Query 001217
Match_columns 1122
No_of_seqs 318 out of 934
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.6 4.2E-17 1.4E-21 140.3 3.6 59 65-125 2-60 (60)
2 2d8s_A Cellular modulator of i 99.6 6.3E-16 2.2E-20 140.4 4.7 64 66-129 12-75 (80)
3 2ep4_A Ring finger protein 24; 97.9 8.2E-06 2.8E-10 71.7 4.5 52 65-123 11-63 (74)
4 2kiz_A E3 ubiquitin-protein li 97.9 8.5E-06 2.9E-10 70.7 3.9 54 64-124 9-63 (69)
5 2ect_A Ring finger protein 126 97.9 7.1E-06 2.4E-10 72.8 3.5 57 64-127 10-67 (78)
6 2ecl_A Ring-box protein 2; RNF 97.8 7.9E-06 2.7E-10 73.7 2.5 53 68-126 14-78 (81)
7 2ct0_A Non-SMC element 1 homol 97.7 2E-05 6.8E-10 70.5 4.5 54 66-125 12-65 (74)
8 2ct2_A Tripartite motif protei 97.7 2.5E-05 8.6E-10 70.5 4.4 57 65-126 11-70 (88)
9 2yur_A Retinoblastoma-binding 97.7 3.3E-05 1.1E-09 68.2 4.6 53 65-124 11-64 (74)
10 1x4j_A Ring finger protein 38; 97.6 1.5E-05 5.2E-10 70.3 1.6 51 66-123 20-71 (75)
11 2l0b_A E3 ubiquitin-protein li 97.6 1.9E-05 6.3E-10 72.8 2.1 51 66-123 37-88 (91)
12 2ysl_A Tripartite motif-contai 97.6 3.9E-05 1.3E-09 67.0 3.6 55 64-125 15-70 (73)
13 2ecm_A Ring finger and CHY zin 97.6 2.7E-05 9.4E-10 64.2 2.5 50 67-123 3-54 (55)
14 3dpl_R Ring-box protein 1; ubi 97.5 4E-05 1.4E-09 73.0 3.8 52 68-126 36-103 (106)
15 1iym_A EL5; ring-H2 finger, ub 97.5 2.9E-05 1E-09 64.1 2.1 51 67-123 3-54 (55)
16 2ecy_A TNF receptor-associated 97.5 4.7E-05 1.6E-09 65.5 3.4 55 65-127 11-65 (66)
17 1v87_A Deltex protein 2; ring- 97.5 4.7E-05 1.6E-09 72.4 3.6 52 69-125 25-95 (114)
18 2d8t_A Dactylidin, ring finger 97.5 3.1E-05 1.1E-09 67.7 2.1 53 66-127 12-64 (71)
19 2csy_A Zinc finger protein 183 97.5 6.6E-05 2.3E-09 67.2 4.1 51 64-123 10-60 (81)
20 2ea6_A Ring finger protein 4; 97.5 3.2E-05 1.1E-09 66.5 1.8 51 66-123 12-67 (69)
21 2ecw_A Tripartite motif-contai 97.3 0.00027 9.1E-09 63.0 5.8 53 66-125 16-72 (85)
22 2ecn_A Ring finger protein 141 97.3 5.3E-05 1.8E-09 65.8 0.8 49 66-124 12-60 (70)
23 2djb_A Polycomb group ring fin 97.3 0.00017 6E-09 63.0 4.0 53 65-126 11-64 (72)
24 2ysj_A Tripartite motif-contai 97.2 0.00029 1E-08 59.8 5.0 48 64-118 15-63 (63)
25 2ecv_A Tripartite motif-contai 97.2 0.00047 1.6E-08 61.4 6.1 53 66-125 16-72 (85)
26 1e4u_A Transcriptional repress 97.2 0.00038 1.3E-08 62.6 5.3 58 67-128 9-66 (78)
27 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.00016 5.5E-09 81.2 3.4 61 64-124 303-373 (381)
28 3ztg_A E3 ubiquitin-protein li 97.1 0.0002 6.9E-09 65.4 3.3 53 64-123 8-61 (92)
29 2ecj_A Tripartite motif-contai 97.1 0.00034 1.2E-08 58.1 4.3 46 66-118 12-58 (58)
30 4a0k_B E3 ubiquitin-protein li 97.1 8E-05 2.7E-09 72.2 0.4 51 68-125 47-113 (117)
31 1chc_A Equine herpes virus-1 r 97.0 0.00028 9.4E-09 60.8 2.8 50 67-124 3-52 (68)
32 3ng2_A RNF4, snurf, ring finge 97.0 0.00019 6.6E-09 62.1 1.2 53 66-125 7-64 (71)
33 2egp_A Tripartite motif-contai 96.9 0.00025 8.4E-09 62.7 1.8 54 66-126 9-67 (79)
34 2xeu_A Ring finger protein 4; 96.7 0.00028 9.7E-09 59.6 0.5 51 68-125 2-57 (64)
35 1t1h_A Gspef-atpub14, armadill 96.7 0.0012 4.2E-08 58.3 4.5 52 66-125 5-56 (78)
36 2ckl_B Ubiquitin ligase protei 96.4 0.0013 4.3E-08 66.8 2.6 51 67-125 52-103 (165)
37 3fl2_A E3 ubiquitin-protein li 96.3 0.0012 4.1E-08 63.8 2.1 50 67-124 50-99 (124)
38 3lrq_A E3 ubiquitin-protein li 96.3 0.0011 3.9E-08 61.8 1.5 54 65-126 18-72 (100)
39 2y43_A E3 ubiquitin-protein li 96.2 0.0018 6.2E-08 60.0 2.3 49 67-124 20-69 (99)
40 1jm7_A BRCA1, breast cancer ty 96.1 0.0038 1.3E-07 58.7 4.4 52 67-125 19-71 (112)
41 4ayc_A E3 ubiquitin-protein li 96.1 0.00086 2.9E-08 66.2 -0.2 49 67-124 51-99 (138)
42 1g25_A CDK-activating kinase a 96.1 0.002 6.8E-08 55.0 1.9 52 68-125 2-56 (65)
43 1z6u_A NP95-like ring finger p 96.0 0.0019 6.5E-08 65.0 1.5 51 67-125 76-126 (150)
44 1rmd_A RAG1; V(D)J recombinati 95.8 0.0033 1.1E-07 59.9 2.2 53 66-126 20-72 (116)
45 2y1n_A E3 ubiquitin-protein li 95.8 0.0037 1.3E-07 71.9 2.9 52 68-127 331-382 (389)
46 2ckl_A Polycomb group ring fin 95.6 0.0034 1.2E-07 59.1 1.5 51 66-125 12-63 (108)
47 3hct_A TNF receptor-associated 95.3 0.0058 2E-07 58.6 2.1 54 66-127 15-68 (118)
48 3l11_A E3 ubiquitin-protein li 95.3 0.0021 7.1E-08 61.2 -1.2 50 67-124 13-62 (115)
49 2ea5_A Cell growth regulator w 95.1 0.016 5.5E-07 50.5 4.0 54 63-129 9-64 (68)
50 4ap4_A E3 ubiquitin ligase RNF 95.0 0.0038 1.3E-07 60.0 -0.2 53 67-126 5-62 (133)
51 4ic3_A E3 ubiquitin-protein li 95.0 0.0019 6.5E-08 57.1 -2.3 46 66-124 21-67 (74)
52 1bor_A Transcription factor PM 94.7 0.0078 2.7E-07 50.2 1.0 47 66-124 3-49 (56)
53 3nw0_A Non-structural maintena 94.3 0.022 7.7E-07 61.5 3.7 52 67-125 178-230 (238)
54 2vje_B MDM4 protein; proto-onc 94.2 0.013 4.4E-07 50.2 1.3 50 65-123 3-55 (63)
55 4ap4_A E3 ubiquitin ligase RNF 93.9 0.012 4E-07 56.5 0.3 52 67-125 70-126 (133)
56 1jm7_B BARD1, BRCA1-associated 93.6 0.024 8.1E-07 54.2 2.0 48 66-124 19-67 (117)
57 1wgm_A Ubiquitin conjugation f 93.6 0.047 1.6E-06 51.0 3.9 51 67-125 20-70 (98)
58 2c2l_A CHIP, carboxy terminus 93.3 0.037 1.3E-06 59.7 3.2 53 66-126 205-257 (281)
59 2kre_A Ubiquitin conjugation f 93.2 0.063 2.2E-06 50.3 4.1 51 66-125 26-76 (100)
60 2kr4_A Ubiquitin conjugation f 93.2 0.059 2E-06 48.8 3.7 51 66-125 11-61 (85)
61 2ecg_A Baculoviral IAP repeat- 93.1 0.02 6.9E-07 50.4 0.6 45 67-124 23-68 (75)
62 3knv_A TNF receptor-associated 92.7 0.026 8.8E-07 56.1 0.7 52 65-124 27-78 (141)
63 2vje_A E3 ubiquitin-protein li 91.9 0.062 2.1E-06 46.0 2.1 48 67-123 6-56 (64)
64 2f42_A STIP1 homology and U-bo 90.6 0.099 3.4E-06 54.2 2.4 52 66-125 103-154 (179)
65 3hcs_A TNF receptor-associated 90.3 0.09 3.1E-06 53.3 1.7 53 66-126 15-67 (170)
66 3htk_C E3 SUMO-protein ligase 88.0 0.25 8.5E-06 54.0 3.1 54 66-126 178-234 (267)
67 2yu4_A E3 SUMO-protein ligase 87.6 0.26 8.8E-06 45.3 2.6 51 67-124 5-63 (94)
68 3t6p_A Baculoviral IAP repeat- 85.9 0.096 3.3E-06 59.5 -1.5 45 67-124 293-338 (345)
69 2lri_C Autoimmune regulator; Z 85.4 0.32 1.1E-05 42.4 1.8 51 64-121 7-59 (66)
70 1wim_A KIAA0161 protein; ring 84.4 0.34 1.1E-05 44.3 1.7 52 68-124 4-64 (94)
71 1wev_A Riken cDNA 1110020M19; 83.8 0.13 4.4E-06 47.2 -1.4 58 65-125 12-76 (88)
72 2yho_A E3 ubiquitin-protein li 83.6 0.13 4.5E-06 46.0 -1.4 51 66-129 15-67 (79)
73 2l43_A N-teminal domain from h 83.4 0.27 9.1E-06 45.2 0.5 54 66-122 22-76 (88)
74 1wen_A Inhibitor of growth fam 79.0 0.79 2.7E-05 40.4 1.9 51 64-121 11-65 (71)
75 2ku3_A Bromodomain-containing 79.0 0.35 1.2E-05 42.7 -0.3 53 66-121 13-66 (71)
76 2bay_A PRE-mRNA splicing facto 76.2 0.99 3.4E-05 38.4 1.7 48 70-126 4-52 (61)
77 2k16_A Transcription initiatio 75.7 0.41 1.4E-05 42.3 -0.9 55 65-123 14-70 (75)
78 1weu_A Inhibitor of growth fam 73.5 1.2 4E-05 41.3 1.5 49 66-121 33-85 (91)
79 3u5n_A E3 ubiquitin-protein li 67.3 0.57 1.9E-05 49.2 -2.3 52 65-123 3-56 (207)
80 1wep_A PHF8; structural genomi 58.6 4.2 0.00014 36.2 2.1 55 65-123 8-65 (79)
81 2e6r_A Jumonji/ARID domain-con 58.0 0.92 3.1E-05 41.9 -2.4 52 66-121 13-66 (92)
82 2l5u_A Chromodomain-helicase-D 57.3 2.7 9.2E-05 35.7 0.5 49 66-121 8-58 (61)
83 3ql9_A Transcriptional regulat 56.0 6.8 0.00023 38.4 3.2 50 64-120 52-110 (129)
84 2lbm_A Transcriptional regulat 54.2 6.3 0.00021 39.3 2.7 48 65-119 59-115 (142)
85 2ri7_A Nucleosome-remodeling f 51.4 2.4 8.3E-05 43.0 -0.8 53 66-122 5-60 (174)
86 1mm2_A MI2-beta; PHD, zinc fin 50.7 2.2 7.7E-05 36.2 -1.0 49 66-121 6-56 (61)
87 1weo_A Cellulose synthase, cat 49.6 31 0.0011 31.7 6.1 56 66-124 13-70 (93)
88 3kv5_D JMJC domain-containing 49.3 2.3 8E-05 50.4 -1.6 52 67-122 35-89 (488)
89 1we9_A PHD finger family prote 47.2 3 0.0001 35.5 -0.8 53 66-121 3-58 (64)
90 2ysm_A Myeloid/lymphoid or mix 46.3 3.5 0.00012 38.9 -0.6 39 66-108 4-42 (111)
91 3o36_A Transcription intermedi 45.9 2.7 9.2E-05 43.2 -1.5 49 68-123 3-53 (184)
92 2vnf_A ING 4, P29ING4, inhibit 43.7 2.2 7.5E-05 36.2 -2.2 48 66-120 7-58 (60)
93 2vpb_A Hpygo1, pygopus homolog 42.7 8.6 0.00029 33.2 1.4 51 66-119 5-64 (65)
94 2yt5_A Metal-response element- 42.6 2.4 8.1E-05 36.3 -2.2 54 66-122 3-62 (66)
95 1wee_A PHD finger family prote 42.0 7.7 0.00026 33.8 1.0 58 60-121 7-66 (72)
96 2jmi_A Protein YNG1, ING1 homo 41.8 2.6 8.8E-05 38.9 -2.2 49 65-120 22-75 (90)
97 2yql_A PHD finger protein 21A; 40.2 2.8 9.5E-05 34.9 -2.1 48 66-120 6-55 (56)
98 4gne_A Histone-lysine N-methyl 39.8 6.4 0.00022 37.4 0.2 46 65-117 11-58 (107)
99 1f62_A Transcription factor WS 39.2 7.9 0.00027 31.3 0.6 46 71-120 2-49 (51)
100 1xwh_A Autoimmune regulator; P 36.5 3.7 0.00013 35.4 -1.9 49 66-121 5-55 (66)
101 3v43_A Histone acetyltransfera 36.4 14 0.00046 35.1 1.8 35 67-104 3-42 (112)
102 2kwj_A Zinc finger protein DPF 35.2 8.9 0.0003 36.5 0.3 34 70-106 2-41 (114)
103 2lv9_A Histone-lysine N-methyl 33.0 9.4 0.00032 35.4 0.1 48 68-120 27-75 (98)
104 3ask_A E3 ubiquitin-protein li 32.4 9.9 0.00034 40.6 0.2 49 69-121 174-225 (226)
105 2puy_A PHD finger protein 21A; 32.4 3.9 0.00013 34.5 -2.4 49 67-122 3-53 (60)
106 3c6w_A P28ING5, inhibitor of g 32.0 4.4 0.00015 34.3 -2.1 48 66-120 6-57 (59)
107 1fp0_A KAP-1 corepressor; PHD 32.0 9.8 0.00033 34.9 0.0 52 65-123 21-74 (88)
108 3v43_A Histone acetyltransfera 31.2 8.5 0.00029 36.5 -0.6 49 70-121 62-112 (112)
109 1wem_A Death associated transc 30.7 33 0.0011 30.0 3.2 51 67-122 14-71 (76)
110 2ko5_A Ring finger protein Z; 29.3 60 0.0021 30.2 4.7 48 68-125 27-74 (99)
111 2ro1_A Transcription intermedi 29.2 9.4 0.00032 39.5 -0.7 48 69-123 2-51 (189)
112 3i2d_A E3 SUMO-protein ligase 26.0 53 0.0018 37.5 4.6 43 82-127 256-303 (371)
113 1wil_A KIAA1045 protein; ring 25.7 63 0.0021 29.5 4.1 54 66-124 12-79 (89)
114 1x4i_A Inhibitor of growth pro 23.8 11 0.00039 32.9 -1.1 52 66-124 3-58 (70)
115 2g6q_A Inhibitor of growth pro 22.4 4.7 0.00016 34.5 -3.7 49 66-121 8-60 (62)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.65 E-value=4.2e-17 Score=140.31 Aligned_cols=59 Identities=32% Similarity=0.763 Sum_probs=52.5
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++++++.||||++++ ++++++||+|+||+++||++||.+|++++++.+||+|+++|+++
T Consensus 2 e~~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60 (60)
T ss_dssp TTCSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred CCCCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeecC
Confidence 356778999999864 45789999999999999999999999999899999999999863
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-16 Score=140.43 Aligned_cols=64 Identities=45% Similarity=1.038 Sum_probs=57.3
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYA 129 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~ 129 (1122)
+++++.|+||+++++++++++.||+|+|++|++|++||++|+..+++.+||+|+++|.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 4556899999998877789999999999999999999999999998889999999999876543
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=8.2e-06 Score=71.72 Aligned_cols=52 Identities=29% Similarity=0.753 Sum_probs=39.2
Q ss_pred ccccCCcceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+.+++..|.||++.......+ ..||. |.+|..|+.+|++.++ .||+|++++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccc
Confidence 345568999999876543333 34653 6799999999998753 8999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=8.5e-06 Score=70.66 Aligned_cols=54 Identities=33% Similarity=0.741 Sum_probs=41.1
Q ss_pred cccccCCcceEecCCCCCC-CCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 64 EEEEEEEVCRICRNPGDPE-NPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~-~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
++.++...|.||++....+ .+...||. |.+|..|+.+|++.++ +||+|+.++..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 3455668999999876543 34457764 6799999999998754 79999998764
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.85 E-value=7.1e-06 Score=72.85 Aligned_cols=57 Identities=21% Similarity=0.644 Sum_probs=42.8
Q ss_pred cccccCCcceEecCCCCCCCC-cccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001217 64 EEEEEEEVCRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1122)
+..++...|.||++....... ...||. |.+|..|+.+|++.+ .+|++|+.++....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNT 67 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCccc
Confidence 345667899999987654333 345764 679999999999754 699999999876543
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=7.9e-06 Score=73.75 Aligned_cols=53 Identities=23% Similarity=0.661 Sum_probs=38.0
Q ss_pred cCCcceEecCCCCC-----------CC-CcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 68 EEEVCRICRNPGDP-----------EN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~-----------~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
+++.|.||+++.++ ++ +...| .|. |.+|.+||.+|++.+ .+||+|++++.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~---H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN---HSFHNCCMSLWVKQN--NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS---CEEEHHHHHHHTTTC--CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCC---CccChHHHHHHHHhC--CCCCCcCCCcchhh
Confidence 34668888876532 22 23333 342 689999999999876 49999999998754
No 7
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=2e-05 Score=70.47 Aligned_cols=54 Identities=15% Similarity=0.459 Sum_probs=41.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++..+.|-||++...++. -| ...-+-+|..|+.+|++.+++.+||+|++++.+.
T Consensus 12 ~~~i~~C~IC~~~i~~g~----~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ----SC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE----EC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCC----cc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 356688999998765432 23 2334679999999999988778999999998764
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=2.5e-05 Score=70.53 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=43.9
Q ss_pred ccccCCcceEecCCCCCCC--CcccccCCCCccccccHHHHHHHHHcc-CCCcccccccceeecc
Q 001217 65 EEEEEEVCRICRNPGDPEN--PLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFSP 126 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~~ 126 (1122)
..++...|.||++....++ |...||. |.+|..|+.+|++.+ +...||+|+..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3456688999998765433 6667763 789999999999876 4579999999987653
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.66 E-value=3.3e-05 Score=68.25 Aligned_cols=53 Identities=21% Similarity=0.480 Sum_probs=41.9
Q ss_pred ccccCCcceEecCCCCCCCCcccc-cCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYP-CACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~P-C~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+.+++..|.||++... +|...| |. |.+|+.|+.+|++.++...||+|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCT--TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHh--CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3456689999987653 577777 54 67999999999998777899999997643
No 10
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=1.5e-05 Score=70.32 Aligned_cols=51 Identities=24% Similarity=0.671 Sum_probs=39.2
Q ss_pred cccCCcceEecCCCCCCCC-cccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 66 EEEEEVCRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
.++...|.||+++.+.++. ...||. |.+|.+|+.+|++.+ .+||+|++++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 4566889999987654333 356764 689999999999875 58999998874
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.59 E-value=1.9e-05 Score=72.76 Aligned_cols=51 Identities=29% Similarity=0.739 Sum_probs=39.2
Q ss_pred cccCCcceEecCCCCCCC-CcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 66 EEEEEVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
.+++..|.||+++...++ +...||. |.+|..|+.+|++.+ ..||+|++++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 456688999998765443 3456765 689999999999754 59999998874
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=3.9e-05 Score=67.00 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=42.2
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc-cCCCcccccccceeec
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH-SNARQCEVCKHAFSFS 125 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~-s~~~~CelC~~~f~~~ 125 (1122)
++.++...|.||++... +|...||. |.+|..|+.+|++. +++..||+|+.++...
T Consensus 15 ~~~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCBCTTTCSBCS--SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred HhCccCCEeccCCcccC--CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 33456789999998653 56666764 67999999999985 3567999999998653
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.56 E-value=2.7e-05 Score=64.19 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=38.7
Q ss_pred ccCCcceEecCCCCC--CCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 67 EEEEVCRICRNPGDP--ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~--~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+++..|.||++.... +.+...||. |.+|.+|+.+|++.+ .+||+|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 345789999987543 234567764 689999999999986 69999998763
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.55 E-value=4e-05 Score=72.99 Aligned_cols=52 Identities=23% Similarity=0.508 Sum_probs=38.2
Q ss_pred cCCcceEecCCCCCCC---------------Cc-ccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 68 EEEVCRICRNPGDPEN---------------PL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~---------------~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
+.+.|-||++..+... ++ ..||. |.+|..|+.+|+..+ .+||+|+.+|.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEFQK 103 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTTC--SBCSSSCSBCCEEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHcC--CcCcCCCCcceeec
Confidence 4578999998654221 12 24544 789999999999874 68999999987753
No 15
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.52 E-value=2.9e-05 Score=64.11 Aligned_cols=51 Identities=20% Similarity=0.588 Sum_probs=37.7
Q ss_pred ccCCcceEecCCCCCCC-CcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 67 EEEEVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+++..|.||+++.+.++ +...| .|. |.+|.+|+.+|++.+ .+||+|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~C~---H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP-RCG---HGFHAECVDMWLGSH--STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS-SSC---CEECTTHHHHTTTTC--CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECC-CCC---CcccHHHHHHHHHcC--CcCcCCCCEeE
Confidence 45578999998765443 34455 232 679999999999764 58999998764
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=4.7e-05 Score=65.50 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=41.2
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1122)
..++...|.||++.. .+|...||. |.+|+.|+.+|++ +++..|++|+.++....+
T Consensus 11 ~~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVL--CSPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEE--SSCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHh--cCeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 345568899998754 346666664 6799999999997 345689999999876544
No 17
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.50 E-value=4.7e-05 Score=72.44 Aligned_cols=52 Identities=29% Similarity=0.536 Sum_probs=38.0
Q ss_pred CCcceEecCCCCCCC------------C--c--ccccCCCCccccccHHHHHHHHHc---cCCCcccccccceeec
Q 001217 69 EEVCRICRNPGDPEN------------P--L--RYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFSFS 125 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~------------~--L--~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~~~ 125 (1122)
++.|.||++..+... + . ..||. |.+|.+||.+|+.. +++..||+|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998653211 1 1 35554 78999999999975 3467999999999754
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=3.1e-05 Score=67.66 Aligned_cols=53 Identities=17% Similarity=0.412 Sum_probs=41.4
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1122)
.++...|.||++.. .++...||. |.+|..|+.+|+..+ ..|++|+.++....+
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHHHH
T ss_pred CCCCCCCccCCccc--CCCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHhhc
Confidence 45567899999764 356667764 679999999999765 699999999875443
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=6.6e-05 Score=67.20 Aligned_cols=51 Identities=29% Similarity=0.648 Sum_probs=40.5
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
++.++...|.||++.. .+|...||. |.+|..|+.+|++. ...||+|+.++.
T Consensus 10 ~~~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAF--QNPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBC--CSEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchh--cCeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 4455668999998765 357777775 67999999999976 458999999985
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=3.2e-05 Score=66.53 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=38.0
Q ss_pred cccCCcceEecCCCCC----CC-CcccccCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 66 EEEEEVCRICRNPGDP----EN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~----~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
.++...|.||++.... ++ +...||. |.+|..|+.+|++.+ ..||+|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC--CCCCCCCCccC
Confidence 4566889999986431 11 1456664 689999999999873 59999998874
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.30 E-value=0.00027 Score=63.00 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=41.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc----CCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS----NARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s----~~~~CelC~~~f~~~ 125 (1122)
.++...|.||++.. .+|...||. |.+|..|+.+|+..+ +...|++|+.++...
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELL--KEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCC--SSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhh--CcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 35567899998764 346667764 679999999999885 378999999998754
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=5.3e-05 Score=65.76 Aligned_cols=49 Identities=31% Similarity=0.713 Sum_probs=38.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
.++...|.||++.... ...||. |.+|..|+.+|+. ++..||+|+.++.-
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS---EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC---cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 3556899999986543 667874 6799999999998 45799999988763
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=63.05 Aligned_cols=53 Identities=15% Similarity=0.375 Sum_probs=40.4
Q ss_pred ccccCCcceEecCCCCCCCCcc-cccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 65 EEEEEEVCRICRNPGDPENPLR-YPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~-~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
+.++...|.||++... +|.. .||. |.+|..|+.+|++. +..||+|+..+....
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLI--DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCS--SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHH--CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCccc
Confidence 3456689999987643 3554 3765 67999999999976 369999999987643
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00029 Score=59.84 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=36.9
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc-CCCccccc
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVC 118 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC 118 (1122)
+..+++..|.||++... +|...||. |.+|+.|+.+|++.+ ++.+||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCS--SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhC--CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 33456789999997653 57767764 679999999999853 46789998
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00047 Score=61.38 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=41.7
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc----cCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH----SNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~----s~~~~CelC~~~f~~~ 125 (1122)
.++...|.||++... +|...||. |.+|..|+.+|+.. .+...|++|+..+...
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccC--CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 455688999998653 46666764 67999999999987 3468999999998754
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.17 E-value=0.00038 Score=62.60 Aligned_cols=58 Identities=19% Similarity=0.555 Sum_probs=46.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecccc
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVY 128 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy 128 (1122)
+++..|.||++..+.+++...||.|. |.+++.|+.++... +...||+|+..|...++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 45678999999765556778899994 56999999999764 457999999999876654
No 27
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.16 E-value=0.00016 Score=81.22 Aligned_cols=61 Identities=28% Similarity=0.499 Sum_probs=44.1
Q ss_pred cccccCCcceEecCCCCCCCCc-ccccCCCCccccccHHHHHHHHHccCC---------Ccccccccceee
Q 001217 64 EEEEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNA---------RQCEVCKHAFSF 124 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~---------~~CelC~~~f~~ 124 (1122)
+++++...|-||++...+++.+ ...|.-..+.+.+|+.||.+|++..++ ..||.|+++.+.
T Consensus 303 e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 303 EEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3456778999999876543444 345754444578999999999986532 589999997753
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.14 E-value=0.0002 Score=65.41 Aligned_cols=53 Identities=21% Similarity=0.515 Sum_probs=42.7
Q ss_pred cccccCCcceEecCCCCCCCCcccc-cCCCCccccccHHHHHHHHHccCCCccccccccee
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYP-CACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~P-C~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
++.+++-.|.||++... +|...| |. |.+++.|+.+|+..+++..||+|+.++.
T Consensus 8 ~~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECS--SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhc--CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34566789999997543 577777 53 6799999999999887789999999874
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.00034 Score=58.05 Aligned_cols=46 Identities=22% Similarity=0.619 Sum_probs=35.6
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc-cCCCccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH-SNARQCEVC 118 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~-s~~~~CelC 118 (1122)
.++...|.||++... +|...||. |.+|..|+.+|++. +++..||+|
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS--SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC--ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 456689999997653 46667764 67999999999875 456799998
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.12 E-value=8e-05 Score=72.22 Aligned_cols=51 Identities=24% Similarity=0.540 Sum_probs=0.9
Q ss_pred cCCcceEecCCCCCC--------------C-Cc-ccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 68 EEEVCRICRNPGDPE--------------N-PL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~--------------~-~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
+.+.|-||+++.+.. + ++ ..||. |.+|..|+.+|++.+ .+||+|+.+|.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEFQ 113 (117)
T ss_dssp CC------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeeee
Confidence 447899999875421 1 11 12443 689999999999874 5899999998764
No 31
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.02 E-value=0.00028 Score=60.76 Aligned_cols=50 Identities=22% Similarity=0.610 Sum_probs=38.3
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+++..|.||++... +.....||. |.+|..|+.+|++.+ ..||+|+.++..
T Consensus 3 ~~~~~C~IC~~~~~-~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS-NYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC-SCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc-CCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 45578999998653 213567765 679999999999765 599999998763
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.95 E-value=0.00019 Score=62.09 Aligned_cols=53 Identities=17% Similarity=0.449 Sum_probs=39.1
Q ss_pred cccCCcceEecCCCCC----CC-CcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDP----EN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~----~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
.+++..|.||++.... ++ ....||. |.+|..|+.+|++.+ .+||+|+.++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 3456789999976421 11 2456664 679999999999865 5999999998754
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.94 E-value=0.00025 Score=62.73 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=42.1
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc-----CCCcccccccceeecc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-----NARQCEVCKHAFSFSP 126 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-----~~~~CelC~~~f~~~~ 126 (1122)
.+++..|.||++... +|...||. |.+|..|+.+|++.+ +...||+|+.++....
T Consensus 9 ~~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLT--EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECS--SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccC--CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 455688999997653 46666764 679999999999874 3679999999987643
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.74 E-value=0.00028 Score=59.58 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=37.6
Q ss_pred cCCcceEecCCCCC-----CCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 68 EEEVCRICRNPGDP-----ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~-----~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++..|.||++.... ..+...||. |.+|.+|+.+|++.+ ..||+|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHcC--CCCCCCCccCCcc
Confidence 45789999976431 112456664 679999999999874 5999999988643
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.71 E-value=0.0012 Score=58.26 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=41.0
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..++-.|.||++.. .+|...||. |.+++.|+.+|++. ++.+||+|+.++...
T Consensus 5 ~~~~~~C~IC~~~~--~~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELM--KDPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCC--SSEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccc--cCCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCChh
Confidence 45668999998754 357777764 67999999999974 357999999998754
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.36 E-value=0.0013 Score=66.80 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=38.5
Q ss_pred ccCCcceEecCCCCCCCCccc-ccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++...|.||++... +|... ||. |.+|..|+.+|+..+ +..||+|+.++.-.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECL-----HRFCADCIITALRSG-NKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHHTT-CCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhh--CcCEeCCCC-----ChhHHHHHHHHHHhC-cCCCCCCCCcCCCc
Confidence 45578999987643 35543 554 679999999999853 46899999998543
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.33 E-value=0.0012 Score=63.76 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=39.7
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
++...|.||++... +|...||. |.+|..|+.+|+.. +...||+|+..+..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 45579999987653 57777764 67999999999984 44699999999865
No 38
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.27 E-value=0.0011 Score=61.81 Aligned_cols=54 Identities=22% Similarity=0.500 Sum_probs=42.0
Q ss_pred ccccCCcceEecCCCCCCCCcc-cccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 65 EEEEEEVCRICRNPGDPENPLR-YPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~-~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
.-+++..|.||++... +|.. .||. |.+|..|+.+|++.++ ..||+|+..+....
T Consensus 18 ~l~~~~~C~IC~~~~~--~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLR--DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCGGG
T ss_pred cCCCCCCCccCCcccc--CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCHHH
Confidence 3456689999997643 4665 6664 7799999999999864 69999999997544
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.17 E-value=0.0018 Score=59.96 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=38.2
Q ss_pred ccCCcceEecCCCCCCCCccc-ccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
++...|.||++... +|... ||. |.+|..|+.+|+..+ ..||+|+..+..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCCcccCChhhC--CcCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 45688999987653 45544 664 679999999999854 699999998865
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.13 E-value=0.0038 Score=58.72 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=40.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHcc-CCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~ 125 (1122)
++...|.||++.. .+|...||. |.+|..|+.+|+..+ +...||+|+..+...
T Consensus 19 ~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELI--KEPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCC--SSCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhh--cCeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3457899998754 356667764 679999999999875 356899999988754
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.12 E-value=0.00086 Score=66.21 Aligned_cols=49 Identities=22% Similarity=0.583 Sum_probs=38.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+++-.|.||++.. .+|...||. |.+|..|+.+|+..+ ..||+|+.++.-
T Consensus 51 ~~~~~C~iC~~~~--~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYF--IEAVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBC--SSEEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred cccCCCcccCccc--CCceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence 3446899998765 357777864 679999999999764 589999998753
No 42
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.07 E-value=0.002 Score=55.05 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=37.0
Q ss_pred cCCcceEecC-CCC-CCCC-cccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 68 EEEVCRICRN-PGD-PENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 68 ~~~~CRIC~~-~~~-~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++..|.||++ ... +..+ ...||. |.+|++|+.+|+.. ++..|++|+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 3578999987 322 2111 346765 67999999999875 356899999998643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.97 E-value=0.0019 Score=64.95 Aligned_cols=51 Identities=24% Similarity=0.545 Sum_probs=40.2
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++.-.|.||++.. .+|...||. |.++..|+.+|+.. +...||+|+..+...
T Consensus 76 ~~~~~C~IC~~~~--~~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELV--YQPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBC--SSEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhh--cCCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 3557899998754 357777775 67999999999986 345899999998765
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.76 E-value=0.0033 Score=59.91 Aligned_cols=53 Identities=19% Similarity=0.442 Sum_probs=41.0
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
-+++..|.||++.. .+|...||. |.+|..|+.+|+..+ ...||+|+.++....
T Consensus 20 ~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 20 FVKSISCQICEHIL--ADPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHHTBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCcHh--cCcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHhh
Confidence 34568899998764 357666764 679999999999875 358999999987643
No 45
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.76 E-value=0.0037 Score=71.92 Aligned_cols=52 Identities=19% Similarity=0.608 Sum_probs=40.8
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1122)
+...|.||++.. .++...||. |.+|..|+.+|+.. ++..||+|+.++....+
T Consensus 331 ~~~~C~ICle~~--~~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAEND--KDVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSB--CCEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCC--CCeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCcee
Confidence 347999998754 457778886 56899999999984 45699999999876544
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.58 E-value=0.0034 Score=59.10 Aligned_cols=51 Identities=16% Similarity=0.443 Sum_probs=39.8
Q ss_pred cccCCcceEecCCCCCCCCccc-ccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
-+++..|.||++... +|... ||. |.+|..|+.+|+..+ ..|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFI--DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHh--CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCcccccc
Confidence 355688999987643 46654 765 679999999999875 6999999998653
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.32 E-value=0.0058 Score=58.59 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=41.1
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1122)
-++.-.|.||++.. .+|...||. |.++..|+.+|++.++. .||+|+..+....+
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLENQL 68 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGGGC
T ss_pred CCCCCCCCcCChhh--cCeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHHhc
Confidence 34557899998754 356666754 67999999999987653 89999998876443
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.26 E-value=0.0021 Score=61.23 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=39.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+++..|.||++.. .+|...||. |.+|..|+.+|+..+ +..|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCN-----HTLCKPCFQSTVEKA-SLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTS-----CEECHHHHCCCCCTT-TSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCC-----CHHhHHHHHHHHhHC-cCCCCCCCcccCc
Confidence 4457899999754 357777765 679999999999753 4699999999864
No 49
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.09 E-value=0.016 Score=50.51 Aligned_cols=54 Identities=24% Similarity=0.512 Sum_probs=38.6
Q ss_pred ccccccCCcceEecCCCCCCCCcccccCCCCcccc-ccHHHHHHHHHccCCCcccccccceee-ccccc
Q 001217 63 EEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF-SPVYA 129 (1122)
Q Consensus 63 ~~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~-~~iy~ 129 (1122)
|...++...|.||++.. .++...||. |. +-..|+.+ ...||+|+.++.- .++|.
T Consensus 9 e~~~~~~~~C~IC~~~~--~~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGT--VNWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCSCCCSSCCSSSSSSC--CCCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCEECCCS
T ss_pred cccCCCCCCCCCcCcCC--CCEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhceEEeec
Confidence 34456678999998753 457888987 34 67789873 3699999998854 34453
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.02 E-value=0.0038 Score=60.01 Aligned_cols=53 Identities=17% Similarity=0.433 Sum_probs=39.4
Q ss_pred ccCCcceEecCCCCC-----CCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 67 EEEEVCRICRNPGDP-----ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~-----~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
+++..|.||++..+. ..+...||. |.+|.+|+.+|++.+ .+||+|+..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCcccc
Confidence 345789999976431 112556765 679999999999865 49999999987654
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.97 E-value=0.0019 Score=57.07 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=36.9
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCcccc-ccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
.+++..|.||++.. .++...||. |. +...|+.+| ..|++|+..+.-
T Consensus 21 ~~~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRN--IAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSB--CCEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCC--CCEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 34568999999753 457778986 56 999999999 699999998864
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.72 E-value=0.0078 Score=50.21 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=36.3
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+++.-.|.||++... +|...||. |.+++.|+.+| +..|++|+.++..
T Consensus 3 e~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCB--CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccC--CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 456678999987653 57778875 56899998873 5689999999875
No 53
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.33 E-value=0.022 Score=61.50 Aligned_cols=52 Identities=17% Similarity=0.574 Sum_probs=40.0
Q ss_pred ccCCcceEecCCCCCCCCcccccC-CCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCA-CSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~-C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
+.-..|.||++--..+ .-|. |. ..+|..|+.+|++++++..||.|+..+...
T Consensus 178 ~~i~~C~iC~~iv~~g----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSC----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCC----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3478999998755433 2243 54 469999999999988888999999998654
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.22 E-value=0.013 Score=50.20 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=37.0
Q ss_pred ccccCCcceEecCCCCCCCCcc--cccCCCCcccc-ccHHHHHHHHHccCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPLR--YPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~--~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
.++....|.||++... ++.+ .||. |. +-.+|..+|.+.+ ..||+|+.++.
T Consensus 3 ~~~~~~~C~IC~~~~~--~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 3 CQNLLKPCSLCEKRPR--DGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp CGGGGSBCTTTSSSBS--CEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CCCcCCCCcccCCcCC--CeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 4566789999997532 3433 4886 44 6789999998764 68999999875
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.87 E-value=0.012 Score=56.54 Aligned_cols=52 Identities=17% Similarity=0.483 Sum_probs=37.6
Q ss_pred ccCCcceEecCCCCC---CCC--cccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDP---ENP--LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~---~~~--L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
++...|.||++..+. .+. ...||. |.+|..|+.+|++.+ .+|++|+..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 456789999875431 111 334543 789999999999875 4999999988654
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.61 E-value=0.024 Score=54.18 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=38.1
Q ss_pred cccCCcceEecCCCCCCCCccc-ccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
-++.-.|.||++.. .+|... ||. |.+++.|+.+|+. ..||+|+..+..
T Consensus 19 l~~~~~C~IC~~~~--~~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 19 LEKLLRCSRCTNIL--REPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HHHTTSCSSSCSCC--SSCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred chhCCCCCCCChHh--hCccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 35678999998765 357666 764 6799999999987 689999999853
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=93.56 E-value=0.047 Score=50.95 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=39.6
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
.++-.|-||++-. .+|...||. | |-+-+.|+.+|+.. +.+||+|+.++...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChh
Confidence 4568999998753 468888854 2 45889999999985 46899999998754
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.34 E-value=0.037 Score=59.71 Aligned_cols=53 Identities=9% Similarity=0.017 Sum_probs=40.7
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
..+.-.|.||++-. .+|.+.||. |-+-+.|+.+|+.+++. +||+|+.++....
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCchhc
Confidence 34567899998754 468888863 56889999999987654 4999999987543
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=93.19 E-value=0.063 Score=50.27 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=40.2
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..++-.|-||++-. .+|...||. +-+-+.|+.+|+.. ..+||+|+.++...
T Consensus 26 ~p~~~~CpI~~~~m--~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLM--TDPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBC--SSEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcc--cCCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCChh
Confidence 34568999998753 468888863 56889999999984 46999999998753
No 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=93.16 E-value=0.059 Score=48.85 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=40.3
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..++-.|-||++-. .+|...||. +-+-+.|+.+|+.. +.+|++|+..+...
T Consensus 11 ~p~~~~CpI~~~~m--~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLM--TDPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred CchheECcccCchh--cCCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCChH
Confidence 34678999998753 468888863 56889999999985 46999999998754
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.14 E-value=0.02 Score=50.42 Aligned_cols=45 Identities=24% Similarity=0.716 Sum_probs=34.4
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCcccc-ccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
++...|.||++.. .++...||. |. +...|+.+ ...||+|+.++.-
T Consensus 23 ~~~~~C~IC~~~~--~~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRN--IAIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSC--CCBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCC--CCEEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 4557899998753 457788985 55 88999853 2699999998864
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=92.69 E-value=0.026 Score=56.12 Aligned_cols=52 Identities=25% Similarity=0.542 Sum_probs=38.8
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
.-+++-.|.||++.. .+|...||. |.+++.|+.+|++.+ ..+|++|+.+..+
T Consensus 27 ~l~~~~~C~IC~~~~--~~pv~~~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVL--RRPFQAQCG-----HRYCSFCLASILSSG-PQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHGGGS-CEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhh--cCcEECCCC-----CccCHHHHHHHHhcC-CCCCCCCCCcccc
Confidence 345667899998754 356666654 679999999999743 4589999997644
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=91.92 E-value=0.062 Score=46.04 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=35.3
Q ss_pred ccCCcceEecCCCCCCCCccc--ccCCCCcccc-ccHHHHHHHHHccCCCccccccccee
Q 001217 67 EEEEVCRICRNPGDPENPLRY--PCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFS 123 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1122)
+++..|.||++.. .++... ||. |. +=.+|+.+|.+.+ ..||+|+.++.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTG-----HLMACFTCAKKLKKRN--KPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEE-----EEEECHHHHHHHHHTT--CCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCC-----ChhhHHHHHHHHHHcC--CcCCCcCcchh
Confidence 4557899999753 345554 876 44 3489999999754 58999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.62 E-value=0.099 Score=54.16 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=40.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..++-.|.||.+-. .+|.+.||. +-+=+.|+.+|+...+. +||+|+.++...
T Consensus 103 ip~~f~CPI~~elm--~DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELM--REPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGG
T ss_pred CcHhhcccCccccC--CCCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChh
Confidence 34568999998754 468888863 56889999999987654 799999998754
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=90.25 E-value=0.09 Score=53.27 Aligned_cols=53 Identities=17% Similarity=0.416 Sum_probs=40.0
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
-++.-.|.||++.. .+|...||. +.+...|+.+|++.++ .+||+|+..+....
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhh--cCcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcchhh
Confidence 45567899998754 356665543 6799999999998764 39999998886543
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.96 E-value=0.25 Score=54.01 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=40.3
Q ss_pred cccCCcceEecCCCCCCCCccc-ccCCCCccccccHHHHHHHHHccCCCcccc--cccceeecc
Q 001217 66 EEEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEV--CKHAFSFSP 126 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~Cel--C~~~f~~~~ 126 (1122)
...+-.|.||.+-. .+|..+ .|. |-+=+.|+.+|+..+++..||+ |++.+....
T Consensus 178 ~~~el~CPIcl~~f--~DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPY--EAPLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBC--SSEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcc--cCCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 34567899998743 345543 433 6688999999998777789999 999887643
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.64 E-value=0.26 Score=45.34 Aligned_cols=51 Identities=16% Similarity=0.457 Sum_probs=38.5
Q ss_pred ccCCcceEecCCCCCCCCcccc-cCCCCccccccHHHHHHHHHcc----CCCcccc--cccc-eee
Q 001217 67 EEEEVCRICRNPGDPENPLRYP-CACSGSIKFVHQDCLLQWLNHS----NARQCEV--CKHA-FSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~P-C~C~Gsi~~vH~~CL~~Wl~~s----~~~~Cel--C~~~-f~~ 124 (1122)
.++-.|-||++.. .+|...| |. |-+-+.|+.+|+... +..+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4557899998754 3588775 64 568899999999864 3569999 9877 543
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=85.95 E-value=0.096 Score=59.52 Aligned_cols=45 Identities=27% Similarity=0.724 Sum_probs=36.1
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCcccc-ccHHHHHHHHHccCCCcccccccceee
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+++..|.||++.. .++...||. |. +...|+.+| ..||+|+..+.-
T Consensus 293 ~~~~~C~IC~~~~--~~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKE--VSVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSB--CCEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcC--CceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 4668999998754 457778987 45 889999988 589999998864
No 69
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.44 E-value=0.32 Score=42.37 Aligned_cols=51 Identities=14% Similarity=0.352 Sum_probs=36.5
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
+.......|.||.+++ .++. |.+.-+.+|..||.-.+.. ++.++|+.|+..
T Consensus 7 ~~~~~~~~C~vC~~~~----~ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 7 QNLAPGARCGVCGDGT----DVLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTCCCTTTSCCT----TCEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred cCCCCCCCcCCCCCCC----eEEE---CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3345567899997542 3432 5666678999999877765 367999999865
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.44 E-value=0.34 Score=44.29 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=36.7
Q ss_pred cCCcceEecCCCCCCCCcc-cccCCCCccccccHHHHHHHHHcc---C---CCcccc--cccceee
Q 001217 68 EEEVCRICRNPGDPENPLR-YPCACSGSIKFVHQDCLLQWLNHS---N---ARQCEV--CKHAFSF 124 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~-~PC~C~Gsi~~vH~~CL~~Wl~~s---~---~~~Cel--C~~~f~~ 124 (1122)
+.-.|.||+++....+... .||. |.+.++|+.+++..+ + ...||. |+..+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~ 64 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEE
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCcc
Confidence 3567999998654322221 3665 679999999999763 2 368999 9998654
No 71
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.75 E-value=0.13 Score=47.21 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=40.6
Q ss_pred ccccCCcceEecCCCC-CCCCcccccCCCCccccccHHHHHHHHH------ccCCCcccccccceeec
Q 001217 65 EEEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLN------HSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~------~s~~~~CelC~~~f~~~ 125 (1122)
..++...|.+|..... .++.++. |.+.-+.+|+.|+.-=+. -.+.+.|..|....+..
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred cCCCCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 4456789999987644 2456654 556667899999865443 24679999998876543
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=83.64 E-value=0.13 Score=45.95 Aligned_cols=51 Identities=25% Similarity=0.574 Sum_probs=36.9
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCcccc-ccHHHHHHHHHccCCCcccccccceeec-cccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSFS-PVYA 129 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~~-~iy~ 129 (1122)
.+++..|.||++.. .++...||. |. +=..|+.+| ..||+|+.++.-. ++|.
T Consensus 15 l~~~~~C~IC~~~~--~~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 15 LKEAMLCMVCCEEE--INSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHHHTBCTTTSSSB--CCEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEEEECBC
T ss_pred CCCCCEeEEeCccc--CcEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCeEEEEe
Confidence 34557999998753 457788987 33 557898876 3999999988654 3453
No 73
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.36 E-value=0.27 Score=45.18 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=36.5
Q ss_pred cccCCcceEecCCC-CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccce
Q 001217 66 EEEEEVCRICRNPG-DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~-~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1122)
.++.+.|.||...+ +.++.++. |.+.-..+|+.|+.-=..-.+.+.|+.|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEE---CSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEE---CCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 45668999998764 23345543 44566679999985323345789999997653
No 74
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=79.02 E-value=0.79 Score=40.40 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=32.9
Q ss_pred cccccCCcceEecCCCCCCCCccc--ccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
.++++...| ||+.... +.++. -|.|+. .++|..|+. +.. +++..|+.|...
T Consensus 11 ~d~~~~~~C-~C~~~~~--g~MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSY--GEMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCTTSCCCS-TTCCCSC--SSEECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred cCCCCCCEE-ECCCCCC--CCEeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344566788 8987543 34543 222432 589999987 443 367999999764
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.97 E-value=0.35 Score=42.65 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=36.1
Q ss_pred cccCCcceEecCCC-CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccc
Q 001217 66 EEEEEVCRICRNPG-DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~-~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~ 121 (1122)
.++.+.|.||...+ +.++.++. |.+.-..+|+.|+.-=..-++.+.|+.|..+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 35568999998765 33455543 4455668999998532233578999999764
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=76.22 E-value=0.99 Score=38.38 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=35.1
Q ss_pred CcceEecCCCCCCCCccc-ccCCCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001217 70 EVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1122)
-.|.||.+-- .+|.+. +|. +-+=+.|+++|++..+ +|++++.+...+.
T Consensus 4 ~~CpIs~~~m--~dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVP--RRPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCC--SSEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCGGG
T ss_pred EEecCCCCCC--CCCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCChhh
Confidence 4688887653 356655 332 5688999999998654 5999999887654
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.71 E-value=0.41 Score=42.26 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=36.5
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1122)
+.++...|.+|....+ ++.++. |.+.-.++|..|+.-=... .+...|+.|..+..
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCC-CCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3455678999987654 334433 5666689999997543322 25789999987653
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.48 E-value=1.2 Score=41.28 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=31.8
Q ss_pred cccCCcceEecCCCCCCCCccc--ccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
+++...| ||+.... +.++. -|.|+. .++|..|+. +.. +++.+|+.|+..
T Consensus 33 ~~e~~yC-iC~~~~~--g~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY--GEMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCC--SCCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCC--CCEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence 4556778 9987543 23432 233542 589999987 443 367999999864
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=67.26 E-value=0.57 Score=49.25 Aligned_cols=52 Identities=27% Similarity=0.573 Sum_probs=36.6
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1122)
+++..+.|.+|..++ .++. |.+.-+.+|..|+.--+.. ++.+.|+.|...-+
T Consensus 3 ~d~~~~~C~~C~~~g----~ll~---Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGG----DLLC---CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCCE----EEEE---CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCC----ceEE---cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 345668899998653 2432 6667788999998665543 46799999987654
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.59 E-value=4.2 Score=36.21 Aligned_cols=55 Identities=18% Similarity=0.395 Sum_probs=35.6
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc---cCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~ 123 (1122)
.+++...| ||....+.++.++. |...-.++|..|+.-=-.. ..+..|+.|.....
T Consensus 8 ~~~~~~~C-~C~~~~d~~~~MIq---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNVNHFMIE---CGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSCEEE---BTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccCCccEE-EcCCccCCCCceEE---cCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34566778 99876654555554 4444579999997421111 25689999997653
No 81
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.96 E-value=0.92 Score=41.89 Aligned_cols=52 Identities=25% Similarity=0.507 Sum_probs=33.6
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1122)
..+...|.||...+++ +.++. |.+.-+.+|..||.-=+. -++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~---CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLF---CDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEE---CTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEE---cCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4556789999876542 33432 445567899999852111 2367899999764
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=57.33 E-value=2.7 Score=35.75 Aligned_cols=49 Identities=16% Similarity=0.511 Sum_probs=34.2
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
+++.+.|.+|... +.++. |.+.-+.+|..|+.-=+.. ++.+.|+.|..+
T Consensus 8 ~~~~~~C~vC~~~----g~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4566899999864 23432 5566678999998754332 467999999754
No 83
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=56.03 E-value=6.8 Score=38.41 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=34.6
Q ss_pred cccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHH------H---ccCCCccccccc
Q 001217 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWL------N---HSNARQCEVCKH 120 (1122)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl------~---~s~~~~CelC~~ 120 (1122)
|++..++.|++|.+++ .|+ -|++.-+-+|.+||..=+ + .++.+.|..|..
T Consensus 52 d~Dg~~~~C~vC~dGG----~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGG----NLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCCS----EEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCCC----eeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3355667899998753 343 245556789999998742 2 357899999953
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=54.23 E-value=6.3 Score=39.29 Aligned_cols=48 Identities=27% Similarity=0.608 Sum_probs=34.5
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH---------ccCCCcccccc
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN---------HSNARQCEVCK 119 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~---------~s~~~~CelC~ 119 (1122)
++..++.|++|.+++ .|+ .|...-+-+|..||..=+. .++.+.|..|.
T Consensus 59 ~Dg~~d~C~vC~~GG----~Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG----NLI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TTSCBCSCSSSCCCS----SEE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCCeecccCCCC----cEE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 355678999998754 343 2345556799999986552 46789999996
No 85
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.45 E-value=2.4 Score=42.98 Aligned_cols=53 Identities=19% Similarity=0.436 Sum_probs=34.7
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH---ccCCCcccccccce
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN---HSNARQCEVCKHAF 122 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~---~s~~~~CelC~~~f 122 (1122)
+++...| +|...+++++.++. |.+.-.++|..|+.-=-. ..+...|+.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~---Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIG---CDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEE---CTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeE---CCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3556789 99876554455544 556668999999842111 24578999998653
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=50.70 E-value=2.2 Score=36.22 Aligned_cols=49 Identities=27% Similarity=0.574 Sum_probs=32.9
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
++++..|.+|...+ .|+. |.+.-+.+|..|+.-=+.. ++.+.|+.|..+
T Consensus 6 d~~~~~C~vC~~~g----~ll~---Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG----ELLC---CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS----SCBC---CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC----CEEE---cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45568899997642 3432 5556667999998643332 367899999754
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.60 E-value=31 Score=31.72 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=35.7
Q ss_pred cccCCcceEecCCC--CCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1122)
+....+|.||-++- +.+..++--|+= .---|=+.|.+-=.+. +++.|+.||.+|+-
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~e--C~FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNE--CGFPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSS--SCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeec--cCChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 34568999997642 234445444431 1123778997754444 56899999999973
No 88
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=49.26 E-value=2.3 Score=50.40 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=32.0
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc---cCCCcccccccce
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAF 122 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f 122 (1122)
.+...| ||....++++.++. |..+-.++|-.|+--=-.. -++..|+.|+...
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIq---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIE---CDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEE---BTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEE---ccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 444556 88765554556655 4445579999997321111 1457999998654
No 89
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.18 E-value=3 Score=35.51 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=35.4
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc---cCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~ 121 (1122)
++++..|.+|....++++.++. |...-.++|..|+.--... ..+..|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWIC---CDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEE---CSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEE---ccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3566889999877654555554 4455689999997432211 246789999765
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=46.27 E-value=3.5 Score=38.92 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=26.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN 108 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~ 108 (1122)
.++++.|.+|.+.++. ++|+. |++--+.+|..||.-...
T Consensus 4 ~~~~~~C~~C~~~g~~-~~ll~---C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL-LDQFF---CTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCT-TTSEE---CSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCC-cCCeE---CCCCCCCcChHHhCCccc
Confidence 3466899999877653 34432 456667899999976553
No 91
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=45.93 E-value=2.7 Score=43.17 Aligned_cols=49 Identities=29% Similarity=0.635 Sum_probs=34.3
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1122)
.++.|.+|..++ .++ .|.+.-+.+|..|+.--+.. ++.+.|+.|+..=+
T Consensus 3 ~~~~C~~C~~~g----~ll---~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGG----ELL---CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCS----SCE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCC----eee---ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 457899998653 242 25666678999998655543 46799999997643
No 92
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.66 E-value=2.2 Score=36.23 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=29.8
Q ss_pred cccCCcceEecCCCCCCCCccc--ccCCCCccccccHHHHHHHHHc--cCCCccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1122)
+++...| ||+.... +.++. -|.|+ ..++|..|+. +.. +++..|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~--g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY--GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC--SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC--CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456777 8987533 34442 23343 1589999987 544 36789999975
No 93
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.66 E-value=8.6 Score=33.19 Aligned_cols=51 Identities=24% Similarity=0.495 Sum_probs=29.8
Q ss_pred cccCCcceEecCCCCCCCCcccccCCC-CccccccHHHHH----H--HHH--ccCCCcccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACS-GSIKFVHQDCLL----Q--WLN--HSNARQCEVCK 119 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~-Gsi~~vH~~CL~----~--Wl~--~s~~~~CelC~ 119 (1122)
+++...|.+|+.+.++++.++. |. +...++|..|.- + =+. .+....|+-|.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~---CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAIL---CEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEE---BTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEe---cccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4556789999988765555543 44 445799999962 1 111 11256788775
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=42.64 E-value=2.4 Score=36.31 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=36.5
Q ss_pred cccCCcceEecCCCC-CCCCcccccCCCCccccccHHHHHHHH-----HccCCCcccccccce
Q 001217 66 EEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWL-----NHSNARQCEVCKHAF 122 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl-----~~s~~~~CelC~~~f 122 (1122)
+++...|.+|....+ .++.++. |.+.-+.+|+.|+.-=+ ..++.+.|+.|...-
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456689999987532 3345543 55666789999986422 245779999997653
No 95
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=41.96 E-value=7.7 Score=33.84 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=35.2
Q ss_pred CCcccccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001217 60 DIEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1122)
Q Consensus 60 ~~~~~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1122)
+.|++++++...| ||....+.++.++. |.....++|..|+--=-. ...+..|+.|+.+
T Consensus 7 ~~e~~~~~~~~~C-~C~~~~~~g~~mI~---Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 7 GMERGVDNWKVDC-KCGTKDDDGERMLA---CDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CCSCSSCSSEECC-TTCCCSCCSSCEEE---CSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cccCCCCCcceEe-eCCCccCCCCcEEE---CCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3444445666788 78776544444554 445568999999642111 1246789999764
No 96
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=41.78 E-value=2.6 Score=38.91 Aligned_cols=49 Identities=31% Similarity=0.626 Sum_probs=31.1
Q ss_pred ccccCCcceEecCCCCCCCCcc--cccCCCCccccccHHHHHHHHHc--cCCCcccc-ccc
Q 001217 65 EEEEEEVCRICRNPGDPENPLR--YPCACSGSIKFVHQDCLLQWLNH--SNARQCEV-CKH 120 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~--~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~Cel-C~~ 120 (1122)
++++...| ||+.... + .++ --|.|.. .++|..|+- |.. +++.+|+. |..
T Consensus 22 ~~~~~~yC-iC~~~~~-g-~MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY-G-PMVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCS-S-SEECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCC-C-CEEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34566788 9986543 2 343 3344552 689999985 332 36799999 974
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.17 E-value=2.8 Score=34.93 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=32.2
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1122)
+++++.|.+|...+ .|+. |.+.-+.+|..|+.-=+.. ++.+.|+.|..
T Consensus 6 ~~~~~~C~vC~~~g----~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG----QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS----CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC----eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45568899998642 3432 5566678999998643322 35788999864
No 98
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.79 E-value=6.4 Score=37.37 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=28.3
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCcccc
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEV 117 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~Cel 117 (1122)
+.++++.|.+|.+. ++|+ -|..++.-+.+|..||. +.. +++++|+-
T Consensus 11 ~~~~~~~C~~C~~~----G~ll-~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~ 58 (107)
T 4gne_A 11 KQMHEDYCFQCGDG----GELV-MCDKKDCPKAYHLLCLN--LTQPPYGKWECPW 58 (107)
T ss_dssp CCSSCSSCTTTCCC----SEEE-ECCSTTCCCEECTGGGT--CSSCCSSCCCCGG
T ss_pred cCCCCCCCCcCCCC----CcEe-EECCCCCCcccccccCc--CCcCCCCCEECCC
Confidence 34566889999843 2343 46522444689999997 543 24455553
No 99
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.21 E-value=7.9 Score=31.33 Aligned_cols=46 Identities=30% Similarity=0.659 Sum_probs=30.3
Q ss_pred cceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCccccccc
Q 001217 71 VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1122)
Q Consensus 71 ~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1122)
.|.+|...++++ .++. |.+.-+.+|..|+.-=+.. ++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 589998765433 4432 4566678999998431222 35789999974
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=36.54 E-value=3.7 Score=35.39 Aligned_cols=49 Identities=33% Similarity=0.715 Sum_probs=33.3
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1122)
+.+++.|.+|...+ .|+. |.+.-+.+|..|+.-=+. -++.+.|+.|...
T Consensus 5 ~~~~~~C~vC~~~g----~ll~---CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGG----ELIC---CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCS----SCEE---CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCC----CEEE---cCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 34568999998642 3432 556667899999864332 2367899999754
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.43 E-value=14 Score=35.05 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=24.0
Q ss_pred ccCCcceEecCCCC-----CCCCcccccCCCCccccccHHHHH
Q 001217 67 EEEEVCRICRNPGD-----PENPLRYPCACSGSIKFVHQDCLL 104 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~-----~~~~L~~PC~C~Gsi~~vH~~CL~ 104 (1122)
+..+.|.+|...++ ..++|+. |++.-+.+|..||.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhc
Confidence 35588999987542 2245654 55566789999995
No 102
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.18 E-value=8.9 Score=36.47 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=22.3
Q ss_pred CcceEecCCCC------CCCCcccccCCCCccccccHHHHHHH
Q 001217 70 EVCRICRNPGD------PENPLRYPCACSGSIKFVHQDCLLQW 106 (1122)
Q Consensus 70 ~~CRIC~~~~~------~~~~L~~PC~C~Gsi~~vH~~CL~~W 106 (1122)
+.|.+|+..+. ..++|+. |++--+..|..||.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~---C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVS---CADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEE---CSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeE---eCCCCCccchhhCCCh
Confidence 67999987542 1235654 4455567999998754
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.03 E-value=9.4 Score=35.44 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=29.4
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH-ccCCCccccccc
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN-HSNARQCEVCKH 120 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~-~s~~~~CelC~~ 120 (1122)
+.-.| ||....+ ++.++. |.+.-.++|..|+.-=.. ..+...|+.|+.
T Consensus 27 d~vrC-iC~~~~~-~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHD-DGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSC-SSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccC-CCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 7865543 345544 566678999999742111 124689999963
No 104
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.43 E-value=9.9 Score=40.64 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=28.9
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cC-CCcccccccc
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SN-ARQCEVCKHA 121 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~-~~~CelC~~~ 121 (1122)
...|.+|....++ +.++ .|.+.-+.+|..||.-=+.. ++ .+.|+.|..+
T Consensus 174 ~c~C~vC~~~~~~-~~lL---~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQL---MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCE---ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCC-CCeE---EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4578888765443 3443 26677778999998632222 35 7899999753
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=32.41 E-value=3.9 Score=34.46 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=33.1
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH--ccCCCcccccccce
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHAF 122 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~f 122 (1122)
..++.|.+|...+ .++. |.+.-+.+|..|+.-=+. -++.+.|+.|..+.
T Consensus 3 ~~~~~C~vC~~~g----~ll~---Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKSG----QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCCS----SCEE---CSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCCC----cEEE---cCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4568899998642 3432 556667899999864332 23678999997653
No 106
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=32.04 E-value=4.4 Score=34.29 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=29.5
Q ss_pred cccCCcceEecCCCCCCCCccc--ccCCCCccccccHHHHHHHHHc--cCCCccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1122)
+++...| ||+.... +.++. -|.|+. .++|..|+. +.. +++..|+.|+.
T Consensus 6 ~~e~~yC-~C~~~~~--g~mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY--GEMIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC--SEEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC--CCeeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 3455677 8986532 34543 233442 589999987 443 36789999975
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=32.02 E-value=9.8 Score=34.94 Aligned_cols=52 Identities=27% Similarity=0.654 Sum_probs=35.7
Q ss_pred ccccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001217 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1122)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1122)
.+++.+.|.+|..++ .|+. |.+.-+.+|..||.-=+.. ++.+.|+.|...-.
T Consensus 21 ~d~n~~~C~vC~~~g----~LL~---CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 21 LDDSATICRVCQKPG----DLVM---CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSSCCSSSCSSS----CCEE---CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cCCCCCcCcCcCCCC----CEEE---CCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 345668999998653 3432 6677788999998443322 36789999986533
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.17 E-value=8.5 Score=36.46 Aligned_cols=49 Identities=20% Similarity=0.593 Sum_probs=31.3
Q ss_pred CcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
..|.+|...++.++.++. |.+.-+.+|..||.-=+.. ++.+.|+.|+.+
T Consensus 62 ~~C~vC~~~~~~~~~ll~---Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLF---CDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp CCBTTTCCCCCTTCCCEE---CTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred CccccccCcCCCccceEE---cCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 367788765444445543 4445568999998543433 357899999853
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.66 E-value=33 Score=30.00 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=31.7
Q ss_pred ccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH-------ccCCCcccccccce
Q 001217 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN-------HSNARQCEVCKHAF 122 (1122)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~-------~s~~~~CelC~~~f 122 (1122)
++...| ||....+ ++.++. |.+.-.++|..|+.-=.. ...+..|+.|..+.
T Consensus 14 ~~~~~C-~C~~~~~-~~~MI~---Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHN-NRFMIC---CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCC-SSCEEE---CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccC-CCCEEE---eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345677 8877654 334544 445557999999731111 23578999998654
No 110
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=29.29 E-value=60 Score=30.18 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=34.3
Q ss_pred cCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001217 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1122)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1122)
..-.|..|.-+. .-|+. |.. ||.=..||..-++.| ..|++|+++...+
T Consensus 27 G~~nCKsCWf~~---k~LV~---C~d--HYLCl~CLtlmL~~S--drCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN---KGLVE---CNN--HYLCLNCLTLLLSVS--NRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC---SSEEE---CSS--CEEEHHHHHHTCSSS--SEETTTTEECCCC
T ss_pred CcccChhhcccc---CCeee---ecc--hhhHHHHHHHHHhhc--cCCcccCCcCCcc
Confidence 346798888653 23543 443 788889988777665 5999999988654
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=29.20 E-value=9.4 Score=39.54 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=33.3
Q ss_pred CCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH--ccCCCccccccccee
Q 001217 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHAFS 123 (1122)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~f~ 123 (1122)
++.|.+|..++ .++. |.+.-+.+|..|+.-=+. -++.+.|+.|...-.
T Consensus 2 ~~~C~~C~~~g----~ll~---Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKPG----DLVM---CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCCS----SCCC---CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCcCccCCCCC----ceeE---CCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 57899998653 2322 677778899999743222 246789999987643
No 112
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=25.99 E-value=53 Score=37.53 Aligned_cols=43 Identities=23% Similarity=0.541 Sum_probs=30.3
Q ss_pred CCCcccccCCCCccccccHHH--HHHHHH---ccCCCcccccccceeeccc
Q 001217 82 ENPLRYPCACSGSIKFVHQDC--LLQWLN---HSNARQCEVCKHAFSFSPV 127 (1122)
Q Consensus 82 ~~~L~~PC~C~Gsi~~vH~~C--L~~Wl~---~s~~~~CelC~~~f~~~~i 127 (1122)
..++..||+... .-|-.| ++.|+. .++++.||+|+....+..+
T Consensus 256 ~~ri~~PvRg~~---C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 256 YTRMKYPSKSIN---CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SSBCSSEEEETT---CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred cccccccCcCCc---CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 446788988654 467777 344554 4578999999998876543
No 113
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.65 E-value=63 Score=29.50 Aligned_cols=54 Identities=20% Similarity=0.526 Sum_probs=34.5
Q ss_pred cccCCcceEecCCCCCCCCcccccCCCCccccccHHHHHHHHH--------------ccCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--------------HSNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--------------~s~~~~CelC~~~f~~ 124 (1122)
....+.|-||.. .+.+ -..||+= .-+.+|..||.+==. ....+.|.-|+.-...
T Consensus 12 ~~~D~~C~VC~~-~t~~--~l~pCRv--C~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lL 79 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAE--SLFPCRV--CTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLL 79 (89)
T ss_dssp CCCSCCCTTTCC-CCSS--CCSSCSS--SSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSS
T ss_pred CCCCcccCcccc-cccc--ceecccc--ccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhh
Confidence 345689999953 2322 3468762 236799999988511 1135899999866554
No 114
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.76 E-value=11 Score=32.88 Aligned_cols=52 Identities=21% Similarity=0.469 Sum_probs=32.0
Q ss_pred cccCCcceEecCCCCCCCCcc--cccCCCCccccccHHHHHHHHHc--cCCCcccccccceee
Q 001217 66 EEEEEVCRICRNPGDPENPLR--YPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFSF 124 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~--~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~~ 124 (1122)
+++...| ||+.... +.++ --|.|+ ..++|.+|+- +.. .++.+|+.|...-.-
T Consensus 3 ~~~~~yC-~C~~~~~--g~MI~CD~cdC~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY--GEMVGCDNQDCP--IEWFHYGCVG--LTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CSCCCCS-TTSCCCC--SSEECCSCTTCS--CCCEEHHHHT--CSSCCSSCCCCHHHHHHHHH
T ss_pred CCCCeEE-EcCCCCC--CCEeEeCCCCCC--ccCCcccccc--cCcCCCCCEECCCCCccccc
Confidence 3455677 4876532 2444 234453 3689999986 332 357899999876543
No 115
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.37 E-value=4.7 Score=34.51 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=30.0
Q ss_pred cccCCcceEecCCCCCCCCccc--ccCCCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001217 66 EEEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1122)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1122)
+++...| +|+.... +.++. -|.|+ +.++|-.|+. +.. +++..|+.|..+
T Consensus 8 ~~e~~yC-~C~~~~~--g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSY--GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp --CCEET-TTTEECC--SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCCCcEE-ECCCCCC--CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCcccC
Confidence 4555777 8987532 24442 23354 2689999986 433 367899999753
Done!