BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001216
(1122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SQI2|GIGAN_ARATH Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2
Length = 1173
Score = 1648 bits (4268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1125 (75%), Positives = 951/1125 (84%), Gaps = 16/1125 (1%)
Query: 8 LVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASF 67
+ +L+R YP E+RL DDVLAMFVLHHPEHGHAV LPIISC+IDG+LVY K + PFASF
Sbjct: 53 IAELVRHQYPSTEKRLLDDVLAMFVLHHPEHGHAVILPIISCLIDGSLVYSKEAHPFASF 112
Query: 68 VSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNSEFERSSSSSHATTSDSRD 127
+SLVCP+SEN+YSEQWALAC EILRILTHYNRPIYKTEQQN + ER+ S ATTS S
Sbjct: 113 ISLVCPSSENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSK-ATTSGSPT 171
Query: 128 GELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 187
E Q ERKPLRPLSPWI+DILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA
Sbjct: 172 SEPKAGSPTQHERKPLRPLSPWISDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 231
Query: 188 SSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTAL 247
S RGSGKHPQLM STPRWAVANGAGVILSVCDDE+ARYETATLTA AVPALLLPP TT+L
Sbjct: 232 S-RGSGKHPQLMPSTPRWAVANGAGVILSVCDDEVARYETATLTAVAVPALLLPPPTTSL 290
Query: 248 DEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 307
DEHLVAGLPALEPYARLFHRYYA ATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR
Sbjct: 291 DEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 350
Query: 308 AAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQV 367
AAE+YA+G++LPRNWMHLHFLRAIG+AMSMRAG+AADAAAALLFRILSQPALLFPPL QV
Sbjct: 351 AAEDYASGVRLPRNWMHLHFLRAIGIAMSMRAGVAADAAAALLFRILSQPALLFPPLSQV 410
Query: 368 DGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAY 427
+GVE+QH P+GGY S YRKQIEVPAAEATIEATAQGIAS+LCAHGPEVEWRICTIWEAAY
Sbjct: 411 EGVEIQHAPIGGYSSNYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAY 470
Query: 428 GLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 487
GLIPL+SSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE
Sbjct: 471 GLIPLNSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 530
Query: 488 AIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLF 547
I+ RTFPPESS E TR+AR SA+KNLA++ELR MVH+LFLESCA VELASRLLF
Sbjct: 531 TILSRTFPPESSRELTRKARSSFTTRSATKNLAMSELRAMVHALFLESCAGVELASRLLF 590
Query: 548 IVLTVCVSHEAQSNGSKKPRGE-----ENYFPDESTEDLQK-DLRTRKVKRQGPVAAFDS 601
+VLTVCVSHEAQS+GSK+PR E EN ++ + Q + ++R VK QGPVAAFDS
Sbjct: 591 VVLTVCVSHEAQSSGSKRPRSEYASTTENIEANQPVSNNQTANRKSRNVKGQGPVAAFDS 650
Query: 602 YVLAAVCALACELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHR 661
YVLAAVCALACE+QL P++S GN S S A + KP KING+S E + I+SAI HT R
Sbjct: 651 YVLAAVCALACEVQLYPMISGGGNFSNSAVAGTITKPVKINGSSKEYGAGIDSAISHTRR 710
Query: 662 ILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWD 721
IL ILEALFSLKPSS+GT W YSS+EIVAAAMVAAH+SELFRRSKA HALS LMRCKWD
Sbjct: 711 ILAILEALFSLKPSSVGTPWSYSSSEIVAAAMVAAHISELFRRSKALTHALSGLMRCKWD 770
Query: 722 NEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGG 781
EI+ RA+SLYNLID+H K VASIV+KAEPL+A+L + P+ +DS+ C + ++ + CA
Sbjct: 771 KEIHKRASSLYNLIDVHSKVVASIVDKAEPLEAYLKNTPVQKDSVTCLNWKQENTCASTT 830
Query: 782 YFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDR 841
F+ S+S E + + + A SDE SG KGI FL+DASDLANFLT DR
Sbjct: 831 CFDTAVTSASRTEMNPRG----NHKYARHSDEGSGRPSEKGIKDFLLDASDLANFLTADR 886
Query: 842 HIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDAL 901
GF C Q LLRSVLAEK EL FSVVSLLW+KLIAAPE QP+AESTSAQQGWRQVVDAL
Sbjct: 887 LAGFYCGTQKLLRSVLAEKPELSFSVVSLLWHKLIAAPEIQPTAESTSAQQGWRQVVDAL 946
Query: 902 CNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPES 961
CNVVSA+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PES
Sbjct: 947 CNVVSATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPES 1006
Query: 962 LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNL 1021
LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNL
Sbjct: 1007 LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNL 1066
Query: 1022 LKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYF 1077
LKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS + E+NG++ S +F
Sbjct: 1067 LKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFF 1126
Query: 1078 NIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 1122
N +I+W++DI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct: 1127 NAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
>sp|Q9AWL7|GIGAN_ORYSJ Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2
Length = 1160
Score = 1527 bits (3953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/1119 (70%), Positives = 917/1119 (81%), Gaps = 17/1119 (1%)
Query: 8 LVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASF 67
+ QLI+S YP KE+RL D+VLA FVLHHPEHGHAV PI+S IIDGTL YD++ PF SF
Sbjct: 53 IAQLIQSCYPSKEKRLVDEVLATFVLHHPEHGHAVVHPILSRIIDGTLSYDRNGFPFMSF 112
Query: 68 VSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNSEFERSSSSSHATTSDSRD 127
+SL SE EYSEQWALAC EILR+LTHYNRPI+K + Q+SE E SS+S A++ +S +
Sbjct: 113 ISLFSHTSEKEYSEQWALACGEILRVLTHYNRPIFKVDHQHSEAECSSTSDQASSCESME 172
Query: 128 GELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAG-ELKPPTI 186
+ P + +RKPLRPLSPWITDILLAAPLGIRSDYFRWC GVMGKYAAG ELKPPT
Sbjct: 173 KRANGSPRNEPDRKPLRPLSPWITDILLAAPLGIRSDYFRWCGGVMGKYAAGGELKPPTT 232
Query: 187 ASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTA 246
A SRGSGKHPQLM STPRWAVANGAGVILSVCD+E+ARYETA LTAAAVPALLLPP TT
Sbjct: 233 AYSRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETANLTAAAVPALLLPPPTTP 292
Query: 247 LDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELL 306
LDEHLVAGLP LEPYARLFHRYYA ATPSATQRLL GLLEAPPSWAPDALDAAVQLVELL
Sbjct: 293 LDEHLVAGLPPLEPYARLFHRYYAIATPSATQRLLFGLLEAPPSWAPDALDAAVQLVELL 352
Query: 307 RAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQ 366
RAAE+Y +G++LP+NWMHLHFLRAIG AMSMRAGIAAD +AALLFRILSQP LLFPPLR
Sbjct: 353 RAAEDYDSGMRLPKNWMHLHFLRAIGTAMSMRAGIAADTSAALLFRILSQPTLLFPPLRH 412
Query: 367 VDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAA 426
+GVE+ HEPLGGY+S Y++Q+EVPA+EATI+ATAQGIAS+LCAHGP+VEWRICTIWEAA
Sbjct: 413 AEGVELHHEPLGGYVSSYKRQLEVPASEATIDATAQGIASMLCAHGPDVEWRICTIWEAA 472
Query: 427 YGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATV 486
YGL+PLSSSAVDLPEI+VA PLQPP LSW+LY+PLLKV EYLPRGSPSEACLM+IFVATV
Sbjct: 473 YGLLPLSSSAVDLPEIVVAAPLQPPTLSWSLYLPLLKVFEYLPRGSPSEACLMRIFVATV 532
Query: 487 EAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLL 546
EAI++RTFP E+S E +R+ R S SKNLAVAELRTM+HSLF+ESCAS++LASRLL
Sbjct: 533 EAILRRTFPSETS-EQSRKPR------SQSKNLAVAELRTMIHSLFVESCASMDLASRLL 585
Query: 547 FIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQ-KDLRTRKVKRQGPVAAFDSYVLA 605
F+VLTVCVSH+A GSK+P G +N+ +E T D + + R R KRQGPVA FDSYVLA
Sbjct: 586 FVVLTVCVSHQALPGGSKRPTGSDNHSSEEVTNDSRLTNGRNRCKKRQGPVATFDSYVLA 645
Query: 606 AVCALACELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTI 665
AVCAL+CELQL P +S++GNHS KD+ + P K G SNE +SI SAI HT RIL I
Sbjct: 646 AVCALSCELQLFPFISKNGNHSNLKDSIKIVIPGKTTGISNELHNSISSAILHTRRILGI 705
Query: 666 LEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIY 725
LEALFSLKPSS+GTSW YSSNEIVAAAMVAAHVSELFRRS+ C++ALS L +CKWD EI
Sbjct: 706 LEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSRPCLNALSALKQCKWDAEIS 765
Query: 726 SRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNP 785
+RA+SLY+LID+H K V SIVNKAEPL+AHL P+ +D +K + GG
Sbjct: 766 TRASSLYHLIDLHGKTVTSIVNKAEPLEAHLTLTPVKKDEPPIE--EKNINSSDGGALEK 823
Query: 786 ENASSSHCEAS-DQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIG 844
++AS SH + +P + + D +S + GK IAS V+ASDLANFLTMDR+ G
Sbjct: 824 KDASRSHRKNGFARPLLKCAEDVILNGDVASTS--GKAIASLQVEASDLANFLTMDRNGG 881
Query: 845 FNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNV 904
+ S Q LLRSVL+EKQELCFSVVSLLW KLIA+PE Q SAESTSA QGWR+VVDALC++
Sbjct: 882 YRGS-QTLLRSVLSEKQELCFSVVSLLWQKLIASPEMQMSAESTSAHQGWRKVVDALCDI 940
Query: 905 VSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVI 964
VSASPTKA+ A+VLQAE++LQPWIA+DD+QGQKMWR+NQRIVKLI ELMR +DSPE+LVI
Sbjct: 941 VSASPTKASAAIVLQAEKDLQPWIARDDEQGQKMWRVNQRIVKLIAELMRNHDSPEALVI 1000
Query: 965 LASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKC 1024
LASASDLLLRATDGMLVDGEACTLPQLELLE TARA+ I+ WG SG+++ADGLSNLLKC
Sbjct: 1001 LASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKC 1060
Query: 1025 RLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAI 1082
RL TIRCLSHPSAHVRALS SVLRD L++ S+ I+ RNGI + I
Sbjct: 1061 RLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASII 1120
Query: 1083 NWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 1121
NWQ+D+E+C+ WEAHSR ATG+ + FL AAKELGC ++
Sbjct: 1121 NWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,727,993
Number of Sequences: 539616
Number of extensions: 16604321
Number of successful extensions: 40178
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40165
Number of HSP's gapped (non-prelim): 4
length of query: 1122
length of database: 191,569,459
effective HSP length: 128
effective length of query: 994
effective length of database: 122,498,611
effective search space: 121763619334
effective search space used: 121763619334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)