685 e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
+..+ .++||..+|+.++..|+. +|+ ++++++|||
T Consensus 84 e~~~----~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTV----WTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEE----ECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEE----EecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 4333 378999999999999986 455 678899998
No 75
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.40 E-value=6.6e-13 Score=128.29 Aligned_cols=135 Identities=11% Similarity=-0.033 Sum_probs=115.1
Q ss_pred HHHHHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEE
Q 001215 613 MVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLR 689 (1122)
Q Consensus 613 l~~lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 689 (1122)
++.++++++++++++|. +|+++++|+++++++|++.++++|+++.+++++.+.......+...+..+.....++.+.
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINY 83 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEE
Confidence 45678999999999999 999999999999999999999999999999888887777777777776666544444443
Q ss_pred EeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCC
Q 001215 690 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSA 752 (1122)
Q Consensus 690 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~ 752 (1122)
+++|..+|+.++..|+++.+|.+.|++++++|||++|+ ++++.+.+.+++.++++++.
T Consensus 84 ----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (146)
T 2v0u_A 84 ----TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENIDE 141 (146)
T ss_dssp ----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ----ecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccHh
Confidence 67899999999999999999999999999999999999 77777778888877766543
No 76
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.40 E-value=8.4e-13 Score=124.07 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcc--cccccCCchHHHHHHHHHHHcCCcceeEEE
Q 001215 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTAL--VDLVAGDSVDVVKNMLSSAFLGIEERNVEI 686 (1122)
Q Consensus 609 ~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~--~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~ 686 (1122)
++++|+.+++++++++|.+|.+|+++++|+++.+++||++++++|+.. .+++||++.+.+...+..++.++.....++
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~ 81 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVY 81 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 467899999999999999999999999999999999999999888754 689999999999999999888777655555
Q ss_pred EEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 687 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 687 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
++. +++|..+|+.+.+.|+++.+|.+.+++++++|||
T Consensus 82 r~~----~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 82 RIV----TPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEE----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 554 7799999999999999999999999999999998
No 77
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.40 E-value=3e-12 Score=122.48 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=93.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhh--cCCcccccccCCchHHHHHHHH
Q 001215 596 VDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQA--IGTALVDLVAGDSVDVVKNMLS 673 (1122)
Q Consensus 596 ~~~~~~~~~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eel--iG~~~~dl~~~~~~~~~~~~l~ 673 (1122)
++++++++++|++++++|+.++++++++|+++|.+|+|++||+++++++||+++++ +|+++.++++ +...+...+.
T Consensus 2 ~t~r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~ 79 (126)
T 3bwl_A 2 NAERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLS 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999 5677777776 3333333332
Q ss_pred HHHcCCcceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 674 SAFLGIEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 674 ~~l~g~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
....+ ....++..+ .++||..+|+.++..++.+ +|.. +++++++|||
T Consensus 80 ~~~~~-~~~~~e~~~----~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 80 GFSVD-ERRKFEGLY----ERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp TCCTT-CEEEEEEEE----ECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred HHhcC-CCcceEEEE----EeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 22222 222233222 3789999999988887743 4443 5788999998
No 78
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.40 E-value=2.2e-12 Score=123.41 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=96.2
Q ss_pred hhcCCCCCCCCeEEecC---CCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcC
Q 001215 746 IVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG 822 (1122)
Q Consensus 746 l~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g 822 (1122)
++++++. +|+++|. +|+++++|+++++++|+++++++|+.+. .+.+++....+...+...+..
T Consensus 2 ~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 67 (128)
T 3t50_A 2 ASEFTLM---PMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-----------FLQGHGTDPAHVRAIKSAIAA 67 (128)
T ss_dssp CCCCCSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTSCHHHHHHHHHHHHT
T ss_pred ccccCcc---cEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-----------hhcCCccCHHHHHHHHHHHHc
Confidence 4566777 8999999 9999999999999999999999998742 223344445566667777777
Q ss_pred CCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHH
Q 001215 823 QDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQR 878 (1122)
Q Consensus 823 ~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~ 878 (1122)
+.....++.+.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++++.++
T Consensus 68 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~ 123 (128)
T 3t50_A 68 EKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEH 123 (128)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-------
T ss_pred CCCceeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhh
Confidence 77888899999999999999999999999999999999999999999999877554
No 79
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.39 E-value=1e-12 Score=123.48 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCccEEEecCC-CcEEeccHHHHHHcCCCchhhcCCc--ccccccCCchHHHHHHHHHHHcC
Q 001215 602 KIDELRIITNEMVRLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSAFLG 678 (1122)
Q Consensus 602 ~~~eL~~~e~~l~~lie~a~~gI~~~D~d-G~Iv~~N~~~~~l~G~s~eeliG~~--~~dl~~~~~~~~~~~~l~~~l~g 678 (1122)
++++|++.+++|+.+++++++++|.+|.+ |+++++|+++++++|++.++++|+. +.++++|++.+.+...+.....+
T Consensus 2 ~e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDG 81 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999999 9999999999999999999999988 66888999988888888775554
Q ss_pred CcceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 679 IEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 679 ~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
+. ...++++ .+++|..+|+.++..|+++.+|.+.+++++++|||
T Consensus 82 ~~-~~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 82 ES-ADVECRV----NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp CC-EEEEEEE----CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CC-ccEEEEE----EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 43 3334333 36789999999999999999999999999999998
No 80
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.38 E-value=7.1e-13 Score=125.45 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=95.7
Q ss_pred CeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEEEEcc
Q 001215 756 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQ 835 (1122)
Q Consensus 756 ~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~ 835 (1122)
.|+..|.+|+++++|+++++++||++++++|+.+ ..+.||++...+...+..++.++.....+++++++
T Consensus 11 ~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~-----------~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~ 79 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSA-----------YEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAK 79 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred EEEEECCCceEEEECcChhhhhCCCHHHHcCCch-----------hheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEec
Confidence 6889999999999999999999999999999864 35667899998999999998888878889999999
Q ss_pred CCCEEEEEEEEeeeeCC-CCCEEEEEEeeecccHHHH
Q 001215 836 QGKYVEALLSANKRTNA-EGKISGILCFLHVASPELQ 871 (1122)
Q Consensus 836 dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DITerkq 871 (1122)
+|+++|+..+..|+.|. +|.+.+++++.+|||++++
T Consensus 80 dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 80 HGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp TSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred CCCEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999999998 8999999999999998764
No 81
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.38 E-value=3.2e-12 Score=120.07 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=85.5
Q ss_pred cCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCC
Q 001215 620 AAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRET 696 (1122)
Q Consensus 620 a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~d 696 (1122)
++++|+++|. +|+|+++|+++++++||+.+|++|++...+.++.........+..++..+.....++..+ ++|
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~kd 77 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNY----RKD 77 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEE----CTT
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEE----cCC
Confidence 5789999994 799999999999999999999999998777766654444444555555444443344333 789
Q ss_pred CCeEEEEEEEEEecCCCCCEEEEEEEEEcchh
Q 001215 697 SGPVILVVNACCTQDTKENVIGVCFVGQDITG 728 (1122)
Q Consensus 697 G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITe 728 (1122)
|..+|+.++..|++|.+|++.+++++.+|||+
T Consensus 78 G~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 78 GTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 99999999999999999999999999999996
No 82
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.36 E-value=2.9e-12 Score=122.61 Aligned_cols=124 Identities=11% Similarity=0.058 Sum_probs=94.1
Q ss_pred cchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHh--hhhcccccccccccccc
Q 001215 725 DITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAI--ERMLIGEVFTVKNFGCR 802 (1122)
Q Consensus 725 DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeli--Gk~l~~~i~~~~~~~~~ 802 (1122)
|||++|++|++|++++++|+.+++++++ +|+++|.+|++++||+++++++||++++++ |+... .
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~-----------~ 66 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPD---MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEF-----------D 66 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGT-----------B
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCc---EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchh-----------h
Confidence 6899999999999999999999999999 899999999999999999999999999995 55432 1
Q ss_pred ccCcchHHHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 803 VKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 803 l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
+.+ +...+...+.... .+....++..+.++||+.+|+.++..++.+ +|.. +++++++|||
T Consensus 67 ~~~--~~~~~~~~~~~~~-~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 67 LMF--DAEDVQTQLSGFS-VDERRKFEGLYERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp TTC--CHHHHHHHHHTCC-TTCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred ccC--CHHHHHHHHHHHh-cCCCcceEEEEEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 122 2222222222222 223345667788999999999988888743 4444 5788999998
No 83
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.36 E-value=1.2e-12 Score=130.78 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=100.4
Q ss_pred HhHhhhhhhhhcCCCCCCCCeEEec-CCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHH
Q 001215 737 TRIQGDYVGIVSSPSALIPPIFMTD-EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 815 (1122)
Q Consensus 737 ~~se~~l~~l~e~~~~li~~I~~~D-~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~ 815 (1122)
...+++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++. ++++ +.....+...
T Consensus 13 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~-~~~~----------~~~~~~~~~~ 76 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYP----------ELEGQQIYEM 76 (158)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHH-HHSG----------GGGGTTHHHH
T ss_pred HHHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHH-HhCC----------chhHHHHHHH
Confidence 4556789999999998 899999 9999999999999999999 88998753 2222 3333345556
Q ss_pred HHHHhcCCCc-ceeEEEE--EccC--CCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHHHH
Q 001215 816 MNKVISGQDA-DKILFGF--FDQQ--GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQ 882 (1122)
Q Consensus 816 l~~~l~g~~~-~~~e~~~--~~~d--G~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~ae~ 882 (1122)
+..++..+.+ ...++.+ ...+ |..+|+.++..|+.+.+|.+.|++++++|||+++++++++++.+++
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~ 148 (158)
T 3k3c_A 77 LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEE 148 (158)
T ss_dssp HHHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHH
Confidence 7777754444 3333333 3322 7789999999999999999999999999999999999888765544
No 84
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.35 E-value=1.9e-12 Score=122.25 Aligned_cols=109 Identities=10% Similarity=-0.017 Sum_probs=96.4
Q ss_pred CeEEec-CCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEEEEc
Q 001215 756 PIFMTD-EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFD 834 (1122)
Q Consensus 756 ~I~~~D-~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~ 834 (1122)
++|.+| .+|+++++|+++++++||+++++.+... +..+.||++...+...+..++.++.....++++++
T Consensus 5 giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~----------~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~ 74 (115)
T 3h9w_A 5 IPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVED----------WATRMHPEDQEWVVNFCVKQSECGVDHEADYRALH 74 (115)
T ss_dssp EEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHH----------HHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHH----------HHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEc
Confidence 799999 6788899999999999999999887322 23567899999999999999998888899999999
Q ss_pred cCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHH
Q 001215 835 QQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYAL 874 (1122)
Q Consensus 835 ~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~ 874 (1122)
++|+++|+..+..++.|.+|++.+++++..|||++|++|.
T Consensus 75 ~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 75 RDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999999998874
No 85
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.35 E-value=1.8e-12 Score=129.70 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=89.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHH
Q 001215 595 SVDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSS 674 (1122)
Q Consensus 595 ~~~~~~~~~~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~ 674 (1122)
++++..+..++++..+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++.+++++.+.......+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (167)
T 1v9y_A 24 DAEVIMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRH 103 (167)
T ss_dssp ----------------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHH
Confidence 34445667777888888999999999999999999999999999999999999999999999999988877777677777
Q ss_pred HHcCCcc----eeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHh
Q 001215 675 AFLGIEE----RNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTR 738 (1122)
Q Consensus 675 ~l~g~~~----~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~ 738 (1122)
+..++.. ...++.+ .+++|..+|+.++..|+ +.+|.+ +++++++|||++|+++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 104 NREGGKARVEGMSRELQL----EKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp HHC----------CEEEE----ECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred HhhcCCCcccccceEEEE----EcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 7766543 1223333 26789999999999999 556665 599999999999999988764
No 86
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.34 E-value=3.2e-12 Score=127.84 Aligned_cols=132 Identities=12% Similarity=0.123 Sum_probs=108.7
Q ss_pred HhhhhhhhhcCCCCCCCCeEEecCCC---CeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHH
Q 001215 739 IQGDYVGIVSSPSALIPPIFMTDEDG---RCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 815 (1122)
Q Consensus 739 se~~l~~l~e~~~~li~~I~~~D~dg---~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~ 815 (1122)
+++.++.++++.+. +|+++|.+| +++++|+++.+++|++.++++|+.+. .+ .+++....+...
T Consensus 23 ~~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~----------~~~~~~~~~~~~ 88 (162)
T 3sw1_A 23 NAQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FL----------QGDDRDQLGRAR 88 (162)
T ss_dssp CHHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GG----------TTTCCCCHHHHH
T ss_pred hHHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-ee----------cCCCcCHHHHHH
Confidence 45678889999998 899999999 99999999999999999999998752 22 223333344455
Q ss_pred HHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHHHHHH
Q 001215 816 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAA 884 (1122)
Q Consensus 816 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~ae~~~ 884 (1122)
+...+..+.....++.+.+++|+.+|+.++..|+.+.+|.+.|++++++|||+++++++++++..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~ 157 (162)
T 3sw1_A 89 IRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPK 157 (162)
T ss_dssp HHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC---
T ss_pred HHHHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 666666677778889999999999999999999999999999999999999999999998887665543
No 87
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.32 E-value=3.3e-12 Score=121.32 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=92.2
Q ss_pred HHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCC
Q 001215 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGP 693 (1122)
Q Consensus 614 ~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~ 693 (1122)
+.++++++++|+++|.+|+|+++|+++++++|++.++++|+++.+++++++...+...+..+..++.. ..++.+.
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 76 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLE---- 76 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEE----
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEE----
Confidence 46789999999999999999999999999999999999999999999999988888888888877665 3444443
Q ss_pred CCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHh
Q 001215 694 RETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQ 740 (1122)
Q Consensus 694 ~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se 740 (1122)
+++|..+|+.++..+..+ +...+++++++|||++|+++++...+.
T Consensus 77 ~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 77 KKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp CTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred ccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 568999999999987665 335689999999999999998876653
No 88
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.32 E-value=1.1e-12 Score=158.34 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=91.8
Q ss_pred EEEecHHHHHHHHHHHHHHHhhcCCCCCCC---eEEEEEEecc-cccCccceeEEEEEEEEcCCCCCChhhhhhhcCCC-
Q 001215 995 NLHGDKLRLQQVLSDFLTNALIFTPAFEGS---SIAFRVIPQK-ERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHS- 1069 (1122)
Q Consensus 995 ~v~~D~~~L~QVL~NLL~NAik~t~~~~g~---~I~I~v~~~~-~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f- 1069 (1122)
.+.+|+..|.|+|.||+.||++|+.. ++ .|.|++...+ + .+.|+|.|||+|||++.+.++|++|
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~--~g~~~~I~V~i~~~~~~---------~~~I~V~DnG~GIp~e~l~~iF~~~~ 98 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEE--AGILPDILVQVERTGPD---------YVTVIIEDNGPGIVREQIPKVFAKLL 98 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTT--TSCSCEEEECCEEETTT---------EEEEEEECCSCCCCGGGHHHHHSCCC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhh--cCCCcEEEEEEEECCCc---------EEEEEEEECCCCCCHHHHHHHhhhhc
Confidence 36689999999999999999999973 44 7888877655 4 7899999999999999999999764
Q ss_pred -----C----CCCCccchHHHHHHHHHHcCcE-EEEEecCCc--eEEEEEEEecCCC
Q 001215 1070 -----Q----GASREGLGLYISQKLVKLMNGT-VQYIREAER--SSFLILIEFPLAH 1114 (1122)
Q Consensus 1070 -----~----~~~GtGLGL~I~r~ive~~gG~-I~v~s~~gg--~tF~~~l~LP~~~ 1114 (1122)
. ..+|.|+||++|+.+++.|||+ |.+++..++ ..|+|+++||...
T Consensus 99 atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 99 YGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTST 155 (621)
T ss_dssp CC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSS
T ss_pred cCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhc
Confidence 1 2357899999999999999999 889888765 4678888888763
No 89
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.32 E-value=5.4e-12 Score=118.45 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=105.7
Q ss_pred HhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHH
Q 001215 739 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 818 (1122)
Q Consensus 739 se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~ 818 (1122)
++++|+.++++++. ++|.+|.+|+++++|+++.+++||+++++.++... +..+.+|++...+...+..
T Consensus 2 s~~~~~~l~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~---------~~~~i~p~d~~~~~~~~~~ 69 (118)
T 3icy_A 2 NAEELQALVDNIPA---AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLN---------TLSMIHHDDRHMLSNAYSK 69 (118)
T ss_dssp HHHHHHHHHTTCCC---CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEG---------GGGGBCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCc---eEEEEEcCCCceEEechhHhhcCCCHHHccCChhH---------HHHHcCHHHHHHHHHHHHH
Confidence 46789999999998 89999999999999999999999999998776421 2356789999999999999
Q ss_pred HhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 819 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 819 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
.+.++.....++++.+++|+++|+.....|+.+.+|.+.+++++++|||
T Consensus 70 ~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 70 LREAKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp HHHSCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHhcCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 9888888899999999999999999999999999999999999999998
No 90
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.31 E-value=1e-11 Score=116.48 Aligned_cols=124 Identities=9% Similarity=0.034 Sum_probs=100.1
Q ss_pred HHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCC-CCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchH
Q 001215 731 LVMDKYTRIQGDYVGIVSSPSALIPPIFMTDED-GRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTL 809 (1122)
Q Consensus 731 ~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~d-g~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~ 809 (1122)
++++++++++++|+.++++++. ++|.+|.+ |+++++|+++.+++|+++++++|+... +....++++.
T Consensus 1 ~~e~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~ 68 (125)
T 3eeh_A 1 RAKQQAAKSERRVRELTEATND---ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHD---------FLNGIHPEDR 68 (125)
T ss_dssp ---------CHHHHHHHSCCCC---EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGG---------GGGGBCHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCc---eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHH---------HHHhcCHHHH
Confidence 3577888999999999999999 89999999 999999999999999999999987621 2345567787
Q ss_pred HHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 810 TKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 810 ~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
..+...+.... .+.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 69 ~~~~~~~~~~~-~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 69 ELMKDTMQSLM-DGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHHHH-cCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 77777777744 4455688899999999999999999999999999999999999998
No 91
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.31 E-value=1.1e-11 Score=116.41 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=84.8
Q ss_pred CeEEec---CCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEEE
Q 001215 756 PIFMTD---EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGF 832 (1122)
Q Consensus 756 ~I~~~D---~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~ 832 (1122)
+|+++| .+|+|+++|++|++++||+++|++|+... .+.+++........+...+..+..+..++..
T Consensus 5 ~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 73 (109)
T 1n9l_A 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-----------FLQGEGTDPKEVQKIRDAIKKGEACSVRLLN 73 (109)
T ss_dssp EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-----------hcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE
Confidence 799999 47999999999999999999999999731 1222333333444556666667778889999
Q ss_pred EccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccH
Q 001215 833 FDQQGKYVEALLSANKRTNAEGKISGILCFLHVASP 868 (1122)
Q Consensus 833 ~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITe 868 (1122)
+++||+.+|+.++..|+.|.+|++.+++++.+|||+
T Consensus 74 ~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 74 YRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999999994
No 92
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.31 E-value=1.4e-11 Score=115.06 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=102.7
Q ss_pred hHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHH
Q 001215 738 RIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMN 817 (1122)
Q Consensus 738 ~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~ 817 (1122)
++++.++.++++.+. +++++|.+|+++++|+++.+++|+++++++|+.+. .+.+++....+...+.
T Consensus 4 ~~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~ 69 (124)
T 3lyx_A 4 DILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-----------MLHVPGDTEHITSEVI 69 (124)
T ss_dssp CHHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-----------GGSCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-----------HhcCcchhhHHHHHHH
Confidence 456678899999998 89999999999999999999999999999998753 2233455555666677
Q ss_pred HHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHH
Q 001215 818 KVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQ 871 (1122)
Q Consensus 818 ~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq 871 (1122)
..+.++.....++.+..++|+.+|+.++..|+.+.+|.+.|++++++|||++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 70 SAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp HHHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred HHHHcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 777777888889999999999999999999999999999999999999998764
No 93
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.31 E-value=2.3e-11 Score=117.27 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=100.6
Q ss_pred hhhhhhcCCCCCCCCeEEecC---CCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHH
Q 001215 742 DYVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 818 (1122)
Q Consensus 742 ~l~~l~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~ 818 (1122)
+++.++++.+. +++++|. +|+++++|+++.+++|++.++++|+.+. .+.+++....+...+..
T Consensus 3 ~l~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~ 68 (146)
T 2v0u_A 3 FLATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCR-----------FLQGPETDRATVRKIRD 68 (146)
T ss_dssp SCCCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTSCHHHHHHHHH
T ss_pred hHHHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHH-----------HhcCCcCChHHHHHHHH
Confidence 56788888888 8999999 9999999999999999999999998752 23334555556666777
Q ss_pred HhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHH
Q 001215 819 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQY 872 (1122)
Q Consensus 819 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~ 872 (1122)
.+..+.....++.+..++|..+|+.++..|+.+.+|.+.|++++++|||++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 69 AIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp HHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred HHhcCCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHH
Confidence 777777788899999999999999999999999999999999999999998873
No 94
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.30 E-value=1.5e-11 Score=116.87 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=74.5
Q ss_pred CeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCc----ceeEEE
Q 001215 756 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA----DKILFG 831 (1122)
Q Consensus 756 ~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~----~~~e~~ 831 (1122)
+|+++|.+|+|++||+++++++||+++|++|+++. .+.+++........+......... ...++.
T Consensus 5 ~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (119)
T 2vv6_A 5 AMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVN-----------ILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVT 73 (119)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-----------GGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEE
T ss_pred eEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHH-----------HhCCchHHHHHHHHHHHHhcCCCcccCCCceEEE
Confidence 89999999999999999999999999999999752 222233333333334443332222 356778
Q ss_pred EEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHH
Q 001215 832 FFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQR 878 (1122)
Q Consensus 832 ~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~ 878 (1122)
..++||+.+|+.++..|+.+.+ ..+++++++|||++|++++++++
T Consensus 74 ~~~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 74 GKRRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp EECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC-----------
T ss_pred EEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHh
Confidence 8999999999999999997643 34689999999999999988754
No 95
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.30 E-value=1.5e-11 Score=131.77 Aligned_cols=129 Identities=13% Similarity=0.131 Sum_probs=108.1
Q ss_pred eeeeccchhhhHHHHHHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHH
Q 001215 589 MIVNVPSVDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVV 668 (1122)
Q Consensus 589 ~~~~~r~~~~~~~~~~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~ 668 (1122)
.+...+|++++++++++|+ +++.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++..+.++...+..
T Consensus 93 ~~~~~~DIT~~k~~e~~l~----~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~ 168 (227)
T 3ewk_A 93 YISIRRDITAQKEAEAQLA----RLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQET 168 (227)
T ss_dssp EEEEEEECTTTTHHHHHHH----HHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHH
T ss_pred EEEEEEehhhHHHHHHHHH----HHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHH
Confidence 3456789999999988885 466789999999999999999999999999999999999999999998888777766
Q ss_pred HHHHHHHHcCCcceeEEEEEEEeCCCCCCC------eEEEEEEEEEecCCCCCEEEEEEEEEc
Q 001215 669 KNMLSSAFLGIEERNVEIKLRAFGPRETSG------PVILVVNACCTQDTKENVIGVCFVGQD 725 (1122)
Q Consensus 669 ~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~------~~~v~v~~~pi~d~~G~v~gvv~v~~D 725 (1122)
...+..++..+.....++..+ +++|. .+|+.++..|++|.+|++.|++++.+|
T Consensus 169 ~~~~~~~~~~~~~~~~e~~~~----~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 169 LAAMQEALQAGQPWSGRLLNR----RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp HHHHHHHHHHTCCEECCEEEE----EECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred HHHHHHHHHcCCceeEEEEEE----CCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 666766666555444444443 44554 899999999999999999999999987
No 96
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=117.90 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=95.8
Q ss_pred HHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCC-cceeEEEEEEEeCC
Q 001215 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGI-EERNVEIKLRAFGP 693 (1122)
Q Consensus 615 ~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~-~~~~~e~~l~~~~~ 693 (1122)
.++++++++|+.+|.+|+++++|+++++++||++++++|+++.++++|++.+.+...+..++.++ .....++++.
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~---- 82 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFR---- 82 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEE----
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEE----
Confidence 46778999999999999999999999999999999999999999999999998888888877653 3334444443
Q ss_pred CCCCCeEEEEEEEEEecCCC-CCEEEEEEEEEcchhhH
Q 001215 694 RETSGPVILVVNACCTQDTK-ENVIGVCFVGQDITGQK 730 (1122)
Q Consensus 694 ~~dG~~~~v~v~~~pi~d~~-G~v~gvv~v~~DITerK 730 (1122)
++||..+|+.++..|++|.+ +.+.+++++.+|||+.+
T Consensus 83 ~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 83 AKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp CSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 78999999999999999886 56777999999999864
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.30 E-value=1e-11 Score=141.24 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=104.0
Q ss_pred HHHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEe
Q 001215 615 RLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAF 691 (1122)
Q Consensus 615 ~lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~ 691 (1122)
.++++++++|+++|. +|+|++||+++++++||++++++|+++.++.++++.......+..++..+.....++.+.
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-- 92 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINY-- 92 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEE--
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEE--
Confidence 467899999999999 999999999999999999999999999999988877776666777776666555454443
Q ss_pred CCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHH
Q 001215 692 GPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYT 737 (1122)
Q Consensus 692 ~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~ 737 (1122)
++||..+|+.++..|++|.+|++.|++++++|||++|+.++++.
T Consensus 93 --~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~ 136 (332)
T 2wkq_A 93 --TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAERE 136 (332)
T ss_dssp --CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHH
T ss_pred --cCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhcc
Confidence 78999999999999999999999999999999999998887764
No 98
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.28 E-value=2.2e-11 Score=113.15 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=92.0
Q ss_pred hcCCCCCCCCeEEecC---CCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCC
Q 001215 747 VSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ 823 (1122)
Q Consensus 747 ~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 823 (1122)
+++++. +|+++|. +|+++++|+++++++|+++++++|+.+. .+.+++........+...+..+
T Consensus 3 l~~~~~---~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
T 4eet_B 3 PEFIEK---NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-----------FLQGPETDQATVQKIRDAIRDQ 68 (115)
T ss_dssp --CCCC---SEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTSCHHHHHHHHHHHHTT
T ss_pred cccCCC---cEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-----------HhcCCCCChHHHHHHHHHHHcC
Confidence 456666 8999999 9999999999999999999999998742 2233444555666677777777
Q ss_pred CcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHH
Q 001215 824 DADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 869 (1122)
Q Consensus 824 ~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITer 869 (1122)
.....++.+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 69 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 69 RETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDH 114 (115)
T ss_dssp CCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCC
T ss_pred CCcceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeeccc
Confidence 8888899999999999999999999999999999999999999975
No 99
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.28 E-value=4.6e-12 Score=120.52 Aligned_cols=117 Identities=10% Similarity=0.071 Sum_probs=89.6
Q ss_pred hhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHh
Q 001215 741 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVI 820 (1122)
Q Consensus 741 ~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l 820 (1122)
..|+.++++++. +|+ +|.+|+++++|+++++++||++++++|+.+. .+++ ..+....+...+...+
T Consensus 3 ~~~~~~~~~~~~---~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~---------~~~~~~~~~~~~~~~~ 68 (120)
T 3mqq_A 3 IDYKTAFHLAPI---GLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYP---------SSDEFERIGERISPVM 68 (120)
T ss_dssp CCHHHHHHHCSS---EEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSS---------SHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCc---eEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccC---------ChhhHHHHHHHHHHHH
Confidence 458889999998 775 5789999999999999999999999998752 2222 1223244555555566
Q ss_pred cCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHH
Q 001215 821 SGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQY 872 (1122)
Q Consensus 821 ~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~ 872 (1122)
.++.....++.+.++||+.+|+.++..++ +.+|...+++++++|||++|+.
T Consensus 69 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 69 IAHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp HHHSCEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred hcCCcceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 66667788999999999999999999998 5666667899999999998865
No 100
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.26 E-value=2.4e-11 Score=114.23 Aligned_cols=124 Identities=11% Similarity=0.083 Sum_probs=98.2
Q ss_pred hHhhhhhhhhcCCCCCCCCeEEec---CCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHH
Q 001215 738 RIQGDYVGIVSSPSALIPPIFMTD---EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 814 (1122)
Q Consensus 738 ~se~~l~~l~e~~~~li~~I~~~D---~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~ 814 (1122)
+++..++.++++.+. +++++| .+|+++++|+++.+++|++.++++|+.+. .+.+++.......
T Consensus 3 ~~~~~~~~~~~~~~~---~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-----------~~~~~~~~~~~~~ 68 (130)
T 2z6d_A 3 RVSQELKTALSTLQQ---TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCR-----------FLQGPDTDKNEVA 68 (130)
T ss_dssp ----CHHHHHHHTTC---EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTSCHHHHH
T ss_pred hHHHHHHHHHHhccc---ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChh-----------hccCCCCCchHHH
Confidence 456778899999988 899999 99999999999999999999999998752 2223344444555
Q ss_pred HHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHH
Q 001215 815 VMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 875 (1122)
Q Consensus 815 ~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~ 875 (1122)
.+...+..+.....++...+++|+.+|+.+...|+.+.+|.+.|++++++|||++++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 69 KIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred HHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 5666667777777888889999999999999999999999999999999999998877643
No 101
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.26 E-value=1.2e-11 Score=123.74 Aligned_cols=146 Identities=20% Similarity=0.184 Sum_probs=83.8
Q ss_pred EEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccc
Q 001215 718 GVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVK 797 (1122)
Q Consensus 718 gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~ 797 (1122)
...-+.+|+++.++..+++.+.+..++.++++.+. +++++|.+|+++++|+++.+++|++.++++|+.+. .+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~---- 88 (167)
T 1v9y_A 17 RGSHMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID-ML---- 88 (167)
T ss_dssp -----------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG-GG----
T ss_pred hhHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChh-hc----
Confidence 34445678999999999999999999999999998 89999999999999999999999999999998753 22
Q ss_pred cccccccCcchHHHHHHHHHHHhcCCCc----ceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHH
Q 001215 798 NFGCRVKNHDTLTKLRIVMNKVISGQDA----DKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYA 873 (1122)
Q Consensus 798 ~~~~~l~~~d~~~~~~~~l~~~l~g~~~----~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e 873 (1122)
.+++....+...+.....+... ...++.+..++|..+|+.++..|+ +.+|... ++++++|||++++.+
T Consensus 89 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e 160 (167)
T 1v9y_A 89 ------IPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQK 160 (167)
T ss_dssp ------SCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC--------
T ss_pred ------cCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHH
Confidence 2233333344455555555443 466788899999999999999998 5566664 999999999999988
Q ss_pred HHHHHH
Q 001215 874 LQVQRI 879 (1122)
Q Consensus 874 ~~L~~~ 879 (1122)
++++++
T Consensus 161 ~~l~~l 166 (167)
T 1v9y_A 161 EQTRQL 166 (167)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 776653
No 102
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.26 E-value=2.2e-11 Score=115.85 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=85.6
Q ss_pred HHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHH
Q 001215 734 DKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLR 813 (1122)
Q Consensus 734 ~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~ 813 (1122)
++|++++++|+.+++++++ +|+++|.+|+++++|+++++++||+++|++|+... .+. ++.......
T Consensus 4 ~~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~----------~~~~~~~~~ 69 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLS----------RGVDSGWAA 69 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTT----------TCSTTSHHH
T ss_pred hHHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhC----------CccchhHHH
Confidence 3577888999999999999 89999999999999999999999999999998642 111 111111111
Q ss_pred HHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 814 IVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 814 ~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
..+. .+..+.....++++.++||+.+|+.++..|+. +|. ++++++|||
T Consensus 70 ~~~~-~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 70 ASLA-RIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp HHHH-HHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred HHHH-HHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 2223 33344456788899999999999999999885 565 568899998
No 103
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.26 E-value=1.7e-11 Score=113.88 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=94.0
Q ss_pred hhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHH
Q 001215 740 QGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKV 819 (1122)
Q Consensus 740 e~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~ 819 (1122)
+++++.++++++. +|+++|.+|+++++|+++++++|+++++++|+.+.. ++ +++...+...+..+
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~-----------~~~~~~~~~~~~~~ 66 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYD-IF-----------PEIGEEWKSVHRRG 66 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHH-HC-----------TTCCHHHHHHHHHH
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHH-HC-----------CccHHHHHHHHHHH
Confidence 5678899999998 899999999999999999999999999999987532 22 33344566667777
Q ss_pred hcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 820 ISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 820 l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
+.++.....+..+.+++|+.+|+.++..|+.+.+|.+.|++++++|||
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 67 LAGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp HTTCCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred hcCCcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 777666555558889999999999999999999999999999999998
No 104
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.22 E-value=4.2e-11 Score=112.24 Aligned_cols=111 Identities=9% Similarity=0.035 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEE
Q 001215 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVE 685 (1122)
Q Consensus 606 L~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e 685 (1122)
+++..+.++.++++++++|+++|.+|+|+++|+++++++||++++++|+++.+++++..... +.....++ ....+
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~-~~~~e 82 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKN-NYTFK 82 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHS-EEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcC-cEEEE
Confidence 34445567889999999999999999999999999999999999999999998886544433 22222222 22233
Q ss_pred EEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 686 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 686 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
..+ .+++|..+|+.++..++.+.+ ..+++++++|||
T Consensus 83 ~~~----~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRY----RSQSGRIFLVEMSLTFLEDQE--RRFSCVFVREKS 118 (118)
T ss_dssp EEE----ECTTCCEEEEEEEEEEEEETT--EEEEEEEEEEC-
T ss_pred EEE----EccCCCEEEEEEEEEEEEECC--ccEEEEEEEeCC
Confidence 333 378999999999999987644 346789999998
No 105
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.20 E-value=1.6e-11 Score=123.18 Aligned_cols=123 Identities=10% Similarity=0.064 Sum_probs=93.7
Q ss_pred HHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHH
Q 001215 735 KYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 814 (1122)
Q Consensus 735 ~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~ 814 (1122)
++++++..++.++++++. ||+++|.+|+|++||+++++++|+++++++|+.+. ++++ . ....+..
T Consensus 16 ~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p----------~-~~~~~~~ 80 (152)
T 3mxq_A 16 AMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFP----------E-SADYLKR 80 (152)
T ss_dssp HHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSG----------G-GHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcC----------C-hHHHHHH
Confidence 466777788999999998 99999999999999999999999999999999863 3332 2 4455677
Q ss_pred HHHHHhcCCCccee---------EEEE---EccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHH
Q 001215 815 VMNKVISGQDADKI---------LFGF---FDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQY 872 (1122)
Q Consensus 815 ~l~~~l~g~~~~~~---------e~~~---~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~ 872 (1122)
.+..++..+.+... ++.. ...+|+.++..++..|+.|.+|++.|++.+++|||++..+
T Consensus 81 ~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 81 KIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp HHHHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred HHHHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 78888876554221 1211 2346778899999999999999999999999999987754
No 106
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.20 E-value=7.8e-11 Score=133.83 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=102.7
Q ss_pred hhhhcCCCCCCCCeEEecC---CCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHh
Q 001215 744 VGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVI 820 (1122)
Q Consensus 744 ~~l~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l 820 (1122)
..+++++++ +|+++|. +|++++||+++++++||++++++|+... .+.+++........+...+
T Consensus 14 ~~~~~~~~~---~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~-----------~l~~~~~~~~~~~~~~~~~ 79 (332)
T 2wkq_A 14 ATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR-----------FLQGPETDRATVRKIRDAI 79 (332)
T ss_dssp CCCGGGCCS---EEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTCCHHHHHHHHHHH
T ss_pred HhHhhcCCC---cEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch-----------hhcCCCCCHHHHHHHHHHH
Confidence 456777777 8999999 9999999999999999999999999752 2334455555666677777
Q ss_pred cCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHH
Q 001215 821 SGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQ 877 (1122)
Q Consensus 821 ~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~ 877 (1122)
..+.....++++.++||+.+|+.++..|+.|.+|.+.|++++++|||++++.+++.+
T Consensus 80 ~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~ 136 (332)
T 2wkq_A 80 DNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAERE 136 (332)
T ss_dssp HTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHH
T ss_pred HcCCeeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhcc
Confidence 788888899999999999999999999999999999999999999999888776653
No 107
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.20 E-value=8.3e-11 Score=111.46 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=88.5
Q ss_pred hhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcC
Q 001215 743 YVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG 822 (1122)
Q Consensus 743 l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g 822 (1122)
|+.+++++++ +|+++|.+|+++++|+++++++|+++++++|+.+. .+.++++...+...+.....+
T Consensus 1 ~~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 66 (126)
T 3mjq_A 1 MKNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHIL-----------TITSAGKMAEGEKILAELFAG 66 (126)
T ss_dssp -CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHH-----------HHHCTTCHHHHHHHHHHHHHT
T ss_pred ChhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHH-----------HHcCchhHHHHHHHHHHHHhC
Confidence 4567888888 89999999999999999999999999999998753 233355566667777777777
Q ss_pred CCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHH
Q 001215 823 QDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRIS 880 (1122)
Q Consensus 823 ~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~a 880 (1122)
+.. ..++.+.+++|..+|+.++..+..+ +...+++++++|||++++++++.+...
T Consensus 67 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 67 KKE-SLPLSLEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp CCS-EEEEEEECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred CCc-eeEEEEEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 666 7788899999999999999887664 335679999999999999887765443
No 108
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.19 E-value=1.1e-10 Score=126.11 Aligned_cols=150 Identities=10% Similarity=0.114 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHc------------CCCchhhcCCcccccccCCchHHHHHHHHHHHc
Q 001215 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELT------------GLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (1122)
Q Consensus 610 e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~------------G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~ 677 (1122)
.++++.+++++++||+++|.+|+|+|+|+++++++ ||++++++|+++.++++.. ......+. .+.
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~--~~~~~~~~-~~~ 97 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHLLA-NLT 97 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSH--HHHHHHHH-TCC
T ss_pred HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCH--HHHHHHHH-hcc
Confidence 35678899999999999999999999999999998 8999999999998877532 22222222 222
Q ss_pred CCcceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCe
Q 001215 678 GIEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPI 757 (1122)
Q Consensus 678 g~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I 757 (1122)
+ .++.++.. +| .|+.++..|++|.+|++.|++++++|||+++++|+++........ . +
T Consensus 98 ~----~~~~~~~~-----~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~-------~---g- 155 (233)
T 3vol_A 98 G----VHKAELNL-----GG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA-------A---G- 155 (233)
T ss_dssp S----CEEEEEEE-----TT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH-------C---C-
T ss_pred c----ceeEEEEE-----CC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh-------C---C-
Confidence 2 12333321 23 478999999999999999999999999999999988766543322 1 1
Q ss_pred EEecCCCCee-eeehhHHHhcCCChHHHhhh
Q 001215 758 FMTDEDGRCL-EWNDGMEKLSGLKREEAIER 787 (1122)
Q Consensus 758 ~~~D~dg~ii-~~N~a~~~l~G~~~eeliGk 787 (1122)
|..+++. ..|..+.+.+++.-.+++++
T Consensus 156 ---dl~~ri~~~~~~~~~~~l~~~ln~l~~~ 183 (233)
T 3vol_A 156 ---DFSKRVEEAGKEGFFLRLAKDLNSLVDT 183 (233)
T ss_dssp -------------------------------
T ss_pred ---cccccccccccchHHHHHHHHHHHHHHH
Confidence 4456665 56777777777777666654
No 109
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.15 E-value=2.6e-11 Score=115.20 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEE
Q 001215 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKL 688 (1122)
Q Consensus 609 ~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l 688 (1122)
.+++|+.++++++++|+++|.+|+|+++|+++++++|++.++++|+++.++++++...............+... .
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 91 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT----R- 91 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----E-
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----E-
Confidence 77889999999999999999999999999999999999999999999999985444444444445555554432 1
Q ss_pred EEeCCCCCCC-eEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 689 RAFGPRETSG-PVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 689 ~~~~~~~dG~-~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
..+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 92 -----~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 92 -----SEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp -----EEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred -----eEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 12344 78999999998765 56679999999998
No 110
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-10 Score=108.51 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=94.7
Q ss_pred hhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcC
Q 001215 743 YVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG 822 (1122)
Q Consensus 743 l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g 822 (1122)
...++++.++ +|+.+|.+|+++++|+++++++||++++++|+.+ ..+.+|++...+...+...+.+
T Consensus 5 ~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~-----------~~~~~p~d~~~~~~~~~~~~~~ 70 (121)
T 2kdk_A 5 SGEINVKPTE---FITRFAVNGKFVYVDQRATAILGYLPQELLGTSC-----------YEYFHQDDHNNLTDKHKAVLQS 70 (121)
T ss_dssp TTCCCCCSSE---EEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBT-----------TTTBCSSSHHHHHHHHHHHHTS
T ss_pred ccccccCCcc---EEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcH-----------HHeeCHHHHHHHHHHHHHHHhC
Confidence 3567777777 7999999999999999999999999999999864 2455678888777777777765
Q ss_pred -CCcceeEEEEEccCCCEEEEEEEEeeeeCCC-CCEEEEEEeeecccHH
Q 001215 823 -QDADKILFGFFDQQGKYVEALLSANKRTNAE-GKISGILCFLHVASPE 869 (1122)
Q Consensus 823 -~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~-G~i~gvv~~l~DITer 869 (1122)
......+++++++||+++|+..+..|+.|.+ +.+.+++++.+|||+.
T Consensus 71 ~~~~~~~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 71 KEKILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp SSCEEEEEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred CCCCccEEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 4446789999999999999999999999886 5677788999999864
No 111
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.14 E-value=1.9e-10 Score=115.21 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCccEEEecCCCcEEeccHH---HHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEE
Q 001215 611 NEMVRLIETAAVPILAVDASGNVNGWNSK---AAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIK 687 (1122)
Q Consensus 611 ~~l~~lie~a~~gI~~~D~dG~Iv~~N~~---~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~ 687 (1122)
+++..++++++++|+++|.+|+|+|||++ +++++| ..++++|+++.++.++...+.+...+.. ++.+.....++.
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~~~~~v~~i~~~-l~~g~~~~~~~~ 96 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPKVLDKVKKVFEL-LRNGQRDKVNMW 96 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHHHHHHHHHHHHH-HHTTSBSEEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHHHHHHHHHHHHH-HHcCCccEEEEE
Confidence 35778999999999999999999999999 999999 5678999999987765544444444444 443444333443
Q ss_pred EEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHh
Q 001215 688 LRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQ 740 (1122)
Q Consensus 688 l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se 740 (1122)
... .+...++.++..|++|.+|++.|++.+++|||+.++.+.+.++-+
T Consensus 97 ~~~-----~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 97 FQS-----ERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EEE-----TTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred Eec-----CCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 321 122467899999999999999999999999999998888766544
No 112
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.13 E-value=4.6e-10 Score=107.07 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=92.6
Q ss_pred HHHHHHhcCccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCc--ccccccCCchHHHHHHHHHHHcCCcceeEEEE
Q 001215 613 MVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSAFLGIEERNVEIK 687 (1122)
Q Consensus 613 l~~lie~a~~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~--~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~ 687 (1122)
+...+++++++++++|. +|+|+++|+++++++|++.++++|++ +..+.+++........+...+..+.....++.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45667889999999999 99999999999999999999999999 44555666655555666666665554444443
Q ss_pred EEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhh
Q 001215 688 LRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 729 (1122)
Q Consensus 688 l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 729 (1122)
.. +++|..+|+.++..|+++.+|.+.|++++++|||++
T Consensus 101 ~~----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 FY----RKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred EE----CCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 33 678999999999999999999999999999999974
No 113
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.12 E-value=2.7e-11 Score=125.31 Aligned_cols=123 Identities=13% Similarity=0.103 Sum_probs=91.6
Q ss_pred HhHhhhhhhhhcCCCCCCCCeEEec-CCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHH
Q 001215 737 TRIQGDYVGIVSSPSALIPPIFMTD-EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 815 (1122)
Q Consensus 737 ~~se~~l~~l~e~~~~li~~I~~~D-~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~ 815 (1122)
.+++++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++. ++++. .....+...
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~-~~~~~----------~~~~~~~~~ 96 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPE----------LEGQQIYEM 96 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHH-HHCTT----------SCSSSSHHH
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHH-HHCCc----------hhhhhHHHH
Confidence 4667789999999999 899999 9999999999999999999 89998753 33321 222223345
Q ss_pred HHHHhcCCCcce-eEEEE--EccC--CCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHH
Q 001215 816 MNKVISGQDADK-ILFGF--FDQQ--GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 875 (1122)
Q Consensus 816 l~~~l~g~~~~~-~e~~~--~~~d--G~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~ 875 (1122)
+..++..+.... .++.+ .+++ |..+|+.++..|+.+.+|.+.|++++++|||++++++++
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 97 LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 566664444433 22333 2222 788999999999999999999999999999999999877
No 114
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.10 E-value=4.3e-10 Score=121.30 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=90.4
Q ss_pred hhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhc------------CCChHHHhhhhccccccccccccccccCcc
Q 001215 740 QGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLS------------GLKREEAIERMLIGEVFTVKNFGCRVKNHD 807 (1122)
Q Consensus 740 e~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~------------G~~~eeliGk~l~~~i~~~~~~~~~l~~~d 807 (1122)
..+++.++++++. +|+++|.+|+|+++|+++++++ ||++++++|+++. .+++ .+.
T Consensus 21 ~~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~---------~~~ 87 (233)
T 3vol_A 21 MARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHK---------NPA 87 (233)
T ss_dssp HHHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSS---------SHH
T ss_pred HHHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcC---------CHH
Confidence 4557788999888 8999999999999999999998 8999999998752 2221 111
Q ss_pred hHHHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHHHHHHH
Q 001215 808 TLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAAA 885 (1122)
Q Consensus 808 ~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~ae~~~~ 885 (1122)
. . ..+...+.+ .+..++. .+|+ |+.++.+|+.|.+|++.|++++++|||++++.++++++..+....
T Consensus 88 ~---~-~~~~~~~~~--~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~~ 154 (233)
T 3vol_A 88 H---Q-RHLLANLTG--VHKAELN---LGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAAA 154 (233)
T ss_dssp H---H-HHHHHTCCS--CEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred H---H-HHHHHhccc--ceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHhC
Confidence 1 1 111222222 2333332 3554 668899999999999999999999999999999998887776553
No 115
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.07 E-value=1.7e-09 Score=111.71 Aligned_cols=152 Identities=8% Similarity=0.124 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHH
Q 001215 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (1122)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r 276 (1122)
..+++..+...|.+ +.|++++++.+++.+++++|+||+.||.|+++.-..+.++...++. .+..+| + ..-..
T Consensus 28 ~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~--~-~~~~~ 99 (184)
T 3p01_A 28 QMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQTLSTIQGFYSQQGT---VNNWLN--Q-DPLTN 99 (184)
T ss_dssp HHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEESSSS---CCCCGG--G-CHHHH
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCceeeeeeeccccCc---cCcccC--C-CcHHH
Confidence 34556667777887 6699999999999999999999999999944322222222333332 222233 2 23455
Q ss_pred HHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCc
Q 001215 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (1122)
Q Consensus 277 ~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~ 356 (1122)
..+..++.-+|.|+...| .. ++..+++..|++|.|++||+.+ |+
T Consensus 100 ~~~~~~~~~~i~d~~~~~-~~----------------------~~~~~~~~~~~~s~l~vPL~~~-------------~~ 143 (184)
T 3p01_A 100 EAIATGQIQVAANIAKDP-KL----------------------ASISQYQDNGIQSHVVIPITYR-------------NE 143 (184)
T ss_dssp HHHHHCSCEEESCGGGCH-HH----------------------HTCHHHHHHTCCEEEEEEEEET-------------TE
T ss_pred HHHhhCCeEEEeccccCc-cc----------------------cchhHHHHhCccEEEEEEEEEC-------------CE
Confidence 677888888888854443 11 2246788899999999999988 99
Q ss_pred eeeEEEeecCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 357 lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+||+|.+|+..|+.|+.+....++.++..+++.|..
T Consensus 144 ~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~aiAi~n 179 (184)
T 3p01_A 144 MLGVLSLQWQQPISLREDELTLIHLSAQLVAIALTS 179 (184)
T ss_dssp EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999977789999999999999999988887743
No 116
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.07 E-value=1.3e-09 Score=98.95 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=82.8
Q ss_pred ccEEEecC---CCcEEeccHHHHHHcCCCchhhcCCc--ccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCC
Q 001215 622 VPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRET 696 (1122)
Q Consensus 622 ~gI~~~D~---dG~Iv~~N~~~~~l~G~s~eeliG~~--~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~d 696 (1122)
.+|+++|. +|+|+++|+++++++|++.++++|++ ...+.++.........+...+.++.....++... +++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFY----RKD 77 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEE----CTT
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEE----cCC
Confidence 57889997 59999999999999999999999998 3344455555555555566665555444444433 678
Q ss_pred CCeEEEEEEEEEecCCCCCEEEEEEEEEcchhh
Q 001215 697 SGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 729 (1122)
Q Consensus 697 G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 729 (1122)
|..+|+.++..|+++.+|.+.+++++++|||++
T Consensus 78 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 78 GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp SCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 999999999999999999999999999999974
No 117
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.06 E-value=3.5e-10 Score=110.19 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcc-----eeEE
Q 001215 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEE-----RNVE 685 (1122)
Q Consensus 611 ~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~-----~~~e 685 (1122)
+.++.+++++++||+++|.+|+|+++|++++++|||+.++++|+++.+++++++.+.+...+......+.. ....
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCc
Confidence 46788999999999999999999999999999999999999999999999988765444333332222211 1112
Q ss_pred EEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchh
Q 001215 686 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITG 728 (1122)
Q Consensus 686 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITe 728 (1122)
.++. ..++||..+|+.++..|+.+ ++. -++++++|...
T Consensus 87 ~E~~--~~rkdG~~~~velsis~i~~--~~~-~~v~~~~~~~~ 124 (129)
T 3mfx_A 87 QETT--LICASGKAKDVELSISYIPG--HEP-MFVMVMHDLEH 124 (129)
T ss_dssp EEEE--EECTTSCEEEEEEEEEEECS--SSC-EEEEEEEEC--
T ss_pred eEEE--EEcCCCCEEEEEEEEEEecC--CCc-EEEEEEechhh
Confidence 2232 23789999999999999983 333 36677788643
No 118
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.05 E-value=6.4e-11 Score=112.75 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCccee
Q 001215 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERN 683 (1122)
Q Consensus 604 ~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~ 683 (1122)
..+....+....+++++|+||+++|.+|+|+++|+++++++|++.++++|+++.+++++.....+...+..++..+....
T Consensus 5 ~~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 3fg8_A 5 HHHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQ 84 (118)
T ss_dssp --------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEE
T ss_pred cccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceE
Confidence 34556667778899999999999999999999999999999999999999999999987776677777777776655433
Q ss_pred EEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhh
Q 001215 684 VEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 729 (1122)
Q Consensus 684 ~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 729 (1122)
.+++. . ..+| .|+.++..|+.+ |++++++|||++
T Consensus 85 ~~~~~--~--~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 85 TRVDS--L--YSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEEC--S--SSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEE--E--cCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 32122 2 1244 678888888765 588999999985
No 119
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.03 E-value=1.3e-09 Score=104.19 Aligned_cols=105 Identities=10% Similarity=0.163 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcC------------CCchhhcCCcccccccCCchHHHHHHHHHHHcC
Q 001215 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTG------------LTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLG 678 (1122)
Q Consensus 611 ~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G------------~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g 678 (1122)
.+++.+++++++||+++|.+|+|+++|+++++++| ++.++++|+++.++++.. ......+.. ..
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~~~~~~~-~~- 80 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHLLAN-LT- 80 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHHHHHHHH-CS-
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHHHHHHhC-cC-
Confidence 57889999999999999999999999999999996 899999999999877532 222222222 21
Q ss_pred CcceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhh
Q 001215 679 IEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 729 (1122)
Q Consensus 679 ~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 729 (1122)
.. .+..+.. +| .++.++..|++|.+|++.|++++++|||++
T Consensus 81 -~~--~~~~~~~-----~~--~~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 81 -GV--HKAELNL-----GG--RRFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp -SC--EEEEEEE-----TT--EEEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred -CC--cEEEEEE-----CC--EEEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 11 2222321 23 366889999999999999999999999985
No 120
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.03 E-value=4.3e-10 Score=129.54 Aligned_cols=110 Identities=7% Similarity=-0.057 Sum_probs=98.3
Q ss_pred cCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCCCe
Q 001215 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETSGP 699 (1122)
Q Consensus 620 a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~~ 699 (1122)
....++..|.+|+++|+|+++.+++||+++|++|+++.+++||++.+.+...+..++.++.....+++++ +++|.+
T Consensus 250 ~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~----~kdG~~ 325 (361)
T 4f3l_A 250 NEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFL----TKGQQW 325 (361)
T ss_dssp CCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEE----CTTSEE
T ss_pred cceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEE----ecCCCE
Confidence 3456788999999999999999999999999999999999999999999988988887766555555554 789999
Q ss_pred EEEEEEEEEecCC-CCCEEEEEEEEEcchhhHHHH
Q 001215 700 VILVVNACCTQDT-KENVIGVCFVGQDITGQKLVM 733 (1122)
Q Consensus 700 ~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~aE 733 (1122)
+|+..++.+++|. +|++.+++++.+|||+++..+
T Consensus 326 vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 326 IWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 9999999999998 899999999999999998765
No 121
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.03 E-value=5.2e-10 Score=104.66 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=83.1
Q ss_pred HHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHH
Q 001215 735 KYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 814 (1122)
Q Consensus 735 ~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~ 814 (1122)
++++..+.++.+++++++ +|+++|.+|+++++|+++++++||++++++|+.+. ++++.. .+..
T Consensus 7 ~~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~-~~~~~~-------~~~~------ 69 (118)
T 3olo_A 7 QSELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQ-DIDVDF-------ALHD------ 69 (118)
T ss_dssp CHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGG-GTBTTG-------GGSC------
T ss_pred HHHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChh-hccccc-------CHHH------
Confidence 344445567789999998 89999999999999999999999999999998753 232210 0111
Q ss_pred HHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 815 VMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 815 ~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
+... ..+....+++.+.+++|+.+|+.++..++.+.++ .+++++++|||
T Consensus 70 -~~~~-~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 70 -WEEI-RQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp -HHHH-HHHSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred -HHHH-HhcCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 1111 2233567888899999999999999999876543 35779999997
No 122
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.01 E-value=1e-09 Score=103.77 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCC
Q 001215 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPR 694 (1122)
Q Consensus 615 ~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~ 694 (1122)
.++++++++|+++|.+|+|+|+|+++++++||+++|++|+++.+++||++.+.+...+. ........++++. +
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~----~ 75 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFI----K 75 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEE----C
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEE----c
Confidence 57899999999999999999999999999999999999999999999999988766553 2222233444433 8
Q ss_pred CCCCeEEEEEEEEEecCCCCCE
Q 001215 695 ETSGPVILVVNACCTQDTKENV 716 (1122)
Q Consensus 695 ~dG~~~~v~v~~~pi~d~~G~v 716 (1122)
+||..+|+.++..++++.++..
T Consensus 76 kdG~~~wve~~~~~v~~~~~~~ 97 (111)
T 2vlg_A 76 KDHTIVWVEAAVEIVTTRAERT 97 (111)
T ss_dssp TTSCEEEEEEEEEEC-------
T ss_pred CCCCEEEEEEEEEEEecccCCc
Confidence 8999999999999999876543
No 123
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.99 E-value=8.3e-11 Score=145.31 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=101.3
Q ss_pred HHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHH
Q 001215 736 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 815 (1122)
Q Consensus 736 L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~ 815 (1122)
+++...++..++++.++ +|+++|.+|++++||+++++++||+.++++|+..+ ...++++...+...
T Consensus 513 a~e~~~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l-----------~~~~~~~~~~~~~i 578 (635)
T 4eho_A 513 AREQVPQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDL-----------AGFFVESNDFLRNV 578 (635)
T ss_dssp HHHTSSSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGG-----------TTSSSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchh-----------hccCCCCHHHHHHH
Confidence 34445567788888888 89999999999999999999999999999998643 23445555555555
Q ss_pred HHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHH
Q 001215 816 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYA 873 (1122)
Q Consensus 816 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e 873 (1122)
...+.. +..+..|++++++||+.+|+.+++.|++|.+|+++|++++++|||++|++|
T Consensus 579 ~~~l~~-g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 579 AELIDH-GRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp HHHHHH-CCCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred HHHHHc-CCcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 544444 455678999999999999999999999999999999999999999988653
No 124
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=7.8e-10 Score=128.47 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=92.8
Q ss_pred cCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCc-ceeEEEEEEEeCCCCCCC
Q 001215 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIE-ERNVEIKLRAFGPRETSG 698 (1122)
Q Consensus 620 a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~-~~~~e~~l~~~~~~~dG~ 698 (1122)
..+.++..|.+|+++|+|+++.+++||+++|++|+++.+++||+|.+.+...+..++.++. ....+++++ ++||.
T Consensus 277 ~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~----~kdG~ 352 (387)
T 4f3l_B 277 SMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFK----IKDGS 352 (387)
T ss_dssp CCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEE----CTTSC
T ss_pred CceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEE----ccCCC
Confidence 4567888999999999999999999999999999999999999999999999999886654 334455554 78999
Q ss_pred eEEEEEEEEEecCC-CCCEEEEEEEEEcchhhHH
Q 001215 699 PVILVVNACCTQDT-KENVIGVCFVGQDITGQKL 731 (1122)
Q Consensus 699 ~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ 731 (1122)
++|+..++.+++|. +|++.+++++.+|||++|+
T Consensus 353 ~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 353 FITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999999997 8999999999999999984
No 125
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.99 E-value=2.3e-09 Score=105.39 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=87.3
Q ss_pred hhhhhhhcCCCCCCCCeEEec---CCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcch---------
Q 001215 741 GDYVGIVSSPSALIPPIFMTD---EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDT--------- 808 (1122)
Q Consensus 741 ~~l~~l~e~~~~li~~I~~~D---~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~--------- 808 (1122)
+.+..++++. . +|+++| .+|+|+++|+++++++||++++++|+.+. .++ +++.
T Consensus 26 ~~~~~~~~~~-~---~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~----------~~~~~~~~~~~~~ 90 (149)
T 3d72_A 26 QVELGPVDTS-V---ALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR-FLQ----------SPDGMVKPKSTRK 90 (149)
T ss_dssp SSCCCSCCTT-S---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGG----------STTSCCCTTCCCS
T ss_pred hHHHHhhcCC-c---cEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChh-HhC----------Ccccccccccccc
Confidence 3345666664 4 799999 79999999999999999999999999752 222 2221
Q ss_pred --HHHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeec
Q 001215 809 --LTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHV 865 (1122)
Q Consensus 809 --~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~D 865 (1122)
.......+...+..+.....++.+.+++|+.+|+.++..|+.+.+|++.+++++++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 91 YVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 333444555666666677888899999999999999999999999999999999887
No 126
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.98 E-value=1.6e-09 Score=106.57 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=84.7
Q ss_pred HHHHhcCccEEEec---CCCcEEeccHHHHHHcCCCchhhcCCcccccccCCc-----------hHHHHHHHHHHHcCCc
Q 001215 615 RLIETAAVPILAVD---ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDS-----------VDVVKNMLSSAFLGIE 680 (1122)
Q Consensus 615 ~lie~a~~gI~~~D---~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~-----------~~~~~~~l~~~l~g~~ 680 (1122)
.+++++ ++|+++| .+|+|+++|+++++++||+.++++|+++.++++++. .......+...+..+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNA 108 (149)
T ss_dssp CSCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTC
T ss_pred HhhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCC
Confidence 355664 9999999 799999999999999999999999999998888773 3444444445554444
Q ss_pred ceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEc
Q 001215 681 ERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQD 725 (1122)
Q Consensus 681 ~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~D 725 (1122)
....++.+. +++|..+|+.++..|+++.+|++.+++++++|
T Consensus 109 ~~~~e~~~~----~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 109 EVQVEVVNF----KKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp CEEEEEEEE----CTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ceEEEEEEE----CCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 444444333 78999999999999999999999999999877
No 127
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.98 E-value=2.9e-09 Score=96.63 Aligned_cols=104 Identities=16% Similarity=0.292 Sum_probs=84.5
Q ss_pred CeEEecC---CCCeeeeehhHHHhcCCChHHHhhhh-ccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEE
Q 001215 756 PIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERM-LIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFG 831 (1122)
Q Consensus 756 ~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~-l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~ 831 (1122)
+|+++|. +|+++++|+++++++|+++++++|+. ....+ .+++........+...+.++.....++.
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFL----------HGPCTQRRAAAQIAQALLGAEERKVEIA 72 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGG----------CCTTCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccc----------cCCcCCHHHHHHHHHHHhcCCCceEEEE
Confidence 6888886 59999999999999999999999987 23222 2233333444556666667777788888
Q ss_pred EEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHH
Q 001215 832 FFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 869 (1122)
Q Consensus 832 ~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITer 869 (1122)
+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 89999999999999999999999999999999999963
No 128
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.94 E-value=4.7e-09 Score=99.94 Aligned_cols=111 Identities=16% Similarity=0.275 Sum_probs=90.4
Q ss_pred hhhcCCCCCCCCeEEecC---CCCeeeeehhHHHhcCCChHHHhhhhc-cccccccccccccccCcchHHHHHHHHHHHh
Q 001215 745 GIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERML-IGEVFTVKNFGCRVKNHDTLTKLRIVMNKVI 820 (1122)
Q Consensus 745 ~l~e~~~~li~~I~~~D~---dg~ii~~N~a~~~l~G~~~eeliGk~l-~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l 820 (1122)
..+++.+. +++++|. +|+++++|+++.+++|++.++++|+.. +..+ .+++........+...+
T Consensus 23 ~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~ 89 (138)
T 2l0w_A 23 RKFEGQSR---KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFL----------HGPRTQRRAAAQIAQAL 89 (138)
T ss_dssp HHHTTTTS---EEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGG----------CCTTCCHHHHHHHHHHT
T ss_pred HHHhcCCC---CEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCccccc----------CCcccchhHHHHHHHHH
Confidence 34455666 8999999 999999999999999999999999873 3222 22333344455666677
Q ss_pred cCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccH
Q 001215 821 SGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASP 868 (1122)
Q Consensus 821 ~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITe 868 (1122)
..+.....++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||+
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~ 137 (138)
T 2l0w_A 90 LGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 137 (138)
T ss_dssp TCSSCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred hhcCCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccC
Confidence 777777888888999999999999999999999999999999999996
No 129
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.43 E-value=1.4e-10 Score=130.08 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=115.4
Q ss_pred EEEEEEEecCCCCCEEEEEEEEE-cchhh---HHHHHHHHhHhhhhhhhhc-----------------CCCCCCCCeEEe
Q 001215 702 LVVNACCTQDTKENVIGVCFVGQ-DITGQ---KLVMDKYTRIQGDYVGIVS-----------------SPSALIPPIFMT 760 (1122)
Q Consensus 702 v~v~~~pi~d~~G~v~gvv~v~~-DITer---K~aE~~L~~se~~l~~l~e-----------------~~~~li~~I~~~ 760 (1122)
+..+..|+++ +|+++|++++.+ |+|++ +..|...++....|..++. ++++ ||+++
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~d---GIivv 186 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGD---GFIRL 186 (305)
Confidence 7889999998 689999999999 99998 5667777777777777664 4555 99999
Q ss_pred cCCCCeeeeehhHHHhcC---CChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcC-CCcceeEEEEEccC
Q 001215 761 DEDGRCLEWNDGMEKLSG---LKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG-QDADKILFGFFDQQ 836 (1122)
Q Consensus 761 D~dg~ii~~N~a~~~l~G---~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g-~~~~~~e~~~~~~d 836 (1122)
|.+|+|+++|+++.+++| ++ ++++|+++. ++++... ..+.....+...+..++.+ +.....++.. +
T Consensus 187 D~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~-el~~~~~-----~~~~~~~~~~~~l~~vl~~~~~~~~~ei~~---~ 256 (305)
T 2ykf_A 187 DVDGVVSYASPNALSAYHRMGLT-TELEGVNLI-DATRPLI-----SDPFEAHEVDEHVQDLLAGDGKGMRMEVDA---G 256 (305)
Confidence 999999999999999985 44 788998763 3322100 0000000112222223333 3332222221 2
Q ss_pred CCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001215 837 GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYIRR 896 (1122)
Q Consensus 837 G~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~L~~~ae~~~~~k~~fLa~isH 896 (1122)
| .++.++..|+.+ +|+..|++.+++|||+.++.+++|+. |...+..|.|
T Consensus 257 ~--~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~--------K~~~IrEIHH 305 (305)
T 2ykf_A 257 G--ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALIS--------KDATIREIHH 305 (305)
Confidence 3 456777889886 58888999999999999988877643 4455566665
No 130
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.90 E-value=4.2e-09 Score=98.69 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=80.5
Q ss_pred HHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcc-eeEEEEEEEeC
Q 001215 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEE-RNVEIKLRAFG 692 (1122)
Q Consensus 614 ~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~-~~~e~~l~~~~ 692 (1122)
..+++++++||+++|.+|+|+++|+++++++|++.++++|+++.+++++... ....+..++..+.. ...++.+.
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--- 84 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTFV--- 84 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEE---
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEEe---
Confidence 4589999999999999999999999999999999999999999988764321 12233344433322 22333332
Q ss_pred CCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 693 PRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 693 ~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
++|..+|+.++..|+++ +|. .|++.+++||+
T Consensus 85 --~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 85 --VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp --ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred --cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 36888999999999999 776 69999999985
No 131
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=98.89 E-value=2.8e-08 Score=101.94 Aligned_cols=155 Identities=10% Similarity=0.059 Sum_probs=110.5
Q ss_pred HHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCC-------CccCCCCCCCC
Q 001215 199 KLAAKAISR-LQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE-------PYLGFHYPATD 270 (1122)
Q Consensus 199 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~-------~~lg~~~pa~d 270 (1122)
.++..+... +.+ ..|++++++.+++++++++|+||+.||-+++++..-+..-....... ..-..++|...
T Consensus 13 ~~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (189)
T 2zmf_A 13 DFLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK 90 (189)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc
Confidence 334444444 355 46999999999999999999999999999998876554433222111 11122233221
Q ss_pred ccHHHHHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCccccccc
Q 001215 271 IPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDND 350 (1122)
Q Consensus 271 ip~~~r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~ 350 (1122)
.-....+..++.-.|+|+...|-. +.+......+++++.|++||+.+
T Consensus 91 --~~~~~v~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~--------- 137 (189)
T 2zmf_A 91 --GIAGQVARTGEVLNIPDAYADPRF----------------------NREVDLYTGYTTRNILCMPIVSR--------- 137 (189)
T ss_dssp --HHHHHHHHHCCCEEESCGGGSTTC----------------------CTHHHHHHCCCCCCEEEEEEEET---------
T ss_pred --cHHHHHHHhCCeEEEecccccccc----------------------cccchhhcccccceEEEeeeccc---------
Confidence 123456777887788885433221 25566788899999999999988
Q ss_pred ccccCceeeEEEeecC-CCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 351 QEQGRKLWGLVVCHHT-SPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 351 ~~~~~~lWGl~~~h~~-~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|++||.|..+++ .|+.++.+....++.++..+++.|..
T Consensus 138 ----~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~n 176 (189)
T 2zmf_A 138 ----GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHC 176 (189)
T ss_dssp ----TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999987655 68999999999999999988888754
No 132
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.85 E-value=2.9e-09 Score=100.75 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=73.6
Q ss_pred HhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHH
Q 001215 739 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 818 (1122)
Q Consensus 739 se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~ 818 (1122)
++++|+.+++++++ +|+++|.+|+++++|+++++++|+++++++|+++. .+.+++....+......
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~ 82 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLS-----------AVMDSEAANQRLEAGKS 82 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGG-----------GSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHH-----------HhCCHHHHHHHHHHHHH
Confidence 78889999999999 89999999999999999999999999999999853 22223333333333345
Q ss_pred HhcCCCcceeEEEEEccCCC-EEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 819 VISGQDADKILFGFFDQQGK-YVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 819 ~l~g~~~~~~e~~~~~~dG~-~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
....+... ...+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 83 ~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 83 AVENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HHHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred HhcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 55544432 233455 67888999998765 66678999999998
No 133
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.83 E-value=1.3e-08 Score=96.28 Aligned_cols=95 Identities=11% Similarity=0.040 Sum_probs=69.5
Q ss_pred hhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCC
Q 001215 745 GIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQD 824 (1122)
Q Consensus 745 ~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~ 824 (1122)
.+++++++ +|+++|.+|+++++|+++.+++||+++|++|+.+ .++.||++...+...+. ....
T Consensus 3 ~lle~~~d---~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~-----------~~~ihp~D~~~~~~~~~---~~~~ 65 (111)
T 2vlg_A 3 FPLQTKTD---IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFL-----------KTFLHEEDQFLVESYFY---NEHH 65 (111)
T ss_dssp ------CC---EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHH---CSCC
T ss_pred chhhcCCC---EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcH-----------HHeECHhHHHHHHHHHh---ccCC
Confidence 46677777 7999999999999999999999999999999874 35677888887765543 2333
Q ss_pred cceeEEEEEccCCCEEEEEEEEeeeeCCCCCE
Q 001215 825 ADKILFGFFDQQGKYVEALLSANKRTNAEGKI 856 (1122)
Q Consensus 825 ~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i 856 (1122)
....++++.++||+++|+..+..++.+.++.-
T Consensus 66 ~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~~ 97 (111)
T 2vlg_A 66 LMPCTFRFIKKDHTIVWVEAAVEIVTTRAERT 97 (111)
T ss_dssp SSCEEEEEECTTSCEEEEEEEEEEC-------
T ss_pred CccEEEEEEcCCCCEEEEEEEEEEEecccCCc
Confidence 45678999999999999999999998876543
No 134
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.83 E-value=5e-09 Score=101.92 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=77.6
Q ss_pred hhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHh
Q 001215 741 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVI 820 (1122)
Q Consensus 741 ~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l 820 (1122)
..++.+++++++ +|+++|.+|+|+++|+++++++||++++++|+++. ++++. +....+...+....
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~-~l~~~----------~~~~~~~~~~~~~~ 72 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWR-NFLTE----------HHQARYDNLLSHDV 72 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGG-GGBCT----------TCCGGGGCTTC---
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHH-HHcCh----------HhHHHHHHHHHHHH
Confidence 457789999998 89999999999999999999999999999999863 33332 11111111111111
Q ss_pred cCC-------CcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccH
Q 001215 821 SGQ-------DADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASP 868 (1122)
Q Consensus 821 ~g~-------~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITe 868 (1122)
..+ .....++.++++||+.+|+.++.+|+. ++... ++++++|...
T Consensus 73 ~~~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~--~~~~~-~v~~~~~~~~ 124 (129)
T 3mfx_A 73 QLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIP--GHEPM-FVMVMHDLEH 124 (129)
T ss_dssp -------CCSCEEEEEEEEECTTSCEEEEEEEEEEEC--SSSCE-EEEEEEEC--
T ss_pred hcCcccccccCCCceEEEEEcCCCCEEEEEEEEEEec--CCCcE-EEEEEechhh
Confidence 111 123578899999999999999999997 33333 7788888753
No 135
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=98.83 E-value=1.6e-07 Score=95.48 Aligned_cols=160 Identities=9% Similarity=0.031 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEE-EecCCCC-CCccCCCCCCCCccHHH
Q 001215 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVA-ECRRPDL-EPYLGFHYPATDIPQAS 275 (1122)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vva-E~~~~~~-~~~lg~~~pa~dip~~~ 275 (1122)
.+++..+...|.+ +.|++++++.+++.+++++|+||+.||-+++++..-.++ +...... ....+..+|..+= -+
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGT--WL 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTS--GG
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCcccc--HH
Confidence 4556777777888 679999999999999999999999999999987665553 2111111 1222233332211 12
Q ss_pred HHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccC
Q 001215 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (1122)
Q Consensus 276 r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~ 355 (1122)
...+..++..++ |....+- ..+ ..+++..+.+...|+++.|++||+.+ +
T Consensus 81 ~~v~~~~~~~~~-d~~~~~~-~~~----------------~~~~~~~~~~~~~~~~s~l~vPL~~~-------------~ 129 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDIP-SFG----------------ADGAPLLWTLHELGMRQIVLSPLRSG-------------G 129 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTCT-TTT----------------TTTCHHHHHHHHHTCCEEEEEEEEET-------------T
T ss_pred HHHhccCCceEe-chhhccc-ccC----------------CcchhHHHHHHHcCceEEEEEEEEEC-------------C
Confidence 344555555555 5332100 000 00124556789999999999999988 9
Q ss_pred ceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 356 ~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+++|.|..+++.|+.++...+..++.++..+++.|..
T Consensus 130 ~~iGvL~l~~~~~~~f~~~d~~ll~~lA~~~a~Ai~n 166 (177)
T 3k2n_A 130 RVIGFLSFVSAEEKLWSDGDKSLLSGVSSSIAIAVSN 166 (177)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888754
No 136
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.82 E-value=7e-08 Score=96.98 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=113.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCC
Q 001215 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNK 283 (1122)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~ 283 (1122)
+...|.+ +.+++++++.+++.+++++|+||+.||-++++...-.+.-+..+.-...-+..||-.+=..-....+..++
T Consensus 7 i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T 3oov_A 7 ISSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQ 84 (169)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCC
Confidence 4444555 56999999999999999999999999999988755555444444433445666664433455677788888
Q ss_pred eEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEe
Q 001215 284 VRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVC 363 (1122)
Q Consensus 284 ~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~ 363 (1122)
.-+|.|+...|-..-+. ...+++...|+++.+++||+.+ |+++|.|..
T Consensus 85 ~~~i~d~~~~~~~~~~~-------------------~~~~~~~~~~~~s~l~vPl~~~-------------~~~iGvl~~ 132 (169)
T 3oov_A 85 VYMIDDVSAYPTDFRLQ-------------------SPYDAIRALRSKSFVICPIVVK-------------GEAIGVFAV 132 (169)
T ss_dssp CEEESCGGGSCGGGSCC-------------------TTGGGCGGGCCSSEEEEEEEET-------------TEEEEEEEE
T ss_pred CEEeccccchhhhhhcc-------------------ccHHHHHhcCcCcEEEEEEEeC-------------CcEEEEEEE
Confidence 88888855443211000 0023467789999999999988 999999999
Q ss_pred ecCCCC-CCChhhHHHHHHHHHHHHHHHHH
Q 001215 364 HHTSPR-FVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 364 h~~~pr-~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
++..++ .++.+.....+.++..++..|..
T Consensus 133 ~~~~~~~~f~~~d~~~l~~~a~~~a~ai~n 162 (169)
T 3oov_A 133 DNRSSRRSLNDTDVDTIKLFADQASSAIVR 162 (169)
T ss_dssp ECTTSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 988764 48999888889888888887754
No 137
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.82 E-value=1.2e-09 Score=124.74 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEE
Q 001215 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVE 685 (1122)
Q Consensus 606 L~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e 685 (1122)
|++++++++.++++++++|+++|.+|+|++||+++++++||+.++++|+++.++.+++.. ...+..++..+....
T Consensus 3 l~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 77 (349)
T 3a0r_A 3 VEHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEI---GSVAESVFENKEPVF-- 77 (349)
T ss_dssp ------CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHH---HHHHHHHHHHCCCCE--
T ss_pred hHHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHH---HHHHHHHHhcCCcee--
Confidence 345566788999999999999999999999999999999999999999999988544432 233444444333211
Q ss_pred EEEEEeCCCCCCCeEEEEEEEEEecCCCCCE-EEEEEEEEcchhhHHHHHHHHhH
Q 001215 686 IKLRAFGPRETSGPVILVVNACCTQDTKENV-IGVCFVGQDITGQKLVMDKYTRI 739 (1122)
Q Consensus 686 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v-~gvv~v~~DITerK~aE~~L~~s 739 (1122)
.. ...++.+|+.++..|+++.+|.. .|++++++|||++|++|+++++.
T Consensus 78 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~ 126 (349)
T 3a0r_A 78 --LN----FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR 126 (349)
T ss_dssp --EE----CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH
T ss_pred --ec----ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH
Confidence 11 11234568889999999988875 59999999999999998877654
No 138
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.81 E-value=2.1e-09 Score=100.94 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=76.7
Q ss_pred hcCccEEEecCC-CcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcC-Ccce---eEEEEEEEeCC
Q 001215 619 TAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLG-IEER---NVEIKLRAFGP 693 (1122)
Q Consensus 619 ~a~~gI~~~D~d-G~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g-~~~~---~~e~~l~~~~~ 693 (1122)
+.+++|+++|.+ |+|+++|++++++|||+.++++|+++.+++++++.............. +... ..++.+ .
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 81 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDI----I 81 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE----C
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEE----E
Confidence 455799999999 999999999999999999999999999999887655433322212221 1110 112222 3
Q ss_pred CCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 694 RETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 694 ~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
++||..+|+.++..|+.+.++. +++++++|++
T Consensus 82 ~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 82 SRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred ecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 7899999999999999876543 6788888875
No 139
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.80 E-value=1.3e-08 Score=117.51 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=91.0
Q ss_pred HHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEe
Q 001215 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAF 691 (1122)
Q Consensus 612 ~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~ 691 (1122)
++..+++++++||+++|.+|+|++||++ +++| ++.++++|+++.+++++.....+...+.....|.. ...++.+.
T Consensus 240 ~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~~~l~~~l~~g~~-~~~~~~~~-- 314 (369)
T 3cax_A 240 ELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVVNKILKAFKEGRK-KEATFWLR-- 314 (369)
T ss_dssp HHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHHHHHHHHHHHTSC-SCEEEEEE--
T ss_pred HHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHHHHHHHHHHcCCc-eEEEEEEe--
Confidence 5678999999999999999999999999 9999 89999999999998876655555444444444433 33333332
Q ss_pred CCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHH
Q 001215 692 GPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDK 735 (1122)
Q Consensus 692 ~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~ 735 (1122)
.+| +++.++..|++|.+|++.|++.+++|||+.++.+.+
T Consensus 315 ---~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 315 ---LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp ---ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred ---eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 124 688999999999999999999999999998877544
No 140
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.79 E-value=5.9e-09 Score=98.95 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=79.1
Q ss_pred HHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHH
Q 001215 735 KYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 814 (1122)
Q Consensus 735 ~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~ 814 (1122)
.+......++.+++++++ +|+++|.+|+|+++|+++++++|+++++++|+.+. ++++ +.....+..
T Consensus 6 ~~~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~-~~~~----------~~~~~~~~~ 71 (118)
T 3fg8_A 6 HHHHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVT-EVLP----------ETQGSYFDA 71 (118)
T ss_dssp -------CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHH-HHCG----------GGTTSHHHH
T ss_pred ccccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHH-HHcC----------ccchHHHHH
Confidence 345667789999999999 89999999999999999999999999999999863 2332 222233555
Q ss_pred HHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHH
Q 001215 815 VMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 869 (1122)
Q Consensus 815 ~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITer 869 (1122)
.+..++..+.....++.....+|. |+.++..|..+ |++++++|||++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 72 LCRKVLATGREQQTRVDSLYSPGM--TIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp HHHHHHHHCCCEEEEEECSSSTTC--EEEEEEEEETT------EEEEEEEECSCC
T ss_pred HHHHHHHcCCceEEEEEEEcCCCe--EEEEEEEEcCC------cEEEEEEeccCC
Confidence 666777666665554333344664 56677777653 378899999974
No 141
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.78 E-value=1.6e-08 Score=96.43 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=74.7
Q ss_pred hhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcC------------CChHHHhhhhccccccccccccccccCcch
Q 001215 741 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSG------------LKREEAIERMLIGEVFTVKNFGCRVKNHDT 808 (1122)
Q Consensus 741 ~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G------------~~~eeliGk~l~~~i~~~~~~~~~l~~~d~ 808 (1122)
.+++.+++++++ ||+++|.+|+|+++|+++++++| +++++++|+++. ++++. +..
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~---------~~~ 71 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKN---------PAH 71 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSS---------HHH
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCC---------HHH
Confidence 568889999998 99999999999999999999996 888999998752 22211 111
Q ss_pred HHHHHHHHHHHhcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHH
Q 001215 809 LTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 869 (1122)
Q Consensus 809 ~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITer 869 (1122)
....+.. .. .....++. .+|+ ++.++.+|+.+.+|++.|++++++|||++
T Consensus 72 ---~~~~~~~-~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 72 ---QRHLLAN-LT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp ---HHHHHHH-CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred ---HHHHHhC-cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 1112221 11 22333332 2554 45778999999999999999999999974
No 142
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.78 E-value=1.6e-09 Score=101.08 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCC---CchhhcCCcccccccCCchHHHHHHHHHHHcCC
Q 001215 603 IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGL---TVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGI 679 (1122)
Q Consensus 603 ~~eL~~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~---s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~ 679 (1122)
.++++..+++++.++++++++|+++|.+|+|+++|+++++++|+ +.++++|+++.+++++.. +..++.++
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~ 79 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDG 79 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccC
Confidence 34566667788999999999999999999999999999999997 889999999998886643 23333333
Q ss_pred cceeEEEEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcch
Q 001215 680 EERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 727 (1122)
Q Consensus 680 ~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 727 (1122)
.... ..... .+| .|+.++..|+.+ +|++.|++++++|||
T Consensus 80 ~~~~-~~~~~-----~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 80 TPRR-DEEIT-----IKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCC-CCCEE-----SSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ceec-cEEEE-----ECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 2211 11111 133 578888899988 888889999999998
No 143
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.76 E-value=1.3e-08 Score=101.81 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=86.0
Q ss_pred hhhhhhhcCCCCCCCCeEEecCCCCeeeeehh---HHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHH
Q 001215 741 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDG---MEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMN 817 (1122)
Q Consensus 741 ~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a---~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~ 817 (1122)
..+++++++++. +|+++|.+|+|++||++ +++++| ..++++|+++. .+ ++.........+.
T Consensus 19 ~~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~-----------~~-~~~~~~~~v~~i~ 82 (151)
T 2qkp_A 19 EQANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVE-----------LC-HPPKVLDKVKKVF 82 (151)
T ss_dssp HHHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGG-----------GS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHH-----------Hh-CCHHHHHHHHHHH
Confidence 457889999998 99999999999999999 999999 56789999863 11 2222222223344
Q ss_pred HHhcCCCcceeEEEEEccC-CCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHHH
Q 001215 818 KVISGQDADKILFGFFDQQ-GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 875 (1122)
Q Consensus 818 ~~l~g~~~~~~e~~~~~~d-G~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~~ 875 (1122)
..+..+.....++.+...+ | +++.++..|++|.+|++.|++.+++|||+.++.+.+
T Consensus 83 ~~l~~g~~~~~~~~~~~~~~~--~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 83 ELLRNGQRDKVNMWFQSERLG--KFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp HHHHTTSBSEEEEEEEETTTT--EEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC
T ss_pred HHHHcCCccEEEEEEecCCCC--eEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhh
Confidence 4444455555555553332 4 456788999999999999999999999987766554
No 144
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.76 E-value=5.7e-07 Score=104.62 Aligned_cols=319 Identities=11% Similarity=0.093 Sum_probs=182.4
Q ss_pred HHHHHHHhhcCCCCCHHH----HHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHH
Q 001215 201 AAKAISRLQSLPSGNISL----LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (1122)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~----~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r 276 (1122)
+..++..+.+ .+++. +++.+++.+++++|+||+.||-+++++ ++....+....-....+.++|... --+.
T Consensus 11 l~~~~~~l~~---~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~-~~l~~~~~~g~~~~~~~~~~~~~~--g~~g 84 (398)
T 1ykd_A 11 VHQTLSMLDS---HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEK-QELWSIVAAGEGDRSLEIRIPADK--GIAG 84 (398)
T ss_dssp HHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTT-TEEEEEEECCGGGCCCCCEEETTS--HHHH
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCC-CeEEEEeecCCCCccceeecCCCC--chhh
Confidence 3445555543 36666 555666669999999999999999875 455555443322234466666442 2345
Q ss_pred HHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEE-eCCcccccccccccC
Q 001215 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDNDQEQGR 355 (1122)
Q Consensus 277 ~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~-~~~~~~~~~~~~~~~ 355 (1122)
..+..++.-.|+|+....- |.--+.+......+++++.|++||+. + |
T Consensus 85 ~v~~~~~~v~i~d~~~~~~-------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~~-------------g 132 (398)
T 1ykd_A 85 EVATFKQVVNIPFDFYHDP-------------------RSIFAQKQEKITGYRTYTMLALPLLSEQ-------------G 132 (398)
T ss_dssp HHHHHCCCEEECSCGGGSG-------------------GGHHHHHHHHHHCCCCSCEEEEEEECSS-------------C
T ss_pred hhhccCcEEeccchhcccc-------------------hhhcccccCcccCcCCceEEEEEEECCC-------------C
Confidence 5667777777777432200 11112444455678899999999985 5 8
Q ss_pred ceeeEEEeecC---------------CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc-c
Q 001215 356 KLWGLVVCHHT---------------SPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLR-EKHILRTQTVLCDMLL-R 418 (1122)
Q Consensus 356 ~lWGl~~~h~~---------------~pr~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 418 (1122)
++||.|.+++. .|+.++.+....++.++..++..|......+...+ .+....+.+....+.. .
T Consensus 133 ~~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~ 212 (398)
T 1ykd_A 133 RLVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSS 212 (398)
T ss_dssp CEEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999988 78999999999999999988888764332222111 1111222222222222 2
Q ss_pred CCCcccccC-CcchhhhccCCeEEEEEC----CeEEEecC----------CCCHHHHHHHHHHHHhccCCCeEEee-ccc
Q 001215 419 DSPVGIVTQ-TPNVMDLVKCDGAALYYR----GKLWLLGV----------TPTEEQIKDIAEWLLEYHRGSTGLST-DSL 482 (1122)
Q Consensus 419 ~~~~~~~~~-~~~~~~l~~~~g~al~~~----~~~~~~G~----------~p~~~~~~~l~~~l~~~~~~~~~~~t-~~l 482 (1122)
.....+... ...+..+++||+++|+.- +.++.... .|.. ..++.|..... . .++.. |--
T Consensus 213 ~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~-~-~~~i~~d~~ 287 (398)
T 1ykd_A 213 LDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASG-Q-KLNIPFDLY 287 (398)
T ss_dssp CCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHC-C-CEEECSCGG
T ss_pred CCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccC-C-eEEeccccc
Confidence 222222211 345677889998877642 23443221 1111 24566665542 2 34443 322
Q ss_pred cccCCCCc----cccccccceEEEEEcC-CC----CeEEEeccccceEEeecCCCCCCCCCCCCCccccCchHHHHHHHh
Q 001215 483 VEAGYPGA----LALGDAVCGIAAVKIT-SK----DFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVV 553 (1122)
Q Consensus 483 ~~~~~p~~----~~~~~~~~g~l~~~i~-~~----~~l~wfR~~~~~~v~WaG~p~~~~~~~~~~~l~PR~SF~~w~e~v 553 (1122)
.+..+... ...+-....++++||- .+ ..|..+++.. .|+ .|+.+|+.|....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~------~~~-------------~~~~~~~~~~~~~ 348 (398)
T 1ykd_A 288 DHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK------TGE-------------FPPYNPETWPIAP 348 (398)
T ss_dssp GSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC------SSC-------------CCCCCGGGTTCCC
T ss_pred cCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC------ccc-------------ccccccccccccc
Confidence 21111111 0012235679999996 33 1222222111 011 2355667898888
Q ss_pred cccccccchhHHHHHHHHHHHHHhhhhh
Q 001215 554 KQRSLPWEDVEMDAIHSLQLILRGSLQD 581 (1122)
Q Consensus 554 ~g~s~pW~~~El~aa~~L~liL~~~l~~ 581 (1122)
.+...+|+..+++.+..+...+..++.+
T Consensus 349 ~~~~~~f~~~d~~ll~~la~~~a~al~n 376 (398)
T 1ykd_A 349 ECFQASFDRNDEEFMEAFNIQAGVALQN 376 (398)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999888887666666653
No 145
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.73 E-value=3.1e-07 Score=92.38 Aligned_cols=157 Identities=9% Similarity=0.079 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHH
Q 001215 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQAS 275 (1122)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~ 275 (1122)
+....+..+...|.+ +.+++++++.+++.+.+++|+|++.||-+++++..-.+.-+...+-+..-...+|..+ .-.
T Consensus 5 ~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~ 80 (171)
T 3trc_A 5 NMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GLI 80 (171)
T ss_dssp HHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HHH
T ss_pred HHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Chh
Confidence 445566777777888 5699999999999999999999999999999875433333332222222222444433 335
Q ss_pred HHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccC
Q 001215 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (1122)
Q Consensus 276 r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~ 355 (1122)
...+..++.-+|.|+...|-.. +...+...|+++.+++||+.+ |
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~-----------------------~~~~~~~~~~~s~l~vPl~~~-------------~ 124 (171)
T 3trc_A 81 GLVGEREEPINLADAPLHPAYK-----------------------HRPELGEEDYHGFLGIPIIEQ-------------G 124 (171)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC-----------------------CCGGGCCCCCCEEEEEEEEET-------------T
T ss_pred hHHHhcCCeEEeCCCCCCCccc-----------------------ccccCCcccccEEEEEeEEEC-------------C
Confidence 5667777777787744322110 000124578899999999988 9
Q ss_pred ceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 356 ~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+++|.|.+.+..|+.++...+..++.++..++..|..
T Consensus 125 ~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 125 ELLGILVIQQLESHHFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp EEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887743
No 146
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=98.72 E-value=4.5e-07 Score=90.61 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHH
Q 001215 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRF 277 (1122)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~ 277 (1122)
...+..+...|.+ +.+++++++.+++.+.+++++|++.||-++++...-.+.-+...+-...-+..+|..+ .-...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE--GLVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS--HHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC--Ceehh
Confidence 4455667777777 5699999999999999999999999999998865444433333322223233444332 24556
Q ss_pred HHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCce
Q 001215 278 LIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKL 357 (1122)
Q Consensus 278 l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~l 357 (1122)
.+..++...+.|+...|-. .+.......|+++.+++||+.+ |++
T Consensus 85 ~~~~~~~~~~~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~-------------~~~ 128 (171)
T 3ci6_A 85 VGQREEIVNLENASKHERF-----------------------AYLPETGEEIYNSFLGVPVMYR-------------RKV 128 (171)
T ss_dssp HHHHTSCEEESSGGGSTTC--------------------------------CCCEEEEEEEEET-------------TEE
T ss_pred hhccCceEEecCCCcCcch-----------------------hccccccccccceEEEEeEEEC-------------CEE
Confidence 6777777778774332210 1111236678999999999987 999
Q ss_pred eeEEEeecCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 358 WGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 358 WGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+|.|.+.+..|+.++...+..++.++..++..|..
T Consensus 129 ~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 129 MGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887754
No 147
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=98.70 E-value=2.6e-07 Score=93.75 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=105.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHh
Q 001215 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMK 281 (1122)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~ 281 (1122)
..+...|.+ +.+++++++.+++.+.+++|+|++.||-+++++. .+++ +...+-...-+..+|-.+= -....+..
T Consensus 18 ~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (181)
T 3e0y_A 18 EEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDG--ITGSVARD 91 (181)
T ss_dssp HHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTS--SHHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCC--eeeehhhc
Confidence 456666777 5699999999999999999999999999999876 4433 3332222222334443321 23456677
Q ss_pred CCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEE
Q 001215 282 NKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLV 361 (1122)
Q Consensus 282 ~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~ 361 (1122)
++..+|.|+...|-. .+...+...|+++.+++||+.+ |+++|.|
T Consensus 92 ~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~-------------~~~iGvl 135 (181)
T 3e0y_A 92 GQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDK-------------KEVYGVI 135 (181)
T ss_dssp CCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECS-------------SCEEEEE
T ss_pred CCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeC-------------CeEEEEE
Confidence 777788885543221 1112245678999999999987 9999999
Q ss_pred EeecCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 362 VCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 362 ~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
.+++..|+.++......++.++..++..|..
T Consensus 136 ~~~~~~~~~f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 136 NLNTTSIRSFHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp EEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888753
No 148
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=98.67 E-value=2e-07 Score=95.30 Aligned_cols=143 Identities=12% Similarity=0.047 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCC
Q 001215 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLA 292 (1122)
Q Consensus 213 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~ 292 (1122)
+.+++++++.+++.+.+++|+|++.||-+++++.-.+++-.-.+....--....|..+ ......+..++..++.|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4489999999999999999999999999955554445554332221100112233122 34566777888888888432
Q ss_pred CcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCc-eeeEEEeec-CCCCC
Q 001215 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK-LWGLVVCHH-TSPRF 370 (1122)
Q Consensus 293 ~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~-lWGl~~~h~-~~pr~ 370 (1122)
.+ .|....++...|+++.+++||..+ ++ +||.|..++ ..|+.
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~-------------~~~~~GvL~l~~~~~~~~ 136 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRK-------------GEPPFGILSVFSRTIVGL 136 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCT-------------TSCCCEEEEEEESSCSSC
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeC-------------CCeEEEEEEEecCCCCCC
Confidence 21 246778889999999999999877 88 999999999 67999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH
Q 001215 371 VPFPLRYACEFLIQVFGVQVNKE 393 (1122)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~~~~~ 393 (1122)
++.+.....+.++..++..|...
T Consensus 137 f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 137 FNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888643
No 149
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.67 E-value=2.4e-07 Score=95.13 Aligned_cols=155 Identities=10% Similarity=0.083 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCC-------C-CCccCCCCCC
Q 001215 198 YKLAAKAISRLQSLPS-GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD-------L-EPYLGFHYPA 268 (1122)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~-------~-~~~lg~~~pa 268 (1122)
...+..+...|.+ + .|++++++.+++.+++++|+|++.||-++++.. +.+......+ + +...+.++|.
T Consensus 12 ~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2e4s_A 12 NDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNK-ELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEEEEEEEETTEEEEEECCCCEEET
T ss_pred HHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEEeccCccccccccccCCcceEeeC
Confidence 3444555666644 4 499999999999999999999999999998754 4433321111 1 1234555553
Q ss_pred CCccHHHHHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCccccc
Q 001215 269 TDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELD 348 (1122)
Q Consensus 269 ~dip~~~r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~ 348 (1122)
. ..-+...+..++.-+|.|+...|- .+.+...+..+++++.|++||+.+
T Consensus 89 ~--~~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~------- 137 (189)
T 2e4s_A 89 E--KGIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSR------- 137 (189)
T ss_dssp T--SHHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEET-------
T ss_pred C--CcHHHHHHHhCCEEEecCCCcCcc----------------------cChhhccccCCccceEEEEEeccC-------
Confidence 3 234566777888878887433221 113456677899999999999987
Q ss_pred ccccccCceeeEEEeecCCCC-CCChhhHHHHHHHHHHHHHHHHH
Q 001215 349 NDQEQGRKLWGLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 349 ~~~~~~~~lWGl~~~h~~~pr-~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|+++|.|.+++..++ .++......++.++..+++.|..
T Consensus 138 ------~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~n 176 (189)
T 2e4s_A 138 ------GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHC 176 (189)
T ss_dssp ------TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998766 89999999999999988888754
No 150
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.65 E-value=2.2e-08 Score=103.61 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEE
Q 001215 608 IITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIK 687 (1122)
Q Consensus 608 ~~e~~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~ 687 (1122)
+..+++..+++++++||+++|.+|+|+++|++++++||++.++++|+++.+++++.... ..+..+........
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 149 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL-------RWLESEPQDSHNEH 149 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHH-------HHHHTCCCSCEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHH-------HHHhcCCCCCcceE
Confidence 34467889999999999999999999999999999999999999999999988765432 22222221112222
Q ss_pred EEEeCCCCCCCeEEEEEEEEEecCCCCC----EEEEEEEEEcchhhH
Q 001215 688 LRAFGPRETSGPVILVVNACCTQDTKEN----VIGVCFVGQDITGQK 730 (1122)
Q Consensus 688 l~~~~~~~dG~~~~v~v~~~pi~d~~G~----v~gvv~v~~DITerK 730 (1122)
+.. +| .++.++..|+++.+|+ +.|++.+++|||+++
T Consensus 150 ~~~-----~g--~~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 150 VVI-----NG--QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEE-----TT--EEEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred EEE-----CC--eEEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 221 34 3567788999886666 789999999999876
No 151
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.63 E-value=2.2e-06 Score=107.32 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEec-CCCCCCccCCCCCCCCccHHHH
Q 001215 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECR-RPDLEPYLGFHYPATDIPQASR 276 (1122)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~-~~~~~~~lg~~~pa~dip~~~r 276 (1122)
.+.+.+++..|. +.+++++++++++.+++++|+||+.||-|++|+. +.+.... ...++. ..++|-. --..
T Consensus 14 ~~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~-~l~~~~~~g~~~~~--~~~~p~~---Gi~g 84 (691)
T 3ibj_A 14 DRKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNL-QLSCKVIGDKVLGE--EVSFPLT---GCLG 84 (691)
T ss_dssp HHHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSS-EEEEEEETTEEEEE--EEEEECC---SSSH
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCC-eEEEEecCCCcccc--ceecCCc---cHHH
Confidence 344556666665 4599999999999999999999999999999854 3433222 211221 1234433 2334
Q ss_pred HHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCc
Q 001215 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (1122)
Q Consensus 277 ~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~ 356 (1122)
..+..++.-.|+|+...| ..+..+....+++|.|++||+.+ .+|+
T Consensus 85 ~v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~-----------~~g~ 129 (691)
T 3ibj_A 85 QVVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISR-----------ATDQ 129 (691)
T ss_dssp HHHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECS-----------SSCS
T ss_pred HHHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcC-----------CCCc
Confidence 556666666666633221 13566777888999999999853 2389
Q ss_pred eeeEEEeecCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc-cCCCcccccC-Ccchh
Q 001215 357 LWGLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHIL-RTQTVLCDMLL-RDSPVGIVTQ-TPNVM 432 (1122)
Q Consensus 357 lWGl~~~h~~~-pr~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 432 (1122)
+||.|..+++. ++.++.+.....+.++..++..|.....++...++++.+ ...+....+.. ......+... ...+.
T Consensus 130 viGvL~l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~ 209 (691)
T 3ibj_A 130 VVALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEAR 209 (691)
T ss_dssp EEEEEEEESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHH
T ss_pred EEEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999988875 567888888888888888887775432222222222111 11212122222 1122222221 34567
Q ss_pred hhccCCeEEEEECC--eEEEe---cCCCCHH-------HHHHHHHHHHhccCCCeEEeeccccccCCCCcc--ccccccc
Q 001215 433 DLVKCDGAALYYRG--KLWLL---GVTPTEE-------QIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGAL--ALGDAVC 498 (1122)
Q Consensus 433 ~l~~~~g~al~~~~--~~~~~---G~~p~~~-------~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~--~~~~~~~ 498 (1122)
.+++||.++|+.-+ +.+.. |..+++. --..++.|..... . .+...|-..+..++... ..+..+.
T Consensus 210 ~~l~ad~~~i~L~d~~~l~~~~~~g~~~~~~~~~~~~~~~~gi~g~v~~~g-~-~v~i~d~~~d~~~~~~~~~~~g~~~r 287 (691)
T 3ibj_A 210 NLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTG-Q-ILNIPDAYAHPLFYRGVDDSTGFRTR 287 (691)
T ss_dssp HHHTEEEEEEEEECSSEEEEECCSSSCCSSCCCEEEEETTSHHHHHHHHHC-S-CEEESCSTTSTTC------CCSCCCC
T ss_pred HHhCCCeEEEEEEeCCeEEEEeecCCcccccccceeccCCCCHHHHHHHhC-C-EEEecCcccCccccchhhcccCCeee
Confidence 78899988886533 33322 2221100 0135677776653 2 34444433322222111 1122355
Q ss_pred eEEEEEcCC
Q 001215 499 GIAAVKITS 507 (1122)
Q Consensus 499 g~l~~~i~~ 507 (1122)
.++++||-.
T Consensus 288 S~L~vPL~~ 296 (691)
T 3ibj_A 288 NILCFPIKN 296 (691)
T ss_dssp CEEEEECCC
T ss_pred eEEEEeEEC
Confidence 788888864
No 152
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.62 E-value=1.1e-07 Score=106.53 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=101.3
Q ss_pred ccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcc---eeEEEEEEEeCCCCCCC
Q 001215 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEE---RNVEIKLRAFGPRETSG 698 (1122)
Q Consensus 622 ~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~---~~~e~~l~~~~~~~dG~ 698 (1122)
.-+...+.+|+++|+|+++.+++||.++|++|+++.+++||+|.+.+.+.+..+++++.. ...+++++ ++||.
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~----~kdG~ 250 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFC----TQNGE 250 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEE----CTTSC
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEE----ccCCC
Confidence 456678899999999999999999999999999999999999999999999999886554 34555655 78999
Q ss_pred eEEEEEEEEEecCC-CCCEEEEEEEEE--------c-----chhhHHHHHHHHhHhhhhhhhhc
Q 001215 699 PVILVVNACCTQDT-KENVIGVCFVGQ--------D-----ITGQKLVMDKYTRIQGDYVGIVS 748 (1122)
Q Consensus 699 ~~~v~v~~~pi~d~-~G~v~gvv~v~~--------D-----ITerK~aE~~L~~se~~l~~l~e 748 (1122)
++|+..+..+++|. ++++..++++-+ | +++++..+.++++.+++++.++-
T Consensus 251 ~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (317)
T 4dj3_A 251 YVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLL 314 (317)
T ss_dssp EEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHhc
Confidence 99999999999987 466667777776 4 45566777778888877776654
No 153
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=6.9e-08 Score=90.24 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=78.2
Q ss_pred hhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCC
Q 001215 744 VGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ 823 (1122)
Q Consensus 744 ~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 823 (1122)
..+++++++ +|+++|.+|+|+++|+++++++|+++++++|+++. ++++.. .. ....+..++..+
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~-~~~~~~---------~~---~~~~~~~~~~~~ 73 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLS-QLIQHA---------SL---DLALLTQPLQSG 73 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHH-HHCSEE---------EC---CTHHHHHHHHHC
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHH-HHhCcc---------ch---hhHHHHHHHHcC
Confidence 357888888 89999999999999999999999999999998763 233210 00 012233344333
Q ss_pred C-cceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 824 D-ADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 824 ~-~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
. ....++.+. ++|+.+|+.++..|+.+ +|. .|++.+++||+
T Consensus 74 ~~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 74 QSITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred CcccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 3 344566666 78999999999999999 776 68999999985
No 154
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.60 E-value=3.5e-07 Score=80.57 Aligned_cols=95 Identities=23% Similarity=0.364 Sum_probs=71.1
Q ss_pred cCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCCCe
Q 001215 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETSGP 699 (1122)
Q Consensus 620 a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~~ 699 (1122)
++++|+++|.+|+|+++|+++++++|++.++++|+++.++ +.... ....+...+..+... ++... ++..
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~--~~~~~------~~~~ 69 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFEE-IGSVAESVFENKEPV--FLNFY------KFGE 69 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCHH-HHHHHHHHHHHTCCE--EEEEE------EETT
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchHH-HHHHHHHHhccCCeE--EEEEE------cCCc
Confidence 4789999999999999999999999999999999999887 33333 333344444433322 22221 3556
Q ss_pred EEEEEEEEEecCCCCC-EEEEEEEEEc
Q 001215 700 VILVVNACCTQDTKEN-VIGVCFVGQD 725 (1122)
Q Consensus 700 ~~v~v~~~pi~d~~G~-v~gvv~v~~D 725 (1122)
+|+.++..|+++.+|. +.|++++++|
T Consensus 70 ~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 70 RYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 7999999999998665 6799999887
No 155
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.59 E-value=3.9e-07 Score=104.66 Aligned_cols=205 Identities=9% Similarity=0.014 Sum_probs=127.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHH
Q 001215 199 KLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (1122)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l 278 (1122)
+.+.++...| + +.|++++++.+++.+++++|+||+.||-+++++. +.++.+.... ...-+.++|...= -....
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g~-~~~~~~~~~~~~g--~~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGDK-VLGEEVSFPLTMG--RLGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETTE-EEEEEEEEESSSS--SHHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCCC-ccccceeeccccC--HHHHH
Confidence 3445566666 4 6699999999999999999999999999998864 5555544321 1122334443321 13456
Q ss_pred HHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCcee
Q 001215 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358 (1122)
Q Consensus 279 ~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lW 358 (1122)
+..++.-.|.|+...| | ++......+++++.|++||+.+ .+|++|
T Consensus 87 ~~~~~~~~i~d~~~~~--------------------~----~~~~~~~~~~~~s~l~vPl~~~-----------~~~~~~ 131 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDD--------------------V----QQLQNMLGCELQAMLCVPVISR-----------ATDQVV 131 (368)
T ss_dssp HHHCCCEEGGGSCHHH--------------------H----HHHHHHHCSCCCCEEEEEEECT-----------TTCSEE
T ss_pred HhcCCeEEeccccccc--------------------c----cccccccCcccceEEEEEeecC-----------CCCcEE
Confidence 7777777777743221 1 4456677889999999999864 127999
Q ss_pred eEEEeecCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc-CCCccccc-CCcchhhh
Q 001215 359 GLVVCHHTSP-RFVPFPLRYACEFLIQVFGVQVNKEVELSAQ-LREKHILRTQTVLCDMLLR-DSPVGIVT-QTPNVMDL 434 (1122)
Q Consensus 359 Gl~~~h~~~p-r~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~l 434 (1122)
|.|.++++.+ +.++......++.++..++..|......+.. ..++...........+... .....+.. -...+..+
T Consensus 132 Gvl~l~~~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~ 211 (368)
T 1mc0_A 132 ALACAFNKLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNL 211 (368)
T ss_dssp EEEEEEEESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 9999888764 5688888888999999888887543222211 1111111122122122211 12211111 12456778
Q ss_pred ccCCeEEEEEC
Q 001215 435 VKCDGAALYYR 445 (1122)
Q Consensus 435 ~~~~g~al~~~ 445 (1122)
++|+.++|+.-
T Consensus 212 ~~~~~~~i~l~ 222 (368)
T 1mc0_A 212 SNAEICSVFLL 222 (368)
T ss_dssp HTEEEEEEEEE
T ss_pred hcccEEEEEEE
Confidence 88998777653
No 156
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.57 E-value=4.1e-08 Score=91.95 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=70.0
Q ss_pred CeEEecCC-CCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCC-Cc---ceeEE
Q 001215 756 PIFMTDED-GRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ-DA---DKILF 830 (1122)
Q Consensus 756 ~I~~~D~d-g~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~-~~---~~~e~ 830 (1122)
+|+++|.+ |+|+++|+++++++||+++|++|+++. +++ +++..............+. .. ...++
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~-~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLT-QFF----------LRSDSDVVEALSEEHMEADGHAAVVFGTVV 78 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGG-GGS----------SCTTTHHHHHTTSSTTSSSSCSSCCCSSSE
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHH-Hhc----------CcchhHHHHHHHHHhhccCCcceeccCcEE
Confidence 89999999 999999999999999999999999863 222 2222221111111111211 11 14467
Q ss_pred EEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 831 GFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 831 ~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
.+.++||+.+|+.++.+|+.+.++. +++++++|++
T Consensus 79 ~~~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 79 DIISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp EECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEEecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 7889999999999999999876553 5788888875
No 157
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.54 E-value=3e-07 Score=91.04 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCC-ccCCCCCCCCccHHHHHHHHhCCeEEeecCC
Q 001215 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEP-YLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (1122)
Q Consensus 213 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~-~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~ 291 (1122)
|.|++++++.+++.+.+++|+|++.||-+++++.-.+++- .++++ +... ..... | ....+..++.-+|.|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~---~g~~~~~~~~-~~~~~-~--~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAA---RGLSEHYQRA-VDGHS-P--WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEE---ESCCHHHHHH-TCBCC-S--CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEee---CCCCHHHHhh-ccCCC-c--hhhhhhcCCcEEEeChh
Confidence 3589999999999999999999999999999873223221 11110 0000 00000 0 01111222222333311
Q ss_pred CCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCC
Q 001215 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (1122)
Q Consensus 292 ~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~ 371 (1122)
.. .-.+.+.+.+...|+++.+++||+.+ |+++|.|..++..|+.+
T Consensus 74 ~~----------------------~~~~~~~~~~~~~g~~s~~~vPl~~~-------------~~~iGvl~~~~~~~~~f 118 (151)
T 3hcy_A 74 DA----------------------EFSRELKESIVGEGIAALGFFPLVTE-------------GRLIGKFMTYYDRPHRF 118 (151)
T ss_dssp GS----------------------CCCHHHHHHHHHHTCCEEEEEEEESS-------------SSEEEEEEEEESSCCCC
T ss_pred hC----------------------cccchhHHHHHhcCchheEEeceEEC-------------CEEEEEEEEecCCCCCC
Confidence 11 11246677889999999999999977 99999999998889999
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q 001215 372 PFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+...+...+.++..++..|..
T Consensus 119 ~~~~~~ll~~~a~~~a~ai~~ 139 (151)
T 3hcy_A 119 ADSEIGMALTIARQLGFSIQR 139 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888887754
No 158
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.54 E-value=1.4e-06 Score=88.34 Aligned_cols=138 Identities=10% Similarity=0.073 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCc--cCCCCCCCCccHHHHHHHHhCCeEEeecCC
Q 001215 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPY--LGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (1122)
Q Consensus 214 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~--lg~~~pa~dip~~~r~l~~~~~~r~i~d~~ 291 (1122)
.+++++++.++++++++++||++-+|-+++ |+.+.++..+.-... .|..+|..+= -....+..++.-++ |+.
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~---~~L~l~a~~~~~~~~~~~~~~ip~~~s--~~~~v~~~~~~~v~-~~~ 77 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLAN---ETLKLSHVYPKGSHSLDIGSTIPKEQS--LYWSALDQRQTIFR-SLT 77 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEET---TEEEEEEEESTTCCSSCTTCEECSTTC--HHHHHHHHTSCEEE-ESC
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEEC---CEEEEEEEecCCccccccccccCCccC--HHHHHHHhCCeEEE-cCc
Confidence 489999999999999999999999999975 344555443333222 4566665332 23344555655443 422
Q ss_pred CCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCC
Q 001215 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (1122)
Q Consensus 292 ~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~ 371 (1122)
..+-+ .++..|+...|+++.|++||+.+ |++||.|...+..|+.+
T Consensus 78 ~~~~~----------------------~~~~~~~~~~~~~S~l~vPL~~~-------------~~~iGvl~l~~~~~~~f 122 (165)
T 3o5y_A 78 DTQDN----------------------FYEKQYLAILDLKSILVIPIYSK-------------NKRVGVLSIGRKQQIDW 122 (165)
T ss_dssp CTTCC----------------------CTTHHHHHTTTCCEEEEEEEECS-------------SCEEEEEEEEESSCCCC
T ss_pred ccccc----------------------cccchHHHhhCCCEEEEeCeeEC-------------CEEEEEEEEEeCCCCCC
Confidence 22111 13447899999999999999988 99999999998889989
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q 001215 372 PFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+.+.....+.|+..+++.|..
T Consensus 123 ~~~d~~~l~~la~~~aiai~n 143 (165)
T 3o5y_A 123 SLDDLAFLEQLTDHLAVSIEN 143 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999888889888888887754
No 159
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.50 E-value=3.3e-07 Score=103.74 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=88.9
Q ss_pred CccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcc-----eeEEEEEEEeCCCC
Q 001215 621 AVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEE-----RNVEIKLRAFGPRE 695 (1122)
Q Consensus 621 ~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~-----~~~e~~l~~~~~~~ 695 (1122)
.+.++..|.+|+++|+|+++..++||+++|++|+++.+++||+|.+.+.+.+..+++.+.. ...+++++ ++
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~----~k 229 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFL----IQ 229 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEE----CT
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEE----cc
Confidence 4577889999999999999999999999999999999999999999999888888864442 23455555 78
Q ss_pred CCCeEEEEEEEEEecCCC-CCEEEEEEEEEcchhh
Q 001215 696 TSGPVILVVNACCTQDTK-ENVIGVCFVGQDITGQ 729 (1122)
Q Consensus 696 dG~~~~v~v~~~pi~d~~-G~v~gvv~v~~DITer 729 (1122)
||.++|+..+..+++|.. +++..++++-+.|++.
T Consensus 230 dG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 230 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp TSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 999999999999999875 5677888887777753
No 160
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.45 E-value=8.2e-08 Score=89.29 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=78.6
Q ss_pred HHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCC---ChHHHhhhhccccccccccccccccCcchH
Q 001215 733 MDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGL---KREEAIERMLIGEVFTVKNFGCRVKNHDTL 809 (1122)
Q Consensus 733 E~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~---~~eeliGk~l~~~i~~~~~~~~~l~~~d~~ 809 (1122)
.+++++.+..++.+++++++ +|+++|.+|+|+++|+++++++|+ ++++++|+.+. +++ ++..
T Consensus 7 ~~~l~~~~~~~~~il~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~-~~~----------~~~~- 71 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKE---GVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSH-SWS----------QVVD- 71 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCC---CCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTC-CCS----------CTHH-
T ss_pred HHHHHHHHHHHHHHHhhccc---cEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcc-ccc----------Cchh-
Confidence 45567777888999999999 899999999999999999999997 78899988753 121 1211
Q ss_pred HHHHHHHHHHhcCCCcc-eeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 810 TKLRIVMNKVISGQDAD-KILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 810 ~~~~~~l~~~l~g~~~~-~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
+...+.++... ...+ ..+| .|+.++..|+.+ +|...|++++++|||
T Consensus 72 ------~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 72 ------VSEVLRDGTPRRDEEI---TIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp ------HHHHHHTTCCCCCCCE---ESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ------HHHHhccCceeccEEE---EECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 22333333322 2221 2356 466778888887 888889999999998
No 161
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.44 E-value=5.8e-07 Score=85.77 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccC-CchHHHHHHHHHHHcCCcceeEEEEEEEeC
Q 001215 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAG-DSVDVVKNMLSSAFLGIEERNVEIKLRAFG 692 (1122)
Q Consensus 614 ~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~-~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~ 692 (1122)
..+++++++|++.+|.+|+|++||..+++++|+++++++|+++++.+.| .....+...+.+.+..+. ...++....
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v~-- 96 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYTF-- 96 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEEE--
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE--
Confidence 4579999999999999999999999999999999999999999875443 444445555555554333 222333332
Q ss_pred CCCCCCeEEEEEEEEEecCCCCCEEEEEE
Q 001215 693 PRETSGPVILVVNACCTQDTKENVIGVCF 721 (1122)
Q Consensus 693 ~~~dG~~~~v~v~~~pi~d~~G~v~gvv~ 721 (1122)
+++|.++.+.+ ...++++|...+++.
T Consensus 97 -~~~~~p~~v~i--~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 97 -DYQMTPTKVKV--HMKKALSGDSYWVFV 122 (125)
T ss_dssp -CTTSCCEEEEE--EEEECSSSSEEEEEE
T ss_pred -cCCCCEEEEEE--EEEEcCCCCEEEEEE
Confidence 45777555555 456677887776653
No 162
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.42 E-value=4.6e-07 Score=86.64 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHhcCccEEEecCCCcEEeccHHHHHHcCCCchhhcCCccccccc-CCchHHHHHHHHHHHcCCcceeEEEEEEEeCC
Q 001215 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVA-GDSVDVVKNMLSSAFLGIEERNVEIKLRAFGP 693 (1122)
Q Consensus 615 ~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~-~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~ 693 (1122)
.+++++++||+++|.+|+|++||..++++.|+++++++|+++++.+. ......+...+.+.+..+. ...++....
T Consensus 26 ~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~--- 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVF--- 101 (129)
T ss_dssp TTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEE---
T ss_pred HHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE---
Confidence 46999999999999999999999999999999999999999987544 3444455555555555444 222333331
Q ss_pred CCCCCeEEEEEEEEEecCCCCCEEEEEE
Q 001215 694 RETSGPVILVVNACCTQDTKENVIGVCF 721 (1122)
Q Consensus 694 ~~dG~~~~v~v~~~pi~d~~G~v~gvv~ 721 (1122)
++++.++. ++....++.+|...+++.
T Consensus 102 ~~~~~p~~--v~i~l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 102 DFQMAPVR--VQIRMQNAGVPDRYWIFV 127 (129)
T ss_dssp ECSSCEEE--EEEEEEECSSTTEEEEEE
T ss_pred cCCCCEEE--EEEEEEEcCCCCEEEEEE
Confidence 34677555 455556677888776653
No 163
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.42 E-value=3.6e-06 Score=96.51 Aligned_cols=148 Identities=13% Similarity=0.167 Sum_probs=108.7
Q ss_pred HHHHHhhcCCC-CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCC--CCccCCCCCCCCccHHHHHHH
Q 001215 203 KAISRLQSLPS-GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDL--EPYLGFHYPATDIPQASRFLI 279 (1122)
Q Consensus 203 ~~~~~~~~~~~-~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~--~~~lg~~~pa~dip~~~r~l~ 279 (1122)
.+...|.+ + .+++++++.+++.+++++|+||+.||.+++ |+.+..+...++ ....+..+|... .-+...+
T Consensus 185 ~i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 257 (368)
T 1mc0_A 185 QVAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVA 257 (368)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHHH
T ss_pred HHHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeeeh
Confidence 33444555 3 489999999999999999999999999988 566666554322 344566666542 3456678
Q ss_pred HhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEE-eCCcccccccccccCcee
Q 001215 280 MKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDNDQEQGRKLW 358 (1122)
Q Consensus 280 ~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~-~~~~~~~~~~~~~~~~lW 358 (1122)
..++.-.|+|+...|--. ++......+.+++.|++||+. + |++|
T Consensus 258 ~~~~~~~i~d~~~~~~~~----------------------~~~~~~~~~~~~s~l~vPl~~~~-------------~~~i 302 (368)
T 1mc0_A 258 TTGQILNIPDAYAHPLFY----------------------RGVDDSTGFRTRNILCFPIKNEN-------------QEVI 302 (368)
T ss_dssp HHCCCEEESCSTTCTTCC----------------------CTTHHHHTCCCCCEEEEEEECTT-------------SCEE
T ss_pred hhCCEEEecCcccCcccc----------------------hhhhhccCCccceEEEEeeECCC-------------CcEE
Confidence 888888888865432110 122223445569999999987 5 8999
Q ss_pred eEEEeecCCCC-CCChhhHHHHHHHHHHHHHHHHH
Q 001215 359 GLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 359 Gl~~~h~~~pr-~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|.|..+++.++ .++...+..++.++..+++.|..
T Consensus 303 Gvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 303 GVAELVNKINGPWFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp EEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 79999999999999988888754
No 164
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.76 E-value=3.5e-08 Score=110.54 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=86.2
Q ss_pred HHHhcCccEEEecCCCcEEeccHHHHHHcC---CCchhhcCCcccccccCC---ch--HHHHHHHHHHHcC-CcceeEEE
Q 001215 616 LIETAAVPILAVDASGNVNGWNSKAAELTG---LTVDQAIGTALVDLVAGD---SV--DVVKNMLSSAFLG-IEERNVEI 686 (1122)
Q Consensus 616 lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G---~s~eeliG~~~~dl~~~~---~~--~~~~~~l~~~l~g-~~~~~~e~ 686 (1122)
+++++++||+++|.+|+|+++|++++++|| ++ ++++|+++.+++... .. ..+...+..++.+ +.....+
T Consensus 175 ~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~e- 252 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRME- 252 (305)
Confidence 346899999999999999999999999985 44 788999999888643 11 1223333334444 3222111
Q ss_pred EEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhh
Q 001215 687 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVG 745 (1122)
Q Consensus 687 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~ 745 (1122)
+. ....++.++..|+++ +|++.|++.+++|||+.++.|++|+......+.
T Consensus 253 -i~-------~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~IrE 302 (305)
T 2ykf_A 253 -VD-------AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIRE 302 (305)
Confidence 11 123677888899987 588899999999999999999999776655443
No 165
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.36 E-value=6.2e-07 Score=103.31 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=84.4
Q ss_pred hhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHH
Q 001215 740 QGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKV 819 (1122)
Q Consensus 740 e~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~ 819 (1122)
..+++++++++++ ||+++|.+|+|++||++ ++++ ++.++++|+++. ++ .++.... ....+...
T Consensus 238 ~~~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~-~~----------~p~~~~~-~~~~l~~~ 300 (369)
T 3cax_A 238 IEELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQ-LC----------HPPKSVY-VVNKILKA 300 (369)
T ss_dssp HHHHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTT-TS----------SCGGGHH-HHHHHHHH
T ss_pred HHHHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHH-HH----------CChhhHH-HHHHHHHH
Confidence 3457789999998 99999999999999999 9999 899999999853 22 2222222 22333334
Q ss_pred hcCCCcceeEEEEEccCCCEEEEEEEEeeeeCCCCCEEEEEEeeecccHHHHHHH
Q 001215 820 ISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYAL 874 (1122)
Q Consensus 820 l~g~~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DITerkq~e~ 874 (1122)
+..+.....++.+. .+| +++.++..|++|.+|++.|++.+++|||+.++.+.
T Consensus 301 l~~g~~~~~~~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 301 FKEGRKKEATFWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp HHHTSCSCEEEEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred HHcCCceEEEEEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHH
Confidence 44444444444443 456 57788999999999999999999999998776543
No 166
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.36 E-value=7.1e-07 Score=103.95 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-CCCCeEEEEEEec-ccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCCCCCCcc
Q 001215 999 DKLRLQQVLSDFLTNALIFTPA-FEGSSIAFRVIPQ-KERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREG 1076 (1122)
Q Consensus 999 D~~~L~QVL~NLL~NAik~t~~-~~g~~I~I~v~~~-~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~~~~GtG 1076 (1122)
+...+..++.||++||++|+.+ ..++.|.|++... ++ .+.|+|.|+|+|+|+. ....+.|
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~---------~l~i~V~D~G~g~~~~---------~~~~~~G 355 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG---------NVRASVIDRGQWKDHR---------DGARGRG 355 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS---------EEEEEEEESCBC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC---------EEEEEEEECCCCCCCC---------CCCCCCC
Confidence 3567899999999999999842 1356999998876 34 7999999999999875 2335679
Q ss_pred chHHHHHHHHHHcCcEEEEEecCCceEEEEEEEecC
Q 001215 1077 LGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPL 1112 (1122)
Q Consensus 1077 LGL~I~r~ive~~gG~I~v~s~~gg~tF~~~l~LP~ 1112 (1122)
+||+|++.+++ .+.+.+.++|.++++.+++|.
T Consensus 356 ~GL~lv~~l~~----~~~~~~~~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 356 RGLAMAEALVS----EARIMHGAGGTTATLTHRLSR 387 (399)
T ss_dssp -CHHHHHTTSS----EEEEEEETTEEEEEEEEECEE
T ss_pred cHHHHHHHHHH----heeeEECCCcEEEEEEEEcCC
Confidence 99999988776 455777777777777776654
No 167
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.34 E-value=2e-06 Score=82.26 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=70.9
Q ss_pred hhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCC
Q 001215 744 VGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ 823 (1122)
Q Consensus 744 ~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 823 (1122)
..++++++. ||+++|.+|+|++||.++++++|+++++++|+.++..+.+. .....+...+.+.+..+
T Consensus 25 ~~~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~----------~~~~~f~grf~~~~~~G 91 (129)
T 1mzu_A 25 TAEFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC----------TNIPAFSGRFMDGVTSG 91 (129)
T ss_dssp CTTGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG----------GCSTTTHHHHHHHHHTS
T ss_pred HHHHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch----------hcccHHHHHHHHHHhcC
Confidence 446888887 99999999999999999999999999999999986544332 12222334444554433
Q ss_pred CcceeEEEE-EccCCCEEEEEEEEeeeeCCCCCEEEEE
Q 001215 824 DADKILFGF-FDQQGKYVEALLSANKRTNAEGKISGIL 860 (1122)
Q Consensus 824 ~~~~~e~~~-~~~dG~~~~v~~~~~pv~d~~G~i~gvv 860 (1122)
. ....+.+ ++.+|+ ++.++.....+.+|...+++
T Consensus 92 ~-l~~~~~yv~~~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 92 T-LDARFDFVFDFQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp C-CEEEEEEEEECSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred c-eeEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 3 4444443 488898 45555566677888877654
No 168
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.31 E-value=2.2e-06 Score=81.71 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=70.6
Q ss_pred hhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCC
Q 001215 744 VGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ 823 (1122)
Q Consensus 744 ~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 823 (1122)
..++++++. |++++|.+|+|++||+++++++|+++++++|+.++..+.+. .....+...+.+.+..+
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~----------~~~~~f~~rf~~~~~~g 86 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC----------TDSPEFYGKFKEGVASG 86 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG----------GCSTTTHHHHHHHHHHT
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch----------hcccHHHHHHHHHHhcC
Confidence 446888887 99999999999999999999999999999999986544332 11222333444444433
Q ss_pred CcceeEEEE-EccCCCEEEEEEEEeeeeCCCCCEEEEE
Q 001215 824 DADKILFGF-FDQQGKYVEALLSANKRTNAEGKISGIL 860 (1122)
Q Consensus 824 ~~~~~e~~~-~~~dG~~~~v~~~~~pv~d~~G~i~gvv 860 (1122)
. ....+.+ ++.+|+ ++.++.....+.+|...+++
T Consensus 87 ~-l~~~~~~v~~~~~~--p~~v~i~l~~~~~~~~~~i~ 121 (125)
T 1nwz_A 87 N-LNTMFEYTFDYQMT--PTKVKVHMKKALSGDSYWVF 121 (125)
T ss_dssp C-CEEEEEEEECTTSC--CEEEEEEEEECSSSSEEEEE
T ss_pred c-eeEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 3 4444443 488999 45555666677888877654
No 169
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.29 E-value=3.2e-06 Score=94.36 Aligned_cols=102 Identities=9% Similarity=0.015 Sum_probs=85.7
Q ss_pred cEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcc-ee-EEEEEEEeCCCCCCCeE
Q 001215 623 PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEE-RN-VEIKLRAFGPRETSGPV 700 (1122)
Q Consensus 623 gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~-~~-~e~~l~~~~~~~dG~~~ 700 (1122)
.+...+.+|+++|+|+++..++||.++|++|+++.+++||+|.+.+.+.+..+++++.. .. .+++++ ++||.++
T Consensus 167 Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~----~kdG~~v 242 (309)
T 3gdi_A 167 FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFR----TRNGEYI 242 (309)
T ss_dssp EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEE----CTTSCEE
T ss_pred EEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEE----ccCCCEE
Confidence 46678899999999999999999999999999999999999999999999998875432 32 244444 7899999
Q ss_pred EEEEEEEEecCC-CCCEEEEEEEEEcchh
Q 001215 701 ILVVNACCTQDT-KENVIGVCFVGQDITG 728 (1122)
Q Consensus 701 ~v~v~~~pi~d~-~G~v~gvv~v~~DITe 728 (1122)
|+..+..++++. ++++..++++-+-++.
T Consensus 243 wvet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 243 TLDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 999999999886 5777788888666654
No 170
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.29 E-value=2.5e-06 Score=95.76 Aligned_cols=103 Identities=11% Similarity=0.010 Sum_probs=86.4
Q ss_pred ccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCC-cce-eEEEEEEEeCCCCCCCe
Q 001215 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGI-EER-NVEIKLRAFGPRETSGP 699 (1122)
Q Consensus 622 ~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~-~~~-~~e~~l~~~~~~~dG~~ 699 (1122)
..+...+.+|+++|+|+++..++||.++|++|+++.+++||+|.+.+.+.+..+++++ ... ..+++++ ++||.+
T Consensus 177 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~----~kdG~~ 252 (320)
T 4dj2_A 177 IFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFC----ARNGEY 252 (320)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEE----CSSSCE
T ss_pred eEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEE----ccCCCE
Confidence 3567788999999999999999999999999999999999999999999999998843 333 2355554 789999
Q ss_pred EEEEEEEEEecCC-CCCEEEEEEEEEcchh
Q 001215 700 VILVVNACCTQDT-KENVIGVCFVGQDITG 728 (1122)
Q Consensus 700 ~~v~v~~~pi~d~-~G~v~gvv~v~~DITe 728 (1122)
+|+..+..+++|. ++++..++++-+-|++
T Consensus 253 vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 253 VTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp EEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred EEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 9999999999886 5777788888665554
No 171
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.26 E-value=3.4e-06 Score=74.05 Aligned_cols=93 Identities=24% Similarity=0.376 Sum_probs=65.1
Q ss_pred CCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHHHhcCCCcceeEEEEEc
Q 001215 755 PPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFD 834 (1122)
Q Consensus 755 ~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~ 834 (1122)
.+|+++|.+|+++++|+++++++|++.++++|+.+.. + ++. ..+...+...+..+... ++...
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~-----------~--~~~-~~~~~~~~~~~~~~~~~--~~~~~- 65 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD-----------L--PDF-EEIGSVAESVFENKEPV--FLNFY- 65 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG-----------S--TTC-HHHHHHHHHHHHHTCCE--EEEEE-
T ss_pred ceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHH-----------C--cch-HHHHHHHHHHhccCCeE--EEEEE-
Confidence 3899999999999999999999999999999987531 1 111 12223334444433332 23322
Q ss_pred cCCCEEEEEEEEeeeeCCCCC-EEEEEEeeec
Q 001215 835 QQGKYVEALLSANKRTNAEGK-ISGILCFLHV 865 (1122)
Q Consensus 835 ~dG~~~~v~~~~~pv~d~~G~-i~gvv~~l~D 865 (1122)
+|..+|+.++..|+.+.+|. +.|++++++|
T Consensus 66 -~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 66 -KFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp -EETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred -cCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 34456888999999988665 6789998887
No 172
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.26 E-value=2.6e-06 Score=83.63 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccC-CCCCCCCccHHHHHHHHhCCeEEeecCC
Q 001215 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLG-FHYPATDIPQASRFLIMKNKVRMICDCL 291 (1122)
Q Consensus 213 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg-~~~pa~dip~~~r~l~~~~~~r~i~d~~ 291 (1122)
+.+++++++.+++.+++++++|++.||-+++++.-.+++-.- .+-+.+-. .++|..+ .-....+..++.-+|.|+.
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEG-IDEETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEES-CCHHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEec-CCHHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 348999999999999999999999999999664433333221 11111111 2444322 2345567777777787743
Q ss_pred CCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCC-CC
Q 001215 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSP-RF 370 (1122)
Q Consensus 292 ~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~p-r~ 370 (1122)
..|--. . .+. ...++++.+++||+.+ |+++|.|.+++..+ +.
T Consensus 81 ~~~~~~------------------~-~~~-----~~~~~~s~l~vPl~~~-------------~~~~Gvl~l~~~~~~~~ 123 (153)
T 2w3g_A 81 AHPASI------------------G-FPP-----YHPPMRTFLGVPVRVR-------------DESFGTLYLTDKTNGQP 123 (153)
T ss_dssp GSTTCC------------------C-CCT-----TCCCCCCEEEEEEEET-------------TEEEEEEEEEEETTSCC
T ss_pred cCchhc------------------C-CCC-----cCCCCCeEEEeeEEEC-------------CEEEEEEEEeeCCCCCC
Confidence 322110 0 000 3468899999999988 99999999999888 79
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q 001215 371 VPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
++...+..++.++..++..|..
T Consensus 124 f~~~~~~~l~~la~~~a~ai~~ 145 (153)
T 2w3g_A 124 FSDDDEVLVQALAAAAGIAVAN 145 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888754
No 173
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.25 E-value=1.1e-05 Score=83.34 Aligned_cols=139 Identities=8% Similarity=0.071 Sum_probs=88.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeeeEEeehHHHHHHH
Q 001215 889 NKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDTDIESIEECYMVLKSGEFNLGEALDAV 968 (1122)
Q Consensus 889 ~fLa~isHELrnPLt~I~g~~~lL~~~~l~~~~~~~L~~i~~~~~rl~~iI~dLd~srie~g~~~l~~~~~dL~~vi~~v 968 (1122)
..+...+||+.|-|..|.|++++-+ -++..+|+..+....+.... +.++. ...+..+
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~------~~~i~-------------~P~la~l 79 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESK------LSNLK-------------TPHLAFD 79 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHH------HHTTT-------------CHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHH------HHhCC-------------CHHHHHH
Confidence 4467789999999999999999743 45677777777665554443 22221 1345666
Q ss_pred HHHhccccccCCcEE-EeecCCCCcceEEEecHHHHHHHHHHHHHHHhhcC----CCCCCCeEEEEEEec--ccccCccc
Q 001215 969 MTQVMIPSREHQVQF-IRDLPAEVSTMNLHGDKLRLQQVLSDFLTNALIFT----PAFEGSSIAFRVIPQ--KERIGKNI 1041 (1122)
Q Consensus 969 ~~~~~~~~~~~~i~l-~~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t----~~~~g~~I~I~v~~~--~~~~~~~~ 1041 (1122)
+-.....+++.++.+ .++.+..++. .+..+ .||+.||..+. .+...+.|.|++... ++
T Consensus 80 Ll~K~~~a~e~~i~lev~~~~s~l~~-----~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~------ 144 (192)
T 1ixm_A 80 FLTFNWKTHYMTLEYEVLGEIKDLSA-----YDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDR------ 144 (192)
T ss_dssp HHHGGGSCCSSEEEEEEESSCCCCTT-----THHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSS------
T ss_pred HHHHHHHhccCCeEEEEecCccccCC-----CcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCC------
Confidence 666666676667777 5565555532 23333 45554444332 212355899988776 55
Q ss_pred eeEEEEEEEEcCCCCCChhhhhhhcCC
Q 001215 1042 HIVHLEFRITHPAPGIPEKLIHDMFYH 1068 (1122)
Q Consensus 1042 ~~~~v~~~V~D~G~GI~~e~~~~iF~~ 1068 (1122)
.+.|.|.|+|++|+++.++++|++
T Consensus 145 ---~l~i~V~d~G~~i~~e~~~~if~~ 168 (192)
T 1ixm_A 145 ---QLILYLDFHGAFADPSAFDDIRQN 168 (192)
T ss_dssp ---SCEEEEEEESCBSCGGGCC-----
T ss_pred ---EEEEEEEeCCCCCCHHHHHHHHhC
Confidence 689999999999999999999985
No 174
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.16 E-value=3e-05 Score=77.02 Aligned_cols=128 Identities=15% Similarity=0.043 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEeecCCCC---ceEEEEe-cCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecC
Q 001215 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH---GEVVAEC-RRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDC 290 (1122)
Q Consensus 215 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~---g~vvaE~-~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~ 290 (1122)
+++++++.+++.+++++|+|+..||-.+++.. |+...++ .....+.+.|..||-.. + -....+..++.-+|+|+
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 46789999999999999999999999987641 4444433 34444567788887543 2 34456677777778775
Q ss_pred CCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecC-CCC
Q 001215 291 LAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHT-SPR 369 (1122)
Q Consensus 291 ~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~-~pr 369 (1122)
...| |+++-|++||..+ ++.-|.|..++. .|+
T Consensus 79 ~~d~----------------------------------~~~s~l~vPL~~~-------------~~~~GvL~l~~~~~~~ 111 (149)
T 2vjw_A 79 DGPG----------------------------------LGGPALVLPLRAT-------------DTVAGVLVAVQGSGAR 111 (149)
T ss_dssp CTTS----------------------------------CEEEEEEEEEEET-------------TEEEEEEEEEEETTCC
T ss_pred ccCC----------------------------------CCCeEEEEEEccC-------------CeEEEEEEEeeCCCCC
Confidence 4221 6899999999987 999999999887 788
Q ss_pred CCChhhHHHHHHHHHHHHHHHH
Q 001215 370 FVPFPLRYACEFLIQVFGVQVN 391 (1122)
Q Consensus 370 ~~~~~~r~~~~~l~~~~~~~~~ 391 (1122)
.++......++.|+...++.|.
T Consensus 112 ~f~~~d~~ll~~lA~~aa~al~ 133 (149)
T 2vjw_A 112 PFTAEQLEMMTGFADQAAVAWQ 133 (149)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877777664
No 175
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.15 E-value=1.4e-06 Score=89.79 Aligned_cols=106 Identities=10% Similarity=0.095 Sum_probs=75.0
Q ss_pred HhhhhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCChHHHhhhhccccccccccccccccCcchHHHHHHHHHH
Q 001215 739 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 818 (1122)
Q Consensus 739 se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~~eeliGk~l~~~i~~~~~~~~~l~~~d~~~~~~~~l~~ 818 (1122)
....++.++++.++ ||+++|.+|+|+++|+++++++|++.++++|+++. ++++ +.... .
T Consensus 78 ~~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~-~~~~----------~~~~~-------~ 136 (190)
T 2jhe_A 78 EHLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLIN----------GFNFL-------R 136 (190)
T ss_dssp HHHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGG-GTST----------TCCHH-------H
T ss_pred HHHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHH-HHhC----------CCCHH-------H
Confidence 34567889999998 89999999999999999999999999999998753 2222 11211 1
Q ss_pred Hhc-CC-CcceeEEEEEccCCCEEEEEEEEeeeeCCCCC----EEEEEEeeecccHHH
Q 001215 819 VIS-GQ-DADKILFGFFDQQGKYVEALLSANKRTNAEGK----ISGILCFLHVASPEL 870 (1122)
Q Consensus 819 ~l~-g~-~~~~~e~~~~~~dG~~~~v~~~~~pv~d~~G~----i~gvv~~l~DITerk 870 (1122)
.+. +. .....++.+ +|+. +.++..|+.+.+|. +.|++++++|||+.+
T Consensus 137 ~~~~~~~~~~~~~~~~---~g~~--~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 137 WLESEPQDSHNEHVVI---NGQN--FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp HHHTCCCSCEEEEEEE---TTEE--EEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred HHhcCCCCCcceEEEE---CCeE--EEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 222 22 223333333 6754 56678898876666 788999999999753
No 176
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.13 E-value=3e-05 Score=89.96 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEee-cCCC
Q 001215 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMIC-DCLA 292 (1122)
Q Consensus 214 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~-d~~~ 292 (1122)
.+++++++.+++.+++++|+||+.||-+++++. +........+. +.-+.++|-. ..-+...+..++.-.|+ |+..
T Consensus 213 ~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~~~~-~~~~~~~~~~--~~~~~~v~~~~~~~~i~~d~~~ 288 (398)
T 1ykd_A 213 LDLEDTLKRVMDEAKELMNADRSTLWLIDRDRH-ELWTKITQDNG-STKELRVPIG--KGFAGIVAASGQKLNIPFDLYD 288 (398)
T ss_dssp CCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTT-EEEEEEECSSS-CEEEEEEETT--SHHHHHHHHHCCCEEECSCGGG
T ss_pred CCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCC-EEEEEEecCCC-ceeeeeccCC--CchhhHHhccCCeEEecccccc
Confidence 499999999999999999999999999999864 44444432211 2223344433 23455677888888888 7443
Q ss_pred CcceeecCCCCCCCCcccCccccCCChhH--HHHHHhcCceeEEEEEEE-EeCCcccccccccccCceeeEEEeecCC--
Q 001215 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCH--ARYMENMGSIASLVMSVT-INEAEDELDNDQEQGRKLWGLVVCHHTS-- 367 (1122)
Q Consensus 293 ~~~~~~~~~~~~~~ldl~~~~lr~~sp~h--~~yl~n~~v~a~l~~~i~-~~~~~~~~~~~~~~~~~lWGl~~~h~~~-- 367 (1122)
.|- ...+ ..-...+++++.|+|||+ .+ |++||.|..+++.
T Consensus 289 ~~~----------------------~~~~~~~~~~~~~~~~s~l~vPl~~~~-------------~~~iGvl~l~~~~~~ 333 (398)
T 1ykd_A 289 HPD----------------------SATAKQIDQQNGYRTCSLLCMPVFNGD-------------QELIGVTQLVNKKKT 333 (398)
T ss_dssp STT----------------------CHHHHHHHHHHTCCCCCEEEEEEECSS-------------SCEEEEEEEEEECCS
T ss_pred Ccc----------------------cCcccchhhhcCCeeeeEEEEeeecCC-------------CCEEEEEEEEecCCc
Confidence 211 1122 222346778999999999 47 9999999999887
Q ss_pred ------------------CCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 368 ------------------PRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 368 ------------------pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|+.++......++.++..+++.|..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~n 376 (398)
T 1ykd_A 334 GEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQN 376 (398)
T ss_dssp SCCCCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988888754
No 177
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=97.92 E-value=4.2e-05 Score=86.06 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--CC-------
Q 001215 1002 RLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--GA------- 1072 (1122)
Q Consensus 1002 ~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~~------- 1072 (1122)
++.+++.||+.||+++.. +.|.|.+.. ++ ...|+|.|||+|||++.++.+|++|. +.
T Consensus 28 ~~~~vv~eLv~NAidA~a----~~I~I~i~~-~~---------~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~ 93 (348)
T 3na3_A 28 RPANAIKEMIENCLDAKS----TSIQVIVKE-GG---------LKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLA 93 (348)
T ss_dssp SHHHHHHHHHHHHHHTTC----SEEEEEEEG-GG---------TSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC----
T ss_pred CHHHHHHHHHHHHHHcCC----CEEEEEEEe-CC---------EEEEEEEECCcCcChHHhhhhhccccccccCcchhhh
Confidence 577999999999999953 388888753 22 34699999999999999999999972 11
Q ss_pred -----CCccchHHHHHHHHHHcCcEEEEEecCC
Q 001215 1073 -----SREGLGLYISQKLVKLMNGTVQYIREAE 1100 (1122)
Q Consensus 1073 -----~GtGLGL~I~r~ive~~gG~I~v~s~~g 1100 (1122)
+-.|.||+-+..+ . ++.+.+...
T Consensus 94 ~i~s~GfrGeaL~Si~av----s-~l~v~sr~~ 121 (348)
T 3na3_A 94 SISTYGFRGEALASISHV----A-HVTITTKTA 121 (348)
T ss_dssp -----CCTTCHHHHHHHS----S-EEEEEEECT
T ss_pred ccccCCcCChHHHHhhcc----c-EEEEEEEEC
Confidence 1237788766333 2 566666544
No 178
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.91 E-value=2.3e-05 Score=88.50 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--C--------
Q 001215 1002 RLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--G-------- 1071 (1122)
Q Consensus 1002 ~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~-------- 1071 (1122)
++.+++.||+.||+++.. . .|.|.+...+ ...|+|.|||+||+++.+..+|++|. +
T Consensus 24 ~~~~~v~ELi~NaidA~a---~-~I~I~i~~~~----------~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~ 89 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA---T-RIDIDIERGG----------AKLIRIRDNGCGIKKDELALALARHATSKIASLDDLE 89 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC---S-EEEEEEEGGG----------TSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC---C-eEEEEEEeCC----------ceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhh
Confidence 578999999999999874 3 7888876422 24689999999999999999998862 1
Q ss_pred ----CCCccchHHHHHH
Q 001215 1072 ----ASREGLGLYISQK 1084 (1122)
Q Consensus 1072 ----~~GtGLGL~I~r~ 1084 (1122)
.++.|+||+.+..
T Consensus 90 ~~~~~G~~G~gl~si~~ 106 (333)
T 1b63_A 90 AIISLGFRGEALASISS 106 (333)
T ss_dssp TCCSSCCSSCHHHHHHT
T ss_pred hccccCccccchhhhhc
Confidence 2347999988744
No 179
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=97.90 E-value=2.4e-05 Score=89.24 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCCC--CC-------
Q 001215 1002 RLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQ--GA------- 1072 (1122)
Q Consensus 1002 ~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f~--~~------- 1072 (1122)
++.+++.||+.||+++.. + .|.|.+... + ...|+|.|||+||+++.+.++|++|. +.
T Consensus 34 ~~~~vl~eLv~NAiDA~a---~-~I~I~i~~~-~---------~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~ 99 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA---T-NIDLKLKDY-G---------VDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLT 99 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC---S-EEEEEEEGG-G---------TSEEEEEECSCCCCGGGSGGGGC----------CCTT
T ss_pred hHHHHHHHHHHHHHHCCC---C-EEEEEEEeC-C---------cEEEEEEECCCCcCHHHHHHHhhhccccccccccchh
Confidence 578999999999999864 3 788887542 2 24689999999999999999999972 11
Q ss_pred ----CCc-cchHHHHHHH
Q 001215 1073 ----SRE-GLGLYISQKL 1085 (1122)
Q Consensus 1073 ----~Gt-GLGL~I~r~i 1085 (1122)
.|. |+||+.+..+
T Consensus 100 ~i~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 100 QVETFGFRGEALSSLCAL 117 (365)
T ss_dssp CSEEESSSSSHHHHHHHH
T ss_pred cccccCCCCchhhhhhhh
Confidence 133 8899877543
No 180
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=97.90 E-value=9.6e-05 Score=92.37 Aligned_cols=141 Identities=12% Similarity=0.154 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCC--CCccCCCCCCCCccHHHHHHHHhCCeEEeecCC
Q 001215 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDL--EPYLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (1122)
Q Consensus 214 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~--~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~ 291 (1122)
.+++++++.+++++++++|+||+.||-+++ |+.+..+..... +...+..+|... .-+...+..++.-.|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 499999999999999999999999999988 778877765543 233455555432 3456678888888888855
Q ss_pred CCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCC-C
Q 001215 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR-F 370 (1122)
Q Consensus 292 ~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr-~ 370 (1122)
..|-- ++.......+++++-|++||+.+ +|++||.|..+++.+. .
T Consensus 270 ~d~~~----------------------~~~~~~~~g~~~rS~L~vPL~~~------------~g~viGVL~l~~~~~~~~ 315 (691)
T 3ibj_A 270 AHPLF----------------------YRGVDDSTGFRTRNILCFPIKNE------------NQEVIGVAELVNKINGPW 315 (691)
T ss_dssp TSTTC----------------------------CCSCCCCCEEEEECCCS------------SSCCCEEEEEEEESSSSS
T ss_pred cCccc----------------------cchhhcccCCeeeeEEEEeEECC------------CCCEEEEEEEEECCCCCC
Confidence 44210 12222233467899999999754 2699999999888765 7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH
Q 001215 371 VPFPLRYACEFLIQVFGVQVNKE 393 (1122)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~~~~~ 393 (1122)
++.......+.++..+|+.|...
T Consensus 316 f~~~d~~ll~~lA~~~aiAIena 338 (691)
T 3ibj_A 316 FSKFDEDLATAFSIYCGISIAHS 338 (691)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 181
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=97.88 E-value=0.00013 Score=74.75 Aligned_cols=155 Identities=10% Similarity=0.109 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHhhcCCCEEEEEeecCCCC-ceEEEEec--CCC--C-----CCccCCCC
Q 001215 198 YKLAAKAISRLQSLPSG-NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH-GEVVAECR--RPD--L-----EPYLGFHY 266 (1122)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~-g~vvaE~~--~~~--~-----~~~lg~~~ 266 (1122)
...+.++...|.+ +. +++++++.+++.+++++|+||..||=++++.. ++.++... ..+ + .+.-+.++
T Consensus 6 l~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 6 CNILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 3444556666666 67 99999999999999999999999999998754 56665432 122 2 23344556
Q ss_pred CCCCccHHHHHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCccc
Q 001215 267 PATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDE 346 (1122)
Q Consensus 267 pa~dip~~~r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~ 346 (1122)
|-. ---+...+..++.-+|+|+...|--. .........++++-|++||+.+
T Consensus 84 ~~~--~gi~g~v~~tg~~v~i~d~~~d~~f~----------------------~~~~~~~~~~~~S~L~vPl~~~----- 134 (180)
T 3dba_A 84 PLD--IGIAGWVAHTKKFFNIPDVKKNNHFS----------------------DYLDKKTGYTTVNMMAIPITQG----- 134 (180)
T ss_dssp CTT--SSHHHHHHHHTCCEEESCGGGCTTCC----------------------CHHHHHHCCCCCCEEEEEEEET-----
T ss_pred eCC--CCHHHHHHHhCCEEEecCCCCCcccC----------------------hhhccccCccccEEEEEEeccC-----
Confidence 543 13456677788888888854432100 1122234567899999999988
Q ss_pred ccccccccCceeeEEEeecCCCC-CCChhhHHHHHHHHHHHHHHHH
Q 001215 347 LDNDQEQGRKLWGLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQVN 391 (1122)
Q Consensus 347 ~~~~~~~~~~lWGl~~~h~~~pr-~~~~~~r~~~~~l~~~~~~~~~ 391 (1122)
+++.|.|...+..+. .++.......+.|+...++.|.
T Consensus 135 --------~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i~ 172 (180)
T 3dba_A 135 --------KEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVLR 172 (180)
T ss_dssp --------TEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred --------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999887654 7777777788888887777663
No 182
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=97.81 E-value=2.6e-06 Score=109.25 Aligned_cols=154 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCce--EEE---Eec-CCCCC--CccCCCCCCCCc
Q 001215 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGE--VVA---ECR-RPDLE--PYLGFHYPATDI 271 (1122)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~--vva---E~~-~~~~~--~~lg~~~pa~di 271 (1122)
.+..+...|.+ +.+++++++.+++.+++++|+||+.||.++++..|. .++ +.. ....+ +..+..||-..
T Consensus 154 ~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~- 230 (878)
T 3bjc_A 154 RLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK- 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc-
Confidence 34556666766 569999999999999999999999999999987643 332 111 11111 23445555321
Q ss_pred cHHHHHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEE-eCCccccccc
Q 001215 272 PQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDND 350 (1122)
Q Consensus 272 p~~~r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~-~~~~~~~~~~ 350 (1122)
.-+...+..++.-.|+|+...|-- +.........++++.|++||+. +
T Consensus 231 -gi~g~v~~~g~pv~I~D~~~dp~f----------------------~~~~~~~~~~~~~S~L~vPL~~~~--------- 278 (878)
T 3bjc_A 231 -GIVGHVAALGEPLNIKDAYEDPRF----------------------NAEVDQITGYKTQSILCMPIKNHR--------- 278 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cHHHHHHhcCceEEeCCcccCccc----------------------ccccccccCCccceEEEEeeEcCC---------
Confidence 123344555555566664332210 0122223456689999999998 6
Q ss_pred ccccCceeeEEEeecCCCC---CCChhhHHHHHHHHHHHHHHHHH
Q 001215 351 QEQGRKLWGLVVCHHTSPR---FVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 351 ~~~~~~lWGl~~~h~~~pr---~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|++||.|.++++.+. .++.+.....+.++..+++.|..
T Consensus 279 ----g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~n 319 (878)
T 3bjc_A 279 ----EEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHN 319 (878)
T ss_dssp ---------------------------------------------
T ss_pred ----CCEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 88888888899999988888754
No 183
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.80 E-value=0.00096 Score=67.36 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=102.3
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHH
Q 001215 197 SYKLAAKAISR-LQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQAS 275 (1122)
Q Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~ 275 (1122)
.|..+..-+++ +.. ..|+...++.+++.+.+.+++||+.+|-+++++.--++.-.... + -..+||-.. --+
T Consensus 14 ~~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~--~~~~i~~ge--Gi~ 85 (167)
T 3mmh_A 14 LYREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--L--ACTRIPFGR--GVC 85 (167)
T ss_dssp HHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--C--CCSEEETTS--HHH
T ss_pred HHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--c--cceEeccCC--ChH
Confidence 45444444444 455 56999999999999999999999999999987653343322211 1 122333221 234
Q ss_pred HHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccC
Q 001215 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (1122)
Q Consensus 276 r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~ 355 (1122)
-.-+..++.-+|+|+...|--+ +| ..++++-++|||+.+ |
T Consensus 86 G~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~-------------g 125 (167)
T 3mmh_A 86 GQAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSD-------------G 125 (167)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEET-------------T
T ss_pred HHHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccC-------------C
Confidence 5677788888899966544211 01 136789999999988 9
Q ss_pred ceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHHH
Q 001215 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQV 390 (1122)
Q Consensus 356 ~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~ 390 (1122)
+++|.|...+..|+.++.+.....+.++..++..|
T Consensus 126 ~viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~~i 160 (167)
T 3mmh_A 126 RCIGVLDADSEHLAQFDETDALYLGELAKILEKRF 160 (167)
T ss_dssp EEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999988898888888888888877776655
No 184
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=97.79 E-value=4e-05 Score=88.21 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=58.4
Q ss_pred EecHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhh--------hcCC
Q 001215 997 HGDKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHD--------MFYH 1068 (1122)
Q Consensus 997 ~~D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~--------iF~~ 1068 (1122)
.++...+.+++.|++.||+++ .++.|.|.+.... .|+|.|||+|||++.+++ +|..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~----~~~~I~V~i~~~~------------~i~V~DnG~GIp~~~~~~~~~~~~e~if~~ 94 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG----YATEILVRLNEDG------------SLTVEDNGRGIPVDLMPEEGKPAVEVIYNT 94 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----SCCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHhhhC----CCCEEEEEEEcCC------------EEEEEEcCCCCCHHHhhhccccchhhheee
Confidence 467788888888888888874 2448888875421 489999999999999877 7865
Q ss_pred CC------------CCCCccchHHHHHHHHHHc
Q 001215 1069 SQ------------GASREGLGLYISQKLVKLM 1089 (1122)
Q Consensus 1069 f~------------~~~GtGLGL~I~r~ive~~ 1089 (1122)
+. ..++.|+||++|+.+.+.+
T Consensus 95 ~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 95 LHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp SCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred eeecccccCccccccCCCCCcceeeecccccce
Confidence 31 1235899999999988643
No 185
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00014 Score=82.63 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCC
Q 001215 1002 RLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHS 1069 (1122)
Q Consensus 1002 ~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f 1069 (1122)
++.+++.||+.||+++.. . .|+|.+.. ++ ...|+|.|||+||+++.+..+|++|
T Consensus 25 ~~~~vv~eLv~NaiDA~a---~-~I~I~i~~-~~---------~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDANA---N-QIEIIFKD-YG---------LESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp SHHHHHHHHHHHHHHTTC---S-EEEEEEET-TT---------TSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred CHHHHHHHHHHHHHHCCC---C-EEEEEEEe-CC---------EEEEEEEECCCCcChhHhccceecc
Confidence 577999999999999864 3 78887742 22 3479999999999999999999996
No 186
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.46 E-value=0.004 Score=64.42 Aligned_cols=142 Identities=10% Similarity=0.054 Sum_probs=100.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-CCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHH
Q 001215 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLT-GYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (1122)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~-~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l 278 (1122)
++.++-.-|+. ..|+..+++.+++.+++.+ +++++.+|-+++ |+.+..... +.. -..+||-.. --+-.-
T Consensus 30 ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~---~~L~l~~~~-G~~--~~~~i~~Ge--Gi~G~a 99 (195)
T 1vhm_A 30 LNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQ-GKI--ACVRIPVGR--GVCGTA 99 (195)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET---TEEEEEEEE-ESC--CCSEEETTS--HHHHHH
T ss_pred HHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC---CEEEEEEec-Ccc--cceEecCCC--ChHHHH
Confidence 44444455666 5599999999999999999 999999999976 454433221 111 133443221 234556
Q ss_pred HHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCcee
Q 001215 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358 (1122)
Q Consensus 279 ~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lW 358 (1122)
+..++.-+|+|+...|--+- | ..++++-++|||+.+ |++.
T Consensus 100 a~tg~~i~V~Dv~~~p~~~~---------------------~------~~~~~S~l~VPI~~~-------------g~vi 139 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHIA---------------------C------DAASNSEIVLPLVVK-------------NQII 139 (195)
T ss_dssp HHHTSCEEESCTTTCTTCCC---------------------S------CCCCSEEEEEEEEET-------------TEEE
T ss_pred HhcCCEEEECCcccCcchhh---------------------c------CCCccEEEEEeEeEC-------------CEEE
Confidence 77888888999776533210 0 125699999999987 9999
Q ss_pred eEEEeecCCCCCCChhhHHHHHHHHHHHHHHHH
Q 001215 359 GLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (1122)
Q Consensus 359 Gl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~~ 391 (1122)
|.|......|+.++.......+.++..++..|+
T Consensus 140 GVL~i~s~~~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 140 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp EEEEEEESSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999888888888888888888887777663
No 187
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.28 E-value=0.0096 Score=59.35 Aligned_cols=144 Identities=12% Similarity=0.179 Sum_probs=100.5
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHH
Q 001215 197 SYKLAAKAISR-LQSLPSGNISLLCDVLVNEVSDLTG-YDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQA 274 (1122)
Q Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~-~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~ 274 (1122)
.|..+..-+++ +.. ..|+...+..++..+++.++ +|++-+|-++. ++.+..+-... +. ..+||-.. --
T Consensus 14 ~~~~ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G~-~a--~~ri~~Ge--Gv 83 (160)
T 3ksh_A 14 NYTLLKKQAASLIED--EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQGH-PA--CVHIPIGK--GV 83 (160)
T ss_dssp CHHHHHHHHHHTTTT--CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEES-CC--CSEEETTS--HH
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccCC-cc--cEEeeCCC--CH
Confidence 34444444444 344 46999999999999999997 99999999874 45554433221 11 22332211 24
Q ss_pred HHHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCccccccccccc
Q 001215 275 SRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQG 354 (1122)
Q Consensus 275 ~r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~ 354 (1122)
.-.-+..++.-+|+|+...|--+- | ..++++-++|||+.+
T Consensus 84 ~G~aa~~~~~i~V~Dv~~~p~~i~---------------------~------~~~~~Sei~VPI~~~------------- 123 (160)
T 3ksh_A 84 CGTAVSERRTQVVADVHQFKGHIA---------------------C------DANSKSEIVVPIFKD------------- 123 (160)
T ss_dssp HHHHHHHTSCEEESCGGGSTTCCG---------------------G------GTTCSEEEEEEEEET-------------
T ss_pred HHHHHhhCCEEEECCcccCccccc---------------------c------CcccCceEEEEEEEC-------------
Confidence 566788899999999765543220 1 235789999999988
Q ss_pred CceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHHH
Q 001215 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQV 390 (1122)
Q Consensus 355 ~~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~~ 390 (1122)
|+++|.|...+..|+.++.......+.++..++..|
T Consensus 124 g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~~ 159 (160)
T 3ksh_A 124 DKIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQL 159 (160)
T ss_dssp TEEEEEEEEEESSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999988888888888888888877766543
No 188
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.07 E-value=0.0067 Score=61.98 Aligned_cols=141 Identities=8% Similarity=-0.018 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-----CCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHH
Q 001215 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLT-----GYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (1122)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~-----~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r 276 (1122)
.++-.-+.. ..++..+++.+++.+.+.+ +++++.+|-++++..++.+.-....... ..+||-.. --.-
T Consensus 30 ~~l~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~---~~~i~~g~--Gi~G 102 (180)
T 1f5m_A 30 LSYEGLSDG--QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVA---CQMIQFGK--GVCG 102 (180)
T ss_dssp HHHHHHHTT--CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCC---CSEEETTS--HHHH
T ss_pred HHHHHHHhc--CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCcc---ceeecCCC--cchh
Confidence 333333455 4589999999999999998 9999999999987645555422111111 23444322 1234
Q ss_pred HHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEE-eCCcccccccccccC
Q 001215 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDNDQEQGR 355 (1122)
Q Consensus 277 ~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~-~~~~~~~~~~~~~~~ 355 (1122)
.-+..++.-+|+|+...|--+ .| ..+++|-+++||+. + |
T Consensus 103 ~aa~~g~~v~v~Dv~~dp~~~---------------------~~------~~~~~S~l~vPi~~~~-------------g 142 (180)
T 1f5m_A 103 TAASTKETQIVPDVNKYPGHI---------------------AC------DGETKSEIVVPIISND-------------G 142 (180)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEECTT-------------S
T ss_pred hhhhcCCEEEeCCcccCcccc---------------------cc------CcccceEEEEEEEcCC-------------C
Confidence 556777777888865443211 01 13789999999998 6 9
Q ss_pred ceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHH
Q 001215 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQ 389 (1122)
Q Consensus 356 ~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~ 389 (1122)
++.|.|..++..|+..+......++.++..++..
T Consensus 143 ~viGVL~l~s~~~~~F~~~d~~~L~~la~~~a~~ 176 (180)
T 1f5m_A 143 KTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKS 176 (180)
T ss_dssp CEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 9999999998888888888888888887776654
No 189
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.06 E-value=0.00017 Score=76.37 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcCCC------------CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCC
Q 001215 1005 QVLSDFLTNALIFTPA------------FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYH 1068 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~~------------~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~ 1068 (1122)
.+|.+|+.||+++... ..++.|.|.+....+ ...|+|.|||+||+++.+...|..
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~---------~~~i~I~DnG~GMs~edl~~~l~~ 95 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE---------QKVLEIRDSGIGMTKAELINNLGT 95 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGG---------GTEEEEEECSCCCCHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCC---------CCEEEEEEcCCCCCHHHHHHHHHh
Confidence 6889999999998641 012355555544333 235899999999999998777654
No 190
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.015 Score=58.48 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=99.8
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHH
Q 001215 197 SYKLAAKAISR-LQSLPSGNISLLCDVLVNEVSDLTG-YDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQA 274 (1122)
Q Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~-~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~ 274 (1122)
.|..+..-+++ +.. ..|+...+..++..+++.++ +|++-+|-+++ ++.+..+-.. .+. ..+||-.. --
T Consensus 15 ~~~~ll~~l~~ll~~--~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~G-~~a--~~ri~~Ge--Gv 84 (171)
T 3rfb_A 15 RYQMLNEELSFLLEG--ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQG-GVS--CIRIALGK--GV 84 (171)
T ss_dssp HHHHHHHHHHHHHTT--CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEES-SSC--CCEEETTS--HH
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEeccC-Ccc--ceEeeCCc--CH
Confidence 45544444444 344 56999999999999999997 99999999874 4555443221 111 22332111 24
Q ss_pred HHHHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCccccccccccc
Q 001215 275 SRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQG 354 (1122)
Q Consensus 275 ~r~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~ 354 (1122)
.-.-+..++.-+|+|+...|--+- | ..++++-++|||+.+
T Consensus 85 ~G~va~tg~~i~V~Dv~~~p~~i~---------------------~------~~~~~Sei~VPI~~~------------- 124 (171)
T 3rfb_A 85 CGEAAHFQETVIVGDVTTYLNYIS---------------------C------DSLAKSEIVVPMMKN------------- 124 (171)
T ss_dssp HHHHHHTTSCEEESCTTSCSSCCC---------------------S------CTTCCEEEEEEEEET-------------
T ss_pred HHHHHhhCCEEEECCcccCccccc---------------------c------CcccCceEEEEEEEC-------------
Confidence 566788899999999877654321 1 124688899999988
Q ss_pred CceeeEEEeecCCCCCCChhhHHHHHHHHHHHHHH
Q 001215 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQ 389 (1122)
Q Consensus 355 ~~lWGl~~~h~~~pr~~~~~~r~~~~~l~~~~~~~ 389 (1122)
|+++|.|...+..++..+.......+.++..++..
T Consensus 125 g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~ 159 (171)
T 3rfb_A 125 GQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEK 159 (171)
T ss_dssp TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888777777777766543
No 191
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.81 E-value=0.0002 Score=77.65 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCC---------C---CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcC
Q 001215 1005 QVLSDFLTNALIFTP---------A---FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFY 1067 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~---------~---~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~ 1067 (1122)
.+|.+|+.||+++.. + ..++.+.|.+....+ .-.|+|.|||+||+.+.+...|.
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~---------~~~l~I~DnGiGMt~edl~~~l~ 96 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE---------KNLLHVTDTGVGMTREELVKNLG 96 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC---------ceEEEEEECCCCCCHHHHHHHhh
Confidence 488999999998853 0 012344555544333 22588999999999998765553
No 192
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=96.80 E-value=0.0038 Score=57.62 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhh-cc
Q 001215 882 QAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDT-DI 944 (1122)
Q Consensus 882 ~~~~~k~~fLa~isHELrnPLt~I~g~~~lL~~~~l~~~~~~~L~~i~~~~~rl~~iI~dL-d~ 944 (1122)
+....+..|++.++||+||||+.|.++.+++... ....++.+...+++|..+++++ ++
T Consensus 55 ~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 55 QLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566789999999999999999999988642 3445688899999999999996 55
No 193
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.77 E-value=0.0025 Score=73.14 Aligned_cols=71 Identities=11% Similarity=0.216 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhh--------hhhhcCCC------
Q 001215 1004 QQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKL--------IHDMFYHS------ 1069 (1122)
Q Consensus 1004 ~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~--------~~~iF~~f------ 1069 (1122)
..++.+++.||++..-......|.|.+...+ .|+|.|||.|||.+. ++.+|..+
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf 100 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHADQ------------SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEecCC------------EEEEEECCCCcCcccccccCcchhhheeeeecccCCc
Confidence 5677777777776632112458888875432 499999999999988 56667653
Q ss_pred ----CCCC-C-ccchHHHHHHHH
Q 001215 1070 ----QGAS-R-EGLGLYISQKLV 1086 (1122)
Q Consensus 1070 ----~~~~-G-tGLGL~I~r~iv 1086 (1122)
.+.+ | .|.||+.+..+-
T Consensus 101 ~~~~~~~sgGl~GvGls~vnalS 123 (390)
T 1s16_A 101 SNKNYQFSGGLHGVGISVVNALS 123 (390)
T ss_dssp SSSSCSSCSCCSSCHHHHHHHTE
T ss_pred CCCcccccCCccccchHHHHHhh
Confidence 1122 3 699999997665
No 194
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.53 E-value=0.0047 Score=70.81 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhh--------hhcCCC----
Q 001215 1002 RLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIH--------DMFYHS---- 1069 (1122)
Q Consensus 1002 ~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~--------~iF~~f---- 1069 (1122)
.|..++.+++.||++.+-......|.|.+...+ .|+|.|||.|||.+..+ -+|...
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhags 101 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 101 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEES
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC------------EEEEEECCCCcccCcccccCcchHHHhheeccccC
Confidence 688999999999998843212447888876532 49999999999998743 355431
Q ss_pred ------CCCC-C-ccchHHHHHHHHH
Q 001215 1070 ------QGAS-R-EGLGLYISQKLVK 1087 (1122)
Q Consensus 1070 ------~~~~-G-tGLGL~I~r~ive 1087 (1122)
.+.+ | .|.||+.+..+-+
T Consensus 102 Kf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 102 KFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp CSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred CcCCCcccccCCccccchHHHHHhcC
Confidence 1222 3 6999999966653
No 195
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.45 E-value=0.0037 Score=59.33 Aligned_cols=95 Identities=2% Similarity=-0.012 Sum_probs=72.0
Q ss_pred cEEEecCCCcEEeccHHHHHHcCCCc--hhhcCCcccccccCCchH--HHHHHHHHHHcCCcceeEEEEEEEeCCCCCCC
Q 001215 623 PILAVDASGNVNGWNSKAAELTGLTV--DQAIGTALVDLVAGDSVD--VVKNMLSSAFLGIEERNVEIKLRAFGPRETSG 698 (1122)
Q Consensus 623 gI~~~D~dG~Iv~~N~~~~~l~G~s~--eeliG~~~~dl~~~~~~~--~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~ 698 (1122)
-+.-.|.+|+|+++.++.. ..++.. +|++|+++.+++|++|.+ .+.+..+.++..+....--++++ .++|+
T Consensus 9 F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr----~k~g~ 83 (132)
T 1oj5_A 9 FMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFI----LNDGT 83 (132)
T ss_dssp EEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEE----CTTSC
T ss_pred eEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEE----ecCCc
Confidence 3455789999999999987 477777 899999999999999976 88888888887555444445555 56899
Q ss_pred eEEEEEEEEEecCCC-CCEEEEEEE
Q 001215 699 PVILVVNACCTQDTK-ENVIGVCFV 722 (1122)
Q Consensus 699 ~~~v~v~~~pi~d~~-G~v~gvv~v 722 (1122)
.+|+......+++.. +++..++++
T Consensus 84 ~V~~qT~sk~f~np~t~e~e~Ivs~ 108 (132)
T 1oj5_A 84 MLSAHTRCKLCYPQSPDMQPFIMGI 108 (132)
T ss_dssp EEEEEEEEEEECC----CCCEEEEE
T ss_pred EEEEEEEEEEecCCCCCCCCEEEEE
Confidence 999999999888753 333444444
No 196
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.33 E-value=0.0083 Score=56.94 Aligned_cols=99 Identities=10% Similarity=0.080 Sum_probs=74.8
Q ss_pred eEEecCCCCeeeeehhHHHhcCCCh--HHHhhhhccccccccccccccccCcchHH--HHHHHHHHHhcCCCcceeEEEE
Q 001215 757 IFMTDEDGRCLEWNDGMEKLSGLKR--EEAIERMLIGEVFTVKNFGCRVKNHDTLT--KLRIVMNKVISGQDADKILFGF 832 (1122)
Q Consensus 757 I~~~D~dg~ii~~N~a~~~l~G~~~--eeliGk~l~~~i~~~~~~~~~l~~~d~~~--~~~~~l~~~l~g~~~~~~e~~~ 832 (1122)
+.-.|.+|+|+++..+.. ..++.+ +|++|+. ++++.|++|.. .+...+.+++..+......++|
T Consensus 10 ~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrs-----------iy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRf 77 (132)
T 1oj5_A 10 MTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKC-----------IYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRF 77 (132)
T ss_dssp EEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHH-----------HHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEE
T ss_pred EEeecCCCcEEEEecccc-cccccccHHHHHHHH-----------HHHHhCcccchHHHHHHHHHHHHHcCCccccceEE
Confidence 556799999999999887 467777 9999998 45777788865 7888888888777777888999
Q ss_pred EccCCCEEEEEEEEeeeeCC-CCCEEEEEEeeeccc
Q 001215 833 FDQQGKYVEALLSANKRTNA-EGKISGILCFLHVAS 867 (1122)
Q Consensus 833 ~~~dG~~~~v~~~~~pv~d~-~G~i~gvv~~l~DIT 867 (1122)
+.++|.++|+......+.+. .+++-.++++-.-+.
T Consensus 78 r~k~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 78 ILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp ECTTSCEEEEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred EecCCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 99999999999888777664 233334445433333
No 197
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.32 E-value=0.0018 Score=70.11 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCC------------CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCCC---
Q 001215 1005 QVLSDFLTNALIFTPA------------FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYHS--- 1069 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~~------------~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~f--- 1069 (1122)
.+|.+|+.||+++... ..++.|.|.+....+ .-.|+|.|||+||+.+.+...|...
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~---------~~~I~I~DnG~GMs~edL~~~l~~ia~S 141 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGTIAKS 141 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCC---------eeEEEEEECCcCCCHHHHHHHHHhhccc
Confidence 5889999999987640 002355555544333 1258899999999999876555321
Q ss_pred ---------------CCCCCccchHHHHHHHH
Q 001215 1070 ---------------QGASREGLGLYISQKLV 1086 (1122)
Q Consensus 1070 ---------------~~~~GtGLGL~I~r~iv 1086 (1122)
...+..|+|++.+..++
T Consensus 142 ~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 142 GTKAFMEALQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp CHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred cchhhhhhhccccchhhcCCCCCCccccccCC
Confidence 01123589998776554
No 198
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.16 E-value=0.0085 Score=63.88 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcCC--------------CCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcCC
Q 001215 1005 QVLSDFLTNALIFTP--------------AFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFYH 1068 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~--------------~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~~ 1068 (1122)
.+|.+|+.||+++.. ......|.|.+..... .|+|.|||+||+++.+...|..
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-----------~i~I~DnG~GMs~edl~~~~~~ 116 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHLGT 116 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-----------EEEEEECSSCCCHHHHHHHHTT
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-----------EEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999862 0011245554432222 4899999999999998877744
No 199
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.93 E-value=0.011 Score=61.31 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhh
Q 001215 1004 QQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLI 1062 (1122)
Q Consensus 1004 ~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~ 1062 (1122)
..++.+||.||++..-......|.|.+.. + . .++|.|||.|||.+..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~--~---------g-~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA--D---------Q-SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT--T---------S-CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC--C---------C-EEEEEECCCCcCcccc
Confidence 68999999999988432113478888643 2 1 4899999999999874
No 200
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.86 E-value=0.011 Score=61.99 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhh--------hhhcCC----
Q 001215 1001 LRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLI--------HDMFYH---- 1068 (1122)
Q Consensus 1001 ~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~--------~~iF~~---- 1068 (1122)
..|..++.++|.||++..-......|.|.+...+ .++|.|||.|||.+.. +-+|..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g------------~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC------------cEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 5788999999999998743212347888765422 3899999999999864 334421
Q ss_pred --CC----CC-CC-ccchHHHHHHHH
Q 001215 1069 --SQ----GA-SR-EGLGLYISQKLV 1086 (1122)
Q Consensus 1069 --f~----~~-~G-tGLGL~I~r~iv 1086 (1122)
|. +. .| .|.|++.+.-+-
T Consensus 102 ~Kfd~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 102 GKFDDNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp SCCCTTC--------CCCHHHHHHTE
T ss_pred CCcCCCccccccCccceecchhcccc
Confidence 21 11 12 589999886553
No 201
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=95.82 E-value=0.02 Score=65.10 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhh
Q 001215 999 DKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKL 1061 (1122)
Q Consensus 999 D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~ 1061 (1122)
+...|..++.+|+.||++..-......|.|.+...+ .|+|.|||.|||.|.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g------------~I~V~DnGrGIp~e~ 77 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG------------SIALFCTSRTVTAEN 77 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEEEESSCCHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC------------EEEEEECCCCcCHhH
Confidence 456899999999999999643212347887765432 499999999999843
No 202
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.78 E-value=0.021 Score=60.08 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhh-------hhhhcCC---
Q 001215 999 DKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKL-------IHDMFYH--- 1068 (1122)
Q Consensus 999 D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~-------~~~iF~~--- 1068 (1122)
+..-|.+++.+++.||++..-......|.|.+.... .++|.|||.|||.+. .+-+|..
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g------------~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lha 104 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG------------SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHA 104 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC------------eEEEEEcCCCccccccccCceehheeEEeecc
Confidence 356788999999999998753212347777764422 389999999999987 5555632
Q ss_pred ---CC----CC-CC-ccchHHHHHHH
Q 001215 1069 ---SQ----GA-SR-EGLGLYISQKL 1085 (1122)
Q Consensus 1069 ---f~----~~-~G-tGLGL~I~r~i 1085 (1122)
|. +. .| .|.|++.+.-+
T Consensus 105 g~Kfd~~~yk~SgGlhGvG~svvNAL 130 (226)
T 4emv_A 105 GGKFGQGGYKTSGGLHGVGSSVVNAL 130 (226)
T ss_dssp -------------CGGGCCHHHHHHT
T ss_pred cCccCccceEeccccccccchhhhhc
Confidence 21 11 23 58999988544
No 203
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=95.62 E-value=0.19 Score=49.55 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHH
Q 001215 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (1122)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r 276 (1122)
.++++-.+-..|-++ +.+++++.++...++++|+||..+|-+++| |+....+.... ..|
T Consensus 13 rLrlL~e~~~~L~~l---~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~G~----------------~~~ 71 (160)
T 3cit_A 13 RLRLLVDTGQELIQL---PPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARHGS----------------KER 71 (160)
T ss_dssp HHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEESC----------------HHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCeeEEEEEcCC--CceeeeeccCc----------------hhh
Confidence 455666666667443 679999999999999999999999999995 65544433221 111
Q ss_pred HHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEE-EeCCcccccccccccC
Q 001215 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVT-INEAEDELDNDQEQGR 355 (1122)
Q Consensus 277 ~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~-~~~~~~~~~~~~~~~~ 355 (1122)
...+|+++|.....-.- + +..-+..++-|+||+. .+ |
T Consensus 72 ----l~~lr~~~~~~~~gpr~-----------------------~--~~tg~~t~svl~vPL~~~~-------------g 109 (160)
T 3cit_A 72 ----LSTLETTADPLAIGPQW-----------------------L--ERPGTHLPCVLLLPLRGAD-------------E 109 (160)
T ss_dssp ----HTTSCCCCCTTCCSCEE-----------------------E--ECTTSSSCEEEEEEEECSS-------------S
T ss_pred ----hhhhhcccccccccccc-----------------------c--cccCcccceeEEEeeecCC-------------C
Confidence 34455566644331000 0 0223345777999995 44 9
Q ss_pred ceeeEEEeecCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 001215 356 KLWGLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 356 ~lWGl~~~h~~~-pr~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
+.+|.+.+=+.. ...+..+...+++.|+..++.+|..
T Consensus 110 ~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien 147 (160)
T 3cit_A 110 GSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLEN 147 (160)
T ss_dssp SEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999986664 5578888899999999998888754
No 204
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=95.35 E-value=0.0028 Score=81.19 Aligned_cols=142 Identities=7% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCC---------CCCccCCCCCCCCccHHHHHHHHhCCe
Q 001215 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD---------LEPYLGFHYPATDIPQASRFLIMKNKV 284 (1122)
Q Consensus 214 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~---------~~~~lg~~~pa~dip~~~r~l~~~~~~ 284 (1122)
.+++++++.+++.+++++|+||+.||-+++++. +.++.+.... ..+.-+.++|-.. .-+...+..++.
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~-~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDCS-DSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCccc-chhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 489999999999999999999999999998643 4444433211 1111133343221 112233444555
Q ss_pred EEeecCCCCcceeecCCCCCCCCcccCccccCCChhHHHHHHh---cCceeEEEEEEEEeCCccccccccccc-CceeeE
Q 001215 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMEN---MGSIASLVMSVTINEAEDELDNDQEQG-RKLWGL 360 (1122)
Q Consensus 285 r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n---~~v~a~l~~~i~~~~~~~~~~~~~~~~-~~lWGl 360 (1122)
-.|.|+...|- + +.+...... .++++-|++||+.+ + |+++|.
T Consensus 425 v~i~D~~~d~r--~--------------------~~~~~~~~g~~~~~~rS~L~vPL~~~------------~~g~viGV 470 (878)
T 3bjc_A 425 LNIPDVSKDKR--F--------------------PWTTENTGNVNQQCIRSLLCTPIKNG------------KKNKVIGV 470 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCcccccc--c--------------------ccccccccCccccccceEEEEEEecC------------CCCcEEEE
Confidence 55555332221 0 111111222 66899999999854 2 689999
Q ss_pred EEeecCCC------CCCChhhHHHHHHHHHHHHHHHHH
Q 001215 361 VVCHHTSP------RFVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 361 ~~~h~~~p------r~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
|...+..+ +.++.......+.++..+++.|..
T Consensus 471 L~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIen 508 (878)
T 3bjc_A 471 CQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQN 508 (878)
T ss_dssp --------------------------------------
T ss_pred EEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99988765 688888888888888888887754
No 205
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=95.22 E-value=0.058 Score=49.28 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhh-ccc
Q 001215 885 ANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDT-DIE 945 (1122)
Q Consensus 885 ~~k~~fLa~isHELrnPLt~I~g~~~lL~~~~l~~~~~~~L~~i~~~~~rl~~iI~dL-d~s 945 (1122)
..+..+++.++||+++|++.|.+..+.+... ..+..+.+.+.+.++..+++++ +++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778999999999999999999987643 2566778888889999999986 665
No 206
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=94.95 E-value=0.061 Score=61.61 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhh--------hhhhcCC--
Q 001215 1000 KLRLQQVLSDFLTNALIFT-PAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKL--------IHDMFYH-- 1068 (1122)
Q Consensus 1000 ~~~L~QVL~NLL~NAik~t-~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~--------~~~iF~~-- 1068 (1122)
..-|..++.+++.||++.. ...-...|.|.+...++ .|+|.|||.|||.+. ++-+|..
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~-----------~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lh 118 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN-----------LISIWNNGKGIPVVEHKVEKMYVPALIFGQLL 118 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEEESSCCCCSEETTTTEEHHHHHHHSSS
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCCC-----------EEEEEECCCcccCccccccCccchhheeeeec
Confidence 3578999999999999886 11124588888776533 489999999999987 3334542
Q ss_pred ----C----C-CCCC-ccchHHHHHHH
Q 001215 1069 ----S----Q-GASR-EGLGLYISQKL 1085 (1122)
Q Consensus 1069 ----f----~-~~~G-tGLGL~I~r~i 1085 (1122)
| . ...| .|.|++.+..+
T Consensus 119 agsKf~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 119 TSSNYDDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp EESCCCGGGCCCCSCCSSCHHHHHHHT
T ss_pred ccCCCCCCcccccCCccccceeeeEEe
Confidence 2 1 1223 59999998655
No 207
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.042 Score=66.72 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCC---------C-----CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhc
Q 001215 1005 QVLSDFLTNALIFTP---------A-----FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMF 1066 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~---------~-----~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF 1066 (1122)
-+|.+|+.||+++.. + .....|.|.+..... .|+|.|||+||+.+.+..-|
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-----------VLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGT-----------EEEEEECSCCCCHHHHHGGG
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCC-----------EEEEEECCCCCCHHHHHHHH
Confidence 478999999998862 0 011245555433222 58899999999998876544
No 208
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=94.52 E-value=0.095 Score=60.32 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhh--------hcCC---
Q 001215 1001 LRLQQVLSDFLTNALIFT-PAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHD--------MFYH--- 1068 (1122)
Q Consensus 1001 ~~L~QVL~NLL~NAik~t-~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~--------iF~~--- 1068 (1122)
.-|.+++.++|.||++.. .......|.|.+...++ .++|.|||.|||.+...+ +|..
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~~-----------sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lha 131 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 131 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCCC-----------EEEEEECCCcccCcccccCCcccceEEEEEEec
Confidence 468899999999999765 11134589988877544 488899999999987543 4422
Q ss_pred ---C----CCC-CC-ccchHHHHHHH
Q 001215 1069 ---S----QGA-SR-EGLGLYISQKL 1085 (1122)
Q Consensus 1069 ---f----~~~-~G-tGLGL~I~r~i 1085 (1122)
| .+. +| .|.|.+.|.-+
T Consensus 132 GgKfd~~~ykvSGGLhGVG~SvVNAL 157 (418)
T 1pvg_A 132 SSNYDDDEKKVTGGRNGYGAKLCNIF 157 (418)
T ss_dssp ESCCCTTSCCCCSCCSSCHHHHHHHT
T ss_pred ccccCCCceeccCCccceeeeeeeec
Confidence 2 222 23 59999998544
No 209
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.44 E-value=0.021 Score=69.26 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEecHHHHHHHHHHHHHHHhhcC---------CC-----CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhh
Q 001215 996 LHGDKLRLQQVLSDFLTNALIFT---------PA-----FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKL 1061 (1122)
Q Consensus 996 v~~D~~~L~QVL~NLL~NAik~t---------~~-----~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~ 1061 (1122)
++.++. -+|.+|+.||+++. .+ .....|.|.+..... .|+|.|||+||+.+.
T Consensus 42 LYsn~e---ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 42 LYKNKE---IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKN-----------LLHVTDTGVGMTREE 107 (666)
T ss_dssp TSSSCT---THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHH
T ss_pred ccCCch---HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCC-----------EEEEEECCCCCCHHH
Confidence 445543 58899999999886 10 011245555433222 488999999999988
Q ss_pred hhhhc
Q 001215 1062 IHDMF 1066 (1122)
Q Consensus 1062 ~~~iF 1066 (1122)
+..-|
T Consensus 108 l~~~l 112 (666)
T 2o1u_A 108 LVKNL 112 (666)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76555
No 210
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=94.41 E-value=0.11 Score=53.62 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhh
Q 001215 999 DKLRLQQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKL 1061 (1122)
Q Consensus 999 D~~~L~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~ 1061 (1122)
+...|..++.+++.||++..-..-...|.|.+...+ .++|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC------------eEEEEECCCCccccc
Confidence 457889999999999998632111448888865532 489999999999974
No 211
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=93.99 E-value=0.054 Score=58.54 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCC---------C---CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhc----CC
Q 001215 1005 QVLSDFLTNALIFTP---------A---FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMF----YH 1068 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~---------~---~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF----~~ 1068 (1122)
-.|.+||.||.++.. + ..++.+.|.+....+ .-.|+|.|||+||+.+.+..-+ ..
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~---------~~tLtI~DNGiGMt~edL~~~LgtIa~S 119 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE---------KNILSITDTGIGMTKVDLINNLGTIAKS 119 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCC---------CcEEEEEeCCCCCCHHHHHHHHHHHHhH
Confidence 467899999987752 0 012234444444333 1157888999999998764322 11
Q ss_pred ---------------CCCCCCccchHHHHHHH
Q 001215 1069 ---------------SQGASREGLGLYISQKL 1085 (1122)
Q Consensus 1069 ---------------f~~~~GtGLGL~I~r~i 1085 (1122)
....+.-|+|++-+-.+
T Consensus 120 gtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v 151 (281)
T 3peh_A 120 GTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 151 (281)
T ss_dssp CHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT
T ss_pred hhhhHHHhhhccccccccccccCccchhhccc
Confidence 12335569999776443
No 212
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=93.83 E-value=0.045 Score=58.29 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCC---------C---CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcC
Q 001215 1005 QVLSDFLTNALIFTP---------A---FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFY 1067 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~---------~---~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~ 1067 (1122)
.+|.+|+.||+++.. + ..++.+.|.+....+ .-.|+|.|||+||+.+.+...|.
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~---------~~~i~I~DnG~GMt~edl~~~l~ 100 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE---------KNLLHVTDTGVGMTREELVKNLG 100 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCC---------CCEEEEEECCcCCCHHHHHHHHh
Confidence 578999999998853 0 011233444433333 12589999999999999876664
No 213
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=93.75 E-value=0.1 Score=59.63 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhh--------hhhcCC------C
Q 001215 1004 QQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLI--------HDMFYH------S 1069 (1122)
Q Consensus 1004 ~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~--------~~iF~~------f 1069 (1122)
..++.++|.||++..-......|.|.+...+ .++|.|||.|||.+.. +-+|.. |
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~dg------------sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKf 119 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDG------------SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKF 119 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeCCC------------eEEEEEcCCCCCcccccccCCcchheEEEecccCCCc
Confidence 6788899999987743223447887764322 3899999999999874 334522 2
Q ss_pred ----CCC-CC-ccchHHHHHHH
Q 001215 1070 ----QGA-SR-EGLGLYISQKL 1085 (1122)
Q Consensus 1070 ----~~~-~G-tGLGL~I~r~i 1085 (1122)
.+. .| .|.|++.+.-+
T Consensus 120 d~~~ykvSgGlhGvG~svVNAL 141 (408)
T 3lnu_A 120 NNRNYTFSGGLHGVGVSVVNAL 141 (408)
T ss_dssp --------------CHHHHHHT
T ss_pred CCCceeecCCccccccceehhc
Confidence 112 23 58999988544
No 214
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.65 E-value=0.085 Score=62.90 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCC--------------CCCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcC
Q 001215 1005 QVLSDFLTNALIFTP--------------AFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFY 1067 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~--------------~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~ 1067 (1122)
.+|.+|+.||+++.. ......|.|.+..... .|+|.|||+||+.+.+..-|.
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l~ 95 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHLG 95 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTT-----------EEEEEECSSCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCc-----------EEEEEECCCCCCHHHHHHHHh
Confidence 578999999998871 0012356665533222 578899999999988765443
No 215
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=93.21 E-value=0.03 Score=59.08 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCC------------CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhcC
Q 001215 1005 QVLSDFLTNALIFTPA------------FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMFY 1067 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~~------------~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF~ 1067 (1122)
-+|.+|+.||+++... ..++.+.|.+....+ .-.|+|.|||.||+++.+..-|.
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~---------~~~i~V~DnG~GMs~edl~~~l~ 100 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLG 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTGGG
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCC---------eeEEEEEeCCCCCCHHHHHHHHH
Confidence 5788999999877420 012244555544333 12588999999999998866554
No 216
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=92.39 E-value=0.04 Score=58.88 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCC------------CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhc
Q 001215 1005 QVLSDFLTNALIFTPA------------FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMF 1066 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~~------------~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF 1066 (1122)
-+|.+|+.||.++... ..++.+.|.+....+ .-.|+|.|||+||+++.+..-|
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCC---------ceEEEEecCCCCcCHHHHHHHH
Confidence 5789999999877421 012244555544333 1258899999999998875433
No 217
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=90.66 E-value=0.079 Score=56.01 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcCCC------------CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhh
Q 001215 1005 QVLSDFLTNALIFTPA------------FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIH 1063 (1122)
Q Consensus 1005 QVL~NLL~NAik~t~~------------~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~ 1063 (1122)
-.|.+|+.||.++... ..++.+.|.+....+ .-.|+|.|||+||+++.+.
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ---------ERTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC---------ccEEEEEeCCCCCCHHHHH
Confidence 5788999999876420 012244455444333 1258899999999998863
No 218
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=89.42 E-value=0.28 Score=59.33 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcC---------CC-----CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhhhhc
Q 001215 1005 QVLSDFLTNALIFT---------PA-----FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIHDMF 1066 (1122)
Q Consensus 1005 QVL~NLL~NAik~t---------~~-----~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~~iF 1066 (1122)
.+|.+|+.||+++. .+ .....|.|.+..... .|+|.|||+||+.+.+..-|
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l 94 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHL 94 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCc-----------EEEEEECCCCCCHHHHHHHH
Confidence 67899999999886 10 012356655433222 57889999999998865443
No 219
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=89.03 E-value=0.091 Score=55.67 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCChhhhhhhc
Q 001215 1047 EFRITHPAPGIPEKLIHDMF 1066 (1122)
Q Consensus 1047 ~~~V~D~G~GI~~e~~~~iF 1066 (1122)
.|+|.|||+||+.+.+..-|
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 58899999999999877654
No 220
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=82.49 E-value=9.2 Score=40.17 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=80.4
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCC
Q 001215 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNK 283 (1122)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~ 283 (1122)
++.++++. .+.+++.+.+ ..+.+.+|||++..+-+.+...+ .+ ..++ -+..|....+.|..+.
T Consensus 8 ~~~~l~~a--~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~i-----~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSRI--TTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYHF-----LSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHHC--CSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEEE-----EECCCHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeEe-----eCCCCHHHHHHHHHCC
Confidence 56777774 4899998887 78888999999998876653211 00 1111 2355788889998886
Q ss_pred eEEeecCCCCcceeec-CCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEE
Q 001215 284 VRMICDCLAPPVKVIQ-DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVV 362 (1122)
Q Consensus 284 ~r~i~d~~~~~~~~~~-~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~ 362 (1122)
...| | | ++. ......|+.-+....+. .+--.++.+.+|+...+++|+.-. +..+|++.
T Consensus 71 y~~~-D----P--v~~~~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~-------------~g~~g~ls 129 (237)
T 3szt_A 71 YTSI-D----P--IVRHGLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGK-------------YGLISMLS 129 (237)
T ss_dssp GGGT-C----H--HHHHHHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECG-------------GGCEEEEE
T ss_pred Cccc-C----h--HhhhhcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCC-------------CCCeEEEE
Confidence 5433 2 2 221 01112333333222222 255667888999999999999755 77888888
Q ss_pred eecCCC
Q 001215 363 CHHTSP 368 (1122)
Q Consensus 363 ~h~~~p 368 (1122)
.....+
T Consensus 130 ~~~~~~ 135 (237)
T 3szt_A 130 LVRSSE 135 (237)
T ss_dssp EEESSS
T ss_pred EecCCC
Confidence 765544
No 221
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=82.20 E-value=1.6 Score=48.60 Aligned_cols=47 Identities=6% Similarity=0.126 Sum_probs=39.7
Q ss_pred EEecC-CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHH
Q 001215 625 LAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNM 671 (1122)
Q Consensus 625 ~~~D~-dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~ 671 (1122)
+++|. +++|+.+|..+.+++|+++++++|+++.++++++....+...
T Consensus 46 l~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~ 93 (337)
T 2ool_A 46 FVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHA 93 (337)
T ss_dssp EEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHH
T ss_pred EEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHH
Confidence 44665 489999999999999999999999999999998776655443
No 222
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=81.94 E-value=21 Score=33.71 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCc
Q 001215 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294 (1122)
Q Consensus 215 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~ 294 (1122)
++++..+..-+-.+++.|+-=..||-||..-.--.=| +.-++ |...-.+|..-+ +.+| .
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~--rs~~~-------------pa~~l~~~r~mp--l~p~----k 71 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPA--RSTGL-------------PASFLPVFREMP--LAPD----K 71 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEE--EEESC-------------CGGGHHHHHHCC--BCTT----T
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccc--cccCC-------------chhhhHHHhhCC--CCCC----c
Confidence 7888888888889999999999999999765433333 32232 222222232211 1222 1
Q ss_pred ceeec----CCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCC-
Q 001215 295 VKVIQ----DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR- 369 (1122)
Q Consensus 295 ~~~~~----~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr- 369 (1122)
+|++- +...--+-|-+.|.| ..|-...+++|+.+-| +|++++ ++.=|.+.+-..++|
T Consensus 72 ~pllk~~lr~~~hll~~dp~~s~l--~tp~l~k~~~~~~ILg---VPL~~g-------------~qVIGVLFaArR~~R~ 133 (162)
T 3eea_A 72 IPLLKSMLRKRQHLMLTDPGSSDL--LTPKLRKLLRNLCVLA---VPMVVR-------------TQVIGAVFMARTRDNP 133 (162)
T ss_dssp CHHHHHHHHHTCCEEESCGGGCTT--SCHHHHHHTTTEEEEE---EEEEET-------------TEEEEEEEEEEETTSC
T ss_pred cHHHHHHHHhcCccccCCCCcchh--ccHHHHHHHhhCeEEE---ecceeC-------------CEEEEEEEEecccccC
Confidence 22210 000000111122222 4578899999998877 999999 999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 001215 370 FVPFPLRYACEFLIQVFGVQVNK 392 (1122)
Q Consensus 370 ~~~~~~r~~~~~l~~~~~~~~~~ 392 (1122)
..+.++......|+...++.|+.
T Consensus 134 ~Fs~dEiALL~SLAahAAIAIdn 156 (162)
T 3eea_A 134 PFSDAETAIIRDLVSHAALVVSH 156 (162)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999888888888887754
No 223
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=80.85 E-value=2.6 Score=54.64 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcCCC-CCCCeEEEEEEecccccCccceeEEEEEEEEcCCCCCChhhhh--------hhcCC----
Q 001215 1002 RLQQVLSDFLTNALIFTPA-FEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAPGIPEKLIH--------DMFYH---- 1068 (1122)
Q Consensus 1002 ~L~QVL~NLL~NAik~t~~-~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~GI~~e~~~--------~iF~~---- 1068 (1122)
-|..++.+.|.||++-.-. .....|.|++...++ .++|.|||.|||-+... -+|..
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~-----------sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC-----------EEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 6889999999999984321 012368888876555 48899999999977543 23322
Q ss_pred --C----CCC-CC-ccchHHHHHHH
Q 001215 1069 --S----QGA-SR-EGLGLYISQKL 1085 (1122)
Q Consensus 1069 --f----~~~-~G-tGLGL~I~r~i 1085 (1122)
| .+. +| .|.|.+.|.-+
T Consensus 128 gKFd~~~ykvSGGLHGVG~svVNAL 152 (1177)
T 4gfh_A 128 SNYDDDEKKVTGGRNGYGAKLCNIF 152 (1177)
T ss_dssp SCCCCSSCCCCSCCSSCHHHHHHHT
T ss_pred cCcCCCCCeEeccCCChhhhHHhhc
Confidence 2 122 23 59999998554
No 224
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=78.34 E-value=11 Score=38.32 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCc--cEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEE
Q 001215 608 IITNEMVRLIETAAV--PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVE 685 (1122)
Q Consensus 608 ~~e~~l~~lie~a~~--gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e 685 (1122)
.....+..+.+..+. .+++.|.+|+++..+.. ...+ ....+++-+. .+++.+... +.
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~----------~~~~------~~~~~r~~f~----~a~~~~~~~-is 113 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE----------LKTK------VNLADRSFFI----KAKETKKTV-IS 113 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC----------CSSC------CBCTTSHHHH----HHHHHCSCE-EC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC----------CCCC------CCcchhHHHH----HHHhcCCcE-Ee
Confidence 344556667766665 78999999999876431 0001 1222333333 344322221 10
Q ss_pred EEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCC
Q 001215 686 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGR 765 (1122)
Q Consensus 686 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ 765 (1122)
-.+. ....|. ++..-+.|+++.+|++.|++++..|+......-..+. ... -++++|.+|.
T Consensus 114 ~~~~---~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~~~~~~------------~gg---~~~l~d~~G~ 173 (217)
T 4dah_A 114 DSYS---SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLS------------PDV---YIEVVNQDGK 173 (217)
T ss_dssp CCEE---CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHHHHHHHC------------TTS---CEEEEETTSC
T ss_pred ceEE---cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHHHHHhcC------------CCc---EEEEEcCCCC
Confidence 0111 122344 5666778999999999999999888776544322210 112 5899999999
Q ss_pred eeeeehhH
Q 001215 766 CLEWNDGM 773 (1122)
Q Consensus 766 ii~~N~a~ 773 (1122)
++......
T Consensus 174 ii~~~~~~ 181 (217)
T 4dah_A 174 MIFASGQA 181 (217)
T ss_dssp EEEEESCG
T ss_pred EEEeCCCC
Confidence 88765544
No 225
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=77.01 E-value=5.6 Score=37.35 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCeEEeecCCCCcceeec
Q 001215 220 CDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ 299 (1122)
Q Consensus 220 ~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~r~i~d~~~~~~~~~~ 299 (1122)
++..++-+.+.||+ =|.|- |. -.|+|=+-.+ ..-|+| ..|++..+.....+++.++.+... .++..
T Consensus 4 a~~~AeiI~~~~~~-aV~It--D~---~~ilA~~G~g-~~~~~~-----~~is~~~~~~i~~~k~~~~~~~~~--~~~~~ 69 (123)
T 2w1r_A 4 AKEYADALYDSLGH-SVLIC--DR---DVYIAVSGSS-KKDYLN-----KSISEMLERTMDQRSSVLESDAKS--VQLVN 69 (123)
T ss_dssp HHHHHHHHHHHHCS-EEEEE--CS---SBEEEEESSC-HHHHBT-----CBBCHHHHHHHHHCSCEEESSCEE--EESBT
T ss_pred HHHHHHHHHHHHCC-eEEEE--cC---ccEEEEEecC-hhhcCC-----CccCHHHHHHHHcCCEEEEcCCcc--ccccC
Confidence 45566778888999 77776 22 2355533222 123333 467888999999999998866332 22210
Q ss_pred CCCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceeeEEEeecCCCCCCChhhHHHH
Q 001215 300 DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYAC 379 (1122)
Q Consensus 300 ~~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~~~~~~r~~~ 379 (1122)
|. .+ ...|.+++||+.+ |+.=|.|.=- +..+.++.-.+..+
T Consensus 70 ---------------------~~---~~-~~~s~ii~PI~~~-------------g~viG~i~l~-~~~~~~~~~~~~la 110 (123)
T 2w1r_A 70 ---------------------GI---DE-DMNSYTVGPIVAN-------------GDPIGAVVIF-SKDQTMGEVEHKAV 110 (123)
T ss_dssp ---------------------TC---EE-EESEEEEEEEEET-------------TEEEEEEEEE-ESSSCCCHHHHHHH
T ss_pred ---------------------CC---CC-CeeEEEEEEEEEC-------------CEEEEEEEEE-EcCCCCCHHHHHHH
Confidence 00 01 2488999999988 8999988766 66666899999999
Q ss_pred HHHHHHHHHHHH
Q 001215 380 EFLIQVFGVQVN 391 (1122)
Q Consensus 380 ~~l~~~~~~~~~ 391 (1122)
+-+|++||.||.
T Consensus 111 ~gla~lls~Qme 122 (123)
T 2w1r_A 111 ETAAGFLARQME 122 (123)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhc
Confidence 999999999984
No 226
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=74.28 E-value=37 Score=35.26 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCc--cEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcce-eEE
Q 001215 609 ITNEMVRLIETAAV--PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEER-NVE 685 (1122)
Q Consensus 609 ~e~~l~~lie~a~~--gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~-~~e 685 (1122)
....+..+....+. .++++|.+|+ +..+.. .. ..+ ....+++ .+..++.+.... .+.
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~s~~------~~---~~~------~~~~~r~----~f~~a~~~~~~~~~is 115 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQ-LTYASV------KP---VPA------LDNSDRS----YFRYHRANDDHTLLIT 115 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSB-EEEESS------SS---EEC------CBCTTSH----HHHHHHHCCCCCCEEE
T ss_pred HHHHHHHHHhcCCccceEEEECCCCC-EecCCC------CC---CCC------CCcccHH----HHHHHHhCCCCCeEEC
Confidence 34556667776665 6999999999 544221 00 001 1222333 344444421111 111
Q ss_pred EEEEEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCC
Q 001215 686 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGR 765 (1122)
Q Consensus 686 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ 765 (1122)
-.+. . ...| .|+..-+.|+++.+|++.|++++..|+...... +..+- ..... -++++|.+|.
T Consensus 116 ~p~~-~--~~~g--~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l~~~----------~~~~~-~~~~g--~~~l~d~~G~ 177 (254)
T 3lif_A 116 GPIQ-S--RTSG--VWVFVVSRRLETTDGKFFGVVVATIESEYFSTF----------YKTFD-LGPGG--SISLLHSDGR 177 (254)
T ss_dssp EEEE-C--TTTC--CEEEEEEEEEECTTCCEEEEEEEEECHHHHHHH----------HTTSC-CCTTC--EEEEEETTSB
T ss_pred Ccee-c--CCCC--cEEEEEEeeeeCCCCCEeEEEEEEECHHHHHHH----------HHhcC-cCCCc--EEEEEeCCCc
Confidence 1111 1 1123 356667789999999999999998886533221 11110 01111 4789999999
Q ss_pred eeeeeh
Q 001215 766 CLEWND 771 (1122)
Q Consensus 766 ii~~N~ 771 (1122)
++.-.+
T Consensus 178 ii~~~p 183 (254)
T 3lif_A 178 LLIQWP 183 (254)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 988754
No 227
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=67.52 E-value=58 Score=35.46 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHHHHHhc-CccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEE
Q 001215 610 TNEMVRLIETA-AVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKL 688 (1122)
Q Consensus 610 e~~l~~lie~a-~~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l 688 (1122)
.+.+..+.+.. -..|++.|.+|+++..+... .+...+|.++ .+++ .++.+++++... .+.+
T Consensus 101 ~~~L~~~~~~~~~~~i~v~d~~G~viass~~~------~p~~~~g~d~------~~R~----yf~~Al~g~~~~--~~~~ 162 (305)
T 3e4o_A 101 NRKLEALATSAEAAVIYLIDRSGVAVAASNWQ------EPTSFVGNDY------AFRD----YFRLAVRDGMAE--HFAM 162 (305)
T ss_dssp HHHHHHHHHHSSCSEEEEEETTSBEEEETTTT------STTCCTTCBC------TTSH----HHHHHHHHSEEE--EEEE
T ss_pred HHHHHHHHhccCccEEEEECCCCCEEEeCCCc------CcccccCCCc------cccH----HHHHHHhcCCcE--EEEE
Confidence 34444444433 34799999999998754321 0111123221 2333 344455554332 1111
Q ss_pred EEeCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeee
Q 001215 689 RAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLE 768 (1122)
Q Consensus 689 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~ 768 (1122)
....|. ++..-+.|+++ +|+++|++++..|+....+. +.. ... .++++|.+|.++.
T Consensus 163 ----~~~tg~--~~i~~a~PV~~-~G~viGVv~v~i~l~~l~~~---~~~-----------~~g---~~~l~D~~G~ii~ 218 (305)
T 3e4o_A 163 ----GTVSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDGVEAD---WQA-----------SGK---PAYVTDRRGIVLI 218 (305)
T ss_dssp ----CTTTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHHHHHH---HHH-----------HTS---CEEEECTTCBEEE
T ss_pred ----ecCCCC--EEEEEEEEEcc-CCeEEEEEEEEEcHHHHHHH---Hhc-----------CCc---eEEEEcCCCeEEE
Confidence 122344 34456678886 59999999999998864432 111 122 5899999999886
Q ss_pred eehhH
Q 001215 769 WNDGM 773 (1122)
Q Consensus 769 ~N~a~ 773 (1122)
.+..-
T Consensus 219 ~~~~~ 223 (305)
T 3e4o_A 219 TSLPS 223 (305)
T ss_dssp ESSGG
T ss_pred eCChh
Confidence 65443
No 228
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=66.31 E-value=79 Score=33.53 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHH
Q 001215 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (1122)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r 276 (1122)
....+...+.+++.. .+.+++. ..+..+.+.+|||+++.+-......+..- +...++ .+..|.+..
T Consensus 20 ~~~~l~~~l~~l~~a--~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~------~~~~~i-----~~~yp~~W~ 85 (265)
T 3qp6_A 20 QQWTLLEWIHMAGHI--ETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQ------RMEKVL-----NVSYPSDWL 85 (265)
T ss_dssp HHHHHHHHHHHHTTC--CSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEE------EEEEEE-----ESSCCHHHH
T ss_pred HHHHHHHHHHHHhcC--CCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCcccc------ccccee-----ecCCcHHHH
Confidence 344567889999994 4999998 56778889999999987655443322110 000111 245688899
Q ss_pred HHHHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhH---HHHHHhcCceeEEEEEE-EEeCCccccccccc
Q 001215 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCH---ARYMENMGSIASLVMSV-TINEAEDELDNDQE 352 (1122)
Q Consensus 277 ~l~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h---~~yl~n~~v~a~l~~~i-~~~~~~~~~~~~~~ 352 (1122)
+.|..+....| | | ++.......|+.-+....+..++.. .+..+.+|+...+++|+ .-.
T Consensus 86 ~~Y~~~~y~~~-D----P--vv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~----------- 147 (265)
T 3qp6_A 86 NQYSQENFAQH-D----P--IMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDR----------- 147 (265)
T ss_dssp HHHHHTTGGGT-C----G--GGGCCTTSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSS-----------
T ss_pred HHHHHCcCccc-C----h--HHHHhcCCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcC-----------
Confidence 99998766433 2 2 2221113345444433222234433 45567999999999999 644
Q ss_pred ccCceeeEEEeec
Q 001215 353 QGRKLWGLVVCHH 365 (1122)
Q Consensus 353 ~~~~lWGl~~~h~ 365 (1122)
+...|++....
T Consensus 148 --~g~~g~ls~~~ 158 (265)
T 3qp6_A 148 --NNVGSILSIGG 158 (265)
T ss_dssp --SSEEEEEEEES
T ss_pred --CCCEEEEEeec
Confidence 56778777544
No 229
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=63.61 E-value=30 Score=32.33 Aligned_cols=87 Identities=21% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHHhcC-ccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEE
Q 001215 612 EMVRLIETAA-VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRA 690 (1122)
Q Consensus 612 ~l~~lie~a~-~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~ 690 (1122)
.+..+-+.+. +.|++.|.+|..+.... .+.+|+++.. .+ .+..+++|+.... ..
T Consensus 40 ~~~~~~~~~~~~~i~v~d~~G~~~a~~~----------~~~iG~~~~~---~~-------~~~~al~G~~~~~----~~- 94 (131)
T 1p0z_A 40 LIDPMRSFSDATYITVGDASGQRLYHVN----------PDEIGKSMEG---GD-------SDEALINAKSYVS----VR- 94 (131)
T ss_dssp HHHHHHHHSCCSEEEEEETTSBEEECSS----------GGGTTSBCCS---SC-------CHHHHHHCCCEEE----EE-
T ss_pred HHHHHHHhcCCCEEEEEcCCCcEEEecC----------hhhCCCcccC---CC-------cHHHHhCCCeEEE----EE-
Confidence 3334433333 47899999998876542 2335665421 11 1234455654211 11
Q ss_pred eCCCCCCCeEEEEEEEEEecCCCCCEEEEEEEEEcchh
Q 001215 691 FGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITG 728 (1122)
Q Consensus 691 ~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITe 728 (1122)
.|..-.......|+++.+|+++|++.+..++..
T Consensus 95 -----~g~~g~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 95 -----KGSLGSSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp -----EETTEEEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred -----EccceeeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 122223333445999989999999999888764
No 230
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=48.83 E-value=33 Score=30.55 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHHHHHhcCccEEEecCCCcEEeccHHHHHHcCCCc
Q 001215 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTV 648 (1122)
Q Consensus 612 ~l~~lie~a~~gI~~~D~dG~Iv~~N~~~~~l~G~s~ 648 (1122)
..+.+..++|+++.+-+.+..|+|+|.++.++|-.+.
T Consensus 21 ~iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked 57 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKED 57 (127)
T ss_dssp HHHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCC
T ss_pred hHHhhhcCCCccEEEecccceEEEecchHHHHhhccc
Confidence 3457888999999999999999999999999976443
No 231
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=46.36 E-value=38 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.0
Q ss_pred EEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 841 EALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 841 ~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
+......|+++.+|+++|++++-.++.
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~ 126 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIE 126 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhH
Confidence 444455699998999999999877754
No 232
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=46.17 E-value=11 Score=41.73 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=39.9
Q ss_pred EEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHH
Q 001215 624 ILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKN 670 (1122)
Q Consensus 624 I~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~ 670 (1122)
++++|.+++|+.++..+.+++|.++++++|+++.+++.++....+..
T Consensus 32 Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~~ 78 (327)
T 4e04_A 32 LLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTI 78 (327)
T ss_dssp EEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHHH
T ss_pred EEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHHH
Confidence 45678889999999999999999999999999999987666555443
No 233
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=44.70 E-value=8.9 Score=45.08 Aligned_cols=39 Identities=10% Similarity=-0.013 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeec
Q 001215 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFH 242 (1122)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~ 242 (1122)
.+.+.+|.+ +.|+.+.+.+.+.++++++++|+|.||.++
T Consensus 323 ~~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 323 LALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 445666766 458999999999999999999999999886
No 234
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=44.16 E-value=43 Score=40.13 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEEecccccCccceeEEEEEEEEcCCC---CCChhhhhh-----------hcCCC
Q 001215 1004 QQVLSDFLTNALIFTPAFEGSSIAFRVIPQKERIGKNIHIVHLEFRITHPAP---GIPEKLIHD-----------MFYHS 1069 (1122)
Q Consensus 1004 ~QVL~NLL~NAik~t~~~~g~~I~I~v~~~~~~~~~~~~~~~v~~~V~D~G~---GI~~e~~~~-----------iF~~f 1069 (1122)
..++.++|.||+-|..=..++.|.|.+..-++ .|.|..+|. |++.+.+.. +|...
T Consensus 298 ~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d-----------riei~npG~l~~~~t~e~~~~~~s~RNp~la~~~~~~ 366 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDWNRSEPIDVRWIELDS-----------TLIVRSPGGFPAAITSENVLSNRAARYPALADLYRAL 366 (583)
T ss_dssp HHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT-----------EEEEEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEecCC-----------EEEEEcCCCCCCCCCHHHhcCCCCCCCHHHHHHHHHh
Confidence 37889999999977642234578877664356 366668885 666554332 22222
Q ss_pred CCCCCccchHHHHHHHHHHcCcE-EEEEecCCceEEEEEEEec
Q 001215 1070 QGASREGLGLYISQKLVKLMNGT-VQYIREAERSSFLILIEFP 1111 (1122)
Q Consensus 1070 ~~~~GtGLGL~I~r~ive~~gG~-I~v~s~~gg~tF~~~l~LP 1111 (1122)
.-..+.|-|+.-+.+..+..|.. -.+....+ ..|+++|+.+
T Consensus 367 ~~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~~-~~~~v~l~~~ 408 (583)
T 3lmm_A 367 GLVDKQGVGVDRMYQAMIALGHRPPTIEEIAG-PFVETTLVGG 408 (583)
T ss_dssp TCSCSSHHHHHHHHHHHHHTTCCCCEEEEETT-TEEEEEEECC
T ss_pred CccccCCcHHHHHHHHHHHcCCCCCeEEEcCC-CEEEEEEeCC
Confidence 33456788887777777777764 35544333 4556666543
No 235
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=44.11 E-value=71 Score=30.19 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=46.1
Q ss_pred ccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCCCeEE
Q 001215 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETSGPVI 701 (1122)
Q Consensus 622 ~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~~~~ 701 (1122)
+.|++.|.+|..++... .+.+|+++.. +. ...+++|+... ... ...++. .
T Consensus 57 ~~i~v~d~~G~~~~~~~----------~~~iG~~~~~---~~--------~~~al~G~~~~----~~~----~~~~g~-~ 106 (142)
T 3by8_A 57 LFIVVTDMQSLRYSHPE----------AQRIGQPFKG---DD--------ILKALNGEENV----AIN----RGFLAQ-A 106 (142)
T ss_dssp SEEEEEETTCBBSCCSS----------GGGTTSBCCC---GG--------GTGGGGTCCEE----EEE----CSSSSC-E
T ss_pred cEEEEECCCCcEEECCC----------hHHCCCcCCC---CC--------HHHHhCCCeEE----EEe----cCccEE-E
Confidence 47999999997766532 2356665431 11 22344555321 111 112232 2
Q ss_pred EEEEEEEecCCCCCEEEEEEEEEcchhhHH
Q 001215 702 LVVNACCTQDTKENVIGVCFVGQDITGQKL 731 (1122)
Q Consensus 702 v~v~~~pi~d~~G~v~gvv~v~~DITerK~ 731 (1122)
+. ...|+++.+|+++|++.+..++.....
T Consensus 107 ~~-~~~PV~~~~g~viGvv~vg~~~~~~~~ 135 (142)
T 3by8_A 107 LR-VFTPIYDENHKQIGVVAIGLELSRVTQ 135 (142)
T ss_dssp EE-EEEEEECTTSCEEEEEEEEEEHHHHHH
T ss_pred EE-EEEeEEcCCCCEEEEEEEeEEHHHHHH
Confidence 22 334999888999999999998876543
No 236
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=41.11 E-value=45 Score=33.72 Aligned_cols=31 Identities=6% Similarity=0.035 Sum_probs=24.7
Q ss_pred cCCCEEEEEEEEeeeeCCCCCEEEEEEeeeccc
Q 001215 835 QQGKYVEALLSANKRTNAEGKISGILCFLHVAS 867 (1122)
Q Consensus 835 ~dG~~~~v~~~~~pv~d~~G~i~gvv~~l~DIT 867 (1122)
..|+ ++...+.|+.+.+|++.|+++.-.++.
T Consensus 120 ~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~ 150 (217)
T 4dah_A 120 ITGQ--PIFTICVPVLDSKRNVTDYLVAAIQID 150 (217)
T ss_dssp TTCS--EEEEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred CCCC--EEEEEEEEEECCCCCEEEEEEEEEcHH
Confidence 4565 566678899998999999999877765
No 237
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=38.64 E-value=58 Score=30.83 Aligned_cols=27 Identities=19% Similarity=0.035 Sum_probs=21.2
Q ss_pred EEEEEeeeeCCCCCEEEEEEeeecccH
Q 001215 842 ALLSANKRTNAEGKISGILCFLHVASP 868 (1122)
Q Consensus 842 v~~~~~pv~d~~G~i~gvv~~l~DITe 868 (1122)
......|+++.+|+++|++++-.++..
T Consensus 106 ~~~~~~PV~~~~g~viGvv~vg~~~~~ 132 (142)
T 3by8_A 106 ALRVFTPIYDENHKQIGVVAIGLELSR 132 (142)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred EEEEEEeEEcCCCCEEEEEEEeEEHHH
Confidence 333455999888999999999888764
No 238
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=38.50 E-value=1.8e+02 Score=29.65 Aligned_cols=108 Identities=13% Similarity=0.000 Sum_probs=59.7
Q ss_pred ccEEEecCCCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcceeEEEEEEEeCCCCCCCeEE
Q 001215 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEERNVEIKLRAFGPRETSGPVI 701 (1122)
Q Consensus 622 ~gI~~~D~dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~~dG~~~~ 701 (1122)
..+++.|.+|.++..+... ......|.. ...+ ..+..+++++... +... . ...|. +
T Consensus 73 ~~i~i~d~~G~~~~~~~~~------~~~~~~~~~------~~~r----~~~~~a~~~~~~~---~~~~-~--~~~g~--~ 128 (260)
T 3by9_A 73 ADTYLIDRFGNTIASSNWN------LDRSFIGRN------FAWR----PYFYLSIAGQKSQ---YFAL-G--STSGQ--R 128 (260)
T ss_dssp SEEEEEETTSBEEEETTTT------STTCCTTCB------CTTS----HHHHHHTTTSCEE---EEEE-C--TTTCC--E
T ss_pred ceEEEECCCCCEEEecCCC------CCCCccCCc------cccC----HHHHHHHhCCCce---EEEE-e--cCCCC--E
Confidence 3688999999988754210 000111211 1122 2445566655331 1111 1 22343 4
Q ss_pred EEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeEEecCCCCeeeeeh
Q 001215 702 LVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWND 771 (1122)
Q Consensus 702 v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~~~D~dg~ii~~N~ 771 (1122)
+..-+.|++ .+|++.|++++..|+..... ++..... -++++|.+|.++.-+.
T Consensus 129 ~i~~~~pi~-~~g~~~Gvv~~~i~l~~l~~--------------~~~~~~g---~~~l~d~~G~ii~~~~ 180 (260)
T 3by9_A 129 GYYYAYPVI-YAAEILGVIVVKMDLSAIEQ--------------GWQNKSS---YFVATDDHQVVFMSSQ 180 (260)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEECSHHHHH--------------TCCCSSC---EEEEECTTCBEEEESS
T ss_pred EEEEEEEEc-cCCeEEEEEEEEEeHHHHHH--------------HHhcCCC---cEEEECCCCeEEEcCC
Confidence 555567888 68999999999888664221 1111222 4789999999987654
No 239
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=37.51 E-value=3e+02 Score=26.89 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCc--eEEEEecCCCCCCccCCCCCCCCccHHHHHH
Q 001215 201 AAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHG--EVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (1122)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g--~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l 278 (1122)
+..++.+++... +.+++.+. +..+.+.+|||+++...-.....| +.+. .++ -+..|++..+.
T Consensus 19 l~~~~~~l~~a~--s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~--------~~~-----~~nyP~~W~~~ 82 (182)
T 3qp1_A 19 LLEWIHMAGHIE--TENELKAF-LDQVLSQAPSERLLLALGRLNNQNQIQRLE--------RVL-----NVSYPSDWLDQ 82 (182)
T ss_dssp HHHHHHHHTTCC--SHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSCEEEEE--------EEE-----ESSSCHHHHHH
T ss_pred HHHHHHHHHhcC--CHHHHHHH-HHHHHHhcCCCeEEEEeecCCCcccccchh--------hhh-----hcCCCHHHHHH
Confidence 356888898844 88888775 567888999999977543322212 1110 011 13457899999
Q ss_pred HHhCCeEEeecCCCCcceeecCCCCCCCCcccCccccCCChhH---HHHHHhcCceeEEEEEEEEeCCcccccccccccC
Q 001215 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCH---ARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (1122)
Q Consensus 279 ~~~~~~r~i~d~~~~~~~~~~~~~~~~~ldl~~~~lr~~sp~h---~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~ 355 (1122)
|.++..-.| | |++.......|+.-+....+..++-. .+..+.+|++..+++||--. .+
T Consensus 83 Y~~~~y~~~-D------Pvv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~------------~~ 143 (182)
T 3qp1_A 83 YMKENYAQH-D------PILRIHLGQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASE------------RN 143 (182)
T ss_dssp HHHTTGGGT-C------GGGGSCTTSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEET------------TT
T ss_pred HHHCCCccc-C------cchHhhcCCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecC------------CC
Confidence 999987544 2 23321113445544433334444444 45567899999999999532 14
Q ss_pred ceeeEEEeecC
Q 001215 356 KLWGLVVCHHT 366 (1122)
Q Consensus 356 ~lWGl~~~h~~ 366 (1122)
...|++..-..
T Consensus 144 g~~g~ls~a~~ 154 (182)
T 3qp1_A 144 NIGSILSIAGR 154 (182)
T ss_dssp TEEEEEEEESS
T ss_pred CcEEEEEEecC
Confidence 77888875433
No 240
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=37.47 E-value=3.3e+02 Score=29.31 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeecCCCC--ceEEEEecCCCCCCccCCCCCC-CCccHHHHHHHHhCCeEEeecCCC
Q 001215 216 ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH--GEVVAECRRPDLEPYLGFHYPA-TDIPQASRFLIMKNKVRMICDCLA 292 (1122)
Q Consensus 216 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~--g~vvaE~~~~~~~~~lg~~~pa-~dip~~~r~l~~~~~~r~i~d~~~ 292 (1122)
+..+.+...+-+.+..++.+--+|+.+.+.+ -+.+| -+|--+|- .| =.=.|.....+.+-.|.+.
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A---------~iG~~~~l~~~-DpLVr~alet~~l~~v~~~-- 91 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLA---------TLGEMPALDAD-DLLVRTCLERGELVSVRQE-- 91 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSE---------EESSCCCCCSC-CHHHHHHHHHTSCEECCC---
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceee---------ecCCCCCCCCC-CHHHHHHHHhCCceeechh--
Confidence 5666788888889999999999998876532 12222 22322211 11 1223444444444333331
Q ss_pred CcceeecCCCCCCCCcccCccccCCChhHHHHHHhc-CceeEEEEEEE-EeCCcccccccccccCceeeEEEeecCCCCC
Q 001215 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENM-GSIASLVMSVT-INEAEDELDNDQEQGRKLWGLVVCHHTSPRF 370 (1122)
Q Consensus 293 ~~~~~~~~~~~~~~ldl~~~~lr~~sp~h~~yl~n~-~v~a~l~~~i~-~~~~~~~~~~~~~~~~~lWGl~~~h~~~pr~ 370 (1122)
+.+=.+.+ +.+.=+++|++ .+ |++||+|+-+..-+..
T Consensus 92 ----------------------------~~~~~~~~~~sryL~viPLld~~-------------g~i~Gvl~V~~mpF~a 130 (298)
T 4eu0_A 92 ----------------------------LLERGEQRAHSAAAVCVPLVDTD-------------GRILALLAVEQMPFFV 130 (298)
T ss_dssp ----------------------------------------CCEEEEEECTT-------------SCEEEEEEEEECCGGG
T ss_pred ----------------------------hhhccccccccceEEEEEeecCC-------------CcEEEEEEEecCCccc
Confidence 11100111 34556788986 44 9999999999987777
Q ss_pred CChhhHHHHHHHHHHHHHHHH
Q 001215 371 VPFPLRYACEFLIQVFGVQVN 391 (1122)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~~~ 391 (1122)
+.++.=.....|+..++..+.
T Consensus 131 ~~~~~LqlL~VL~g~~ad~i~ 151 (298)
T 4eu0_A 131 FNERTFSLLAILAGHIADLLQ 151 (298)
T ss_dssp CSHHHHHHHHHHHHHHHHHHG
T ss_pred cCHhHHHHHHHHHHHHHHHHH
Confidence 777665556666665655553
No 241
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=37.13 E-value=1e+02 Score=33.18 Aligned_cols=137 Identities=13% Similarity=-0.038 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcCc--cEEEecCCCcEE-eccHHHHHHcCCCchhhcCCcccccccCCchHHHHHHHHHHHcCCcce
Q 001215 606 LRIITNEMVRLIETAAV--PILAVDASGNVN-GWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLGIEER 682 (1122)
Q Consensus 606 L~~~e~~l~~lie~a~~--gI~~~D~dG~Iv-~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~~l~~~l~g~~~~ 682 (1122)
.+..++.|..+.++.+. .|.++|.+|+.+ .+|......+-.+.. ++....+++-+. .+++.+...
T Consensus 62 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~--------~l~n~~~R~yf~----~a~~~~~~~ 129 (295)
T 3lid_A 62 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSL--------ILRDKSAREYFK----YAQSLDNEQ 129 (295)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECS--------CCCBCTTSHHHH----HHHHSCTTC
T ss_pred HHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCcc--------ccccchhhHHHH----HHhcCCCCc
Confidence 34556678888877665 688999999754 344221111100000 122333444333 334332221
Q ss_pred eEEEEEEEeCCCCCC----CeEEEEEEEEEecCCCCCEEEEEEEEEcchhhHHHHHHHHhHhhhhhhhhcCCCCCCCCeE
Q 001215 683 NVEIKLRAFGPRETS----GPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIF 758 (1122)
Q Consensus 683 ~~e~~l~~~~~~~dG----~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~aE~~L~~se~~l~~l~e~~~~li~~I~ 758 (1122)
.+-..+... ..+| ...++..-+.|+. .+|++.|++.+-.|+..... . +..... ... .++
T Consensus 130 ~~~s~~~~~--~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~~l~~---~-------~~~~~~-~~~---~~~ 192 (295)
T 3lid_A 130 ISAWGIELE--RDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEYLSS---L-------LNYSPV-RDF---HIE 192 (295)
T ss_dssp CEECCCEEC--EETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHHHHH---H-------HSEETT-TTE---ECE
T ss_pred EEEeCceec--ccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHHHHHH---H-------Hhhccc-CCC---cEE
Confidence 111111100 0112 2245666677886 68999999999888665322 1 111011 111 489
Q ss_pred EecCCCCeeeeeh
Q 001215 759 MTDEDGRCLEWND 771 (1122)
Q Consensus 759 ~~D~dg~ii~~N~ 771 (1122)
++|.+|.++.-+.
T Consensus 193 l~d~~G~~l~~~~ 205 (295)
T 3lid_A 193 LVKHKGFYIASPD 205 (295)
T ss_dssp EEETTSBEEECSC
T ss_pred EEcCCCCEEecCC
Confidence 9999999876553
No 242
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=36.65 E-value=1.5e+02 Score=31.20 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCC
Q 001215 201 AAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDE 245 (1122)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~ 245 (1122)
..++..+|=. +.+++++++++.+++++.++.|.|-+.=|++.+
T Consensus 105 ~~~l~l~LL~--a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~ 147 (252)
T 3e98_A 105 TRRLVLDLLD--ATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSS 147 (252)
T ss_dssp HHHHHHHHHH--CCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSC
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 3445555555 459999999999999999999999999887754
No 243
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=35.87 E-value=20 Score=39.66 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=38.8
Q ss_pred EEEecC-CCcEEeccHHHHHHcCCCchhhcCCcccccccCCchHHHHH
Q 001215 624 ILAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKN 670 (1122)
Q Consensus 624 I~~~D~-dG~Iv~~N~~~~~l~G~s~eeliG~~~~dl~~~~~~~~~~~ 670 (1122)
++++|. +++|+.++..+.+++|.++++++|+++.+++.+ ....+..
T Consensus 55 LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~ 101 (343)
T 3s7o_A 55 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQA 101 (343)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHH
T ss_pred EEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHH
Confidence 455775 799999999999999999999999999999987 6655443
No 244
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=33.12 E-value=2.6e+02 Score=24.88 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=29.8
Q ss_pred hhhhhhcCCCCCCCCeEEecCCCCeeeeehhHHHhcCCC
Q 001215 742 DYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLK 780 (1122)
Q Consensus 742 ~l~~l~e~~~~li~~I~~~D~dg~ii~~N~a~~~l~G~~ 780 (1122)
..+.+..+.|. ++.+.+.+..|++.|.+|.++|--+
T Consensus 21 ~iq~iY~nSPV---pVCVRNq~RkilYaN~aF~elF~Ke 56 (127)
T 4ew7_A 21 SIQDIYKNSPV---PVCVRNQSRKIIYANGAFIELFSKE 56 (127)
T ss_dssp HHHHHHTTCSS---CEEEECTTSCEEEECHHHHHHTTSC
T ss_pred hHHhhhcCCCc---cEEEecccceEEEecchHHHHhhcc
Confidence 34566677777 8999999999999999999997544
No 245
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.11 E-value=4.1e+02 Score=27.05 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCe
Q 001215 206 SRLQSLPSGN-ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (1122)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~ 284 (1122)
.++.+.. + .+++.+.. +.+.+.+|||++..+.+.. + ..++ .+..|....+.|..+..
T Consensus 11 ~~l~~a~--~~~~~l~~~l-~~~~~~~gf~~~~y~~~~~------------~--~~~~-----~~~~p~~w~~~Y~~~~y 68 (236)
T 2q0o_A 11 IDMLEAA--QDGHMIKIAL-RSFAHSCGYDRFAYLQKDG------------T--QVRT-----FHSYPGPWESIYLGSDY 68 (236)
T ss_dssp HHHHHHC--CSHHHHHHHH-HHHHHHHTCCEEEEEEEET------------T--EEEE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHHcc--CcHHHHHHHH-HHHHHHhCCCeEEEEecCC------------C--ceEE-----EeCCCHHHHHHHHHCCC
Confidence 5565533 6 77777765 5566669999998774210 1 1111 23456788888887764
Q ss_pred EEeecCCCCcceeecC-CCCCCCCcccCccccC-CCh---hHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceee
Q 001215 285 RMICDCLAPPVKVIQD-KKLDQPLSLCGSTLRA-PHG---CHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359 (1122)
Q Consensus 285 r~i~d~~~~~~~~~~~-~~~~~~ldl~~~~lr~-~sp---~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWG 359 (1122)
..+ | | ++.. .....|..-+....+. .++ -..++.+.+|+...+++|+.-. +..+|
T Consensus 69 ~~~-D----P--v~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~-------------~~~~g 128 (236)
T 2q0o_A 69 FNI-D----P--VLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGS-------------YGSAM 128 (236)
T ss_dssp GGT-C----H--HHHHHHHCCSCEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECG-------------GGCEE
T ss_pred ccc-C----H--HHHHHhCCCCCEEecCcccccccCHHHHHHHHHHHHcCCCceEEEEEEcC-------------CCCeE
Confidence 322 2 2 2210 0111222222222221 122 3345677999999999999754 56778
Q ss_pred EEEee
Q 001215 360 LVVCH 364 (1122)
Q Consensus 360 l~~~h 364 (1122)
++...
T Consensus 129 ~ls~~ 133 (236)
T 2q0o_A 129 MLTFA 133 (236)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77643
No 246
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=22.50 E-value=75 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHhh---cCCCEEEEEeecC
Q 001215 215 NISLLCDVLVNEVSDL---TGYDRVMVYKFHE 243 (1122)
Q Consensus 215 ~~~~~~~~~~~~vr~~---~~~dRv~iy~f~~ 243 (1122)
|.+.+...+|+||..+ +|++|||+|-|..
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAH 83 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFAH 83 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4467777777777665 6899999999865
No 247
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.63 E-value=3.6e+02 Score=27.44 Aligned_cols=116 Identities=9% Similarity=0.175 Sum_probs=66.3
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHHhCCe
Q 001215 206 SRLQSLPSGN-ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (1122)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~~~~~ 284 (1122)
.++++.. + .+++.+. +..+.+.+|||++..+.+.. + +.++ .+..|....+.|..+..
T Consensus 9 ~~l~~a~--~~~~~l~~~-l~~~~~~~gf~~~~y~~~~~------------~--~~~~-----~~~~p~~w~~~Y~~~~y 66 (234)
T 1l3l_A 9 TDLAAIE--GDECILKTG-LADIADHFGFTGYAYLHIQH------------R--HITA-----VTNYHRQWQSTYFDKKF 66 (234)
T ss_dssp HHHTTCC--SCHHHHHHH-HHHHHHHTTCSEEEEEEEET------------T--EEEE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHHcc--CcHHHHHHH-HHHHHHHcCCCeEEEEecCC------------C--CeEE-----EcCCCHHHHHHHHHCCC
Confidence 6777743 6 7777764 55677899999998873111 1 1122 23456788888887664
Q ss_pred EEeecCCCCcceeecC-CCCCCCCcccCccccC-CC---hhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceee
Q 001215 285 RMICDCLAPPVKVIQD-KKLDQPLSLCGSTLRA-PH---GCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359 (1122)
Q Consensus 285 r~i~d~~~~~~~~~~~-~~~~~~ldl~~~~lr~-~s---p~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWG 359 (1122)
..+ | |++.. .....|..-+...... .+ +...++.+.+|+...+++|+.-. +..+|
T Consensus 67 ~~~-D------Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~-------------~~~~g 126 (234)
T 1l3l_A 67 EAL-D------PVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTA-------------NGFMS 126 (234)
T ss_dssp GGT-C------HHHHHHHHCCSCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECG-------------GGCEE
T ss_pred ccc-C------cHHHHhhCCCCCeeeCccccccccchHHHHHHHHHHHcCCCccEEEEEecC-------------CCCEE
Confidence 322 2 22210 0112233322222221 11 23345567999999999999754 66788
Q ss_pred EEEe
Q 001215 360 LVVC 363 (1122)
Q Consensus 360 l~~~ 363 (1122)
++..
T Consensus 127 ~ls~ 130 (234)
T 1l3l_A 127 MFTM 130 (234)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 248
>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing, transcription; HET: HTF; NMR {Escherichia coli}
Probab=21.33 E-value=5.4e+02 Score=24.52 Aligned_cols=125 Identities=13% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCceEEEEecCCCCCCccCCCCCCCCccHHHHHHHH
Q 001215 201 AAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIM 280 (1122)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~pa~dip~~~r~l~~ 280 (1122)
....+..+++.. +.+++.+.+ ..+.+-+|||+++..-..+...+ .+ ..++ -+..|++-.+.|.
T Consensus 10 ~~~~l~~l~~a~--~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~~-----~~~yp~~W~~~Y~ 72 (171)
T 2avx_A 10 RRTMLLRFQRME--TAEEVYHEI-ELQAQQLEYDYYSLCVRHPVPFT-------RP--KVAF-----YTNYPEAWVSYYQ 72 (171)
T ss_dssp HHHHHHHHHHTC--SHHHHHHHH-HHHHHTTTCSCEEEEEEECCTTS-------CC--EEEE-----EECCCHHHHHHHH
T ss_pred HHHHHHHHHhCC--CHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--cEeh-----hcCCCHHHHHHHH
Confidence 355678888844 888888664 45667899999987643321111 00 1111 2445899999999
Q ss_pred hCCeEEeecCCCCcceeecC-CCCCCCCcccCccccCCChhHHHHHHhcCceeEEEEEEEEeCCcccccccccccCceee
Q 001215 281 KNKVRMICDCLAPPVKVIQD-KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359 (1122)
Q Consensus 281 ~~~~r~i~d~~~~~~~~~~~-~~~~~~ldl~~~~lr~~sp~h~~yl~n~~v~a~l~~~i~~~~~~~~~~~~~~~~~~lWG 359 (1122)
++..-.| | |++.. .....|+.=+.... .-.+--.+..+.+|++..+++||.-. +..+|
T Consensus 73 ~~~y~~~-D------Pvv~~~~~~~~p~~W~~~~~-~~~~~~~~~a~~~Gl~~G~t~p~~~~-------------~g~~~ 131 (171)
T 2avx_A 73 AKNFLAI-D------PVLNPENFSQGHLMWNDDLF-SEAQPLWEAARAHGLRRGVTQYLMLP-------------ERALG 131 (171)
T ss_dssp HTTGGGT-C------GGGCTTTCTTSEEECCTTTT-SSCHHHHHHHHHHTCCEEEEEEECCT-------------TCCEE
T ss_pred HCCCeEe-C------hhhhhhcCCCCCEecCchhc-cchHHHHHHHHHcCCCcEEEEEeecC-------------CCCEE
Confidence 9986444 2 23321 12223443332221 11234456789999999999999533 56788
Q ss_pred EEEe
Q 001215 360 LVVC 363 (1122)
Q Consensus 360 l~~~ 363 (1122)
++.-
T Consensus 132 ~ls~ 135 (171)
T 2avx_A 132 FLSF 135 (171)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
Done!