Query 001217
Match_columns 1122
No_of_seqs 318 out of 934
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5183 SSM4 Protein involved 100.0 6.2E-80 1.3E-84 712.7 34.6 944 68-1082 11-1168(1175)
2 PHA02862 5L protein; Provision 99.7 3.4E-17 7.5E-22 161.0 5.0 65 69-143 2-66 (156)
3 PHA02825 LAP/PHD finger-like p 99.6 1.5E-15 3.3E-20 152.6 4.9 63 64-129 3-65 (162)
4 smart00744 RINGv The RING-vari 99.5 4E-15 8.6E-20 124.0 3.1 49 71-119 1-49 (49)
5 PF12906 RINGv: RING-variant d 99.4 1.5E-14 3.3E-19 119.5 0.8 47 72-118 1-47 (47)
6 KOG3053 Uncharacterized conser 99.4 3.6E-13 7.8E-18 143.5 5.6 61 64-124 15-83 (293)
7 KOG1609 Protein involved in mR 99.0 2.2E-10 4.7E-15 129.4 4.6 68 64-131 73-142 (323)
8 KOG4628 Predicted E3 ubiquitin 97.7 2.4E-05 5.2E-10 89.4 2.9 49 70-124 230-279 (348)
9 PF12861 zf-Apc11: Anaphase-pr 97.5 0.00012 2.5E-09 68.0 4.5 53 69-125 21-84 (85)
10 PF13639 zf-RING_2: Ring finge 97.4 4.8E-05 1E-09 62.0 0.3 43 70-119 1-44 (44)
11 KOG1493 Anaphase-promoting com 97.1 0.00046 1E-08 62.2 3.2 52 70-125 21-83 (84)
12 PHA02929 N1R/p28-like protein; 96.9 0.00069 1.5E-08 74.5 4.1 52 66-124 171-228 (238)
13 COG5540 RING-finger-containing 96.9 0.00058 1.3E-08 75.7 3.0 51 65-122 319-371 (374)
14 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00083 1.8E-08 76.2 3.9 52 66-124 284-346 (491)
15 PF12678 zf-rbx1: RING-H2 zinc 96.7 0.00075 1.6E-08 61.3 1.9 44 69-119 19-73 (73)
16 KOG1609 Protein involved in mR 96.5 0.0014 3.1E-08 74.3 2.7 225 821-1072 96-323 (323)
17 PF11793 FANCL_C: FANCL C-term 96.3 0.0016 3.4E-08 58.8 1.2 57 69-125 2-68 (70)
18 KOG0823 Predicted E3 ubiquitin 96.1 0.0077 1.7E-07 65.4 5.6 59 65-130 43-105 (230)
19 PLN03208 E3 ubiquitin-protein 96.0 0.0053 1.2E-07 65.4 3.7 56 67-129 16-88 (193)
20 COG5194 APC11 Component of SCF 95.9 0.0052 1.1E-07 56.1 2.6 28 96-125 56-83 (88)
21 COG5219 Uncharacterized conser 95.7 0.0025 5.5E-08 79.0 -0.2 60 64-124 1464-1524(1525)
22 PHA02926 zinc finger-like prot 95.7 0.0095 2.1E-07 64.3 3.9 55 65-124 166-231 (242)
23 cd00162 RING RING-finger (Real 95.5 0.011 2.4E-07 46.7 2.7 43 71-121 1-44 (45)
24 KOG0802 E3 ubiquitin ligase [P 95.2 0.011 2.3E-07 72.9 2.8 54 65-125 287-343 (543)
25 PF13920 zf-C3HC4_3: Zinc fing 95.1 0.01 2.2E-07 49.7 1.6 46 69-123 2-48 (50)
26 smart00184 RING Ring finger. E 94.7 0.026 5.7E-07 42.9 2.6 39 72-118 1-39 (39)
27 KOG0828 Predicted E3 ubiquitin 93.5 0.047 1E-06 64.5 2.8 52 65-122 567-633 (636)
28 KOG0317 Predicted E3 ubiquitin 93.5 0.08 1.7E-06 59.3 4.4 53 64-125 234-286 (293)
29 PF00097 zf-C3HC4: Zinc finger 93.4 0.046 9.9E-07 43.6 1.8 40 72-118 1-41 (41)
30 smart00504 Ubox Modified RING 92.3 0.12 2.5E-06 44.8 3.0 47 70-125 2-48 (63)
31 KOG0827 Predicted E3 ubiquitin 92.1 0.095 2.1E-06 60.5 2.8 45 70-119 5-52 (465)
32 TIGR00599 rad18 DNA repair pro 91.6 0.29 6.3E-06 58.0 6.1 50 66-124 23-72 (397)
33 KOG1734 Predicted RING-contain 90.6 0.3 6.4E-06 54.2 4.5 59 67-128 222-286 (328)
34 KOG4265 Predicted E3 ubiquitin 90.4 0.19 4.1E-06 58.0 2.9 47 65-123 286-336 (349)
35 PF13923 zf-C3HC4_2: Zinc fing 90.3 0.15 3.3E-06 40.5 1.5 38 72-118 1-39 (39)
36 KOG0804 Cytoplasmic Zn-finger 89.0 0.14 3.1E-06 60.2 0.6 50 67-123 173-222 (493)
37 KOG0825 PHD Zn-finger protein 87.9 0.66 1.4E-05 57.8 5.1 28 96-125 146-173 (1134)
38 PF14634 zf-RING_5: zinc-RING 87.8 0.4 8.6E-06 39.2 2.3 43 71-120 1-44 (44)
39 PF14570 zf-RING_4: RING/Ubox 87.1 0.42 9.1E-06 40.3 2.1 46 72-123 1-48 (48)
40 COG5236 Uncharacterized conser 86.2 1.2 2.5E-05 51.1 5.6 54 64-124 56-109 (493)
41 KOG1645 RING-finger-containing 85.2 0.52 1.1E-05 55.1 2.4 54 67-124 2-57 (463)
42 KOG2930 SCF ubiquitin ligase, 81.7 0.85 1.8E-05 44.0 1.8 29 96-126 83-111 (114)
43 COG5175 MOT2 Transcriptional r 81.5 1.1 2.4E-05 51.1 2.9 54 66-125 11-66 (480)
44 PLN02189 cellulose synthase 74.1 2.1 4.5E-05 55.9 2.7 54 67-124 32-88 (1040)
45 TIGR00570 cdk7 CDK-activating 72.9 3.6 7.8E-05 47.4 3.9 51 69-125 3-56 (309)
46 PF05883 Baculo_RING: Baculovi 72.8 1.2 2.7E-05 45.2 0.2 43 67-109 24-68 (134)
47 PLN02436 cellulose synthase A 68.9 3.2 7E-05 54.3 2.7 53 68-124 35-90 (1094)
48 KOG1785 Tyrosine kinase negati 68.7 2.3 4.9E-05 49.7 1.2 52 67-125 367-418 (563)
49 PF13445 zf-RING_UBOX: RING-ty 68.0 2.7 5.8E-05 34.7 1.2 40 72-116 1-43 (43)
50 KOG1428 Inhibitor of type V ad 67.9 3.7 8.1E-05 54.3 2.9 56 64-123 3481-3544(3738)
51 PF15227 zf-C3HC4_4: zinc fing 67.0 3 6.5E-05 34.0 1.2 40 72-118 1-42 (42)
52 KOG0956 PHD finger protein AF1 65.6 3.4 7.4E-05 51.3 1.9 61 70-131 6-81 (900)
53 KOG1973 Chromatin remodeling p 64.7 7 0.00015 44.5 4.1 48 73-121 220-268 (274)
54 KOG0320 Predicted E3 ubiquitin 62.8 8.1 0.00018 41.1 3.8 49 67-122 129-177 (187)
55 KOG4445 Uncharacterized conser 61.5 3.6 7.8E-05 46.7 1.0 57 64-125 110-188 (368)
56 PF07800 DUF1644: Protein of u 61.5 11 0.00024 39.5 4.3 40 68-109 1-48 (162)
57 PF04564 U-box: U-box domain; 60.6 4.5 9.8E-05 36.7 1.3 49 69-125 4-52 (73)
58 PLN02195 cellulose synthase A 60.5 6.4 0.00014 51.4 3.1 55 66-123 3-59 (977)
59 KOG0287 Postreplication repair 60.2 7.3 0.00016 44.9 3.1 47 68-123 22-68 (442)
60 PLN02638 cellulose synthase A 59.9 6.4 0.00014 51.8 2.9 55 67-124 15-71 (1079)
61 COG5432 RAD18 RING-finger-cont 59.8 4.1 8.8E-05 46.0 1.0 50 67-125 23-72 (391)
62 KOG0802 E3 ubiquitin ligase [P 59.8 6.4 0.00014 49.0 2.9 50 64-126 474-523 (543)
63 PF05290 Baculo_IE-1: Baculovi 59.3 6.7 0.00014 39.9 2.3 56 68-125 79-134 (140)
64 KOG2164 Predicted E3 ubiquitin 58.2 9.6 0.00021 46.4 3.8 57 69-132 186-248 (513)
65 KOG1002 Nucleotide excision re 56.7 5.4 0.00012 48.2 1.4 55 64-125 531-588 (791)
66 KOG4692 Predicted E3 ubiquitin 53.9 6.2 0.00013 45.6 1.2 51 64-123 417-467 (489)
67 COG5574 PEX10 RING-finger-cont 53.6 9.5 0.00021 42.9 2.6 50 69-126 215-265 (271)
68 KOG3268 Predicted E3 ubiquitin 53.5 12 0.00025 39.7 3.1 60 66-125 162-230 (234)
69 PF10272 Tmpp129: Putative tra 53.1 12 0.00026 44.2 3.4 38 86-126 306-354 (358)
70 KOG1952 Transcription factor N 52.9 19 0.00041 46.2 5.3 55 67-124 189-248 (950)
71 PLN02400 cellulose synthase 48.9 10 0.00022 50.2 2.1 54 68-124 35-90 (1085)
72 KOG0801 Predicted E3 ubiquitin 46.1 11 0.00024 39.3 1.6 26 66-91 174-200 (205)
73 PLN02915 cellulose synthase A 43.5 17 0.00037 48.0 3.0 54 68-124 14-69 (1044)
74 KOG2177 Predicted E3 ubiquitin 43.3 11 0.00024 41.1 1.1 47 65-120 9-55 (386)
75 PF08746 zf-RING-like: RING-li 40.1 16 0.00034 30.2 1.3 22 97-118 22-43 (43)
76 KOG1039 Predicted E3 ubiquitin 38.2 22 0.00048 41.8 2.6 53 67-124 159-222 (344)
77 KOG3005 GIY-YIG type nuclease 37.9 33 0.00071 38.9 3.7 54 70-123 183-243 (276)
78 KOG0824 Predicted E3 ubiquitin 37.4 23 0.00049 40.7 2.4 46 69-124 7-54 (324)
79 PF14569 zf-UDP: Zinc-binding 37.1 36 0.00077 31.8 3.1 56 67-125 7-64 (80)
80 PF10367 Vps39_2: Vacuolar sor 36.5 12 0.00026 35.6 0.0 34 67-105 76-109 (109)
81 KOG2034 Vacuolar sorting prote 36.5 15 0.00032 47.4 0.9 38 66-109 814-852 (911)
82 KOG0956 PHD finger protein AF1 35.5 17 0.00038 45.4 1.2 57 68-124 116-183 (900)
83 KOG4172 Predicted E3 ubiquitin 33.5 15 0.00033 31.9 0.2 42 70-122 8-53 (62)
84 KOG0826 Predicted E3 ubiquitin 33.4 38 0.00082 39.4 3.3 52 64-123 295-346 (357)
85 KOG2660 Locus-specific chromos 33.0 28 0.0006 40.4 2.2 52 66-125 12-63 (331)
86 KOG1962 B-cell receptor-associ 31.7 4.2E+02 0.0091 29.5 10.8 78 534-623 5-83 (216)
87 KOG3899 Uncharacterized conser 31.1 30 0.00066 39.4 2.1 37 88-127 322-369 (381)
88 smart00249 PHD PHD zinc finger 30.8 17 0.00038 28.7 0.1 30 71-104 1-30 (47)
89 PF05529 Bap31: B-cell recepto 26.9 5.3E+02 0.012 27.6 10.6 16 534-549 8-23 (192)
90 COG5034 TNG2 Chromatin remodel 26.8 38 0.00083 38.1 1.9 28 90-121 241-270 (271)
91 KOG4159 Predicted E3 ubiquitin 25.6 46 0.001 40.0 2.5 54 61-123 76-129 (398)
92 PF04515 Choline_transpo: Plas 23.7 6.8E+02 0.015 28.8 11.5 57 589-645 109-168 (334)
93 KOG3970 Predicted E3 ubiquitin 23.5 69 0.0015 35.4 3.0 51 67-122 48-104 (299)
94 KOG1941 Acetylcholine receptor 21.7 37 0.0008 40.2 0.6 49 66-119 362-412 (518)
95 PF04641 Rtf2: Rtf2 RING-finge 20.9 1.3E+02 0.0028 34.0 4.8 58 66-131 110-169 (260)
96 PF13764 E3_UbLigase_R4: E3 ub 20.1 70 0.0015 41.8 2.7 26 60-85 459-486 (802)
No 1
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=100.00 E-value=6.2e-80 Score=712.70 Aligned_cols=944 Identities=18% Similarity=0.199 Sum_probs=573.0
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecccccCCCCCCccHHHHHHHHHH
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAM 147 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~~p~~lp~~~~~~~~~~ 147 (1122)
+.+.|||||+|+.+++||.|||+|+||+||+||+||++|+.+|++.+||+||++|+|+.+|+||||+.+|+.-++++.+.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfsiL~rk~a~ 90 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIRKVAD 90 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccceehhHHHHHH
Confidence 33899999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHH--hhhcc---cc--hhHHHhhhcccch
Q 001217 148 KAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRS---------FGEAQR--LFLSH---IS--TTVILTDCLHGFL 211 (1122)
Q Consensus 148 ~~~~~~~~~l~~~~v~~~wl~~~p~~~~~~~~~~f~~s---------~~~~~~--l~~~~---~s--~~~i~~D~~~G~~ 211 (1122)
...+. -|.++-..+|-.+.|..---+|. +|+.. +..... ++.+. .+ .++.+.-.-.||-
T Consensus 91 t~~~~----trvllT~~~w~VL~~v~~~~Vwn-~~G~~YTm~~~~ssf~~~~~~~~v~~~~q~t~P~LtT~~~~~q~~q~ 165 (1175)
T COG5183 91 TGWKA----TRVLLTIGLWCVLQMVKWMGVWN-MFGKLYTMMLDGSSFNGDGYLFAVSTGLQDTDPELTTRAGFYQLLQN 165 (1175)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHh-hhcceeeeeecCCccCCCCcceeeecccccCChhhhhHHHHHHhhcc
Confidence 54332 45566677898888888777887 34321 110000 00000 01 1233333334555
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-----HhhhcCCCCc-------------------------------ccc-hhhhhhhhh
Q 001217 212 LSASIVFIFLGATSLRDYFRH-----LREIGGQDAE-------------------------------RED-EGDRNVARA 254 (1122)
Q Consensus 212 l~~~iv~~Fi~l~~Lre~i~~-----~~~~~~~~~e-------------------------------~~~-~~~r~~~~~ 254 (1122)
.+...-++.|++...++|++| .+++.+|..| +|. +.|||++|+
T Consensus 166 ~~F~~sfI~I~v~~~~~w~~qd~V~reD~l~~qifek~g~r~s~~~~~~R~r~R~~M~~~~~~E~~~re~~~l~rn~arq 245 (1175)
T COG5183 166 SGFRNSFIWIGVGIPLTWLAQDMVNREDCLLNQIFEKFGERLSDKDLMRRLRRRMLMNPRAILESISRESAQLERNTARQ 245 (1175)
T ss_pred cceEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccChHHHHHHHHHhcccCHHHHHHHHHHHHHHHhhccccc
Confidence 554455666777777777765 1222222100 000 113343322
Q ss_pred hc--------CCCCccCcCc-C--------CC--------------CCCCCC-----CCC--------------------
Q 001217 255 AR--------RPPGQANRNF-A--------GE--------------GNAEDA-----GGA-------------------- 278 (1122)
Q Consensus 255 ~~--------~~~~~~~~~~-~--------~e--------------~~~~d~-----~~~-------------------- 278 (1122)
.. +++++.|+++ + .| +++.++ +++
T Consensus 246 ~~~h~r~n~r~~~~d~Nnnv~N~~~~N~p~~d~nd~rN~en~rpv~~~dh~~~~~~r~~vds~~~~~~~d~~ssI~~gSs 325 (1175)
T COG5183 246 QGEHARENGRDLSSDSNNNVINPVSDNVPSRDMNDSRNVENVRPVRSNDHMNSFLFRPIVDSISGMTLPDSFSSIIYGSS 325 (1175)
T ss_pred chhhhhhccccccccccccccCccccCCCCcCccccccccccccccccCccccccccccccccCCCcCccccceeccCcc
Confidence 21 1222111110 0 00 000000 000
Q ss_pred -----CCC-CCcchhhhc----c-----hhhHHhHHH----HHHhhHhhhhhhh--------------------cCCCCC
Q 001217 279 -----PGI-AGAGQMIRR----N-----AENVAARWE----MQAARLEAHVEQM--------------------FDGLDD 319 (1122)
Q Consensus 279 -----~~~-~~~~~~~~~----n-----~~~~~~~~~----~~~~~~e~~~~~~--------------------~~~~~d 319 (1122)
+++ ++.++.... + .+|..+-|. ...++.+....++ +...+.
T Consensus 326 s~n~~d~~~~~~~~~~s~~~~~D~~~~Iv~n~v~~wan~s~~ee~~~~~~~~rn~i~~~~~~V~~~~~~na~~ra~~~~~ 405 (1175)
T COG5183 326 SCNPTDRIHGSFGAFLSSMGLGDLYSRIVANGVAFWANTSCTEEARKRLGIGRNRIICIFMKVYLIILLNAFFRALTFGL 405 (1175)
T ss_pred cCCCCchhhhccccccCCcccccchhhhccCchhhhcchhhhHHHHHHhccccceeecccCceeecchhHHHHhhcchhh
Confidence 000 000000000 0 001111110 0000100000000 001111
Q ss_pred CCCCCCCchhhhhccccchHHHHHHHHH----------------HHHHHHHHHHHHHhccchhhHHHHHHHHh------h
Q 001217 320 ADGAEDVPFDELVGMQGPVFHLVENAFT----------------VLASNMIFLGVVIFLPFSLGRIILYHVSW------L 377 (1122)
Q Consensus 320 ~~a~ee~~~~ellGl~Gpi~~Llen~f~----------------vl~lntlfl~vf~fiPY~iG~~~l~~~~~------~ 377 (1122)
.|+.+.+.+++..|.+||+-+-.|+..- -+.+..+|+.+-...|-.+||+..--+.+ .
T Consensus 406 ~d~~dFg~i~~~~~~~~~~d~~~q~pLvi~~~~~~~~~iay~iisiv~~~i~l~f~~~fptfIl~f~~~~i~fg~~~~i~ 485 (1175)
T COG5183 406 VDHYDFGNIMNKGMYALHLDNEYQSPLVIGISFIFHMSIAYTIISIVIRNIFLRFKRCFPTFILHFIPDDIDFGMDELIE 485 (1175)
T ss_pred hhHHHHhhHhhccccccCCCccccCceEEEEEEEeeehhhhhhhhhHHHHHHHHHHHhccceeEEecchhhhhhhHHHHH
Confidence 1222234477888888887765565432 11122245555555666677644311100 0
Q ss_pred hhcCCCCccccccc---hhhhhHHHHHHHhhhhhhhhhccccccccCCcc-chhhhhhcccchhhhhhhhcccchhhhhh
Q 001217 378 LSSASGPVLSSVMP---LTETALSLANITLKNALSAVTNLTSEGQEGGLL-GQVADVLKGNASEITEAANSTSASLSADL 453 (1122)
Q Consensus 378 ~~~~~~p~l~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 453 (1122)
-+..-+|.++..+- .+.+++.-+ +..|-+|+ +|+..-......|... ++.|.|.+-++
T Consensus 486 ~~l~~l~~Ls~~~V~y~~f~~lf~~v----------------~~~m~swi~dh~~H~I~y~~~g~~~--~~~s~siF~r~ 547 (1175)
T COG5183 486 ASLIGLSRLSLRLVGYLAFFTLFYGV----------------GLMMISWICDHMGHDIRYSVRGFLK--LSLSYSIFTRL 547 (1175)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhh----------------hHHHHHHHHhhhhhheehhhhhHHH--HHHHHHHHHHH
Confidence 00011122221100 011111111 11222222 2221000001111111 11122223233
Q ss_pred hhhhhcCCCcccchhHhHHhHHHHHHHHHHHHHHHHHhhhcCCCcccccccccchhhhhhcchHHHHHHHHHHHHHhHHH
Q 001217 454 LKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIK 533 (1122)
Q Consensus 454 ~~~~~~~~s~~~~~~~il~GY~~i~~~~~~~l~~~~l~~~~rg~~~~~gr~~g~~~i~~~~~~~~r~~~~~l~~~~~~~K 533 (1122)
+.... ..++ |++.|||...-+..-++|.-..+. +.| ..|-.++.+++..+..|
T Consensus 548 l~~~~---i~l~---t~v~g~c~~~~L~~r~lgrenfl~--------------------N~p-~~RL~f~~l~~~~c~~K 600 (1175)
T COG5183 548 LYSNK---IFLD---TVVKGLCKVVRLEARMLGRENFLY--------------------NAP-MERLIFDKLMLMWCANK 600 (1175)
T ss_pred HHHHH---HHHH---HHHHHHHHHHHHHHhhhchhhccc--------------------cch-HHHHHHHHHHHHhhhhh
Confidence 22100 0111 667777765555554443221110 001 12445589999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhhhhhcccc-hHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCeEe
Q 001217 534 VAFLLVIELGVFPLMCGWWLDVCTIRMFGKS-MSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRG-VLRNGVLY 611 (1122)
Q Consensus 534 V~~i~~iEl~vfPl~cG~~LDictlplf~~t-~~~r~~~~~~~p~~s~f~hW~vGt~ym~~fA~fv~~~R~-IlRpGVL~ 611 (1122)
+.+++.||+.+||+.||..||+|..--+.++ -..-.....-+|..|+|+.|.+|++||++||.|++|.|+ |.|||||+
T Consensus 601 ~~i~f~ieL~~fpi~~g~~l~~cl~~~~~~s~~~~L~~V~~~~p~~s~fi~w~Ig~~fm~~fa~yi~m~Rk~i~Rpgvl~ 680 (1175)
T COG5183 601 NKIFFRIELKAFPIRRGTELEICLYFNTHPSSDFALFYVPKLFPLRSSFIIWSIGLCFMGLFAGYIVMARKIIERPGVLA 680 (1175)
T ss_pred ccEEEEEEeeeccccchhhhhHHHhcccCccchhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceEE
Confidence 9999999999999999999999987433322 222234557799999999999999999999999999999 99999999
Q ss_pred eecCCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCccccceeecCCCCcccchhHHHHHH
Q 001217 612 FLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQI 691 (1122)
Q Consensus 612 FiRdp~DP~f~pi~d~l~~p~~~qlrri~~S~~vy~~~i~~~v~~pv~~~~~~~P~~lPl~~~~~~P~~e~p~DLL~l~~ 691 (1122)
|||||+|||+||+||+|++|+..||+|+.+|++.|+++|+.|++.-.-.++ -+--.+|..+....-..+-|.|||.+-.
T Consensus 681 fiRdp~DPn~~~l~dvL~~pml~qL~rl~~s~i~ya~fiI~g~gs~~~mLk-S~g~~~p~~~~~~~i~Fntv~~ll~~~~ 759 (1175)
T COG5183 681 FIRDPGDPNIKILHDVLLYPMLAQLFRLSWSVIHYAMFIIRGEGSFPFMLK-SAGELCPHGIVNVYINFNTVYPLLGSLM 759 (1175)
T ss_pred EEcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH-hccccccccceeeeeecccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986333332 2334556655443333466788888877
Q ss_pred HHHHHHhhcchhHHHHHHHHHH---HHHhhcccCCccccCCC--CCCCCCCCC------------------Ccccccccc
Q 001217 692 CIPFAIEHFKLRTTIKSLLRYW---FTAVGWALGLTDFLLPR--PEDNGGQEN------------------GNIDIRRDR 748 (1122)
Q Consensus 692 ~lP~~l~~~~pr~~lk~~~~~W---~~~~a~~LrLssfLlg~--~ee~g~~~~------------------~~~~~~~~~ 748 (1122)
++-...+.+||..- ++| ++.++|.||||||+.|+ ++|||+-.| ++.-.++++
T Consensus 760 ~I~lS~~~~kple~-----ryWkT~~~lf~r~lrlSS~V~g~~~s~eegyy~n~f~~~ir~l~tKPk~~Eqae~G~k~~a 834 (1175)
T COG5183 760 VIVLSNDGTKPLEM-----RYWKTPLRLFLRFLRLSSIVEGILSSSEEGYYRNLFRALIRELFTKPKTLEQAELGCKINA 834 (1175)
T ss_pred HhhhccCCccHHHH-----HHHHhHHHHHHHHHhhhHhhcccccCCcccccHHHHHHHHHHHhcCCcchhhhhhhhhhhh
Confidence 77666777776443 477 56699999999999993 577775211 111113345
Q ss_pred chhhccCCcccccCCCCccccCC-----ccccccccccccCCCCCCCCCCCCCCCCC--cccchHHHHHHHHHHHHHHHH
Q 001217 749 NIEIRRDGLQVIPLGPDRALIGM-----PAVDDINRGALVSGNSNVSEEYDGDEQSD--SEYGFVLRIVLLLVIAWMTLL 821 (1122)
Q Consensus 749 ~~~~~~dG~~v~~p~~d~~~~~~-----~~~~d~~~~~~~~~~~~~~e~~~~~~~~~--~~y~F~~RI~~ll~l~wl~~~ 821 (1122)
...+++||-+.+.|..|-+..-. |.+.+ +-.. -++.+...| +++.++. .|++|+.|...++.++|..++
T Consensus 835 ~~~fV~dg~~m~~ps~d~v~~~~g~m~Vpvt~~--gyei-f~ekkk~~E-qn~~y~i~YvP~~FykRll~ll~lvw~~~~ 910 (1175)
T COG5183 835 FISFVFDGWYMYNPSTDLVGLSNGEMAVPVTVV--GYEI-FVEKKKGDE-QNDIYSIKYVPPGFYKRLLDLLYLVWRRVV 910 (1175)
T ss_pred heeeecceEEEEcchhhhcccccceEEEEEEec--chhh-hhhhccccc-cccceEEEecCccHHHHHHHHHHHHHHHHH
Confidence 56788999999999877654211 11111 1111 122222222 1222322 256899999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHhhccCCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHH
Q 001217 822 VINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIE-----HVRTKRAAILFKQIWKWC 896 (1122)
Q Consensus 822 ~~~~~~~~vPl~iGR~l~~~~~~~~i~~~~~~hDlYa~~iG~yv~w~~~~~~~~~~~-----~~~~~r~~~~~~~~~~w~ 896 (1122)
..-..++++|..+||.+-+.- .+ .+.-||+||+.+|.|++-..-.....++. +.|.--.++..+-++.-.
T Consensus 911 ~i~~~vtFi~~aL~~~v~s~~-F~----~VVK~~~YsY~~~yY~l~F~~~~~HA~Ve~ve~D~~Rdi~N~iN~~I~M~~~ 985 (1175)
T COG5183 911 NIDEEVTFISQALINFVCSFG-FL----PVVKLLLYSYLNIYYVLHFTTLDEHAVVEEVEHDIERDINNAINQGIFMAIF 985 (1175)
T ss_pred HhhhhheehHHHHHHHHHHhc-cc----HHHHHHHHHHHhhheEEeechhHhhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999998754 22 24568999999999996433222222222 223222233333334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC-CCceeeechhhHHHHHHHHHHHHHHHhcCCCCCccchHHHH
Q 001217 897 GIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVD-ESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRIK 975 (1122)
Q Consensus 897 ~~~lk~~~~~~~~~~ViPlL~GlL~EL~vviPlr~~l~-~tpvi~l~QdWaLGvL~~Ki~~~~~~~~p~~~~~~~~w~~~ 975 (1122)
.+++|+.++.++-+.+.|++.|...++|+-+ +++-.| -|-.++-.|+|++|..-++.....+.. .+..|.. ..
T Consensus 986 ~M~vKY~LmvFi~I~I~~i~~~v~W~v~t~~-~~a~yN~~Ti~v~~~ss~tIG~F~~~~~~~~VvS-s~~~F~t----k~ 1059 (1175)
T COG5183 986 SMLVKYNLMVFIAIMIAVIRTMVSWVVLTDG-ILACYNYLTIRVFGNSSYTIGWFKYDESLLFVVS-SMVNFGT----KS 1059 (1175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhcceeEEEecccceEEeeeeccceeeeeeh-hhHHHHH----HH
Confidence 7889999888888999999999999999887 666555 556678899999997666655544431 2222321 33
Q ss_pred HHHHHHhhccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc-Cc-cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001217 976 FERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVFPVL-GY-PLVVNSAVYRFAWLGCLCFSVLWFCAKRF 1053 (1122)
Q Consensus 976 ~e~v~~dG~~~~d~~~~~r~iv~Pv~~~ll~aL~vPyvla~~v~p~~-g~-~~~~~~~v~R~~yP~~l~~~~l~~~~~~~ 1053 (1122)
+.-..||-|.++...-+++...+|.+..++.++.+|.|+-..--|.+ .- +..--++.||-++|..+.+..+.-...++
T Consensus 1060 ~k~~FRnR~~k~~~L~L~Kq~~l~~v~~vl~~iiL~~VF~~Vs~~~i~dI~~S~S~TL~~~~~~PIy~~LL~~~~~~~~F 1139 (1175)
T COG5183 1060 LKLFFRNRFLKTMALELFKQGFLHMVIYVLPIIILSLVFLDVSTKQIIDISHSRSFTLSLNESFPIYFGLLIALESFTFF 1139 (1175)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHhhccccccceeehhhhccHHHHHHHHHHHhHHH
Confidence 55667788999999999999999999999999998877653322321 10 11122468999999866554444444555
Q ss_pred HHHHHHHHHhhcccccccccccccCCccc
Q 001217 1054 HVWFTNLHNSIRDDRYLIGRRLHNFGEDI 1082 (1122)
Q Consensus 1054 ~~~~~~l~~~IRDd~YLVG~RL~Ny~~~~ 1082 (1122)
-.--..|.|.+||+.|+||.|+||+|+..
T Consensus 1140 ~qat~~~~Q~~ks~v~~V~~~v~t~G~a~ 1168 (1175)
T COG5183 1140 FQATVLFIQWFKSTVQNVKDEVYTKGRAL 1168 (1175)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhccccC
Confidence 44567899999999999999999999865
No 2
>PHA02862 5L protein; Provisional
Probab=99.67 E-value=3.4e-17 Score=160.98 Aligned_cols=65 Identities=28% Similarity=0.778 Sum_probs=57.8
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecccccCCCCCCccHHHHHH
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIV 143 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~~p~~lp~~~~~~ 143 (1122)
.++||||+++++++ .+||+|+||.|+|||+||++|+++|++.+||+||++|.+++.|. |+++|..
T Consensus 2 ~diCWIC~~~~~e~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yK-------pf~kW~~ 66 (156)
T PHA02862 2 SDICWICNDVCDER---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYV-------SFKKWNW 66 (156)
T ss_pred CCEEEEecCcCCCC---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccc-------cHHHhhc
Confidence 47899999876433 59999999999999999999999999999999999999998874 7888864
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.57 E-value=1.5e-15 Score=152.56 Aligned_cols=63 Identities=27% Similarity=0.759 Sum_probs=55.6
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccccc
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYA 129 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~ 129 (1122)
+..+.++.||||+++++ +..+||+|+||.++||++||++|++.|++..||+|+++|.+...|.
T Consensus 3 ~~s~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~k 65 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYK 65 (162)
T ss_pred CcCCCCCeeEecCCCCC---CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecC
Confidence 44567799999998743 4569999999999999999999999999999999999999987664
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.52 E-value=4e-15 Score=124.04 Aligned_cols=49 Identities=53% Similarity=1.325 Sum_probs=46.0
Q ss_pred cceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccc
Q 001217 71 VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1122)
Q Consensus 71 ~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1122)
+||||++++++++++++||+|+||++++|++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999667788999999999999999999999999999999999996
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.45 E-value=1.5e-14 Score=119.55 Aligned_cols=47 Identities=47% Similarity=1.220 Sum_probs=39.0
Q ss_pred ceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccc
Q 001217 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1122)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1122)
||||+++++++++|++||+|+||+++||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999987777789999999999999999999999999999999998
No 6
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=3.6e-13 Score=143.47 Aligned_cols=61 Identities=30% Similarity=0.806 Sum_probs=51.3
Q ss_pred cccccCCcceEecCCCCCC--CCcccccCCCCccccccHHHHHHHHHccC------CCcccccccceee
Q 001217 64 EEEEEEEVCRICRNPGDPE--NPLRYPCACSGSIKFVHQDCLLQWLNHSN------ARQCEVCKHAFSF 124 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~--~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~------~~~CelC~~~f~~ 124 (1122)
++.+.++.||||+..+++. ..+++||+|+|+.|+|||+||.+|+.+++ ...|++|+++|.+
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 4567889999999765432 23689999999999999999999998863 4689999999986
No 7
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.00 E-value=2.2e-10 Score=129.41 Aligned_cols=68 Identities=32% Similarity=0.761 Sum_probs=57.9
Q ss_pred cccccCCcceEecCCCCCCC--CcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecccccCC
Q 001217 64 EEEEEEEVCRICRNPGDPEN--PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAEN 131 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~ 131 (1122)
+..+++..||||+++.++.+ ++..||.|+|+.+++|+.|+++|+..+++..||+|++.|.....+.+.
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~ 142 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKP 142 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecc
Confidence 33445689999998766544 799999999999999999999999999999999999999987665433
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.4e-05 Score=89.42 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=42.4
Q ss_pred CcceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 70 EVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+.|-||+|++++++.| +.||+ |.+|..|++.||... ...||+||++-.-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 8999999999988887 58988 689999999999876 3579999996543
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.49 E-value=0.00012 Score=68.03 Aligned_cols=53 Identities=38% Similarity=0.861 Sum_probs=39.8
Q ss_pred CCcceEecCCCCCC----------CCcccccCCCCccccccHHHHHHHHHcc-CCCcccccccceeec
Q 001217 69 EEVCRICRNPGDPE----------NPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS 125 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~----------~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~ 125 (1122)
++.|-||+...+.. .|++ -+.|+ |.+|..|+.+|++.. .+..||+|+++|+++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 57899999765522 1322 24554 679999999999874 468999999999985
No 10
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.36 E-value=4.8e-05 Score=61.97 Aligned_cols=43 Identities=28% Similarity=0.903 Sum_probs=32.0
Q ss_pred CcceEecCCCCCCC-CcccccCCCCccccccHHHHHHHHHccCCCcccccc
Q 001217 70 EVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1122)
+.|-||+++.++++ ....||. |.+|.+|+.+|++.+ .+||+|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 57999998765433 3456652 789999999999886 4999996
No 11
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00046 Score=62.25 Aligned_cols=52 Identities=38% Similarity=0.931 Sum_probs=38.6
Q ss_pred CcceEecCCCCCCC----------CcccccCCCCccccccHHHHHHHHHcc-CCCcccccccceeec
Q 001217 70 EVCRICRNPGDPEN----------PLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS 125 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~----------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~ 125 (1122)
++|-|||.+.+..- ||+-- .| .+.+|..|+.+|+..+ ++..||+|+++|++.
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C---~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWG-YC---LHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHH-HH---HHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 39999998765322 34211 23 2679999999999876 457999999999885
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.94 E-value=0.00069 Score=74.52 Aligned_cols=52 Identities=19% Similarity=0.545 Sum_probs=38.3
Q ss_pred cccCCcceEecCCCCCCC------CcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPEN------PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
.+++..|.||+++..+.. ....+|. |.+|.+|+.+|++.+ .+||+|+.++..
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~~ 228 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEeeE
Confidence 345689999998643221 1234554 789999999999854 599999999875
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00058 Score=75.73 Aligned_cols=51 Identities=31% Similarity=0.671 Sum_probs=40.7
Q ss_pred ccccCCcceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHH-ccCCCcccccccce
Q 001217 65 EEEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLN-HSNARQCEVCKHAF 122 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~-~s~~~~CelC~~~f 122 (1122)
+.+.+-.|.||.+.....+.+ +.||+ |-+|..|+++|+. ++ .+||+|+.+.
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~--~~CPvCrt~i 371 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS--NKCPVCRTAI 371 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc--ccCCccCCCC
Confidence 455668999999876654444 79998 5799999999998 55 4899999764
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00083 Score=76.15 Aligned_cols=52 Identities=31% Similarity=0.931 Sum_probs=40.1
Q ss_pred cccCCcceEecCC-CCCC-C---------CcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNP-GDPE-N---------PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~-~~~~-~---------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
..+...|-||++| -+++ + |-..||. |..|-+||+.|++++ ++||+||.+..+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCcccc
Confidence 4566899999987 2322 1 2356875 689999999999987 599999988655
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.73 E-value=0.00075 Score=61.31 Aligned_cols=44 Identities=39% Similarity=1.013 Sum_probs=30.1
Q ss_pred CCcceEecCCCCC----------CCCc-ccccCCCCccccccHHHHHHHHHccCCCcccccc
Q 001217 69 EEVCRICRNPGDP----------ENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1122)
Q Consensus 69 ~~~CRIC~~~~~~----------~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1122)
++.|-||+++.++ +.++ ..+| .|.+|..||.+|++.++ +||+|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C-----~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPC-----GHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETT-----SEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEeccc-----CCCEEHHHHHHHHhcCC--cCCCCC
Confidence 3459999987521 1122 2344 37899999999998765 999996
No 16
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=96.49 E-value=0.0014 Score=74.28 Aligned_cols=225 Identities=24% Similarity=0.266 Sum_probs=148.9
Q ss_pred HHHHHHHhhhhhhhhhhHHhhccCCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHH
Q 001217 821 LVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWK---WCG 897 (1122)
Q Consensus 821 ~~~~~~~~~vPl~iGR~l~~~~~~~~i~~~~~~hDlYa~~iG~yv~w~~~~~~~~~~~~~~~~r~~~~~~~~~~---w~~ 897 (1122)
....+.+-..+-.++|..+..|- . +.=...+.+||..++.........+...... ...... ...
T Consensus 96 l~~pC~C~g~l~~vH~~cl~~W~--~----------~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 162 (323)
T KOG1609|consen 96 LISPCSCKGSLAYVHRSCLEKWF--S----------IKGNITCEICKSFFINVGTKLKPLIVISKVR-SGALSERTLSGM 162 (323)
T ss_pred cccCccccCcHHHHHHHHHHhhh--c----------cccCeeeecccccceecceeecceeehhhhh-hHhhhheeeehh
Confidence 44556666677777888888872 1 1122334556665433211111111111000 001111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCceeeechhhHHHHHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 001217 898 IVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRIKFE 977 (1122)
Q Consensus 898 ~~lk~~~~~~~~~~ViPlL~GlL~EL~vviPlr~~l~~tpvi~l~QdWaLGvL~~Ki~~~~~~~~p~~~~~~~~w~~~~e 977 (1122)
..++......+...+.|++.|.+.|+.+..|.++ .+.+.....++|++|+...+++.....++..+ ...+|+.++.
T Consensus 163 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~ 238 (323)
T KOG1609|consen 163 ILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLV--VESPLANPLALVALGLLGFKIWIFIILSGYIF--ILKSLKVKLV 238 (323)
T ss_pred hhhhhhhhheeeEEeehhhhhhhHHHhccccccc--cCCCccCchhheeecceechHHHHHHHHHHHH--HHHHHHHHHh
Confidence 2344444444455679999999999999988877 77888888999999999999999998876544 3456667788
Q ss_pred HHHHhhccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001217 978 RVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLCFSVLWFCAKRFHVWF 1057 (1122)
Q Consensus 978 ~v~~dG~~~~d~~~~~r~iv~Pv~~~ll~aL~vPyvla~~v~p~~g~~~~~~~~v~R~~yP~~l~~~~l~~~~~~~~~~~ 1057 (1122)
.++..++...-..++ .+++.. .+....+++|.++...+|.++.+.. +..++........+........+.
T Consensus 239 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 308 (323)
T KOG1609|consen 239 LIRAVIFLLLIKVVL-AAVVIL---QLLLQRLVGYLLANSLTPLYIVSLL------MFIVISRLGLSSLEMSVPRLATLV 308 (323)
T ss_pred Hhhhhccchhhhhhh-hhHHHH---HHHHhcceeEEEecccceeeecccH------HHHhhhhhhHHHHHhhHHHHHHHH
Confidence 888888888776666 665555 7777889999999999988875432 556666555566666677777777
Q ss_pred HHHHHhhcccccccc
Q 001217 1058 TNLHNSIRDDRYLIG 1072 (1122)
Q Consensus 1058 ~~l~~~IRDd~YLVG 1072 (1122)
...++..++|+|-+|
T Consensus 309 ~~~~~~~~~~~~~~~ 323 (323)
T KOG1609|consen 309 LSSLKTVRLDRYKVG 323 (323)
T ss_pred HHHHHHHHHHhhhcC
Confidence 777888999988765
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.30 E-value=0.0016 Score=58.81 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=25.8
Q ss_pred CCcceEecCCCC-CCCCcccccCCCCccccccHHHHHHHHHccC---------CCcccccccceeec
Q 001217 69 EEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSN---------ARQCEVCKHAFSFS 125 (1122)
Q Consensus 69 ~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~---------~~~CelC~~~f~~~ 125 (1122)
+..|.||++... .++....-|.....-+.+|..||.+|+.... ...||.|+.+.+.+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 467999997543 2221123343222235799999999997531 14699999998764
No 18
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0077 Score=65.36 Aligned_cols=59 Identities=31% Similarity=0.729 Sum_probs=46.6
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc-CCCcccccccceeec---ccccC
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS---PVYAE 130 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~---~iy~~ 130 (1122)
.+...=.|-||++.. .+|.+++|. |.+==.||-||+..+ +++.||+||.+...+ |+|--
T Consensus 43 ~~~~~FdCNICLd~a--kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA--KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCCCceeeeeecccc--CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 355667899999854 579999986 678889999999876 567789999998764 56643
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.03 E-value=0.0053 Score=65.37 Aligned_cols=56 Identities=27% Similarity=0.640 Sum_probs=42.2
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc--------------CCCcccccccceee---ccccc
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--------------NARQCEVCKHAFSF---SPVYA 129 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--------------~~~~CelC~~~f~~---~~iy~ 129 (1122)
+++-.|.||++.. .+|.+.+|. |.++..|+.+|+..+ +...||+|+.++.. .|+|.
T Consensus 16 ~~~~~CpICld~~--~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQV--RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcC--CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3457899999854 468888875 789999999998632 34689999998864 35563
No 20
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.91 E-value=0.0052 Score=56.08 Aligned_cols=28 Identities=18% Similarity=0.702 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHHccCCCcccccccceeec
Q 001217 96 KFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 96 ~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
|.+|-.|+.+||+.+ ..||+|+++|++.
T Consensus 56 HaFH~HCI~rWL~Tk--~~CPld~q~w~~~ 83 (88)
T COG5194 56 HAFHDHCIYRWLDTK--GVCPLDRQTWVLA 83 (88)
T ss_pred hHHHHHHHHHHHhhC--CCCCCCCceeEEe
Confidence 679999999999985 4999999999874
No 21
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.73 E-value=0.0025 Score=78.97 Aligned_cols=60 Identities=27% Similarity=0.608 Sum_probs=44.2
Q ss_pred cccccCCcceEecCCCC-CCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 64 EEEEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+.-+..+.|.||..--+ -++.+-+ =+|.-+-+.+|-.||-+|.++|++.+||+|+.++.|
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPs-krC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPS-KRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCc-cccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44567799999986332 2333421 235455567999999999999999999999988765
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=95.68 E-value=0.0095 Score=64.32 Aligned_cols=55 Identities=20% Similarity=0.512 Sum_probs=40.2
Q ss_pred ccccCCcceEecCCCC----C-CC--CcccccCCCCccccccHHHHHHHHHccC----CCcccccccceee
Q 001217 65 EEEEEEVCRICRNPGD----P-EN--PLRYPCACSGSIKFVHQDCLLQWLNHSN----ARQCEVCKHAFSF 124 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~----~-~~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~----~~~CelC~~~f~~ 124 (1122)
..+.+++|-||++.-. + ++ .+..+|. |.+...|+.+|.+.+. ...||+|+..|.+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4456799999997531 1 11 3456665 6799999999998642 4679999999986
No 23
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.47 E-value=0.011 Score=46.69 Aligned_cols=43 Identities=26% Similarity=0.811 Sum_probs=32.1
Q ss_pred cceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHHccCCCcccccccc
Q 001217 71 VCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHA 121 (1122)
Q Consensus 71 ~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~ 121 (1122)
.|.||++.. .++. ..||. |.+|.+|+.+|++. ++..|++|+..
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--hCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 488998765 2333 34454 56999999999987 45689999975
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.011 Score=72.89 Aligned_cols=54 Identities=28% Similarity=0.712 Sum_probs=41.3
Q ss_pred ccccCCcceEecCCCCCC-C--CcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 65 EEEEEEVCRICRNPGDPE-N--PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~-~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..+..+.|.||+++...+ + +-+.||. |-+|..||.+|++.+ .+||.|+.++.-.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVLYDY 343 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhhhcc
Confidence 456679999999875432 2 4567776 789999999999984 6999999954433
No 25
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.14 E-value=0.01 Score=49.68 Aligned_cols=46 Identities=22% Similarity=0.722 Sum_probs=35.9
Q ss_pred CCcceEecCCCCCCCCcccccCCCCcccc-ccHHHHHHHHHccCCCccccccccee
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+..|.||++.. .+....||. |. +...|..+|++ ++.+|++|+.+++
T Consensus 2 ~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP--RDVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB--SSEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccC--CceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 47899998753 457789987 56 89999999999 5579999998764
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.67 E-value=0.026 Score=42.90 Aligned_cols=39 Identities=31% Similarity=0.960 Sum_probs=30.1
Q ss_pred ceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccc
Q 001217 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1122)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1122)
|.||++. ..++...||. |.+|..|+.+|++ .++..|++|
T Consensus 1 C~iC~~~--~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 7889876 3456677866 5699999999998 455689987
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.047 Score=64.45 Aligned_cols=52 Identities=33% Similarity=0.731 Sum_probs=37.5
Q ss_pred ccccCCcceEecCCCC------CC---------CCcccccCCCCccccccHHHHHHHHHccCCCcccccccce
Q 001217 65 EEEEEEVCRICRNPGD------PE---------NPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~------~~---------~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1122)
-.+....|-||...-+ +. +-+.+||+ |.+|..||++|+...+ ..|++|+...
T Consensus 567 ~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pL 633 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPL 633 (636)
T ss_pred hhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCC
Confidence 3566789999976431 11 12356887 6899999999999542 6899999754
No 28
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.08 Score=59.30 Aligned_cols=53 Identities=26% Similarity=0.721 Sum_probs=41.7
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
...+....|-+|++. .++|--.||. |.+==.|++.|.+++. .||+|+.+++-.
T Consensus 234 ~i~~a~~kC~LCLe~--~~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 234 SIPEATRKCSLCLEN--RSNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred cCCCCCCceEEEecC--CCCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 344556899999975 3467778886 7788899999999874 599999998744
No 29
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=93.41 E-value=0.046 Score=43.58 Aligned_cols=40 Identities=38% Similarity=1.035 Sum_probs=32.6
Q ss_pred ceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHHccCCCccccc
Q 001217 72 CRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1122)
Q Consensus 72 CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1122)
|.||++..+ ++. ..||. |.++.+|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~--~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 788987643 344 68877 77999999999998778899998
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=92.32 E-value=0.12 Score=44.83 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=37.2
Q ss_pred CcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
-.|.||.+.- ++|...||. +.+-+.|+.+|++. +.+||+|+..+..+
T Consensus 2 ~~Cpi~~~~~--~~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVM--KDPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcC--CCCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCChh
Confidence 3699998754 458888763 67999999999987 46899999987543
No 31
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.095 Score=60.49 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=31.8
Q ss_pred CcceEecCCCCCCCCc--ccccCCCCccccccHHHHHHHHHccCC-Ccccccc
Q 001217 70 EVCRICRNPGDPENPL--RYPCACSGSIKFVHQDCLLQWLNHSNA-RQCEVCK 119 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L--~~PC~C~Gsi~~vH~~CL~~Wl~~s~~-~~CelC~ 119 (1122)
..|.||-+.-.-+..+ ++-|. |.+|..||.||+..... +.||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 6799994332223333 33333 67999999999998655 7999999
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.61 E-value=0.29 Score=57.97 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=39.9
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
-+..-.|.||.+.. .+|.+.||. |.+...|+.+|+... ..|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~--~~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFF--DVPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhh--hCccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 34567999998754 457778876 679999999999864 489999999764
No 33
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.3 Score=54.23 Aligned_cols=59 Identities=22% Similarity=0.624 Sum_probs=41.1
Q ss_pred ccCCcceEecCCCC---CCCCc---ccccCCCCccccccHHHHHHHHHccCCCcccccccceeecccc
Q 001217 67 EEEEVCRICRNPGD---PENPL---RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVY 128 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~---~~~~L---~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy 128 (1122)
.+...|.+|-..-+ +++-+ .+-=.|. |-+|+.|+.-|---.++.+||-||.+...+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn---HvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN---HVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc---cchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 45589999965422 11111 1222343 579999999999999999999999998776544
No 34
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.19 Score=57.98 Aligned_cols=47 Identities=26% Similarity=0.717 Sum_probs=32.9
Q ss_pred ccccCCcceEecCCCCCCCCccccc----CCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPC----ACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC----~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+.++++.|-||+++.- +.++.|| .|+ +|-+.-.-. +..||+|++.+.
T Consensus 286 ~~~~gkeCVIClse~r--dt~vLPCRHLCLCs--------~Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSESR--DTVVLPCRHLCLCS--------GCAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCCc--ceEEecchhhehhH--------hHHHHHHHh--hcCCCccccchH
Confidence 5677899999997643 4555555 465 577766532 248999999875
No 35
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=90.32 E-value=0.15 Score=40.51 Aligned_cols=38 Identities=32% Similarity=0.899 Sum_probs=28.4
Q ss_pred ceEecCCCCCCCC-cccccCCCCccccccHHHHHHHHHccCCCccccc
Q 001217 72 CRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1122)
Q Consensus 72 CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1122)
|.||++.. .+| ...+|. |.+.++|+++|++. + .+|++|
T Consensus 1 C~iC~~~~--~~~~~~~~CG-----H~fC~~C~~~~~~~-~-~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCG-----HSFCKECIEKYLEK-N-PKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTS-----EEEEHHHHHHHHHC-T-SB-TTT
T ss_pred CCCCCCcc--cCcCEECCCC-----CchhHHHHHHHHHC-c-CCCcCC
Confidence 77897654 346 467765 78999999999998 3 699988
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.97 E-value=0.14 Score=60.21 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=35.5
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
-|-++|.+|++.-+++-.-+.|=.|. |-+|-.||++|=. .+|++|++--+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~---Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN---HSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc---cccchHHHhhccc----CcChhhhhhcC
Confidence 45699999998765443333344443 4599999999966 48999997643
No 37
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.88 E-value=0.66 Score=57.79 Aligned_cols=28 Identities=18% Similarity=0.557 Sum_probs=23.5
Q ss_pred ccccHHHHHHHHHccCCCcccccccceeec
Q 001217 96 KFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 96 ~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
||+|..|+..|-+.. .+|++|+.+|.-.
T Consensus 146 H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 146 HYFCEECVGSWSRCA--QTCPVDRGEFGEV 173 (1134)
T ss_pred cccHHHHhhhhhhhc--ccCchhhhhhhee
Confidence 589999999998765 5999999999643
No 38
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=87.77 E-value=0.4 Score=39.23 Aligned_cols=43 Identities=21% Similarity=0.607 Sum_probs=34.3
Q ss_pred cceEecCCCC-CCCCcccccCCCCccccccHHHHHHHHHccCCCccccccc
Q 001217 71 VCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKH 120 (1122)
Q Consensus 71 ~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~ 120 (1122)
.|-||++..+ ...+.+.+|. |.+.+.|+.+.. .+...|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 3889998874 3346788885 789999999999 55679999984
No 39
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.11 E-value=0.42 Score=40.32 Aligned_cols=46 Identities=24% Similarity=0.691 Sum_probs=22.3
Q ss_pred ceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc--CCCccccccccee
Q 001217 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--NARQCEVCKHAFS 123 (1122)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--~~~~CelC~~~f~ 123 (1122)
|.+|-++.+..+.-+.||.|. +|-|+.=|.... ....||-||.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 667877665555567999994 567777777654 3679999999984
No 40
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.21 E-value=1.2 Score=51.11 Aligned_cols=54 Identities=22% Similarity=0.568 Sum_probs=34.8
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
|.+|++..|-||-+..+-. -+.||.- -.-..|-.+-..--++..|.+|+++..-
T Consensus 56 dtDEen~~C~ICA~~~TYs--~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 56 DTDEENMNCQICAGSTTYS--ARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccccceeEEecCCceEE--EeccCCc-----hHHHHHHHHHHHHHhccCCCccccccce
Confidence 3456778999997654422 2578872 2233455555544466799999998753
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.25 E-value=0.52 Score=55.07 Aligned_cols=54 Identities=20% Similarity=0.533 Sum_probs=40.2
Q ss_pred ccCCcceEecCCCC-CCC-CcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGD-PEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~-~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+.+.+|.||+++.+ +++ .+++| .|. +.+-.+|+++|+..+.+..|++|+.+-..
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred CccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 45689999999875 333 34444 443 57999999999976667899999987543
No 42
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=0.85 Score=44.05 Aligned_cols=29 Identities=21% Similarity=0.611 Sum_probs=25.4
Q ss_pred ccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 96 KFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 96 ~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
|-+|-.|+.+|++.+ ..||+|+.+..+.+
T Consensus 83 HaFH~hCisrWlktr--~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTR--NVCPLDNKEWVFQR 111 (114)
T ss_pred hHHHHHHHHHHHhhc--CcCCCcCcceeEee
Confidence 579999999999987 49999999998753
No 43
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.51 E-value=1.1 Score=51.14 Aligned_cols=54 Identities=28% Similarity=0.663 Sum_probs=38.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc--CCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--NARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--~~~~CelC~~~f~~~ 125 (1122)
++|++.|..|.++-+-.+.-+.||.|.- |-|=--|-..+ =+..|+-|+..|.=+
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy------~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGY------QICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccccCcccccccccccCCcccCCccc------HHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3556779999988776667789999942 44544465443 357999999988643
No 44
>PLN02189 cellulose synthase
Probab=74.15 E-value=2.1 Score=55.95 Aligned_cols=54 Identities=22% Similarity=0.553 Sum_probs=38.2
Q ss_pred ccCCcceEecCCC--CCCCCcccccC-CCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPG--DPENPLRYPCA-CSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~-C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
-.+.+|+||-++- +.+++++-.|+ |.= -|=+.|. +.-.+.+++.|+.||++|+-
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~f---pvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGF---PVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCC---ccccchh-hhhhhcCCccCcccCCchhh
Confidence 3456999997652 24455667777 632 2777898 44555678999999999983
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.86 E-value=3.6 Score=47.37 Aligned_cols=51 Identities=14% Similarity=0.417 Sum_probs=35.8
Q ss_pred CCcceEecCCCC--CCCC-cccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 69 EEVCRICRNPGD--PENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 69 ~~~CRIC~~~~~--~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
+..|-+|..+.. ++-. ++++|. |-+=++|+.+.+.. +...||.|+..++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 468999997532 2222 466664 56778999997654 456999999887654
No 46
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=72.76 E-value=1.2 Score=45.18 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=29.4
Q ss_pred ccCCcceEecCCCCC-CCCcccccCCCCcc-ccccHHHHHHHHHc
Q 001217 67 EEEEVCRICRNPGDP-ENPLRYPCACSGSI-KFVHQDCLLQWLNH 109 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~-~~~L~~PC~C~Gsi-~~vH~~CL~~Wl~~ 109 (1122)
+..-.|+||++.-.. ++-..-+|..+-.+ |.+|.+|+.+|-+.
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 346789999986554 44555665544332 67999999999543
No 47
>PLN02436 cellulose synthase A
Probab=68.95 E-value=3.2 Score=54.34 Aligned_cols=53 Identities=19% Similarity=0.506 Sum_probs=37.5
Q ss_pred cCCcceEecCCC--CCCCCcccccC-CCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 68 EEEVCRICRNPG--DPENPLRYPCA-CSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 68 ~~~~CRIC~~~~--~~~~~L~~PC~-C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
...+|+||-++- +.+++++-.|+ |.= -|=+.|. +.-...+++.|+.||++|+-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~f---pvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAF---PVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCC---ccccchh-hhhhhcCCccCcccCCchhh
Confidence 446999997652 34556666676 532 2777898 44555678899999999983
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=68.69 E-value=2.3 Score=49.69 Aligned_cols=52 Identities=21% Similarity=0.654 Sum_probs=39.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..-..|.||-+.+ .+--+-||. |..-..||-.|..++....|+.|+.+.+=+
T Consensus 367 sTFeLCKICaend--KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 367 STFELCKICAEND--KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred chHHHHHHhhccC--CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4448899996542 233468986 566679999999888788999999987654
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=68.02 E-value=2.7 Score=34.70 Aligned_cols=40 Identities=35% Similarity=0.796 Sum_probs=22.1
Q ss_pred ceEecCCCCCCC-CcccccCCCCccccccHHHHHHHHHcc--CCCccc
Q 001217 72 CRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHS--NARQCE 116 (1122)
Q Consensus 72 CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--~~~~Ce 116 (1122)
|-||++-.++++ |...||. |-+=++||+++.+.+ +.-+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 778888333444 6778866 568899999999976 455664
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=67.95 E-value=3.7 Score=54.27 Aligned_cols=56 Identities=18% Similarity=0.459 Sum_probs=42.3
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc--------CCCccccccccee
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--------NARQCEVCKHAFS 123 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--------~~~~CelC~~~f~ 123 (1122)
...+..++|-||+.|.-. -.||---|..|.+|-.|-.+=+..+ +...||+|+.+..
T Consensus 3481 tkQD~DDmCmICFTE~L~----AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALS----AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hhcccCceEEEEehhhhC----CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 345566999999976432 3578777778999999987766554 4689999998864
No 51
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=67.02 E-value=3 Score=34.05 Aligned_cols=40 Identities=25% Similarity=0.690 Sum_probs=28.0
Q ss_pred ceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCC--Cccccc
Q 001217 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNA--RQCEVC 118 (1122)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~--~~CelC 118 (1122)
|.||++-. .+|...+|. |-+=+.||.+|.+.++. ..|++|
T Consensus 1 CpiC~~~~--~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF--KDPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh--CCccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 77888754 468888875 56889999999988755 489988
No 52
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=65.63 E-value=3.4 Score=51.26 Aligned_cols=61 Identities=30% Similarity=0.578 Sum_probs=41.8
Q ss_pred CcceEecCC-CCCCCCcccccCCCCccccccHHHH-------HHHHHcc-------CCCcccccccceeecccccCC
Q 001217 70 EVCRICRNP-GDPENPLRYPCACSGSIKFVHQDCL-------LQWLNHS-------NARQCEVCKHAFSFSPVYAEN 131 (1122)
Q Consensus 70 ~~CRIC~~~-~~~~~~L~~PC~C~Gsi~~vH~~CL-------~~Wl~~s-------~~~~CelC~~~f~~~~iy~~~ 131 (1122)
.-|-+|-+| +=.||||++ |.=.++---|||.|- =.|+-++ -..+||+|-|++--.+..+.+
T Consensus 6 GGCCVCSDErGWaeNPLVY-CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~ 81 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVY-CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNG 81 (900)
T ss_pred cceeeecCcCCCccCceee-ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCC
Confidence 348899765 337899986 554445556999995 4688543 246999999998665544433
No 53
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=64.68 E-value=7 Score=44.50 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=32.0
Q ss_pred eEecCCCCCCCCcccccCCCCcc-ccccHHHHHHHHHccCCCcccccccc
Q 001217 73 RICRNPGDPENPLRYPCACSGSI-KFVHQDCLLQWLNHSNARQCEVCKHA 121 (1122)
Q Consensus 73 RIC~~~~~~~~~L~~PC~C~Gsi-~~vH~~CL~~Wl~~s~~~~CelC~~~ 121 (1122)
++|.+.....++++. |.|.++- .|+|-.|.=-=..-+++++|+-|+..
T Consensus 220 ~yC~Cnqvsyg~Mi~-CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIG-CDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred EEEEecccccccccc-cCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 334433333445554 9998887 99999995322233578999999865
No 54
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.79 E-value=8.1 Score=41.11 Aligned_cols=49 Identities=20% Similarity=0.593 Sum_probs=35.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccce
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1122)
++---|-||++..++..|. --+|. |.+-..|++.=++.. .+||+|+.+.
T Consensus 129 ~~~~~CPiCl~~~sek~~v--sTkCG---HvFC~~Cik~alk~~--~~CP~C~kkI 177 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV--STKCG---HVFCSQCIKDALKNT--NKCPTCRKKI 177 (187)
T ss_pred ccccCCCceecchhhcccc--ccccc---hhHHHHHHHHHHHhC--CCCCCccccc
Confidence 3447899999877654443 33452 678899999888754 6999999754
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=61.49 E-value=3.6 Score=46.65 Aligned_cols=57 Identities=21% Similarity=0.481 Sum_probs=39.0
Q ss_pred cccccCCcceEecCCCCCCC-CcccccCCCCccccccHHHHHHHHHcc---------------------CCCcccccccc
Q 001217 64 EEEEEEEVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHS---------------------NARQCEVCKHA 121 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s---------------------~~~~CelC~~~ 121 (1122)
+..-....|-||+=+.-++. -.+++|- ||.|-.||.+.|.+- -+..|++|+.+
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~ 184 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRER 184 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhh
Confidence 33445578888875443332 2367776 799999998887641 13579999988
Q ss_pred eeec
Q 001217 122 FSFS 125 (1122)
Q Consensus 122 f~~~ 125 (1122)
....
T Consensus 185 i~~e 188 (368)
T KOG4445|consen 185 IKIE 188 (368)
T ss_pred cccc
Confidence 7664
No 56
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=61.46 E-value=11 Score=39.51 Aligned_cols=40 Identities=28% Similarity=0.557 Sum_probs=27.9
Q ss_pred cCCcceEecCCCC--------CCCCcccccCCCCccccccHHHHHHHHHc
Q 001217 68 EEEVCRICRNPGD--------PENPLRYPCACSGSIKFVHQDCLLQWLNH 109 (1122)
Q Consensus 68 ~~~~CRIC~~~~~--------~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~ 109 (1122)
|+..|-||.+--. .-+.--.|-.|..| |-|..||+|.-+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts--~rhSNCLdqfkka 48 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTS--YRHSNCLDQFKKA 48 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCc--cchhHHHHHHHHH
Confidence 3468999987432 11223466678876 8999999999874
No 57
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=60.64 E-value=4.5 Score=36.70 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
+-.|-||.+-- .+|.+.||. +.+-+.|+++|+.. +..+|++|+......
T Consensus 4 ~f~CpIt~~lM--~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELM--RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB---SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHh--hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCcc
Confidence 35688886543 468888755 56899999999998 456999999887654
No 58
>PLN02195 cellulose synthase A
Probab=60.53 E-value=6.4 Score=51.37 Aligned_cols=55 Identities=16% Similarity=0.409 Sum_probs=34.0
Q ss_pred cccCCcceEecCCC--CCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 66 EEEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
++...+|+||-++- +.++++.--|+ .+---|-+.|. +.=...+++.|+.||++|+
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~--eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACH--ECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEec--cCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 35567999997642 23333433332 11123667897 3334457889999999998
No 59
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=60.19 E-value=7.3 Score=44.95 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=37.0
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+--.|-||++=. .-|++.||. |-+-.-|+...++.+ ..||.|..+++
T Consensus 22 ~lLRC~IC~eyf--~ip~itpCs-----HtfCSlCIR~~L~~~--p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYF--NIPMITPCS-----HTFCSLCIRKFLSYK--PQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHh--cCceecccc-----chHHHHHHHHHhccC--CCCCceecccc
Confidence 346899998743 358999975 457778999999865 69999998886
No 60
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.89 E-value=6.4 Score=51.84 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=33.7
Q ss_pred ccCCcceEecCCC--CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
-.+.+|+||-++- +.+++++--|+ -+--=|=+.|. +.=.+.+++.|+.||++|+-
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~--eC~FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACD--VCAFPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEec--cCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 3457999997652 23444433332 11112556897 33344478899999999984
No 61
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=59.83 E-value=4.1 Score=45.98 Aligned_cols=50 Identities=24% Similarity=0.432 Sum_probs=38.2
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
+.-..||||.+-. .-|+..||. |-+-.-|+.+-+... ..||+|+.++...
T Consensus 23 Ds~lrC~IC~~~i--~ip~~TtCg-----HtFCslCIR~hL~~q--p~CP~Cr~~~~es 72 (391)
T COG5432 23 DSMLRCRICDCRI--SIPCETTCG-----HTFCSLCIRRHLGTQ--PFCPVCREDPCES 72 (391)
T ss_pred hhHHHhhhhhhee--ecceecccc-----cchhHHHHHHHhcCC--CCCccccccHHhh
Confidence 3457899998753 347778876 457788999988865 5899999998763
No 62
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.77 E-value=6.4 Score=48.96 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=36.8
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
+..+.++.|+||..+- + .-+.||. |-.|+.+|+..+ ..||+|+.......
T Consensus 474 ~l~~~~~~~~~~~~~~--~-~~~~~~~--------~~~~l~~~~~~~--~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM--S-ARITPCS--------HALCLRKWLYVQ--EVCPLCHTYMKEDD 523 (543)
T ss_pred hhhcccCcchHHHHHH--H-hcccccc--------chhHHHhhhhhc--cccCCCchhhhccc
Confidence 4567779999998754 1 1134444 999999999876 58999988776643
No 63
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=59.30 E-value=6.7 Score=39.89 Aligned_cols=56 Identities=25% Similarity=0.467 Sum_probs=40.7
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
.-=+|-||++... |+....|=.|-|. +.----|..-|--.+-...||+||+.|+-+
T Consensus 79 ~lYeCnIC~etS~-ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA-EERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc-hhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4467999987544 4567788888883 333344567787777788999999999754
No 64
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.21 E-value=9.6 Score=46.35 Aligned_cols=57 Identities=30% Similarity=0.755 Sum_probs=40.8
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc---CCCcccccccceee---cccccCCC
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS---NARQCEVCKHAFSF---SPVYAENA 132 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s---~~~~CelC~~~f~~---~~iy~~~~ 132 (1122)
...|-||+++.. -|..+-|. |.+==.||.|.++.+ +...|++|+..+.. .|++-+++
T Consensus 186 ~~~CPICL~~~~--~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPS--VPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCC--cccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 678999998643 23444443 677789999998776 45799999998887 45555554
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=56.69 E-value=5.4 Score=48.20 Aligned_cols=55 Identities=24% Similarity=0.638 Sum_probs=42.7
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc---cCCCcccccccceeec
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFSFS 125 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~~~ 125 (1122)
++..++.+|.+|+++. +++..+-|+ |.+-+.|+.+++.. +++.+||.|.-..++.
T Consensus 531 ~enk~~~~C~lc~d~a--ed~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPA--EDYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChh--hhhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456778999999864 457778877 45788999999864 4569999999888763
No 66
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.86 E-value=6.2 Score=45.63 Aligned_cols=51 Identities=25% Similarity=0.557 Sum_probs=37.1
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
-.+.|++.|-||.... -+..+.||+-+ --..|+.|=+-.+ +.|=.||....
T Consensus 417 lp~sEd~lCpICyA~p--i~Avf~PC~H~-----SC~~CI~qHlmN~--k~CFfCktTv~ 467 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGP--INAVFAPCSHR-----SCYGCITQHLMNC--KRCFFCKTTVI 467 (489)
T ss_pred CCCcccccCcceeccc--chhhccCCCCc-----hHHHHHHHHHhcC--CeeeEecceee
Confidence 4557779999998642 34678999733 3356888777644 58999998876
No 67
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.57 E-value=9.5 Score=42.88 Aligned_cols=50 Identities=26% Similarity=0.645 Sum_probs=37.2
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHH-HHHccCCCcccccccceeecc
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQ-WLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~-Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
...|-||.+. ++.|...||. |.+--.||.. |-..+ ...|++|+.+-..+.
T Consensus 215 d~kC~lC~e~--~~~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEE--PEVPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeecc--cCCccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccchh
Confidence 3669999875 3567766654 7888899999 87764 457999998766543
No 68
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.54 E-value=12 Score=39.73 Aligned_cols=60 Identities=25% Similarity=0.443 Sum_probs=36.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc---cC------CCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SN------ARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~------~~~CelC~~~f~~~ 125 (1122)
+++...|-||+.---++..--.-|.-...-+-+||-||-.|++. ++ ...|+-|..+...+
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 35557788887411111011134554444577999999999974 22 25899999876653
No 69
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=53.06 E-value=12 Score=44.18 Aligned_cols=38 Identities=18% Similarity=0.593 Sum_probs=28.8
Q ss_pred ccccCCCCccccccHHHHHHHHHcc-----------CCCcccccccceeecc
Q 001217 86 RYPCACSGSIKFVHQDCLLQWLNHS-----------NARQCEVCKHAFSFSP 126 (1122)
Q Consensus 86 ~~PC~C~Gsi~~vH~~CL~~Wl~~s-----------~~~~CelC~~~f~~~~ 126 (1122)
-.+|.|+- .-=-+|+-+|+..+ ++-.||.|+.+|=+..
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 35777775 34568999999754 5789999999997643
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=52.89 E-value=19 Score=46.19 Aligned_cols=55 Identities=20% Similarity=0.565 Sum_probs=42.5
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc-----CCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-----NARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-----~~~~CelC~~~f~~ 124 (1122)
.+.-.|-||.+.-....+.-+ |+..-+.+|-.|+.+|=..+ +.+.|+-|+..++-
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WS---C~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~ 248 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWS---CKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKT 248 (950)
T ss_pred cCceEEEEeeeeccccCCcee---cchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhcc
Confidence 344789999987665555533 66677899999999999765 35899999987774
No 71
>PLN02400 cellulose synthase
Probab=48.95 E-value=10 Score=50.18 Aligned_cols=54 Identities=17% Similarity=0.430 Sum_probs=32.1
Q ss_pred cCCcceEecCCC--CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 68 EEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 68 ~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
.+.+|+||-++- +.+++++--|+ -+---|=+.|.+ .=.+.+++.|+.||++|+-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~--eCaFPVCRpCYE-YERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACN--ECAFPVCRPCYE-YERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEc--cCCCccccchhh-eecccCCccCcccCCcccc
Confidence 456999997652 23444433332 111125567862 2233467899999999984
No 72
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.13 E-value=11 Score=39.33 Aligned_cols=26 Identities=27% Similarity=0.834 Sum_probs=21.0
Q ss_pred cccCCcceEecCCCCCCCCc-ccccCC
Q 001217 66 EEEEEVCRICRNPGDPENPL-RYPCAC 91 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L-~~PC~C 91 (1122)
.++..+|-||+|+-++++.+ ..||.|
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEE
Confidence 35567899999988877665 689999
No 73
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=43.53 E-value=17 Score=47.99 Aligned_cols=54 Identities=15% Similarity=0.399 Sum_probs=33.0
Q ss_pred cCCcceEecCCC--CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 68 EEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 68 ~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+..+|.||-++- +.+++++--|+ -+---|-+.|. +.=...+++.|+.||++|+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~--eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACH--VCGFPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEec--cCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 568999997642 23334432232 11112556887 33344567899999999984
No 74
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.28 E-value=11 Score=41.12 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=36.7
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccc
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKH 120 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~ 120 (1122)
..+++-.|.||++... .|.+.||. |.+=+.|+.++.. ....||.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~--~p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFR--EPVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhh--cCcccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4567799999998764 24667776 5677899999998 6689999993
No 75
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=40.14 E-value=16 Score=30.15 Aligned_cols=22 Identities=27% Similarity=0.860 Sum_probs=16.1
Q ss_pred cccHHHHHHHHHccCCCccccc
Q 001217 97 FVHQDCLLQWLNHSNARQCEVC 118 (1122)
Q Consensus 97 ~vH~~CL~~Wl~~s~~~~CelC 118 (1122)
-+|..|+..+++++.+..||.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999999887789987
No 76
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.19 E-value=22 Score=41.79 Aligned_cols=53 Identities=21% Similarity=0.577 Sum_probs=35.7
Q ss_pred ccCCcceEecCCCCCCC----Cc--ccccCCCCccccccHHHHHHHHHccC-----CCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPEN----PL--RYPCACSGSIKFVHQDCLLQWLNHSN-----ARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~----~L--~~PC~C~Gsi~~vH~~CL~~Wl~~s~-----~~~CelC~~~f~~ 124 (1122)
..+++|-||.+...+-. .+ ..+|+ |.+=..|+.+|.+... .+.||.|+..-.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999987543211 01 23455 4566789999997655 5899999977554
No 77
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=37.87 E-value=33 Score=38.86 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=39.4
Q ss_pred CcceEecCCCCCCCCcccccCCCCccccccHHHHHHHH-Hcc------CCCccccccccee
Q 001217 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWL-NHS------NARQCEVCKHAFS 123 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl-~~s------~~~~CelC~~~f~ 123 (1122)
..|.+|-++.++.++.+.-|.=++.-...|-.||-.=+ ... -...|+.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 68999988765555666777777777789999998833 222 2579999997443
No 78
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=23 Score=40.66 Aligned_cols=46 Identities=26% Similarity=0.687 Sum_probs=28.2
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCcccccccceee
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFSF 124 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~~ 124 (1122)
.++|-||++... .|...+|. |.-|-+-=-.. .++..|.+|+.++.-
T Consensus 7 ~~eC~IC~nt~n--~Pv~l~C~--------HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGN--CPVNLYCF--------HKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCC--cCcccccc--------chhhhhhhcchhhcCCCCCceecCCCCc
Confidence 478999998642 34455554 55553321111 245689999999864
No 79
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=37.09 E-value=36 Score=31.79 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=21.6
Q ss_pred ccCCcceEecCCC--CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
-.+.+|.||-++- +.++.++--|+= .---+-+.|.+-=.+. +++.|+.||++|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~e--C~fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHE--CAFPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SS--S-----HHHHHHHHHT-S-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcc--cCCccchhHHHHHhhc-CcccccccCCCcccc
Confidence 4568999997542 233445444432 1124778897654444 567999999999853
No 80
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=36.52 E-value=12 Score=35.65 Aligned_cols=34 Identities=26% Similarity=0.699 Sum_probs=23.2
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHH
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQ 105 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~ 105 (1122)
+++..|.+|...-..+.=.+.||. +.+|..|..+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 456789999876543322367774 5799999753
No 81
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.48 E-value=15 Score=47.43 Aligned_cols=38 Identities=29% Similarity=0.726 Sum_probs=27.8
Q ss_pred cccCCcceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHHc
Q 001217 66 EEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNH 109 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~ 109 (1122)
-+..+.|.+|-..-- ..|. +.||. |.+|.+||++=...
T Consensus 814 ~ep~d~C~~C~~~ll-~~pF~vf~Cg-----H~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLL-IKPFYVFPCG-----HCFHRDCLIRHVLS 852 (911)
T ss_pred ecCccchHHhcchhh-cCcceeeecc-----chHHHHHHHHHHHc
Confidence 466789999965433 3354 68987 68999999887753
No 82
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=35.51 E-value=17 Score=45.45 Aligned_cols=57 Identities=30% Similarity=0.585 Sum_probs=40.0
Q ss_pred cCCcceEecCCCCCCCCc---ccccCCCCccccccHHHHHHH--H-Hc-----cCCCcccccccceee
Q 001217 68 EEEVCRICRNPGDPENPL---RYPCACSGSIKFVHQDCLLQW--L-NH-----SNARQCEVCKHAFSF 124 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L---~~PC~C~Gsi~~vH~~CL~~W--l-~~-----s~~~~CelC~~~f~~ 124 (1122)
..+.|-||-|++.+.+-- ..-|+=.|+-.-+|..|-++= | ++ .+-+||--|||.|.-
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 459999998876543322 466777777788999997542 1 11 245899999999864
No 83
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.54 E-value=15 Score=31.95 Aligned_cols=42 Identities=21% Similarity=0.559 Sum_probs=25.4
Q ss_pred CcceEecCCCCCCCCcc----cccCCCCccccccHHHHHHHHHccCCCcccccccce
Q 001217 70 EVCRICRNPGDPENPLR----YPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L~----~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1122)
++|.||.+..- +... |-|.| .+|-.+-.+. .+..||+|+.+.
T Consensus 8 dECTICye~pv--dsVlYtCGHMCmC--------y~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPV--DSVLYTCGHMCMC--------YACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcc--hHHHHHcchHHhH--------HHHHHHHHHc-cCCcCcchhhHH
Confidence 88999987432 2232 44555 3674443332 567999998543
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=38 Score=39.36 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=40.5
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
.-+.+...|.+|+.. ..+||.|.-|...+-..|+.+.++ +..+||+=+++-.
T Consensus 295 ~l~~~~~~CpvClk~------r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKK------RQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPAS 346 (357)
T ss_pred cCCCccccChhHHhc------cCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcch
Confidence 445567899999753 457899988877789999999998 4569998776644
No 85
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=32.97 E-value=28 Score=40.44 Aligned_cols=52 Identities=15% Similarity=0.458 Sum_probs=37.9
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
-....+|++|.. +--+...+.-|-|+ +=++||.+-+.. +.+|+.|+-...-+
T Consensus 12 ~n~~itC~LC~G-YliDATTI~eCLHT-----FCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGG-YLIDATTITECLHT-----FCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccc-eeecchhHHHHHHH-----HHHHHHHHHHHH--hccCCccceeccCc
Confidence 456789999954 43344556777764 677999999998 46999999776543
No 86
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.71 E-value=4.2e+02 Score=29.54 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhhhhhcccchHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEee
Q 001217 534 VAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERV-QFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYF 612 (1122)
Q Consensus 534 V~~i~~iEl~vfPl~cG~~LDictlplf~~t~~~r~-~~~~~~p~~s~f~hW~vGt~ym~~fA~fv~~~R~IlRpGVL~F 612 (1122)
|+.++.+||++|=++| +|+ ......++ ......+....+.|-+.+|+.+. +-+|+--+|+|-+-+-.+
T Consensus 5 vf~iL~~Eial~~iL~--------Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~vi-lllfiDsvr~i~~~~~~~- 73 (216)
T KOG1962|consen 5 VFTILYAEIALFLILL--------LPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVI-LLLFIDSVRRIQKYVSEY- 73 (216)
T ss_pred HHHHHHHHHHHHHHHH--------cCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhh-
Confidence 7889999999987776 676 33222222 22244555666777777776664 556777788877444343
Q ss_pred ecCCCCCCCch
Q 001217 613 LRDPADPNYNP 623 (1122)
Q Consensus 613 iRdp~DP~f~p 623 (1122)
..-..|+-+|
T Consensus 74 -~~~~n~~~~~ 83 (216)
T KOG1962|consen 74 -GSMANPTDQP 83 (216)
T ss_pred -hcccCCccch
Confidence 5555565566
No 87
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=30 Score=39.38 Aligned_cols=37 Identities=27% Similarity=0.650 Sum_probs=27.9
Q ss_pred ccCCCCccccccHHHHHHHHHc-----------cCCCcccccccceeeccc
Q 001217 88 PCACSGSIKFVHQDCLLQWLNH-----------SNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 88 PC~C~Gsi~~vH~~CL~~Wl~~-----------s~~~~CelC~~~f~~~~i 127 (1122)
-|-|+- .--.+||.||+.. .++-+||.|+.+|-+..+
T Consensus 322 nc~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 322 NCICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 355654 4668999999963 357899999999987644
No 88
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.88 E-value=5.3e+02 Score=27.57 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHhHH
Q 001217 534 VAFLLVIELGVFPLMC 549 (1122)
Q Consensus 534 V~~i~~iEl~vfPl~c 549 (1122)
|+.++.+||+++=++|
T Consensus 8 vf~~L~~Ei~~~~lL~ 23 (192)
T PF05529_consen 8 VFGLLYAEIAVLLLLV 23 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788889998887665
No 90
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=26.75 E-value=38 Score=38.06 Aligned_cols=28 Identities=29% Similarity=0.697 Sum_probs=18.2
Q ss_pred CCCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001217 90 ACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1122)
Q Consensus 90 ~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1122)
.|+. -|+|-+|.- |+ -+++++|+-||..
T Consensus 241 nCkr--EWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKR--EWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCch--hheeccccc--cCCCCCCcEeCHHhHhc
Confidence 4554 378888832 12 2478999999853
No 91
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.57 E-value=46 Score=39.98 Aligned_cols=54 Identities=26% Similarity=0.514 Sum_probs=36.1
Q ss_pred CcccccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 61 IEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 61 ~~~~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+..++.-.+=.|-||..-- .+|..+||.=+- =+.||++=+. .+..||+|++.+.
T Consensus 76 s~~~~~~sef~c~vc~~~l--~~pv~tpcghs~-----c~~Cl~r~ld--~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRAL--YPPVVTPCGHSF-----CLECLDRSLD--QETECPLCRDELV 129 (398)
T ss_pred ccCccccchhhhhhhHhhc--CCCccccccccc-----cHHHHHHHhc--cCCCCcccccccc
Confidence 3333445667899996532 357888987443 3448787333 5679999999985
No 92
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=23.66 E-value=6.8e+02 Score=28.78 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhccCCeE--e-eecCCCCCCCchhhhhhhchHHHHHHHHHHHHHH
Q 001217 589 VYMLQISIFVSLLRGVLRNGVL--Y-FLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAV 645 (1122)
Q Consensus 589 ~ym~~fA~fv~~~R~IlRpGVL--~-FiRdp~DP~f~pi~d~l~~p~~~qlrri~~S~~v 645 (1122)
..+++...++.-+.++.=-|+. | |-++..|..-+|+...+.+-+..|+.-++++.++
T Consensus 109 f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi~~gSli 168 (334)
T PF04515_consen 109 FSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSICFGSLI 168 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456667777778888878874 4 5555436666788888899999898887654433
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=69 Score=35.38 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=36.8
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc------CCCcccccccce
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS------NARQCEVCKHAF 122 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s------~~~~CelC~~~f 122 (1122)
+...-||.|-..-.+++....-|- +.+|=.||.+|-..= ..-.|+-|.++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 455789999766555555444443 689999999998642 246899999874
No 94
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=21.66 E-value=37 Score=40.17 Aligned_cols=49 Identities=31% Similarity=0.727 Sum_probs=37.8
Q ss_pred cccCCcceEecCCCC-CCCCc-ccccCCCCccccccHHHHHHHHHccCCCcccccc
Q 001217 66 EEEEEVCRICRNPGD-PENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~-~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1122)
++-+-.|-.|-+... .++.| -.||. |.+|..|+.+.+...+.++||-|+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHH
Confidence 455688999965432 22233 47886 789999999999988899999999
No 95
>PF04641 Rtf2: Rtf2 RING-finger
Probab=20.90 E-value=1.3e+02 Score=34.02 Aligned_cols=58 Identities=19% Similarity=0.503 Sum_probs=38.6
Q ss_pred cccCCcceEecCCCCCCCCc--ccccCCCCccccccHHHHHHHHHccCCCcccccccceeecccccCC
Q 001217 66 EEEEEVCRICRNPGDPENPL--RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAEN 131 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L--~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~ 131 (1122)
.+..-.|.|+..+.+..-+. +.||.| -+-+.||.+= . ....|++|+.+|.-..+-.-+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~-k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL-K--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh-c--ccccccccCCccccCCEEEec
Confidence 34456777776554433343 578888 5778888876 2 346799999999976554333
No 96
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=20.14 E-value=70 Score=41.83 Aligned_cols=26 Identities=38% Similarity=0.728 Sum_probs=17.9
Q ss_pred CCcccccccCCcceEecCCCC--CCCCc
Q 001217 60 DIEEEEEEEEEVCRICRNPGD--PENPL 85 (1122)
Q Consensus 60 ~~~~~~~~~~~~CRIC~~~~~--~~~~L 85 (1122)
+.++-++|++-.|.||+++.. +++.|
T Consensus 459 ~~~~l~ee~gl~C~ICrEGy~~~p~~~l 486 (802)
T PF13764_consen 459 NMEDLEEEDGLTCCICREGYKFRPDEVL 486 (802)
T ss_pred CcccccccCCCeEEEcCCccccCCccce
Confidence 334445688899999999874 44444
Done!