Query 001219
Match_columns 1121
No_of_seqs 260 out of 778
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 100.0 6E-169 2E-173 1561.7 71.1 749 364-1121 1-770 (770)
2 3eh2_A Protein transport prote 100.0 3E-167 1E-171 1545.7 72.8 738 376-1121 16-766 (766)
3 3eh1_A Protein transport prote 100.0 7E-161 2E-165 1485.0 69.3 706 399-1118 34-751 (751)
4 1m2v_B SEC24, protein transpor 100.0 7E-158 2E-162 1478.1 62.3 718 391-1118 165-926 (926)
5 1pcx_A Protein transport prote 100.0 2E-157 8E-162 1466.0 67.0 718 391-1118 49-810 (810)
6 1m2o_A SEC23, protein transpor 100.0 1E-131 3E-136 1231.9 57.7 667 402-1118 6-765 (768)
7 2nut_A Protein transport prote 100.0 9E-131 3E-135 1222.2 51.4 675 393-1117 6-765 (769)
8 2yrc_A Protein transport prote 99.5 1.9E-14 6.4E-19 122.4 3.2 44 453-496 6-51 (59)
9 4fx5_A VON willebrand factor t 99.2 1.2E-08 4.2E-13 120.7 34.2 305 533-902 77-408 (464)
10 3ibs_A Conserved hypothetical 98.7 2E-07 6.8E-12 97.9 16.4 172 532-770 10-212 (218)
11 3n2n_F Anthrax toxin receptor 98.3 8.4E-06 2.9E-10 83.1 16.4 154 534-753 8-168 (185)
12 1shu_X Anthrax toxin receptor 98.3 1.3E-05 4.4E-10 81.5 17.7 154 533-752 6-164 (182)
13 1ijb_A VON willebrand factor; 98.3 1.3E-05 4.5E-10 83.7 16.0 173 533-770 13-194 (202)
14 4b4t_W RPN10, 26S proteasome r 98.2 3E-06 1E-10 93.2 11.0 148 535-746 5-163 (268)
15 2b2x_A Integrin alpha-1; compu 98.2 8.9E-06 3E-10 86.2 13.9 171 533-771 22-211 (223)
16 1atz_A VON willebrand factor; 98.2 1.1E-05 3.9E-10 83.0 14.3 157 533-755 5-171 (189)
17 4hqf_A Thrombospondin-related 98.2 1.5E-05 5.1E-10 87.7 15.7 165 533-756 21-197 (281)
18 1q0p_A Complement factor B; VO 98.2 5.7E-06 1.9E-10 86.8 11.6 172 532-754 14-205 (223)
19 1v7p_C Integrin alpha-2; snake 98.2 2.7E-05 9.2E-10 81.0 15.9 172 533-771 6-195 (200)
20 4hqo_A Sporozoite surface prot 98.2 1.1E-05 3.8E-10 88.3 13.3 164 533-754 18-192 (266)
21 1pt6_A Integrin alpha-1; cell 98.1 2.2E-05 7.6E-10 82.5 14.1 173 533-773 7-198 (213)
22 2odp_A Complement C2; C3/C5 co 98.1 3.4E-05 1.2E-09 91.6 16.5 180 532-770 8-209 (509)
23 1mf7_A Integrin alpha M; cell 98.1 1.3E-05 4.5E-10 82.7 11.2 174 533-772 5-190 (194)
24 1n3y_A Integrin alpha-X; alpha 98.1 1.9E-05 6.6E-10 81.4 12.4 173 532-771 8-193 (198)
25 2x31_A Magnesium-chelatase 60 98.1 1.3E-07 4.6E-12 97.3 -4.6 177 532-771 4-187 (189)
26 1rrk_A Complement factor B; BB 98.0 6.6E-05 2.3E-09 88.7 15.6 187 534-771 2-202 (497)
27 2x5n_A SPRPN10, 26S proteasome 97.9 3.5E-05 1.2E-09 80.7 11.3 145 535-744 4-159 (192)
28 1mjn_A Integrin alpha-L; rossm 97.8 0.00023 7.9E-09 72.8 14.9 163 534-769 3-177 (179)
29 3hrz_D Complement factor B; se 97.7 2.4E-05 8.2E-10 97.2 6.8 178 532-754 242-433 (741)
30 1jey_B KU80; double-strand DNA 97.7 5.4E-05 1.8E-09 91.8 8.8 147 534-729 8-169 (565)
31 3zqk_A VON willebrand factor; 97.5 0.00048 1.6E-08 71.7 12.3 151 532-755 20-180 (199)
32 1kcq_A Gelsolin, brevin, ADF, 97.5 0.00043 1.5E-08 65.4 10.6 87 975-1093 3-90 (104)
33 2xgg_A Microneme protein 2; A/ 97.5 0.00081 2.8E-08 68.6 13.2 143 533-737 17-168 (178)
34 3k6s_A Integrin alpha-X; cell 97.2 0.0003 1E-08 91.4 7.1 159 534-756 131-302 (1095)
35 1svq_A Severin; actin-binding; 97.2 0.00091 3.1E-08 64.3 8.7 89 974-1093 12-101 (114)
36 3fg7_A Villin-1; actin binding 97.1 0.0012 4E-08 76.7 9.8 107 972-1108 280-392 (398)
37 1jey_A KU70; double-strand DNA 96.8 0.037 1.3E-06 67.6 19.7 155 535-730 37-208 (609)
38 2fh1_A Gelsolin; calcium, cont 96.6 0.0045 1.5E-07 70.4 9.4 113 972-1111 226-341 (344)
39 2ww8_A RRGA, cell WALL surface 96.3 0.0079 2.7E-07 76.4 9.5 146 531-676 222-394 (893)
40 3fg6_A Adseverin, scinderin; C 96.3 0.0049 1.7E-07 70.9 6.9 95 973-1093 268-363 (371)
41 3t3p_B Integrin beta-3; integr 96.2 0.39 1.3E-05 56.5 22.9 270 533-824 111-402 (472)
42 1j72_A Macrophage capping prot 96.1 0.015 5.1E-07 66.1 10.0 84 973-1084 246-335 (347)
43 3fcs_B Integrin beta-3; beta p 96.0 0.2 6.8E-06 61.9 19.7 263 533-824 111-402 (690)
44 3vi3_B Integrin beta-1; beta p 95.8 0.74 2.5E-05 53.9 22.2 271 533-824 122-411 (454)
45 1d0n_A Horse plasma gelsolin; 95.6 0.023 7.8E-07 70.9 9.2 96 972-1093 611-707 (729)
46 3v4v_B Integrin beta-7; cell a 95.5 0.45 1.5E-05 56.3 19.3 271 533-824 132-425 (503)
47 3k6s_B Integrin beta-2; cell r 95.0 0.065 2.2E-06 66.1 10.7 205 533-753 104-325 (687)
48 3rag_A Uncharacterized protein 94.7 0.051 1.7E-06 58.7 7.6 94 532-659 133-227 (242)
49 1j72_A Macrophage capping prot 94.2 0.13 4.5E-06 58.3 9.9 88 974-1093 135-223 (347)
50 1d0n_A Horse plasma gelsolin; 93.1 0.24 8.3E-06 61.7 10.4 90 973-1094 132-222 (729)
51 1yvr_A RO autoantigen, 60-kDa 92.0 0.19 6.4E-06 60.4 7.2 106 530-674 365-474 (538)
52 3fg6_A Adseverin, scinderin; C 91.3 0.48 1.6E-05 54.3 9.2 52 974-1028 165-217 (371)
53 2fh1_A Gelsolin; calcium, cont 91.3 0.32 1.1E-05 55.1 7.6 53 974-1029 124-176 (344)
54 2iue_A Pactolus I-domain; memb 88.5 1.7 5.7E-05 46.1 9.9 114 535-680 5-125 (212)
55 3fg7_A Villin-1; actin binding 78.9 0.4 1.4E-05 55.5 0.0 52 974-1028 178-229 (398)
56 2a20_A Regulating synaptic mem 61.7 1.6 5.4E-05 36.8 -0.1 28 455-486 32-59 (62)
57 2j9u_B VPS36, vacuolar protein 61.6 1.8 6.3E-05 38.2 0.2 19 477-495 16-34 (76)
58 2nvo_A RO sixty-related protei 59.5 13 0.00045 44.4 7.3 104 530-674 359-470 (535)
59 1gh9_A 8.3 kDa protein (gene M 42.5 7.6 0.00026 34.1 1.0 30 456-491 4-33 (71)
60 2gmg_A Hypothetical protein PF 41.2 7.4 0.00025 36.6 0.8 36 455-495 66-101 (105)
61 1pft_A TFIIB, PFTFIIBN; N-term 39.2 37 0.0013 27.1 4.6 29 456-487 5-33 (50)
62 3rag_A Uncharacterized protein 36.6 28 0.00094 37.5 4.4 45 709-753 28-76 (242)
63 4gat_A Nitrogen regulatory pro 34.2 13 0.00044 32.2 1.1 32 454-486 7-38 (66)
64 2zet_C Melanophilin; complex, 29.9 10 0.00035 38.1 -0.2 34 456-489 85-119 (153)
65 1vq8_Z 50S ribosomal protein L 29.3 34 0.0011 30.9 3.1 29 456-488 27-55 (83)
66 2csz_A Synaptotagmin-like prot 28.6 19 0.00066 31.9 1.3 31 457-487 43-73 (76)
67 2vut_I AREA, nitrogen regulato 28.6 14 0.00047 29.3 0.3 30 456-486 1-30 (43)
68 1zbd_B Rabphilin-3A; G protein 27.5 22 0.00076 34.8 1.7 42 457-498 73-122 (134)
69 1b3t_A Protein (nuclear protei 27.0 65 0.0022 31.1 4.6 31 553-583 113-144 (147)
70 6rxn_A Rubredoxin; electron tr 26.3 27 0.00093 28.0 1.7 8 479-486 31-38 (46)
71 1x0t_A Ribonuclease P protein 25.6 22 0.00075 34.1 1.3 35 457-491 66-107 (120)
72 4hg1_A Putative cytoplasmic pr 25.3 1.1E+02 0.0036 31.2 6.1 106 922-1035 48-175 (225)
73 2avu_E Flagellar transcription 24.9 14 0.00047 38.5 -0.3 31 452-485 130-161 (192)
74 1e8j_A Rubredoxin; iron-sulfur 24.4 40 0.0014 27.7 2.4 10 478-487 3-12 (52)
75 2kn9_A Rubredoxin; metalloprot 23.6 14 0.00046 33.3 -0.6 9 478-486 60-68 (81)
76 1yuz_A Nigerythrin; rubrythrin 21.8 26 0.00088 36.6 1.0 25 456-487 171-195 (202)
77 1dx8_A Rubredoxin; electron tr 21.7 36 0.0012 29.7 1.7 9 478-486 40-48 (70)
78 1s24_A Rubredoxin 2; electron 20.9 17 0.00059 33.1 -0.5 32 455-486 34-76 (87)
79 2apo_B Ribosome biogenesis pro 20.6 37 0.0013 28.8 1.5 36 455-500 5-41 (60)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=6.3e-169 Score=1561.66 Aligned_cols=749 Identities=35% Similarity=0.677 Sum_probs=714.3
Q ss_pred CCCCCCccCCc-------cccccCCCCCCCCCCCCCCceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccC
Q 001219 364 QIPRPVPSSTV-------VLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPL 436 (1121)
Q Consensus 364 ~iP~P~~~~~~-------~~~~t~~~~~~~~PP~~~t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pf 436 (1121)
|||+|+++.+. ..|.|...+ ..||+++++|++.|+|||+|+|||+|||+||.|++++++++||||++|+||
T Consensus 1 ~~ps~~~~~~~~~~~~~~~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl 78 (770)
T 3efo_B 1 AMGSPIQVIENDRASRGGQVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPF 78 (770)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTT
T ss_pred CCCchHHHHHHHHHhcCCCCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcC
Confidence 69999877333 357775433 479999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCc
Q 001219 437 ALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRG 516 (1121)
Q Consensus 437 a~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~g 516 (1121)
+++.++|.++|+||+++.+|+||+||||||||||+|+++|++|+||||+..|++|.+|++++|++|+|.|.++||||++|
T Consensus 79 ~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~ 158 (770)
T 3efo_B 79 ATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLG 158 (770)
T ss_dssp CCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCS
T ss_pred CCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccC
Confidence 99888778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccc--cCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-----CCceEEEEEeCCEEEEEecC
Q 001219 517 TVEFVATKEYM--VRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLK 589 (1121)
Q Consensus 517 tVEyvap~eY~--~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-----~rt~VGiITFDs~Vhfynl~ 589 (1121)
+|||++|+||+ .|+++||+|+||||||.+++++|+++++|++|+++|+.||++ +|++|||||||++||||||+
T Consensus 159 tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~ 238 (770)
T 3efo_B 159 SYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK 238 (770)
T ss_dssp EEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC
T ss_pred ceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC
Confidence 99999999999 589999999999999999999999999999999999999964 36899999999999999999
Q ss_pred CCCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh--cCCeEEEE
Q 001219 590 RALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVF 667 (1121)
Q Consensus 590 ~~~~~pqmlVvsDldd~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~--~GGkIivF 667 (1121)
..+++++|+||+|++|+|+|++++|||+++||++.|+++|++|+.+|.+++..++|+|+||++|+.+|+. .||||++|
T Consensus 239 ~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F 318 (770)
T 3efo_B 239 SNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIF 318 (770)
T ss_dssp TTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CcccCceEEEecccccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999998888999999999999999985 79999999
Q ss_pred ecCCCC-cCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccce
Q 001219 668 QSVLPS-VGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG 746 (1121)
Q Consensus 668 ~sg~Pt-~GpG~L~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG 746 (1121)
++|+|+ .|||+|+.|++++ .++++||+++++++++||++||++|+++||+||||+++.+|+|+++|+.|+++|||
T Consensus 319 ~s~lP~t~GpG~l~~r~~~~----~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG 394 (770)
T 3efo_B 319 HSSLPTAEAPGKLKNRDDKK----LVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGG 394 (770)
T ss_dssp ECSCCCSSSTTCCCCCCCCC----CSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTC
T ss_pred ecCCCCcCCCcccccccccc----ccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCc
Confidence 999888 8999999999866 67889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCchhHHHHHHHHhccCCccccceEEEEeCCCcEEEeeeCccccCCCCceeecCCCCCCeEEEEEEecCC
Q 001219 747 QVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDK 826 (1121)
Q Consensus 747 ~v~~y~~F~~~~d~~~L~~dL~r~ltr~~g~~a~mrVR~S~GL~V~~~~G~f~~r~~~~~~lp~id~dtSia~el~~d~~ 826 (1121)
.+++|++|+.+.|.++|.+||+|.+++++||+|+||||||+||+|+++||||+.+++++|+++++|+|++|+|+|+|+++
T Consensus 395 ~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~ 474 (770)
T 3efo_B 395 TLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDK 474 (770)
T ss_dssp CEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSC
T ss_pred eEEEecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEecCCcEEEEEEcccccCCCCHHHHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001219 827 LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNA 906 (1121)
Q Consensus 827 L~~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpVts~l~~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~lv~i 906 (1121)
+.+...+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++
T Consensus 475 l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~ 554 (770)
T 3efo_B 475 LSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHM 554 (770)
T ss_dssp CBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 98777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCcccchhhhchHHHHHHHHhhccCCC--CCCCchHHHHHHHHHcCCChhhhhhcccceeEEeecCC
Q 001219 907 LVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR--TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLD 984 (1121)
Q Consensus 907 L~~Yrk~~a~~~s~gqLiLPesLklLPlyil~LlKS~~L~--~~~s~DeR~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~ 984 (1121)
|.+|||+|+..++++||+|||+||+||+|+++|+||.+|+ .++++|||++++++++++++.+++.||||+||++|++.
T Consensus 555 l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~ 634 (770)
T 3efo_B 555 LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLD 634 (770)
T ss_dssp HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCC
T ss_pred HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHHHHHHHHHCCCHHHHHHhhccceEEEeccc
Confidence 9999999988777899999999999999999999999999 58999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCC-cccccCCCCcHhHHHHHHHH
Q 001219 985 KGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVV 1063 (1121)
Q Consensus 985 ~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~-~~~~lp~~dn~ls~~l~~iI 1063 (1121)
.+ ...+|++++||.++|+++||||||+|+++|||+|++++++++++|||++++++++ ....||++||+++++||+||
T Consensus 635 ~~--~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii 712 (770)
T 3efo_B 635 VK--STMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIM 712 (770)
T ss_dssp SS--SCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHH
T ss_pred cc--cccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCCCCCCHHHHHHHHHH
Confidence 43 2347899999999999999999999999999999999999999999999999998 56789999999999999999
Q ss_pred HHHHHccCCcceEEEEecCCCcHHHHHhhcccCCCC-CCCCCHHHHHHHHHHHHHhhhC
Q 001219 1064 NEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIP-TGGQSYVEFLINIHRQIQLKMS 1121 (1121)
Q Consensus 1064 ~~lr~~r~~y~~l~ivrqg~~~e~~f~~~LVED~~~-~~~~SY~dFL~~lHk~I~~~l~ 1121 (1121)
++||++|..|++|+|||||++.|.+|.++||||| + ++++||+||||+|||+|+++|+
T Consensus 713 ~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~-~~~~~~SY~dfL~~lh~~i~~~l~ 770 (770)
T 3efo_B 713 GIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDK-GLYGGSSYVDFLCCVHKEICQLLN 770 (770)
T ss_dssp HHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSC-C---CCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCccEEEEeCCCChHHHHHHhCcccC-CCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 7 7899999999999999999985
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-167 Score=1545.68 Aligned_cols=738 Identities=39% Similarity=0.729 Sum_probs=700.6
Q ss_pred ccccCCCCCCCCCCCCCCceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCcccccCCCCC
Q 001219 376 LYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMG 455 (1121)
Q Consensus 376 ~~~t~~~~~~~~PP~~~t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pfa~~~~~e~pvPvvd~g~~~ 455 (1121)
.|.|...+ ..||+++|+|++.|+|||+|+|||+|||+||.|++++++++||||++|+||++..+.|+++|+||+++.+
T Consensus 16 ~f~t~~~~--~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~ 93 (766)
T 3eh2_A 16 PFVTGVRG--QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESG 93 (766)
T ss_dssp EEETTSTT--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGC
T ss_pred CcccCCCC--CCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCC
Confidence 46665433 4799999999999999999999999999999999999999999999999999988888889999998899
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEecccccc--CCCCC
Q 001219 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMV--RDPMP 533 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEyvap~eY~~--r~p~p 533 (1121)
|+||+||||||||||+|+++|++|+||||++.|++|.+|++++|++|+|.|.++||||++|+|||++|+||+. |+++|
T Consensus 94 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~p 173 (766)
T 3eh2_A 94 PLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSP 173 (766)
T ss_dssp CCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCC
T ss_pred CCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 89999
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-----CCceEEEEEeCCEEEEEecCCCCCCceEeecCCcccccc
Q 001219 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1121)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-----~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fv 608 (1121)
|+|+||||||.+++++|+++++|++|+++|+.||++ ++++|||||||++||||||+.++.+++|+|++|++|+|+
T Consensus 174 p~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f~ 253 (766)
T 3eh2_A 174 PAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFV 253 (766)
T ss_dssp CEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCC
T ss_pred CEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhhhcc
Confidence 999999999999999999999999999999999975 468999999999999999999888999999999999999
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh--cCCeEEEEecCCCC-cCcccccccccc
Q 001219 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVFQSVLPS-VGIGALSAREAE 685 (1121)
Q Consensus 609 Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~--~GGkIivF~sg~Pt-~GpG~L~~re~~ 685 (1121)
|++++|||+++||++.|+++|++|+.+|.+++..++|+|+||++|+.+|+. .||||++|++|+|+ .|||+|+.|+++
T Consensus 254 P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~ 333 (766)
T 3eh2_A 254 PLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDR 333 (766)
T ss_dssp CCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCCG
T ss_pred ccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCccccccccc
Confidence 999999999999999999999999999998888999999999999999985 69999999999888 799999999886
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCCchhHHHH
Q 001219 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYN 765 (1121)
Q Consensus 686 ~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~d~~~L~~ 765 (1121)
+ .++++||+++++++++||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+.+.|.++|.+
T Consensus 334 ~----~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~ 409 (766)
T 3eh2_A 334 K----LINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLS 409 (766)
T ss_dssp G----GTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred c----cCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHH
Confidence 6 677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCccccceEEEEeCCCcEEEeeeCccccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecC
Q 001219 766 DLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVY 845 (1121)
Q Consensus 766 dL~r~ltr~~g~~a~mrVR~S~GL~V~~~~G~f~~r~~~~~~lp~id~dtSia~el~~d~~L~~~~~~~~Q~AlLYT~~~ 845 (1121)
||+|.+++++||+|+||||||+||+|+++||||+.+++++|+++++|+|++|+|+|+|++++.++..+|||+|++||+.+
T Consensus 410 dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~ 489 (766)
T 3eh2_A 410 DLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCA 489 (766)
T ss_dssp HHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTT
T ss_pred HHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999878899999999999999
Q ss_pred CcEEEEEEcccccCCCCHHHHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 001219 846 GQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLIL 925 (1121)
Q Consensus 846 GeRrIRV~Tl~lpVts~l~~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~lv~iL~~Yrk~~a~~~s~gqLiL 925 (1121)
|+|||||||++++|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++|++|||+|+..++.+||+|
T Consensus 490 G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~l 569 (766)
T 3eh2_A 490 GQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLIL 569 (766)
T ss_dssp SCEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCCC
T ss_pred CCEEEEEEEEeeEecCCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777899999
Q ss_pred hhhhchHHHHHHHHhhccCCC--CCCCchHHHHHHHHHcCCChhhhhhcccceeEEeecCCCCCCCCCCCCccccccccc
Q 001219 926 PEALKLLPLYTLALIKSTGLR--TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHV 1003 (1121)
Q Consensus 926 PesLklLPlyil~LlKS~~L~--~~~s~DeR~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~~~d~~~~lP~~l~LS~e~L 1003 (1121)
||+||+||+|+++|+||.+|+ .++++|||++++++++++++.+++.||||+||++|++..+ ...+|++++||.++|
T Consensus 570 p~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~--~~~~P~~v~ls~~~l 647 (766)
T 3eh2_A 570 PECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVE--STTEPPAVRASEERL 647 (766)
T ss_dssp CGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCS--CC--CCCBCSSGGGC
T ss_pred CHHHHHHHHHHHHHHccHhhcCCCCCCccHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCcc--cccCCCCcCCcHHHc
Confidence 999999999999999999999 4899999999999999999999999999999999998543 235789999999999
Q ss_pred cCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCC-cccccCCCCcHhHHHHHHHHHHHHHccCCcceEEEEecC
Q 001219 1004 SDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKG 1082 (1121)
Q Consensus 1004 ~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~-~~~~lp~~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg 1082 (1121)
+++||||||+|+++|||+|+++++++++||||++++.+++ ....||++||+++++||+||++||++|..|++++|||||
T Consensus 648 ~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~ 727 (766)
T 3eh2_A 648 SNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQE 727 (766)
T ss_dssp CTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred CCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999998 567899999999999999999999999999999999999
Q ss_pred CCcHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhhhC
Q 001219 1083 DPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS 1121 (1121)
Q Consensus 1083 ~~~e~~f~~~LVED~~~~~~~SY~dFL~~lHk~I~~~l~ 1121 (1121)
++.|.+|.++|||||..++.+||+||||+|||+|++||+
T Consensus 728 ~~~~~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~l~ 766 (766)
T 3eh2_A 728 DKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 766 (766)
T ss_dssp SSTHHHHHTTCTTSCCTTTCCCHHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999334589999999999999999985
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=6.6e-161 Score=1485.03 Aligned_cols=706 Identities=35% Similarity=0.641 Sum_probs=661.8
Q ss_pred CCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCcccccCCCCCCcccCCCCceecCceEEEecCCe
Q 001219 399 DMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRR 478 (1121)
Q Consensus 399 D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~g~~ 478 (1121)
++|||+|+|||+|||+||.|++++++++||||++|+||++.. ++|+|++ .+|+||+||||||||||+|.+ +++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~--~~p~RC~rCrayiNPf~~f~~-~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITS--NTIVRCRSCRTYINPFVSFID-QRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECC--SCCCBCTTTCCBCCTTCEESS-SSE
T ss_pred cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCC--CCCCcccCccCEeCCceEEec-CCE
Confidence 489999999999999999999999999999999999999753 3898874 579999999999999999965 689
Q ss_pred EEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHH
Q 001219 479 FICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSA 558 (1121)
Q Consensus 479 W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEyvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~a 558 (1121)
|+||||+..|++|.+|+++. .+++|.|.++||||++|||||++|+||+.|+++||+||||||||.+++++|+++++|++
T Consensus 107 w~Cn~C~~~N~~P~~y~~~~-~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEFMYNP-LTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp EECTTTCCEEECCGGGC----------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred EEcccccCCCCCCHHHhccc-ccccccCcccCchhccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHH
Confidence 99999999999999997542 23556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccC
Q 001219 559 ISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQN 638 (1121)
Q Consensus 559 I~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~ 638 (1121)
|+++|+.||++.|++|||||||++||||||+.++.+++|+|++|++|+|+|++++|||+++||++.|+++||+|+++|.+
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred HHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence 99999999999889999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCeEEEEecCCCCcCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhc
Q 001219 639 NRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEY 718 (1121)
Q Consensus 639 ~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~ 718 (1121)
++++++|+|+||++|..+|+..||||++|++|+||+|+|+|+.|++.+ ..+++||+++++++++||++||++|+++
T Consensus 266 ~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~~----~~~~~ke~~~~~~a~~fY~~la~~~~~~ 341 (751)
T 3eh1_A 266 TRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPN----QRSSTKVVQHLGPATDFYKKLALDCSGQ 341 (751)
T ss_dssp CSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCSC----GGGGSSSCTTCSCSCSHHHHHHHHHHHT
T ss_pred CCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCccccccccc----cCCCchhhhhhcchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998765 3456778889999999999999999999
Q ss_pred CeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCCc---hhHHHHHHHHhccCCccccceEEEEeCCCcEEEeee
Q 001219 719 QVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSD---PAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYH 795 (1121)
Q Consensus 719 gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~d---~~~L~~dL~r~ltr~~g~~a~mrVR~S~GL~V~~~~ 795 (1121)
||+||||+++.+|+|+++|+.|++.|||.+++|++|+.+.| .++|.+||+|++++++||+|+||||||+||+|+++|
T Consensus 342 ~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~ 421 (751)
T 3eh1_A 342 QTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFH 421 (751)
T ss_dssp TEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEE
T ss_pred CceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccceEEEEEecCCeEEEEee
Confidence 99999999999999999999999999999999999997654 579999999999999999999999999999999999
Q ss_pred CccccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecCCcEEEEEEcccccCCCCHHHHHhccChhHH
Q 001219 796 GNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQ 875 (1121)
Q Consensus 796 G~f~~r~~~~~~lp~id~dtSia~el~~d~~L~~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpVts~l~~vf~~~D~dai 875 (1121)
|||+.+++++|+++++|+|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++|++++.++|+++|+||+
T Consensus 422 G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~ 501 (751)
T 3eh1_A 422 GNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAA 501 (751)
T ss_dssp SSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHH
T ss_pred CCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCCCCEEEEEEEecccccCCHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccchhhhchHHHHHHHHhhccCCC--CCCCchH
Q 001219 876 FTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR--TDGRIDD 953 (1121)
Q Consensus 876 ~~~laK~a~~~~~~~~l~d~R~~L~~~lv~iL~~Yrk~~a~~~s~gqLiLPesLklLPlyil~LlKS~~L~--~~~s~De 953 (1121)
+++|+|+|+++++++++.|+|+||+++|+++|++||++|+.. +.+||+|||+||+||+|+++|+||.+|+ .++++||
T Consensus 502 ~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~-~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~De 580 (751)
T 3eh1_A 502 ICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNL-QHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDD 580 (751)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC------CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccC-CCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhH
Confidence 999999999999999999999999999999999999999754 4679999999999999999999999999 5799999
Q ss_pred HHHHHHHHcCCChhhhhhcccceeEEeecCCCC-----CC-CCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCH
Q 001219 954 RSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG-----ED-GSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDS 1027 (1121)
Q Consensus 954 R~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~~~-----d~-~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~ 1027 (1121)
|+|++++++++++.+++.||||+||++|++.++ ++ ...+|..++||.++|+++||||||||+++|||+|++|++
T Consensus 581 r~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~ 660 (751)
T 3eh1_A 581 RVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDN 660 (751)
T ss_dssp HHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCH
T ss_pred HHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCH
Confidence 999999999999999999999999999998643 11 135788899999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCC-cccccCCCCcHhHHHHHHHHHHHHHccCCcceEEEEecCCCcHHHHHhhcccCCCCCCCCCHH
Q 001219 1028 SILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYV 1106 (1121)
Q Consensus 1028 ~ll~~lFGv~s~~~i~-~~~~lp~~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e~~f~~~LVED~~~~~~~SY~ 1106 (1121)
++++||||++++++++ ....||++||++++++|+||++||++|..+++++|+|++++.|.+|.++||||| +++++||+
T Consensus 661 ~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~-~~~~~SY~ 739 (751)
T 3eh1_A 661 NFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDR-TEAAFSYY 739 (751)
T ss_dssp HHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSC-BTTBCCHH
T ss_pred HHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccC-CCCCCCHH
Confidence 9999999999999998 567899999999999999999999999888999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHh
Q 001219 1107 EFLINIHRQIQL 1118 (1121)
Q Consensus 1107 dFL~~lHk~I~~ 1118 (1121)
||||+|||+|++
T Consensus 740 ~fL~~~h~~i~~ 751 (751)
T 3eh1_A 740 EFLLHVQQQICK 751 (751)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999974
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=6.6e-158 Score=1478.10 Aligned_cols=718 Identities=27% Similarity=0.513 Sum_probs=651.1
Q ss_pred CCCceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCcccccCCCCCCcccCCCCceecCce
Q 001219 391 ATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFM 470 (1121)
Q Consensus 391 ~~t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~ 470 (1121)
+++.|++.|+|||+|+|||+|||+||.+++++++++|||||+|+||+.+.++|+++|+++. .+|+||+||||||||||
T Consensus 165 ~~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~ 242 (926)
T 1m2v_B 165 PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFV 242 (926)
T ss_dssp GGGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTC
T ss_pred CCcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCce
Confidence 3589999999999999999999999999999999999999999999998777778999874 35999999999999999
Q ss_pred EEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhh
Q 001219 471 KFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTG 550 (1121)
Q Consensus 471 ~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEyvap~eY~~r~p~pp~yvFvIDvS~~av~sG 550 (1121)
+|+++|++|+||||++.|++|.+|+ ++++|+|.|+++||||+++||||+++++|++|++.+|+||||||||.+++++|
T Consensus 243 ~~~~~g~~W~CnfC~~~N~~P~~Y~--~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g 320 (926)
T 1m2v_B 243 TFIEQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSG 320 (926)
T ss_dssp EEETTTTEEECTTTCCEEECCGGGT--TTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSC
T ss_pred EEeCCCCEEEccCCCCCCCCchhhc--cccccCccccccCccccCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhh
Confidence 9999999999999999999999999 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCC-------CceEeecCCccccccCCcccceeehHHhH
Q 001219 551 ATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQ-------QPLMLIVPDVEDVYTPLQSDIIVPVSECR 622 (1121)
Q Consensus 551 ~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~-------~pqmlVvsDldd~fvPl~~~lLv~l~e~~ 622 (1121)
+|+++|++|+++|+.|++ +++++|||||||++||||+|+.++. +++|+|++|+||+|+|++++||++++||+
T Consensus 321 ~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~ 400 (926)
T 1m2v_B 321 LLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACR 400 (926)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccccccccCCCcccccccHHHHH
Confidence 999999999999999997 4589999999999999999998765 78999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecCCCCcCcccccccccccCCCCCCCcccccc-cc
Q 001219 623 QHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHK-LL 701 (1121)
Q Consensus 623 ~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~~e~~-ll 701 (1121)
+.|+++||+|+.+|.++++.++|+|+||++|+.+|+..||||++|++|+||+|+|+|+.|++.+ .++++||++ ++
T Consensus 401 ~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~~~----~~~~~ke~~~ll 476 (926)
T 1m2v_B 401 QNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESG----VVNTSKETAQLL 476 (926)
T ss_dssp HHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC--------CCTTHHHHHT
T ss_pred HHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhhCCEEEEEecCCCCCCCCccccccccc----ccCcccchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998865 567888877 99
Q ss_pred chhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCC--chhHHHHHHHHhccCCccccc
Q 001219 702 QPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALS--DPAKLYNDLRWNITRPQGFEA 779 (1121)
Q Consensus 702 ~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~--d~~~L~~dL~r~ltr~~g~~a 779 (1121)
+++++||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+.++ |..+|.+||.++|++++||+|
T Consensus 477 ~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a 556 (926)
T 1m2v_B 477 SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMET 556 (926)
T ss_dssp SCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred cchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeE
Confidence 999999999999999999999999999999999999999999999999999999875 778999999999999999999
Q ss_pred eEEEEeCCCcEEEeeeCccccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecCCcEEEEEEcccccC
Q 001219 780 VMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859 (1121)
Q Consensus 780 ~mrVR~S~GL~V~~~~G~f~~r~~~~~~lp~id~dtSia~el~~d~~L~~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpV 859 (1121)
+||||||+||+|+++||||+.+++++|+++++++|+||+|+|++++++. ...+|||+|++||+.+|+|||||||++++|
T Consensus 557 ~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~v 635 (926)
T 1m2v_B 557 VMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPT 635 (926)
T ss_dssp EEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEE
T ss_pred EEEEEeCCCcEEEEeecCccccCcCceEeeccCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEeecccc
Confidence 9999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred CCCHHHHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCC--cccchhhhchHHHHHH
Q 001219 860 TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLLPLYTL 937 (1121)
Q Consensus 860 ts~l~~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~lv~iL~~Yrk~~a~~~s~g--qLiLPesLklLPlyil 937 (1121)
++++.++|+++|+||++++|+|+|+++++++++.|+|++|+++|+++|++|||+|+..++.+ +|+||++||+||+|+|
T Consensus 636 t~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~ 715 (926)
T 1m2v_B 636 TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMH 715 (926)
T ss_dssp ESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHH
T ss_pred cCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765554 5999999999999999
Q ss_pred HHhhccCCC-CCCCchHHHHHHHHHcCCChhhhhhcccceeEEeecCCCC------------CCCCCCCCcccccccccc
Q 001219 938 ALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG------------EDGSIIPPFLPLSSEHVS 1004 (1121)
Q Consensus 938 ~LlKS~~L~-~~~s~DeR~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~~~------------d~~~~lP~~l~LS~e~L~ 1004 (1121)
+|+||.+|+ .+++.|||++++++++++++..++.||||+||+||++.++ +++..+|++++||.++|+
T Consensus 716 ~L~KS~~l~~~~~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~ 795 (926)
T 1m2v_B 716 SLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFE 795 (926)
T ss_dssp HHHTSTTTCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCC
T ss_pred HHhcchhhCCCCCCccHHHHHHHHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhc
Confidence 999999999 4455599999999999999999999999999999987322 234678999999999999
Q ss_pred CCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCC-cccccCCC-CcHhHHHHHHHHHHHHHccC--CcceEEEEe
Q 001219 1005 DEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQY-DNPLSKKLNDVVNEIRRQRC--SYLRLKLCK 1080 (1121)
Q Consensus 1005 ~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~-~~~~lp~~-dn~ls~~l~~iI~~lr~~r~--~y~~l~ivr 1080 (1121)
++|+||||+|..+|||+|++++++++++|||++++.+++ ....||++ ||+++++||+||++||++|. .|++|+|||
T Consensus 796 ~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr 875 (926)
T 1m2v_B 796 RYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVR 875 (926)
T ss_dssp TTCEEEEECSSEEEEEECTTCCSGGGC-------------------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC
T ss_pred cCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCchhhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEe
Confidence 999999999999999999999999999999999999998 56679998 99999999999999999986 578899998
Q ss_pred cCCC--------------cHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHh
Q 001219 1081 KGDP--------------SGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQL 1118 (1121)
Q Consensus 1081 qg~~--------------~e~~f~~~LVED~~~~~~~SY~dFL~~lHk~I~~ 1118 (1121)
+++. .|.+|.++||||+ +++.+||+||||+|||+|++
T Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~-~~~~~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 876 GASLSEPVNHASAREVATLRLWASSTLVEDK-ILNNESYREFLQIMKARISK 926 (926)
T ss_dssp ------------CCHHHHHHHHHHHTCTTSS-CTTCCCHHHHHHHHHHHHCC
T ss_pred cCCCCCccccccccchhhHHHHHHHhCeecC-CCCCCCHHHHHHHHHHHhhC
Confidence 7643 3468999999999 88999999999999999974
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=2.5e-157 Score=1466.01 Aligned_cols=718 Identities=27% Similarity=0.515 Sum_probs=650.1
Q ss_pred CCCceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCcccccCCCCCCcccCCCCceecCce
Q 001219 391 ATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFM 470 (1121)
Q Consensus 391 ~~t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~ 470 (1121)
+++.|++.|+|||+|+|||+|||+||.+++++++++||||++|+||+.+.++|+++|+++. .+|+||++|||||||||
T Consensus 49 ~~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~ 126 (810)
T 1pcx_A 49 PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFV 126 (810)
T ss_dssp GGGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTC
T ss_pred CCCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCce
Confidence 5688999999999999999999999999999999999999999999998777778999874 35999999999999999
Q ss_pred EEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhh
Q 001219 471 KFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTG 550 (1121)
Q Consensus 471 ~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEyvap~eY~~r~p~pp~yvFvIDvS~~av~sG 550 (1121)
+|+++|++|+||||++.|++|.+|+ ++++|+|.|+++||||++|||||+++++|+.|++.||+||||||||.+++++|
T Consensus 127 ~~~~~g~~W~C~~C~~~N~~P~~y~--~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g 204 (810)
T 1pcx_A 127 TFIEQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSG 204 (810)
T ss_dssp EEETTTTEEECTTTCCEEECCGGGG--C-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHT
T ss_pred EEeCCCCEEEccCCCCcCCCchhhc--cccccCccccccCccccCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhh
Confidence 9999999999999999999999999 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCC-------CceEeecCCccccccCCcccceeehHHhH
Q 001219 551 ATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQ-------QPLMLIVPDVEDVYTPLQSDIIVPVSECR 622 (1121)
Q Consensus 551 ~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~-------~pqmlVvsDldd~fvPl~~~lLv~l~e~~ 622 (1121)
+|+++|++|+++|+.|++ +++++|||||||++||||+++.++. +++|+|++|++|+|+|++++||++++||+
T Consensus 205 ~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~ 284 (810)
T 1pcx_A 205 LLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACR 284 (810)
T ss_dssp HHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHH
Confidence 999999999999999997 3579999999999999999998765 79999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecCCCCcCcccccccccccCCCCCCCcccccc-cc
Q 001219 623 QHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHK-LL 701 (1121)
Q Consensus 623 ~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~~e~~-ll 701 (1121)
+.|+++||+|+.+|.++++.++|+|+||++|..+|+..||||++|++|+||+|+|+|+.|++.+ .++++||+. ++
T Consensus 285 ~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~~~----~~~~~ke~~~l~ 360 (810)
T 1pcx_A 285 QNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESG----VVNTSKETAQLL 360 (810)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC---------------------
T ss_pred HHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCCccccccccc----ccCcccchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998865 567778876 99
Q ss_pred chhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCC--chhHHHHHHHHhccCCccccc
Q 001219 702 QPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALS--DPAKLYNDLRWNITRPQGFEA 779 (1121)
Q Consensus 702 ~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~--d~~~L~~dL~r~ltr~~g~~a 779 (1121)
+++++||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+.++ |..+|.+||.++|++++||+|
T Consensus 361 ~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a 440 (810)
T 1pcx_A 361 SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMET 440 (810)
T ss_dssp ---CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred ccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHHHhhhhcceeE
Confidence 999999999999999999999999999999999999999999999999999999875 778999999999999999999
Q ss_pred eEEEEeCCCcEEEeeeCccccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecCCcEEEEEEcccccC
Q 001219 780 VMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859 (1121)
Q Consensus 780 ~mrVR~S~GL~V~~~~G~f~~r~~~~~~lp~id~dtSia~el~~d~~L~~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpV 859 (1121)
+||||||+||+|+++||||+.+++++|+++++++|++|+|+|++++++. ...+|||+|++||+.+|+|||||||++++|
T Consensus 441 ~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~v 519 (810)
T 1pcx_A 441 VMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPT 519 (810)
T ss_dssp EEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEecCccc
Confidence 9999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred CCCHHHHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCC--cccchhhhchHHHHHH
Q 001219 860 TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLLPLYTL 937 (1121)
Q Consensus 860 ts~l~~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~lv~iL~~Yrk~~a~~~s~g--qLiLPesLklLPlyil 937 (1121)
++++.++|+++|+||++++|+|+|+++++++++.|+|++|+++|+++|++|||+|+..++.+ +|+||++||+||+|+|
T Consensus 520 t~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~ 599 (810)
T 1pcx_A 520 TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMH 599 (810)
T ss_dssp ESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC----CCSSCCEEEGGGTTHHHHHH
T ss_pred cCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765544 6999999999999999
Q ss_pred HHhhccCCCC-CCCchHHHHHHHHHcCCChhhhhhcccceeEEeecCCCC------------CCCCCCCCcccccccccc
Q 001219 938 ALIKSTGLRT-DGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG------------EDGSIIPPFLPLSSEHVS 1004 (1121)
Q Consensus 938 ~LlKS~~L~~-~~s~DeR~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~~~------------d~~~~lP~~l~LS~e~L~ 1004 (1121)
+|+||.+|+. +++.|||++++++++++++..++.||||+||++|++.++ ++...+|++++||.+.|+
T Consensus 600 ~L~ks~~l~~~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~ 679 (810)
T 1pcx_A 600 SLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFE 679 (810)
T ss_dssp HHHTSTTTCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCC
T ss_pred HHhcchhcCCCCCCccHHHHHHHHHHcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhC
Confidence 9999999994 455599999999999999999999999999999987322 234678999999999999
Q ss_pred CCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCC-cccccCCC-CcHhHHHHHHHHHHHHHccC--CcceEEEEe
Q 001219 1005 DEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQY-DNPLSKKLNDVVNEIRRQRC--SYLRLKLCK 1080 (1121)
Q Consensus 1005 ~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~-~~~~lp~~-dn~ls~~l~~iI~~lr~~r~--~y~~l~ivr 1080 (1121)
++|+||||+|+.+|||+|++++++++++|||++++.+++ ....||++ ||+++++||++|++||++|. .|++++|||
T Consensus 680 ~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr 759 (810)
T 1pcx_A 680 RYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVR 759 (810)
T ss_dssp TTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEE
T ss_pred cCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCchhhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEe
Confidence 999999999999999999999999999999999999998 56679998 99999999999999999986 678899999
Q ss_pred cCCC--------------cHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHh
Q 001219 1081 KGDP--------------SGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQL 1118 (1121)
Q Consensus 1081 qg~~--------------~e~~f~~~LVED~~~~~~~SY~dFL~~lHk~I~~ 1118 (1121)
|++. .|.+|.++||||+ +++.+||+||||+|||+|++
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~-~~~~~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 760 GASLSEPVNHASAREVATLRLWASSTLVEDK-ILNNESYREFLQIMKARISK 810 (810)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHHHTTCTTSC-BTTBCCHHHHHHHHHHHTCC
T ss_pred cCCCCCccccccccchhhHHHHHHHhCeecC-CCCCCCHHHHHHHHHHHhhC
Confidence 8753 3568999999999 88999999999999999974
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=9.6e-132 Score=1231.92 Aligned_cols=667 Identities=18% Similarity=0.253 Sum_probs=585.8
Q ss_pred CCCCCceEeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCcccccCCCCCCcccCC--CCceecCceEEEecCCeE
Q 001219 402 NCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR--CKAYINPFMKFIDQGRRF 479 (1121)
Q Consensus 402 N~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pfa~~~~~e~pvPvvd~g~~~pvRC~r--CrAYiNPf~~f~~~g~~W 479 (1121)
||+++|||+|||+||.|++++++++||||++|+||++. +++|+|++ +|+||++ |||||||||+|+++|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~---~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPY---NPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECS---CCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCCC---CCCccCCCCCCeEECCceEEeCCCCEE
Confidence 89999999999999999999999999999999999964 23899875 6999999 999999999999999999
Q ss_pred EecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHH
Q 001219 480 ICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559 (1121)
Q Consensus 480 ~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEyvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI 559 (1121)
+||||++.|++|.+|+ +++++ +.||||+++||||++++ +++.||+||||||||.++++ ++++|++|
T Consensus 79 ~C~~C~~~N~~P~~y~-~~~~~------~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl 144 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYT-NLSQE------NMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESI 144 (768)
T ss_dssp CCTTTCCCCBCCGGGC-C---C------CCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHH
T ss_pred EcccCCCCCCCChHHc-cCCcc------cCChhhccCCEEEECCC----CCCCCCEEEEEEECCcCHHH---HHHHHHHH
Confidence 9999999999999998 66543 56899999999999997 47899999999999999987 89999999
Q ss_pred HHHHhcCCCCCCceEEEEEeCCEEEEEecCCCC---------------CCceEee--cCC-----c-----cccccCC--
Q 001219 560 SQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQPLMLI--VPD-----V-----EDVYTPL-- 610 (1121)
Q Consensus 560 ~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~---------------~~pqmlV--vsD-----l-----dd~fvPl-- 610 (1121)
+++|+.||++ ++|||||||++||||+++..+ ++.++++ ++| + +|.|+|+
T Consensus 145 ~~~L~~Lp~~--~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~ 222 (768)
T 1m2o_A 145 ITSLSLLPPN--ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPF 222 (768)
T ss_dssp HHHHHTSCTT--CEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSS
T ss_pred HHHHHhCCCC--CEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccccccC
Confidence 9999999976 899999999999999999764 2233333 333 2 6767776
Q ss_pred -cccceeehHHhHHHHHHHHhhcCc---cccCCCCCcchHHHHHHHHHHHHH----hcCCeEEEEecCCCCcCccccccc
Q 001219 611 -QSDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSVGIGALSAR 682 (1121)
Q Consensus 611 -~~~lLv~l~e~~~~I~~lLd~Lp~---~f~~~~~~~~~lG~AL~aA~~lL~----~~GGkIivF~sg~Pt~GpG~L~~r 682 (1121)
+++||++++||++.|+++||+|+. ++.+++++++|+|+||++|..+|+ ..||||++|++|+||+|||+|+.|
T Consensus 223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred CccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccc
Confidence 589999999999999999999988 788889999999999999999999 589999999999999999999999
Q ss_pred ccccCCCCCCCccc-cccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCCchh
Q 001219 683 EAEGRSNISSGEKE-THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPA 761 (1121)
Q Consensus 683 e~~~r~~~~~gt~~-e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~d~~ 761 (1121)
+++......++.+| ++++++++++||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+. +
T Consensus 303 ~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~----~ 378 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFST----A 378 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTS----H
T ss_pred ccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCch----H
Confidence 87541100122234 478999999999999999999999999999999999999999999999999999999976 4
Q ss_pred HHHHHHHHhccC------CccccceEEEEeCCCcEEEeeeCccc----------------cCCCCceeecCCCCCCeEEE
Q 001219 762 KLYNDLRWNITR------PQGFEAVMRVRCSQGIQVQEYHGNFC----------------KRIPTDIDLPAIDCNKAIMV 819 (1121)
Q Consensus 762 ~L~~dL~r~ltr------~~g~~a~mrVR~S~GL~V~~~~G~f~----------------~r~~~~~~lp~id~dtSia~ 819 (1121)
+|.++|+|.+++ ++||+|+||||||+||+|+++||||+ .+++++|+++++|+|++|+|
T Consensus 379 ~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v 458 (768)
T 1m2o_A 379 IFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAI 458 (768)
T ss_dssp HHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEE
Confidence 789999999998 79999999999999999999999998 46788999999999999999
Q ss_pred EEEecCCCC-------------CCCceEEEEEEEEEecCCcEEEEEEcccccCCCC-HHHHHhccChhHHHHHHHHHHHH
Q 001219 820 TLKHDDKLQ-------------DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSN-LSNLYRSADLDTQFTCFMKQAAS 885 (1121)
Q Consensus 820 el~~d~~L~-------------~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpVts~-l~~vf~~~D~dai~~~laK~a~~ 885 (1121)
+|++++++. +...+|||+|++||+.+|+|||||||++++|+++ +.++|+++|+||++++|+|+|++
T Consensus 459 ~f~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~ 538 (768)
T 1m2o_A 459 FFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVH 538 (768)
T ss_dssp EEEECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEeccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999863 4678999999999999999999999999999986 99999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH---HHHHhhcccCCCCCcccchhhhchHHHHHHHHhhccCCC-CCCCchHHHHHHHHH
Q 001219 886 EIPSTPLANVREQMMNLCVNAL---VSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYV 961 (1121)
Q Consensus 886 ~~~~~~l~d~R~~L~~~lv~iL---~~Yrk~~a~~~s~gqLiLPesLklLPlyil~LlKS~~L~-~~~s~DeR~~~~~~l 961 (1121)
+++++++.|+|+||++++++++ ..|||.| +++|+||++||+||+|+|+|+||.+|+ .++++|||+++++.+
T Consensus 539 ~~~~~~~~d~r~~l~~~li~l~~~~~~Yrk~~-----~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l 613 (768)
T 1m2o_A 539 KAETDDGADVIRWLDRTLIKLCQKYADYNKDD-----PQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIF 613 (768)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHSBCCTTC-----GGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC-----ccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHH
Confidence 9999999999999999998884 4777766 358999999999999999999999999 899999999999999
Q ss_pred cCCChhhhhhcccceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhC-CCCCC
Q 001219 962 SSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFG-ISSVD 1040 (1121)
Q Consensus 962 ~s~~v~~~l~~lYPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFG-v~s~~ 1040 (1121)
+++++..++.||||+||++|.. + .|++++||.++|+++||||||+|++++||+|+.++.| +++.|+ ++.++
T Consensus 614 ~~~~~~~~l~~iyP~L~~~~~~----~---~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~-~~~~~~~~~~~~ 685 (768)
T 1m2o_A 614 TREDTTNSLIMIQPTLTSFSME----D---DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQW-RKAGYQDDPQYA 685 (768)
T ss_dssp TTSCHHHHHHHHSCEEEEECSS----S---CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHH-HHHTGGGSTTCH
T ss_pred HcCCHHHHHHhhCCeEEEecCC----C---CCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHH-HhcccCCCchhh
Confidence 9999999999999999999963 1 5889999999999999999999999999999999865 555554 44433
Q ss_pred CCCcccccCCCCcHhHHHHHHHHHHHHHccCCcceEEEEecCCCcHHHHHhhcccCCCC------------CCCCCHHHH
Q 001219 1041 EVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIP------------TGGQSYVEF 1108 (1121)
Q Consensus 1041 ~i~~~~~lp~~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e~~f~~~LVED~~~------------~~~~SY~dF 1108 (1121)
++. .+.+..+..+++|++.|...++++++++|++++++|+++|+||+.. .++.||.+|
T Consensus 686 ~~~----------~ll~~p~~~a~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f 755 (768)
T 1m2o_A 686 DFK----------ALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNF 755 (768)
T ss_dssp HHH----------HHHHHHHHHHHHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHH
T ss_pred hHH----------HHhhhhHHHHHHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHH
Confidence 321 2333445667788889999999999999999999999999999831 147999999
Q ss_pred HHHHHHHHHh
Q 001219 1109 LINIHRQIQL 1118 (1121)
Q Consensus 1109 L~~lHk~I~~ 1118 (1121)
|+||||+|.+
T Consensus 756 ~~~L~k~~v~ 765 (768)
T 1m2o_A 756 MTHLQQVAVS 765 (768)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=9.3e-131 Score=1222.20 Aligned_cols=675 Identities=19% Similarity=0.259 Sum_probs=585.8
Q ss_pred CceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCcccccCCCCCCcccCC--CCceecCce
Q 001219 393 SEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR--CKAYINPFM 470 (1121)
Q Consensus 393 t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pfa~~~~~e~pvPvvd~g~~~pvRC~r--CrAYiNPf~ 470 (1121)
.+|...|++||+|+|||+|||+||.+++++++++||||++|+||++. +++|+|++ +|+||++ |||||||||
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~---~pvRC~~~~CrayiNPf~ 78 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQY---EPVLCSRTTCRAVLNPLC 78 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBCS---CCCBCSSTTCCCBCCTTS
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC----CCCCcCCC---CCCcCCCCCCCeEECCce
Confidence 56778889999999999999999999999999999999999999964 23898875 6999999 999999999
Q ss_pred EEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCc--cCccEEEEeccccccCCCCCcEEEEEEEcchhHHh
Q 001219 471 KFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL--CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQ 548 (1121)
Q Consensus 471 ~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL--~~gtVEyvap~eY~~r~p~pp~yvFvIDvS~~av~ 548 (1121)
+|+++|++|+||||++.|++|.+|+ +++.. +.|||| +++||||+++++| +.+|+||||||||.++++
T Consensus 79 ~~~~~~~~W~C~~C~~~N~~P~~Y~-~~~~~------~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~ 147 (769)
T 2nut_A 79 QVDYRAKLWACNFCYQRNQFPPSYA-GISEL------NQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED 147 (769)
T ss_dssp EEETTTTEEECSSSCCEEECCGGGT-TCBTT------BCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH
T ss_pred EEeCCCCEEEccCCCCCCCCChHHc-cCCcc------cCChhhcCCCCcEEEEccCCC----CCCCEEEEEEECCccHHH
Confidence 9999999999999999999999998 66543 568999 8999999999998 789999999999999998
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCC---------------CCce-EeecCC----c-----
Q 001219 549 TGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQPL-MLIVPD----V----- 603 (1121)
Q Consensus 549 sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~---------------~~pq-mlVvsD----l----- 603 (1121)
++++|++|+++|+.||++ ++|||||||++||||+++.++ ++++ |++++| +
T Consensus 148 ---l~~l~~si~~~L~~Lp~~--~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~ 222 (769)
T 2nut_A 148 ---LQALKESMQMSLSLLPPT--ALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGP 222 (769)
T ss_dssp ---HHHHHHHHHHHHTTSCTT--CEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------
T ss_pred ---HHHHHHHHHHHHHhCCCC--ceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccc
Confidence 899999999999999976 899999999999999999865 3444 455775 3
Q ss_pred cccc-cCCcccceeehHHhHHHHHHHHhhcCc---cccCCCCCcchHHHHHHHHHHHHH----hcCCeEEEEecCCCCcC
Q 001219 604 EDVY-TPLQSDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSVG 675 (1121)
Q Consensus 604 dd~f-vPl~~~lLv~l~e~~~~I~~lLd~Lp~---~f~~~~~~~~~lG~AL~aA~~lL~----~~GGkIivF~sg~Pt~G 675 (1121)
+|+| +|+ ++||++++||++.|+++||+|+. ++.++++.++|+|+||++|..+|+ .+||||++|++|+||.|
T Consensus 223 ~~~f~~p~-~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~G 301 (769)
T 2nut_A 223 QVQQPPPS-NRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG 301 (769)
T ss_dssp ------CC-CSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSS
T ss_pred cccCCCcc-cceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCC
Confidence 7887 555 89999999999999999999988 457888999999999999999999 68999999999999999
Q ss_pred cccccccccccCCCCCCCcccc-ccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCC
Q 001219 676 IGALSAREAEGRSNISSGEKET-HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPF 754 (1121)
Q Consensus 676 pG~L~~re~~~r~~~~~gt~~e-~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F 754 (1121)
||+|+.|+++......++++|| +++++++++||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|
T Consensus 302 pG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F 381 (769)
T 2nut_A 302 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSF 381 (769)
T ss_dssp SSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCS
T ss_pred CCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCC
Confidence 9999999875411101234454 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhccC------CccccceEEEEeCCCcEEEeeeCccc---------------cCCCCceeecCCCC
Q 001219 755 SALSDPAKLYNDLRWNITR------PQGFEAVMRVRCSQGIQVQEYHGNFC---------------KRIPTDIDLPAIDC 813 (1121)
Q Consensus 755 ~~~~d~~~L~~dL~r~ltr------~~g~~a~mrVR~S~GL~V~~~~G~f~---------------~r~~~~~~lp~id~ 813 (1121)
+.+ +|.++|+|.+++ ++||+|+||||||+||+|+++||||+ .+++++|+++++|+
T Consensus 382 ~~~----~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~ 457 (769)
T 2nut_A 382 NTS----LFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSP 457 (769)
T ss_dssp SSH----HHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECT
T ss_pred chh----hHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCC
Confidence 875 566666666665 79999999999999999999999986 57889999999999
Q ss_pred CCeEEEEEEecCC----CCCCCceEEEEEEEEEecCCcEEEEEEcccccCCCCH---HHHHhccChhHHHHHHHHHHHHh
Q 001219 814 NKAIMVTLKHDDK----LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNL---SNLYRSADLDTQFTCFMKQAASE 886 (1121)
Q Consensus 814 dtSia~el~~d~~----L~~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpVts~l---~~vf~~~D~dai~~~laK~a~~~ 886 (1121)
|++|+|+|+++++ +.++..+|||+|++||+.+|+|||||||++++|++++ .++|+++|+||++++|+|+|+++
T Consensus 458 d~s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~ 537 (769)
T 2nut_A 458 TTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYR 537 (769)
T ss_dssp TCCEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEecCccccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999987 4466889999999999999999999999999999987 59999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH---HHHHHhhcccCCCCCcccchhhhchHHHHHHHHhhccCCC-CCCCchHHHHHHHHHc
Q 001219 887 IPSTPLANVREQMMNLCVNA---LVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVS 962 (1121)
Q Consensus 887 ~~~~~l~d~R~~L~~~lv~i---L~~Yrk~~a~~~s~gqLiLPesLklLPlyil~LlKS~~L~-~~~s~DeR~~~~~~l~ 962 (1121)
++++++.|+|+||+++++++ +..|||.| +++|+||++||+||+|+|+|+||.+|+ .++++|||++++++++
T Consensus 538 ~~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~-----~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~ 612 (769)
T 2nut_A 538 AETEEGPDVLRWLDRQLIRLCQKFGEYHKDD-----PSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFM 612 (769)
T ss_dssp HTTC---CHHHHHHHHHHHHHHHHCBCCTTC-----GGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHhCcC-----cccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHH
Confidence 99999999999999998776 55677776 467999999999999999999999999 7999999999999999
Q ss_pred CCChhhhhhcccceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCC
Q 001219 963 SVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEV 1042 (1121)
Q Consensus 963 s~~v~~~l~~lYPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i 1042 (1121)
++++.+++.||||+||++|... .|++++||.++|+++||||||+|+++|||+|+.++.|+...+.+.+..+++
T Consensus 613 ~~~~~~~~~~iyP~L~~~~~~~-------~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~ 685 (769)
T 2nut_A 613 RQDLTQSLIMIQPILYAYSFSG-------PPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENF 685 (769)
T ss_dssp TCCHHHHHHHHSCEEEEECSSS-------SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHH
T ss_pred cCCHHHHHHhhcCEEEeccCCC-------CCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhH
Confidence 9999999999999999999732 488999999999999999999999999999999987777644432211111
Q ss_pred CcccccCCCCcHhHHHHHHHHHHHHHccCCcceEEEEecCCCcHHHHHhhcccCCC---------------CCCCCCHHH
Q 001219 1043 PTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKI---------------PTGGQSYVE 1107 (1121)
Q Consensus 1043 ~~~~~lp~~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e~~f~~~LVED~~---------------~~~~~SY~d 1107 (1121)
.++.+..++.+++|+++|.++++++++++|++++++|+++|..... ..++.||..
T Consensus 686 ----------~~~l~~p~~~a~~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~ 755 (769)
T 2nut_A 686 ----------RHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQV 755 (769)
T ss_dssp ----------HHHHHHHHHHHHHHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHH
T ss_pred ----------HHHHHhHHHHHHHHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHH
Confidence 2455567789999999999999999999999999999999986221 113899999
Q ss_pred HHHHHHHHHH
Q 001219 1108 FLINIHRQIQ 1117 (1121)
Q Consensus 1108 FL~~lHk~I~ 1117 (1121)
|+.||+|.+.
T Consensus 756 f~~~l~~~~v 765 (769)
T 2nut_A 756 FMDHLKKLAV 765 (769)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.45 E-value=1.9e-14 Score=122.42 Aligned_cols=44 Identities=30% Similarity=0.663 Sum_probs=41.6
Q ss_pred CCCCcccCC--CCceecCceEEEecCCeEEecCCCCCCCCCccccc
Q 001219 453 DMGPVRCSR--CKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHC 496 (1121)
Q Consensus 453 ~~~pvRC~r--CrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~~Y~~ 496 (1121)
+.+|+||++ |||||||||+|++++++|+|+||+..|++|.+|+.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~ 51 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAG 51 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhc
Confidence 467999999 99999999999999999999999999999999973
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.21 E-value=1.2e-08 Score=120.73 Aligned_cols=305 Identities=10% Similarity=0.048 Sum_probs=190.5
Q ss_pred CcEEEEEEEcchhHHh-hhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCc
Q 001219 533 PAVFFFLIDVSMNALQ-TGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~-sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~ 611 (1121)
+..++||||+|.+... ...++.++++++..|+.|..+ .+||||+|++..+.+-- +.
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~--drv~lV~Fs~~a~~~~p---------------------~t 133 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG--AFFAVVAGTEGARVVYP---------------------TG 133 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT--CEEEEEEESSSEEEEES---------------------SS
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCC--CEEEEEEEcCceEEEec---------------------CC
Confidence 4569999999998751 234789999999999999765 69999999987764321 00
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcC---CeEEEEecCCCCcCcccccccccccCC
Q 001219 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG---GKLLVFQSVLPSVGIGALSAREAEGRS 688 (1121)
Q Consensus 612 ~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G---GkIivF~sg~Pt~GpG~L~~re~~~r~ 688 (1121)
.++..--.+.++.+.+.|+.|.. ...+.++.||..|..+|+... ..||++++|.++.+.
T Consensus 134 ~~l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~------------ 195 (464)
T 4fx5_A 134 GQLLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET------------ 195 (464)
T ss_dssp SSCEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC------------
T ss_pred cccccCCHHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCC------------
Confidence 01111112456677777888752 346789999999999997643 468888888765310
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCCchhHHHHHHH
Q 001219 689 NISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLR 768 (1121)
Q Consensus 689 ~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~d~~~L~~dL~ 768 (1121)
.... .+ +.+..+.+|.|+.|.+.. ..|...|..|++.|||..++..++. +......++.
T Consensus 196 ---------------~~~l-~~-~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~v~d~~---~L~~~f~~i~ 254 (464)
T 4fx5_A 196 ---------------PADL-AR-AIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGIIRDPA---TLAEDFREMT 254 (464)
T ss_dssp ---------------HHHH-HH-HHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEEESSGG---GHHHHHHHHH
T ss_pred ---------------hHHH-HH-HHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEEEcCCHH---HHHHHHHHHH
Confidence 0011 11 122446788888888864 4677889999999999999887643 2333444444
Q ss_pred HhccCCccccceEEEEeCCCcEEEeeeCc------cc-cC------CCCceeecCCCCCCeE--EEEEEecCCCCCCCce
Q 001219 769 WNITRPQGFEAVMRVRCSQGIQVQEYHGN------FC-KR------IPTDIDLPAIDCNKAI--MVTLKHDDKLQDGSEC 833 (1121)
Q Consensus 769 r~ltr~~g~~a~mrVR~S~GL~V~~~~G~------f~-~r------~~~~~~lp~id~dtSi--a~el~~d~~L~~~~~~ 833 (1121)
..+.....-++.++|++..|+.+..+..- +. .+ ....+.++.+ .+.+- .++|++... ..+...
T Consensus 255 ~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~-~~g~~~ 332 (464)
T 4fx5_A 255 AKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPG-NIGQEK 332 (464)
T ss_dssp HHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCC-CTTCEE
T ss_pred HHhhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCC-CCCcee
Confidence 44556788899999999999988765221 11 11 1235778888 66554 455554443 224444
Q ss_pred E-EEEEEEEEecCCcEEEEEEcccccCCCCHH-------HHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001219 834 A-FQCALLYTTVYGQRRIRVTTLSLPCTSNLS-------NLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNL 902 (1121)
Q Consensus 834 ~-~Q~AlLYT~~~GeRrIRV~Tl~lpVts~l~-------~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~ 902 (1121)
. .++.+.|.+..|++.+.=..+.+.++.+.. +|-+...+..++. ..+++...+..+.+..+...|...
T Consensus 333 ~~~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~~a~-~~~~a~~~~~~gd~~~A~~~L~~A 408 (464)
T 4fx5_A 333 LAGRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMAA-AIQEGLDAQAAGDLDTATARLGRA 408 (464)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEEEEEEcCCCccccccccceEEEEEccccccCCCCHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 799999999888743322234444444432 3333332222222 223444455556666666655543
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2e-07 Score=97.94 Aligned_cols=172 Identities=18% Similarity=0.173 Sum_probs=123.0
Q ss_pred CCcEEEEEEEcchhHHhh----hHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccc
Q 001219 532 MPAVFFFLIDVSMNALQT----GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~s----G~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~f 607 (1121)
.+..++||||+|.+.... ..++.+++.++..++.+++ .+||||+|++..+..
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~---~~v~lv~F~~~~~~~--------------------- 65 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN---DKVGMIVFAGDAFTQ--------------------- 65 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS---CEEEEEEESSSEEEE---------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC---CeEEEEEECCCceEe---------------------
Confidence 456799999999987543 2578999999999999873 699999998765432
Q ss_pred cCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc---CCeEEEEecCCCCcCccccccccc
Q 001219 608 TPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSVLPSVGIGALSAREA 684 (1121)
Q Consensus 608 vPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re~ 684 (1121)
+++...++.+..+|+.|..... ....+.++.||..|...++.. ...|+++++|.++.|
T Consensus 66 --------~~~~~~~~~~~~~l~~l~~~~~--~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~--------- 126 (218)
T 3ibs_A 66 --------LPITSDYISAKMFLESISPSLI--SKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG--------- 126 (218)
T ss_dssp --------EEEESCHHHHHHHHHTCCGGGC--CSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS---------
T ss_pred --------CCCCCCHHHHHHHHHhcCcccC--CCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC---------
Confidence 1111234567778888864221 245678999999999988753 356777777765443
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCC------------------------ccCccccccc
Q 001219 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT------------------------YVDIASISVI 740 (1121)
Q Consensus 685 ~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~------------------------~~dlatL~~L 740 (1121)
-..+++..+.+.+|.|.++.+... ..|...|..|
T Consensus 127 ----------------------~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~i 184 (218)
T 3ibs_A 127 ----------------------GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEI 184 (218)
T ss_dssp ----------------------CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHH
T ss_pred ----------------------cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHH
Confidence 024566778889999999988864 5677889999
Q ss_pred ccccceEEEEeCCCCCCCchhHHHHHHHHh
Q 001219 741 PKTTGGQVYYYYPFSALSDPAKLYNDLRWN 770 (1121)
Q Consensus 741 a~~TGG~v~~y~~F~~~~d~~~L~~dL~r~ 770 (1121)
|+.|||..++..+- ..+...+.++|.+.
T Consensus 185 A~~~gG~~~~~~~~--~~~~~~~~~~i~~l 212 (218)
T 3ibs_A 185 AKDGKGIYVRVDNS--NSAQKAISQEISKM 212 (218)
T ss_dssp HHHTEEEEEEECSS--SHHHHHHHHHHHHH
T ss_pred HHhcCCEEEECCCC--hHHHHHHHHHHHHh
Confidence 99999998887652 22445666666654
No 11
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.35 E-value=8.4e-06 Score=83.10 Aligned_cols=154 Identities=11% Similarity=0.095 Sum_probs=102.3
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCccc
Q 001219 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1121)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~~ 613 (1121)
.-++||||+|.+.-.. .+.+++.+++.++.+-. ++.+||||+|++.++..-
T Consensus 8 ~div~vlD~SgSM~~~--~~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~-------------------------- 58 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHH--WNEIYYFVEQLAHKFIS-PQLRMSFIVFSTRGTTLM-------------------------- 58 (185)
T ss_dssp EEEEEEEECSGGGGGG--HHHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE--------------------------
T ss_pred eeEEEEEeCCCChhhh--HHHHHHHHHHHHHHhCC-CCcEEEEEEEecCceEEe--------------------------
Confidence 3579999999987543 45667777777777633 468999999987664321
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHH--hcCC-----eEEEEecCCCCcCccccccccccc
Q 001219 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALK--STGG-----KLLVFQSVLPSVGIGALSAREAEG 686 (1121)
Q Consensus 614 lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~--~~GG-----kIivF~sg~Pt~GpG~L~~re~~~ 686 (1121)
++.+.++.+...|+.|..+. ....+.+|.||+.|...|. ..++ .|+++++|.++.+.
T Consensus 59 ---~l~~~~~~~~~~i~~l~~~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~---------- 122 (185)
T 3n2n_F 59 ---KLTEDREQIRQGLEELQKVL---PGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDL---------- 122 (185)
T ss_dssp ---EEECCHHHHHHHHHHHHTCC---CCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHH----------
T ss_pred ---ccCCCHHHHHHHHHHHhhhc---CCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCc----------
Confidence 11124455666777776432 2456789999999999773 2333 56677766542110
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCC
Q 001219 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1121)
Q Consensus 687 r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~ 753 (1121)
..-.++.+.++.+.||.|..+.+. ..|...|..++.. +|.+|+..+
T Consensus 123 ------------------~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 123 ------------------FFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp ------------------HHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHH
T ss_pred ------------------ccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEecc
Confidence 001245777788889877777765 6788899999965 577877664
No 12
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.34 E-value=1.3e-05 Score=81.49 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=99.4
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCcc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~ 612 (1121)
+.-++||||+|.+..... . ..++.+++.+..+-+ ++.+||||+|++..+..- +
T Consensus 6 ~~dvv~vlD~SgSM~~~~-~-~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~---------------------~--- 58 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNW-I-EIYNFVQQLAERFVS-PEMRLSFIVFSSQATIIL---------------------P--- 58 (182)
T ss_dssp CEEEEEEEECSGGGGGGH-H-HHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE---------------------E---
T ss_pred ceeEEEEEECCCCcccCH-H-HHHHHHHHHHHHhcC-CCceEEEEEeCCCceEEE---------------------C---
Confidence 456899999999875432 2 244555555555433 458999999988654321 0
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcCcccccccccccC
Q 001219 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREAEGR 687 (1121)
Q Consensus 613 ~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re~~~r 687 (1121)
+...++.+..+|+.|.... ....+.++.||..|...++.. ...|+++++|.++.+
T Consensus 59 -----~~~~~~~~~~~l~~l~~~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~------------ 118 (182)
T 1shu_X 59 -----LTGDRGKISKGLEDLKRVS---PVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL------------ 118 (182)
T ss_dssp -----EECCHHHHHHHHHHHHTCC---CCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT------------
T ss_pred -----CCCCHHHHHHHHHhcccCC---CCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC------------
Confidence 1122345566666665322 234678999999999999643 356677777754310
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeC
Q 001219 688 SNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYY 752 (1121)
Q Consensus 688 ~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~ 752 (1121)
......+.+..+.+.+|.|..+.+. ..|...|..++..|||. |+..
T Consensus 119 ----------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~-~~~~ 164 (182)
T 1shu_X 119 ----------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQV-FPVK 164 (182)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGE-EESS
T ss_pred ----------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCce-EEcc
Confidence 1122355677788899888877776 56778899999998774 4443
No 13
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.27 E-value=1.3e-05 Score=83.73 Aligned_cols=173 Identities=10% Similarity=0.120 Sum_probs=110.8
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCEEEEE-ecCCCCCCceEeecCCccccccCC
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~Vhfy-nl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
+.-.+||||+|.+.-.. -++.+++.++..++.|.-. .+.+||||+|++..+.. .+ .+.
T Consensus 13 ~~divfvlD~SgSm~~~-~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l------------~~~------- 72 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEA-EFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGL------------KDR------- 72 (202)
T ss_dssp CEEEEEEEECBTTSCHH-HHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECT------------TCC-------
T ss_pred cccEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEec------------CCC-------
Confidence 45689999999975332 3678899999999988622 34899999999876532 11 110
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHH-HHh----cC-CeEEEEecCCCCcCccccccccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLA-LKS----TG-GKLLVFQSVLPSVGIGALSAREA 684 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~l-L~~----~G-GkIivF~sg~Pt~GpG~L~~re~ 684 (1121)
..++.+.+.|+.|... ....+.+|.||+.|..- ++. .. -.||++++|.++.+. .
T Consensus 73 ---------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~-----~-- 132 (202)
T 1ijb_A 73 ---------KRPSELRRIASQVKYA----GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM-----S-- 132 (202)
T ss_dssp ---------CCHHHHHHHHHTCCCC----CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG-----C--
T ss_pred ---------CCHHHHHHHHHhCcCC----CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc-----h--
Confidence 1244566677887642 12247899999999743 432 11 246777777653210 0
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccc-cceEEEEeCCCCCCCchhHH
Q 001219 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYPFSALSDPAKL 763 (1121)
Q Consensus 685 ~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~-TGG~v~~y~~F~~~~d~~~L 763 (1121)
+-..+.+.++.+.||.|-.+.+.. ..|...|..|+.. ++|.+|+..+|+. ..++
T Consensus 133 ---------------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~---L~~~ 187 (202)
T 1ijb_A 133 ---------------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDE---LEQQ 187 (202)
T ss_dssp ---------------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGG---HHHH
T ss_pred ---------------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHH---HHHH
Confidence 002345666777888777666654 4678888888874 6889998887743 3445
Q ss_pred HHHHHHh
Q 001219 764 YNDLRWN 770 (1121)
Q Consensus 764 ~~dL~r~ 770 (1121)
.++|.+.
T Consensus 188 ~~~i~~~ 194 (202)
T 1ijb_A 188 RDEIVSY 194 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 14
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3e-06 Score=93.18 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=103.2
Q ss_pred EEEEEEEcchhHHhh----hHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCC-EEEEEecCCCCCCceEeecCCcccccc
Q 001219 535 VFFFLIDVSMNALQT----GATAAACSAISQVISDLPE-GPRTMVGIATFDS-TIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1121)
Q Consensus 535 ~yvFvIDvS~~av~s----G~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs-~Vhfynl~~~~~~pqmlVvsDldd~fv 608 (1121)
+.|||||+|.+.... -.+++++++++..++.+.+ ++..+||||+|.. ..++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~v----------------------- 61 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV----------------------- 61 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEE-----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCccee-----------------------
Confidence 579999999987432 2577888888777764421 3346999999953 1111
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc---C--CeEEEEecCCCCcCcccccccc
Q 001219 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---G--GKLLVFQSVLPSVGIGALSARE 683 (1121)
Q Consensus 609 Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---G--GkIivF~sg~Pt~GpG~L~~re 683 (1121)
++++...+..|...|+.|. ....+.++.||+.|..+|++. + -|||+|+++.-+
T Consensus 62 ------l~plT~D~~~il~aL~~l~------~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~---------- 119 (268)
T 4b4t_W 62 ------LSTFTAEFGKILAGLHDTQ------IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPIS---------- 119 (268)
T ss_dssp ------EEEEESCHHHHHHHHTTCC------CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS----------
T ss_pred ------ccCCcchHHHHHHHhhhcC------cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCC----------
Confidence 1222234556777788774 245678999999999999863 2 379999887411
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccce
Q 001219 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG 746 (1121)
Q Consensus 684 ~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG 746 (1121)
. ..+-..++++++.+++|.||++.|..+..+-.-|..|+...+|
T Consensus 120 ----------~---------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 120 ----------D---------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp ----------S---------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred ----------C---------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 0 1123578999999999999999999876666777777666554
No 15
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.23 E-value=8.9e-06 Score=86.21 Aligned_cols=171 Identities=12% Similarity=0.106 Sum_probs=111.6
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEE-ecCCCCCCceEeecCCccccccCC
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfy-nl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
+.-++||||+|.+... ++.+++.++..++.|.. ..+.+||||+|++.++.. .+ .|.
T Consensus 22 ~~div~vlD~SgSM~~---~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l------------~~~------- 79 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP---WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NKY------- 79 (223)
T ss_dssp CEEEEEEEECSTTCCC---HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT------------TTC-------
T ss_pred cceEEEEEECCCChhh---HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec------------CCC-------
Confidence 4568999999997653 67888999999988852 245899999999876532 11 111
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHH-HHhc-C------CeEEEEecCCCCcCccccccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLA-LKST-G------GKLLVFQSVLPSVGIGALSAR 682 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~l-L~~~-G------GkIivF~sg~Pt~GpG~L~~r 682 (1121)
..++.+.+.|+.|... ....+.++.||+.|... ++.. | ..|+++++|.++.|.
T Consensus 80 ---------~~~~~~~~~i~~l~~~----gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~------ 140 (223)
T 2b2x_A 80 ---------SSTEEVLVAANKIVQR----GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY------ 140 (223)
T ss_dssp ---------CSHHHHHHHHTTCCCC----CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG------
T ss_pred ---------CCHHHHHHHHHhhhcc----CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------
Confidence 1122344455555321 12247899999999986 4321 1 237777777654321
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCcc--------Ccccccccccc-cceEEEEeCC
Q 001219 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYV--------DIASISVIPKT-TGGQVYYYYP 753 (1121)
Q Consensus 683 e~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~--------dlatL~~La~~-TGG~v~~y~~ 753 (1121)
-+.+.++++.+.||.|..+.+..+.- ....|..|+.. |||.+|+..+
T Consensus 141 ------------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~ 196 (223)
T 2b2x_A 141 ------------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSD 196 (223)
T ss_dssp ------------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESS
T ss_pred ------------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCC
Confidence 03456677888999888887765421 03788999998 9999999887
Q ss_pred CCCCCchhHHHHHHHHhc
Q 001219 754 FSALSDPAKLYNDLRWNI 771 (1121)
Q Consensus 754 F~~~~d~~~L~~dL~r~l 771 (1121)
++. ..++.++|.+.+
T Consensus 197 ~~~---L~~i~~~i~~~i 211 (223)
T 2b2x_A 197 ELA---LVTIVKALGERI 211 (223)
T ss_dssp TTG---GGGGHHHHHTTT
T ss_pred HHH---HHHHHHHHHHhh
Confidence 643 345566665544
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.23 E-value=1.1e-05 Score=83.00 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=107.1
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~ 611 (1121)
+.-.+||||+|.+.-.+ -++.+++.+++.++.+.. ..+.+||||+|++.++..- ++.+
T Consensus 5 ~~div~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~------ 63 (189)
T 1atz_A 5 PLDVILLLDGSSSFPAS-YFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDV--------------PWNV------ 63 (189)
T ss_dssp CEEEEEEEECSSSSCHH-HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE--------------CTTC------
T ss_pred ceeEEEEEeCCCCCChh-hHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEE--------------ecCC------
Confidence 45689999999976432 367888999999998863 3458999999988765310 0100
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc--C-----Ce-EEEEecCCCCcCcccccccc
Q 001219 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST--G-----GK-LLVFQSVLPSVGIGALSARE 683 (1121)
Q Consensus 612 ~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~--G-----Gk-IivF~sg~Pt~GpG~L~~re 683 (1121)
...++.+.+.|+.|.. ....+.+|.||..|...+... | -| |+++++|.++-
T Consensus 64 -------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~--------- 122 (189)
T 1atz_A 64 -------VPEKAHLLSLVDVMQR-----EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD--------- 122 (189)
T ss_dssp -------CCCHHHHHHHHHTCCC-----CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---------
T ss_pred -------CCCHHHHHHHHHhCcC-----CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---------
Confidence 0134556677777753 235689999999999988642 1 25 66777764320
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccce-EEEEeCCCC
Q 001219 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG-QVYYYYPFS 755 (1121)
Q Consensus 684 ~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG-~v~~y~~F~ 755 (1121)
+ ..+.+..+.+.||.|..+.+..+ .|...|..|+..++| .++...+|.
T Consensus 123 ~-----------------------~~~~~~~~~~~gi~v~~igvG~~-~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 123 S-----------------------VDAAADAARSNRVTVFPIGIGDR-YDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp C-----------------------CHHHHHHHHHTTEEEEEEEESSS-SCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred h-----------------------HHHHHHHHHHCCCEEEEEEcCCc-CCHHHHHHHHCCCcccCEEEecChh
Confidence 0 13556677788988887777653 677889999998875 577777663
No 17
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.21 E-value=1.5e-05 Score=87.75 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=109.7
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCEEEEE-ecCCCCCCceEeecCCccccccCC
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~Vhfy-nl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
+.-++||||.|.+.-...+++.++++++..++.|... ...+||||+|++.++.. .+... .
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~------------~------ 82 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSD------------A------ 82 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSS------------C------
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcccc------------C------
Confidence 4568999999998766667788999999999998752 35899999998766432 22111 0
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCC------eEEEEecCCCCcCccccccccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGG------KLLVFQSVLPSVGIGALSAREA 684 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GG------kIivF~sg~Pt~GpG~L~~re~ 684 (1121)
...++.|.+.|+.|.... .....+.+|.||+.|...|...++ .||++++|.++-+
T Consensus 83 --------~~~~~~l~~~i~~l~~~~--~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~--------- 143 (281)
T 4hqf_A 83 --------SKNKEKALIIIKSLLSTN--LPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSI--------- 143 (281)
T ss_dssp --------SSCHHHHHHHHHHHHHTT--GGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCH---------
T ss_pred --------ccCHHHHHHHHHHHhhcc--CCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCc---------
Confidence 001234444555554211 123467899999999888876543 3777777764310
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccc--cce--EEEEeCCCCC
Q 001219 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT--TGG--QVYYYYPFSA 756 (1121)
Q Consensus 685 ~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~--TGG--~v~~y~~F~~ 756 (1121)
.-..+.+.++.+.||.|-.+.+..+ +|...|..|+.. +|| .+|+..+|+.
T Consensus 144 ---------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 144 ---------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp ---------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred ---------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 1124566777788988777777654 677778888766 676 7888888753
No 18
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.21 E-value=5.7e-06 Score=86.85 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=107.1
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
.+.-++||||+|.+.-... ++.++++++..++.|.. +...+||||+|++.++..- ++.+
T Consensus 14 ~~~div~vlD~SgSM~~~~-~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~----- 73 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASN-FTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE----- 73 (223)
T ss_dssp -CEEEEEEEECSTTTCHHH-HHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE--------------CTTS-----
T ss_pred CceeEEEEEeCCCCCchHH-HHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee--------------cccc-----
Confidence 4567899999999764432 67777777777766543 2347999999988764321 1110
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcC-----------CeEEEEecCCCCcCcccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG-----------GKLLVFQSVLPSVGIGAL 679 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G-----------GkIivF~sg~Pt~GpG~L 679 (1121)
.....++.+.+.|+.|..... .....+.++.||..|...|...+ -.||++++|.++.|.-.
T Consensus 74 ------~~~~~~~~~~~~i~~l~~~~~-~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~- 145 (223)
T 1q0p_A 74 ------ADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP- 145 (223)
T ss_dssp ------GGGGCHHHHHHHHHTCCTTSC-SCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCT-
T ss_pred ------CCCCCHHHHHHHHHhcccccc-cCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCCh-
Confidence 112234567777888864311 12467889999999999997421 24788888887765200
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHH------HHHHHhcCeEEEEEEecCCccCcccccccccccce--EEEEe
Q 001219 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAM------AIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG--QVYYY 751 (1121)
Q Consensus 680 ~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~L------a~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG--~v~~y 751 (1121)
. ...+..+++ +..+.+.+|.|..+.+.. .+|...|..|+..||| .+|+.
T Consensus 146 ------~----------------~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~ 202 (223)
T 1q0p_A 146 ------I----------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKV 202 (223)
T ss_dssp ------H----------------HHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEET
T ss_pred ------H----------------HHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEc
Confidence 0 000111111 122345677776666653 4688899999999999 67766
Q ss_pred CCC
Q 001219 752 YPF 754 (1121)
Q Consensus 752 ~~F 754 (1121)
.++
T Consensus 203 ~~~ 205 (223)
T 1q0p_A 203 KDM 205 (223)
T ss_dssp TC-
T ss_pred CCH
Confidence 654
No 19
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.18 E-value=2.7e-05 Score=80.98 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=111.2
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~ 611 (1121)
+.-.+||||+|.+.-. ++.+++.+++.++.+.. ..+.+||||+|++..+..- ++.+
T Consensus 6 ~~div~vlD~SgSm~~---~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~--------------~l~~------ 62 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYP---WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVF--------------NLNT------ 62 (200)
T ss_dssp CEEEEEEEECCTTCCC---HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEE--------------CTTT------
T ss_pred cccEEEEEECCCCccc---HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEE--------------eCCC------
Confidence 4568999999997642 67889999999998862 2358999999998764310 1110
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHH-HHh-cCC------eEEEEecCCCCcCcccccccc
Q 001219 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLA-LKS-TGG------KLLVFQSVLPSVGIGALSARE 683 (1121)
Q Consensus 612 ~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~l-L~~-~GG------kIivF~sg~Pt~GpG~L~~re 683 (1121)
+ ..++.+.+.|+.|... ....+.+|.||+.|... ++. .|. .|+++++|.++.+.
T Consensus 63 --~-----~~~~~~~~~i~~l~~~----~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~------- 124 (200)
T 1v7p_C 63 --Y-----KTKEEMIVATSQTSQY----GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS------- 124 (200)
T ss_dssp --C-----SSHHHHHHHHHHCCCC----CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG-------
T ss_pred --c-----CCHHHHHHHHHhhhcc----CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc-------
Confidence 0 1233455566666421 11247899999999985 432 122 37778887654210
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecC----CccC----cccccccccccceE-EEEeCCC
Q 001219 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQ----TYVD----IASISVIPKTTGGQ-VYYYYPF 754 (1121)
Q Consensus 684 ~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~----~~~d----latL~~La~~TGG~-v~~y~~F 754 (1121)
-+++.+.++.+.||.|..+.+.. ..+| ..+|..++..|||. +|...+|
T Consensus 125 -----------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~ 181 (200)
T 1v7p_C 125 -----------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDE 181 (200)
T ss_dssp -----------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSS
T ss_pred -----------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCH
Confidence 02456777888999888877732 2344 46789999999986 5666665
Q ss_pred CCCCchhHHHHHHHHhc
Q 001219 755 SALSDPAKLYNDLRWNI 771 (1121)
Q Consensus 755 ~~~~d~~~L~~dL~r~l 771 (1121)
+ +..++.++|.+.+
T Consensus 182 ~---~l~~i~~~i~~~i 195 (200)
T 1v7p_C 182 A---ALLEKAGTLGEQI 195 (200)
T ss_dssp G---GGHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHhhh
Confidence 4 3455666666544
No 20
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.17 E-value=1.1e-05 Score=88.29 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=106.4
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~ 611 (1121)
+.-++||||.|.+.-...+.+.+++.++..++.|.. ....+||||+|++.++..- ++.+.
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~--------------~l~~~----- 78 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI--------------RLGSG----- 78 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE--------------CTTSH-----
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE--------------ecCCC-----
Confidence 456899999999876555545788899999998862 2358999999988654311 01100
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCC------eEEEEecCCCCcCcccccccccc
Q 001219 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGG------KLLVFQSVLPSVGIGALSAREAE 685 (1121)
Q Consensus 612 ~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GG------kIivF~sg~Pt~GpG~L~~re~~ 685 (1121)
....++.+...|+.|.... .....+.+|.||+.|..+++..|+ .||++++|.++-
T Consensus 79 ------~~~~~~~~~~~i~~l~~~~--~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d----------- 139 (266)
T 4hqo_A 79 ------QSIDKRQALSKVTELRKTY--TPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS----------- 139 (266)
T ss_dssp ------HHHCHHHHHHHHHHHHHHC--CCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC-----------
T ss_pred ------CccCHHHHHHHHHHhhhcc--CCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC-----------
Confidence 0112445566666664211 123467899999999999987543 467777776430
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCccccccccccc--ce--EEEEeCCC
Q 001219 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT--GG--QVYYYYPF 754 (1121)
Q Consensus 686 ~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~T--GG--~v~~y~~F 754 (1121)
..-..+.+.++.+.||.|-.+.+.. ..|-..|..|+... +| .+|++.+|
T Consensus 140 -------------------~~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 140 -------------------KYRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp -------------------HHHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred -------------------chHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 0113466777888898777777664 45666677888764 33 77777665
No 21
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.12 E-value=2.2e-05 Score=82.45 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=112.2
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCceEEEEEeCCEEEEE-ecCCCCCCceEeecCCccccccCC
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~Vhfy-nl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
+.-.+||||+|.+... ++.+++.+++.++.|. ...+.+||||+|++.++.. .+ .|.
T Consensus 7 ~~div~vlD~SgSm~~---~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l------------~~~------- 64 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP---WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NKY------- 64 (213)
T ss_dssp CEEEEEEEECCTTCCC---HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECT------------TTC-------
T ss_pred CccEEEEEECCCChhh---HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEec------------ccc-------
Confidence 4578999999997653 6788888899988875 2345899999998876532 11 111
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHH-Hh-cC------CeEEEEecCCCCcCccccccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TG------GKLLVFQSVLPSVGIGALSAR 682 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~~-~G------GkIivF~sg~Pt~GpG~L~~r 682 (1121)
..++.+.+.|+.|... ....+.+|.||+.|...+ +. .| ..|++++.|.++.|.
T Consensus 65 ---------~~~~~~~~~i~~l~~~----~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------ 125 (213)
T 1pt6_A 65 ---------SSTEEVLVAAKKIVQR----GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNH------ 125 (213)
T ss_dssp ---------SSHHHHHHHHHTCCCC----CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSH------
T ss_pred ---------CCHHHHHHHHHhccCC----CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------
Confidence 1223344455655421 122468999999999863 32 11 237778887654320
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCc----cC----cccccccccc-cceEEEEeCC
Q 001219 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY----VD----IASISVIPKT-TGGQVYYYYP 753 (1121)
Q Consensus 683 e~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~----~d----latL~~La~~-TGG~v~~y~~ 753 (1121)
-+.+.+.++.+.||.|..+.+.... ++ ...|..|+.. |||.+|+..+
T Consensus 126 ------------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~ 181 (213)
T 1pt6_A 126 ------------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSD 181 (213)
T ss_dssp ------------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESS
T ss_pred ------------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCC
Confidence 1345677788899888877776432 11 3678899988 7899999887
Q ss_pred CCCCCchhHHHHHHHHhccC
Q 001219 754 FSALSDPAKLYNDLRWNITR 773 (1121)
Q Consensus 754 F~~~~d~~~L~~dL~r~ltr 773 (1121)
++. ..++.++|.+.+.+
T Consensus 182 ~~~---l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 182 ELA---LVTIVKTLGERIFA 198 (213)
T ss_dssp GGG---GGGGHHHHHHHHTC
T ss_pred HHH---HHHHHHHHHHhhee
Confidence 643 34566666665543
No 22
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.09 E-value=3.4e-05 Score=91.61 Aligned_cols=180 Identities=12% Similarity=0.090 Sum_probs=113.4
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
.+.-++||||+|.+.-... ++.++++|+..++.|.. ..+.+||||+|++..+..- ++.+
T Consensus 8 ~~~divfvlD~SgSM~~~~-~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~----- 67 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSEND-FLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM--------------SVLN----- 67 (509)
T ss_dssp SEEEEEEEEECSTTSCHHH-HHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE--------------CTTS-----
T ss_pred CCeeEEEEEeCCCccchhh-HHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE--------------eccC-----
Confidence 4456899999999865433 57788888888887732 1348999999998665321 0100
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc----C----------CeEEEEecCCCCcCc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST----G----------GKLLVFQSVLPSVGI 676 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~----G----------GkIivF~sg~Pt~Gp 676 (1121)
.....++.+.+.|+.|..... .....+.++.||+.|.++|+.. + ..||++++|.++.|.
T Consensus 68 ------~~~~~~~~~~~~l~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~ 140 (509)
T 2odp_A 68 ------DNSRDMTEVISSLENANYKDH-ENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG 140 (509)
T ss_dssp ------GGGGCHHHHHHHHHTCCGGGG-TTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS
T ss_pred ------CCCCCHHHHHHHHHhcccccC-CCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC
Confidence 011235567777888854311 1136688999999999999541 1 247888888876541
Q ss_pred ccccccccccCCCCCCCccccccccchhHHHHHHHHHH-----HHhcCeEEEEEEecCCccCcccccccccccceE--EE
Q 001219 677 GALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIE-----FAEYQVCVDVFITTQTYVDIASISVIPKTTGGQ--VY 749 (1121)
Q Consensus 677 G~L~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~-----~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~--v~ 749 (1121)
.. . ..-+.+.+. ..+.+|.|..+.+..+..|...|..|+..++|+ ++
T Consensus 141 -~~--~-----------------------~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~ 194 (509)
T 2odp_A 141 -SP--K-----------------------TAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAF 194 (509)
T ss_dssp -CT--H-----------------------HHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEE
T ss_pred -Ch--h-----------------------HHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeE
Confidence 00 0 000111111 126677777777765558999999999999998 55
Q ss_pred EeCCCCCCCchhHHHHHHHHh
Q 001219 750 YYYPFSALSDPAKLYNDLRWN 770 (1121)
Q Consensus 750 ~y~~F~~~~d~~~L~~dL~r~ 770 (1121)
+..+ .+.|...+.+.
T Consensus 195 ~~~~------~~~l~~~~~~i 209 (509)
T 2odp_A 195 ILQD------TKALHQVFEHM 209 (509)
T ss_dssp EESS------HHHHHHHHHHH
T ss_pred EecC------HHHHHHHHHhh
Confidence 5554 34555555554
No 23
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.09 E-value=1.3e-05 Score=82.73 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=110.5
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCcc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~ 612 (1121)
+.-++||||+|.+.-.. -++.+++.++..++.|. ..+.+||||+|++.++..- ++.+.
T Consensus 5 ~~div~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~~~~--------------~l~~~------ 62 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPH-DFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFRIHF--------------TFKEF------ 62 (194)
T ss_dssp CEEEEEEEECCTTSCHH-HHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEEEEE--------------CHHHH------
T ss_pred CeeEEEEEeCCCCCCHH-HHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCceEEE--------------ecCCc------
Confidence 45689999999976433 35677888888888775 3358999999998764210 01000
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHH-Hh-cCC------eEEEEecCCCCcCccccccccc
Q 001219 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TGG------KLLVFQSVLPSVGIGALSAREA 684 (1121)
Q Consensus 613 ~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~~-~GG------kIivF~sg~Pt~GpG~L~~re~ 684 (1121)
..++.+...|+.|.. ....+.+|.||+.|...+ .. .|+ .|+++++|.++ | +
T Consensus 63 -------~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~--------d 121 (194)
T 1mf7_A 63 -------QNNPNPRSLVKPITQ-----LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-G--------D 121 (194)
T ss_dssp -------HHSCCHHHHHTTCCC-----CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-S--------C
T ss_pred -------CCHHHHHHHHHhCcC-----CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-C--------C
Confidence 112234555666642 234678999999999644 32 232 38888888775 1 1
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCc---cCccccccccccc-ceEEEEeCCCCCCCch
Q 001219 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTT-GGQVYYYYPFSALSDP 760 (1121)
Q Consensus 685 ~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~---~dlatL~~La~~T-GG~v~~y~~F~~~~d~ 760 (1121)
.. . +++.+.++.+.||.|..+.+..+. .+...|..++..+ +|.+|+..+|+. .
T Consensus 122 ~~-------~-------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~---l 178 (194)
T 1mf7_A 122 PL-------G-------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEA---L 178 (194)
T ss_dssp SS-------C-------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGG---G
T ss_pred ch-------h-------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHH---H
Confidence 00 0 122345667789888887776543 1368899999886 588888887643 3
Q ss_pred hHHHHHHHHhcc
Q 001219 761 AKLYNDLRWNIT 772 (1121)
Q Consensus 761 ~~L~~dL~r~lt 772 (1121)
.++.++|.+.+.
T Consensus 179 ~~~~~~i~~~ic 190 (194)
T 1mf7_A 179 KTIQNQLREKIF 190 (194)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455566665543
No 24
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.08 E-value=1.9e-05 Score=81.41 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEE-ecCCCCCCceEeecCCccccccCC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfy-nl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
.+.-++||||+|.+.-... ++.+++.++..++.+. ..+.+||||+|++.++.. .+. +.
T Consensus 8 ~~~div~vlD~SgSM~~~~-~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~~~~~~~~------------~~------- 66 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRN-FATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQTHFTFE------------EF------- 66 (198)
T ss_dssp CCEEEEEEEECCTTSCHHH-HHHHHHHHHHHHTTSC-TTTEEEEEEEESSSEEEEECHH------------HH-------
T ss_pred CCeeEEEEEECCCCCCHHH-HHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCccEEEecC------------cc-------
Confidence 3456899999998764432 4678888999998885 345899999998875432 110 00
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHH-HHHHhc-------CCeEEEEecCCCCcCccccccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF-LALKST-------GGKLLVFQSVLPSVGIGALSAR 682 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~-~lL~~~-------GGkIivF~sg~Pt~GpG~L~~r 682 (1121)
..++.+.+.|+.|.. ....+.++.||..|. .+++.. ...|+++++|.++.+.
T Consensus 67 ---------~~~~~~~~~i~~l~~-----~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------ 126 (198)
T 1n3y_A 67 ---------RRSSNPLSLLASVHQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------ 126 (198)
T ss_dssp ---------HHCSSGGGGGTTCCC-----CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS------
T ss_pred ---------CCHHHHHHHHhcCcC-----CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc------
Confidence 001112222333321 234678999999999 444431 2358888888765211
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCc---cCcccccccccccceEE-EEeCCCCCCC
Q 001219 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTTGGQV-YYYYPFSALS 758 (1121)
Q Consensus 683 e~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~---~dlatL~~La~~TGG~v-~~y~~F~~~~ 758 (1121)
. -+.+.+.++.+.||.|..+.+..+. .|...|..|+..|||.. |...++.
T Consensus 127 ---~--------------------~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~--- 180 (198)
T 1n3y_A 127 ---L--------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFD--- 180 (198)
T ss_dssp ---S--------------------CHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGG---
T ss_pred ---c--------------------cHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHH---
Confidence 0 0245567778899999888887654 36789999999999974 6666653
Q ss_pred chhHHHHHHHHhc
Q 001219 759 DPAKLYNDLRWNI 771 (1121)
Q Consensus 759 d~~~L~~dL~r~l 771 (1121)
+..++.++|.+.+
T Consensus 181 ~l~~~~~~i~~~i 193 (198)
T 1n3y_A 181 ALKDIQNQLKEKI 193 (198)
T ss_dssp GGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhe
Confidence 3345555665544
No 25
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.05 E-value=1.3e-07 Score=97.28 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=103.7
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcC-CCCCCceEEEEEeCC-EEEEEecCCCCCCceEeecCCccccccC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDL-PEGPRTMVGIATFDS-TIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs-~Vhfynl~~~~~~pqmlVvsDldd~fvP 609 (1121)
.+-.++||||+|.+... ..++.++++++..++.+ .. +.+||||+|++ ..+ ..+|
T Consensus 4 ~~~~vv~vlD~SgSM~~-~~~~~~k~~~~~~~~~~~~~--~~~v~lv~f~~~~~~---------------------~~~~ 59 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV-ARLSEAKGAVELLLGRAYAA--RDHVSLITFRGTAAQ---------------------VLLQ 59 (189)
T ss_dssp SCCEEEEEEECCTTSCC---CHHHHHHHHHHHHHSCTT--TSCCCEEEESBSCCC---------------------BCTT
T ss_pred CCeEEEEEEECCCCCCc-hHHHHHHHHHHHHHHHhcCC--CcEEEEEEECCCCce---------------------EecC
Confidence 34578999999998732 24678888888888777 43 37999999985 210 1122
Q ss_pred CcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcCccccccccc
Q 001219 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREA 684 (1121)
Q Consensus 610 l~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re~ 684 (1121)
. ...++.+...|+.|.. ...+.++.||..|..+++.. ...|++++.|.++.|...-..+++
T Consensus 60 ~--------~~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~ 125 (189)
T 2x31_A 60 P--------SRSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANREL 125 (189)
T ss_dssp T--------CSCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGG
T ss_pred C--------CCCHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccc
Confidence 1 1134456667777742 34678999999999999753 247888888999877531000000
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCCCchhHHH
Q 001219 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLY 764 (1121)
Q Consensus 685 ~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~~d~~~L~ 764 (1121)
... . .. +++..+.+.+|.|..+.+... |...|..|+..|||..++.++ .+.+.|.
T Consensus 126 ~~~---~--~~--------------~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~----~~~~~~~ 180 (189)
T 2x31_A 126 AGE---Q--AT--------------KVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR----ATAHKMA 180 (189)
T ss_dssp GTC---C--CE--------------EEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH----HHHHHHH
T ss_pred hhH---H--HH--------------HHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCC----cchHHHH
Confidence 000 0 00 001112234443333333322 778899999999998655432 2334555
Q ss_pred HHHHHhc
Q 001219 765 NDLRWNI 771 (1121)
Q Consensus 765 ~dL~r~l 771 (1121)
+.+.+.+
T Consensus 181 ~~~~~~~ 187 (189)
T 2x31_A 181 DVLGAAL 187 (189)
T ss_dssp HHHHHCC
T ss_pred HHHHHhh
Confidence 5555443
No 26
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.97 E-value=6.6e-05 Score=88.72 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=110.7
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCcc
Q 001219 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (1121)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~ 612 (1121)
.-++||||+|.+.-. ..++.+++.++..++.+.. ..+.+||||+|++..+..- ++.+
T Consensus 2 ~div~vlD~SgSM~~-~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~------- 59 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA-SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE------- 59 (497)
T ss_dssp EEEEEEEECSTTTCH-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTS-------
T ss_pred eeEEEEEECCCCcch-hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee--------------cccc-------
Confidence 357999999998643 2367778888887776543 2347999999987664321 1111
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh-----------cCCeEEEEecCCCCcCcccccc
Q 001219 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS-----------TGGKLLVFQSVLPSVGIGALSA 681 (1121)
Q Consensus 613 ~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~-----------~GGkIivF~sg~Pt~GpG~L~~ 681 (1121)
.....++.+.+.|+.|..... .....+.++.||+.|..+|.. ....|+++++|..+.|......
T Consensus 60 ----~~~~~~~~~~~~l~~l~~~~~-~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~ 134 (497)
T 1rrk_A 60 ----ADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITV 134 (497)
T ss_dssp ----GGGGCHHHHHHHHHHCCGGGS-CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHH
T ss_pred ----ccccCHHHHHHHHHhCcCccc-cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHH
Confidence 112345667778888864211 123568899999999999932 2246788999988775311000
Q ss_pred cccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccce--EEEEeCCCCCCCc
Q 001219 682 REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG--QVYYYYPFSALSD 759 (1121)
Q Consensus 682 re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG--~v~~y~~F~~~~d 759 (1121)
.+. .+ +.. .+.+.+..+.+.+|.|..+.+.. .+|...|..|+..+|| .+++..+|
T Consensus 135 ~~~-~~---------~~~-------~~~~~~~~~~~~~i~v~~igvG~-~~~~~~L~~iA~~~~g~~~~~~~~~~----- 191 (497)
T 1rrk_A 135 IDE-IR---------DLL-------YIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVCKVKDM----- 191 (497)
T ss_dssp HHH-HH---------HHT-------TCSSCC-CCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEEETTCH-----
T ss_pred HHH-HH---------HHh-------hhhcccccchhcCeeEEEecCCC-ccCHHHHHHHhcCCCCcceEEEeCCH-----
Confidence 000 00 000 00000111234477666665543 3788899999999999 76666543
Q ss_pred hhHHHHHHHHhc
Q 001219 760 PAKLYNDLRWNI 771 (1121)
Q Consensus 760 ~~~L~~dL~r~l 771 (1121)
+.|.+-+.+.+
T Consensus 192 -~~l~~~~~~~i 202 (497)
T 1rrk_A 192 -ECLEDVFYQMI 202 (497)
T ss_dssp -HHHHHHHHHHS
T ss_pred -HHHhhhhhhcc
Confidence 44555554433
No 27
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.94 E-value=3.5e-05 Score=80.69 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=94.9
Q ss_pred EEEEEEEcchhHHhhh----HHHHHHHHHHHHHhcC-CCCCCceEEEEEeCCE-EEEEecCCCCCCceEeecCCcccccc
Q 001219 535 VFFFLIDVSMNALQTG----ATAAACSAISQVISDL-PEGPRTMVGIATFDST-IHFYNLKRALQQPLMLIVPDVEDVYT 608 (1121)
Q Consensus 535 ~yvFvIDvS~~av~sG----~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs~-Vhfynl~~~~~~pqmlVvsDldd~fv 608 (1121)
..+|+||+|.+..+.. .++.++++++..+..+ ...++.+||||+|... -++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~----------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV----------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-----------------------
Confidence 5799999999876433 4677777766544321 1123369999999642 211
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcCcccccccc
Q 001219 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSARE 683 (1121)
Q Consensus 609 Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re 683 (1121)
++++...+..|...|+.|.. ..++++|.||..|..+|++. ..||++|+++.-+ +
T Consensus 61 ------~~plT~d~~~i~~~L~~l~~------~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~---------~ 119 (192)
T 2x5n_A 61 ------LSTLTRDYGKFLSAMHDLPV------RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIV---------E 119 (192)
T ss_dssp ------EEEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS---------S
T ss_pred ------ecCCCCCHHHHHHHHHcCCC------CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCC---------C
Confidence 12223345667777877542 24689999999999999873 3477888765200 0
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCccccccccccc
Q 001219 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT 744 (1121)
Q Consensus 684 ~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~T 744 (1121)
+ ..-..++++.+.+.||.|+++.++.+.-+-. |..+++.+
T Consensus 120 -----------~---------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 120 -----------D---------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp -----------C---------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred -----------C---------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 0 1124688999999999999999988765556 88887774
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.83 E-value=0.00023 Score=72.80 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=103.5
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCccc
Q 001219 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1121)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~~ 613 (1121)
.-.+||||.|.+.-.. -++.+++.++..++.|. ..+++||+|+|++.++..- ++.+
T Consensus 3 ~divfvlD~S~Sm~~~-~~~~~k~~~~~~~~~l~-~~~~rv~vv~fs~~~~~~~--------------~l~~-------- 58 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPD-EFQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYKTEF--------------DFSD-------- 58 (179)
T ss_dssp EEEEEEEECBTTCCHH-HHHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEEEEE--------------CHHH--------
T ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHHHHHhC-CCCeEEEEEEECCceeEEE--------------cCcc--------
Confidence 3579999999875432 25678888888888883 2347999999998764310 0100
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHH-HHHh-cCC------eEEEEecCCCCcCcccccccccc
Q 001219 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL-ALKS-TGG------KLLVFQSVLPSVGIGALSAREAE 685 (1121)
Q Consensus 614 lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~-lL~~-~GG------kIivF~sg~Pt~GpG~L~~re~~ 685 (1121)
..+++.+..+++.|..+ ...+.+|.||+.|.. ++.. .|+ .|+++++|.++.|.
T Consensus 59 -----~~~~~~~~~~~~~i~~~-----~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~--------- 119 (179)
T 1mjn_A 59 -----YVKRKDPDALLKHVKHM-----LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSG--------- 119 (179)
T ss_dssp -----HHHHCCHHHHHTTCCCC-----CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCS---------
T ss_pred -----cCCHHHHHHHHHhcccC-----CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCc---------
Confidence 01222456677777653 246789999999985 4442 233 47788888765431
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCcc---Ccccccccccccce-EEEEeCCCCCCCchh
Q 001219 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYV---DIASISVIPKTTGG-QVYYYYPFSALSDPA 761 (1121)
Q Consensus 686 ~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~---dlatL~~La~~TGG-~v~~y~~F~~~~d~~ 761 (1121)
. . ..+.||.|-.+.+....- |..+|..++..++| .+|+..+|+.- .
T Consensus 120 --------~-----~--------------~~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~L---~ 169 (179)
T 1mjn_A 120 --------N-----I--------------DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL---K 169 (179)
T ss_dssp --------C-----C--------------GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGS---C
T ss_pred --------c-----h--------------HHHCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHHH---H
Confidence 0 0 013567666666654322 24789999999987 57888887543 3
Q ss_pred HHHHHHHH
Q 001219 762 KLYNDLRW 769 (1121)
Q Consensus 762 ~L~~dL~r 769 (1121)
++.++|.+
T Consensus 170 ~i~~~i~~ 177 (179)
T 1mjn_A 170 DLCTELQK 177 (179)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHh
Confidence 45666554
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.73 E-value=2.4e-05 Score=97.16 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=108.7
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
.+.-++||||.|.+.-... ++.++++++..|+.|.. ..+.|||||+|++..+..- ++.+.
T Consensus 242 ~~~div~vlD~SgSM~~~~-~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~~---- 302 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIGASD-FTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSEA---- 302 (741)
T ss_dssp CEEEEEEEEECSTTTCHHH-HHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTSG----
T ss_pred CceeEEEEeccCCcccccc-hHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE--------------eeccc----
Confidence 4557899999999864333 56778888888887653 2348999999987553220 11100
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh-----cCC------eEEEEecCCCCcCcccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS-----TGG------KLLVFQSVLPSVGIGAL 679 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~-----~GG------kIivF~sg~Pt~GpG~L 679 (1121)
-...++.+.+.|+.|..... .....+.+|.||+.|.+.|.. .++ .||++++|.+|.|..-.
T Consensus 303 -------~~~~~~~~~~~i~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~ 374 (741)
T 3hrz_D 303 -------DSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI 374 (741)
T ss_dssp -------GGGCHHHHHHHHTTCCGGGG-SSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTH
T ss_pred -------CCcCHHHHHHHHHhcccccc-cCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCch
Confidence 01234556777787753211 134567899999999999821 112 48899999988774211
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceE--EEEeCCC
Q 001219 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQ--VYYYYPF 754 (1121)
Q Consensus 680 ~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~--v~~y~~F 754 (1121)
...+. .+ ......+.++++.+.+|.|..+.+.. .+|...|..|+..++|. +|+..+|
T Consensus 375 ~~~~~-i~----------------~~~~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~ 433 (741)
T 3hrz_D 375 TVIDE-IR----------------DLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDM 433 (741)
T ss_dssp HHHHH-HH----------------HHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSH
T ss_pred HHHHH-HH----------------HHhhcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCH
Confidence 10000 00 00001122234456677666665553 47888899999999996 6665554
No 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.69 E-value=5.4e-05 Score=91.78 Aligned_cols=147 Identities=10% Similarity=0.094 Sum_probs=86.0
Q ss_pred cEEEEEEEcchhHHhh-----hHHHHHHHHHHHHHhcC-CCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccc
Q 001219 534 AVFFFLIDVSMNALQT-----GATAAACSAISQVISDL-PEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1121)
Q Consensus 534 p~yvFvIDvS~~av~s-----G~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~f 607 (1121)
-..|||||+|.+..+. ..|+.++++|...++.. -..+..+||||+|++.-.--.+..........+
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~v-------- 79 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITV-------- 79 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEE--------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEE--------
Confidence 3689999999987542 36788888888888741 111236999999975421000100000001111
Q ss_pred cCCcccceeehH-HhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc------C-CeEEEEecCCCCcCcccc
Q 001219 608 TPLQSDIIVPVS-ECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST------G-GKLLVFQSVLPSVGIGAL 679 (1121)
Q Consensus 608 vPl~~~lLv~l~-e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~------G-GkIivF~sg~Pt~GpG~L 679 (1121)
+.++. ...+.|..|-+.|. ......++|.||.+|..+|++. + =+||+|++|--+.|.
T Consensus 80 -------l~~l~~~~~~~l~~l~~~l~-----~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~--- 144 (565)
T 1jey_B 80 -------HRHLMLPDFDLLEDIESKIQ-----PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK--- 144 (565)
T ss_dssp -------EEEEECCCHHHHHHHHTTCC-----CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC---
T ss_pred -------eecCCCCCHHHHHHHHhhcc-----CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCH---
Confidence 12221 12233333333242 1124678999999999999764 2 268888877533320
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEE-EEEecC
Q 001219 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVD-VFITTQ 729 (1121)
Q Consensus 680 ~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVD-lFl~s~ 729 (1121)
.-..++|+++.+.||.|+ ++.+..
T Consensus 145 --------------------------~~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 145 --------------------------SQLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp --------------------------TTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred --------------------------HHHHHHHHHHHhcCcEEEEEeccCC
Confidence 013678999999999999 665543
No 31
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.54 E-value=0.00048 Score=71.68 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=92.9
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
.+--.+||||.|.+.-... ++.+++.+++.++.|.. ....+||||+|++.++..- ++.+.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~-~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~--------------~l~~~---- 80 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEAD-FNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY--------------PFSEA---- 80 (199)
T ss_dssp CCCEEEEEEECCTTTCHHH-HHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEE--------------CTTSC----
T ss_pred CCcCEEEEEECCCCCCHHH-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEE--------------ecCCc----
Confidence 4456899999998764332 57788999999998842 2358999999998765321 11100
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHH-H-hcCC------eEEEEecCCCCcCccccccc
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-K-STGG------KLLVFQSVLPSVGIGALSAR 682 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~-~~GG------kIivF~sg~Pt~GpG~L~~r 682 (1121)
..++.+.+.|+.|... ....+.+|.||+.|...+ . ..|+ .|+++++|..+
T Consensus 81 ---------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~--------- 138 (199)
T 3zqk_A 81 ---------QSKGDILQRLREIRYQ----GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPAS--------- 138 (199)
T ss_dssp ---------CCHHHHHHHHHHCCCC----CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCS---------
T ss_pred ---------CCHHHHHHHHHhCcCC----CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCc---------
Confidence 1234556667777532 122478999999998743 2 2232 36666666421
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCC-ccCcccccccccccceEEEEeCCCC
Q 001219 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT-YVDIASISVIPKTTGGQVYYYYPFS 755 (1121)
Q Consensus 683 e~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~-~~dlatL~~La~~TGG~v~~y~~F~ 755 (1121)
++ . ..+ ..+| .+|.+.-. ..|...|..++. +|..|+..+|+
T Consensus 139 d~-v-----------~~~----------------~~~v--~v~~iGiG~~~~~~~L~~iA~--~~~~~~~~~~~ 180 (199)
T 3zqk_A 139 DE-I-----------KRL----------------PGDI--QVVPIGVGPNANVQELERIGW--PNAPILIQDFE 180 (199)
T ss_dssp SC-C-----------CCC----------------CTTE--EEEEEEESTTCCHHHHHHHHT--TSCCEEESCTT
T ss_pred hH-H-----------HHH----------------hCCC--EEEEEEcCCCCCHHHHHHHhC--CCceEEeCCHH
Confidence 10 0 000 1354 45555432 688889999987 56667777775
No 32
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.53 E-value=0.00043 Score=65.37 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=61.9
Q ss_pred ceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCCCCcH
Q 001219 975 PRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNP 1054 (1121)
Q Consensus 975 PrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~~dn~ 1054 (1121)
+|||.++.-. ...-..+.++.++|.++.+||||+|..||+|+|+..+..-..
T Consensus 3 ~rL~~v~g~~-----~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~----------------------- 54 (104)
T 1kcq_A 3 QRLFQVKGRR-----VVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERL----------------------- 54 (104)
T ss_dssp CEEEEEEESS-----SEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHH-----------------------
T ss_pred cEEEEEECCC-----cEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHH-----------------------
Confidence 6888887521 122335688999999999999999999999999998654332
Q ss_pred hHHHHHHHHHHHHH-ccCCcceEEEEecCCCcHHHHHhhc
Q 001219 1055 LSKKLNDVVNEIRR-QRCSYLRLKLCKKGDPSGMVFFSYL 1093 (1121)
Q Consensus 1055 ls~~l~~iI~~lr~-~r~~y~~l~ivrqg~~~e~~f~~~L 1093 (1121)
+...+.+.|+. .|.....+.++.+|...+ .|...|
T Consensus 55 ---~A~~~a~~i~~~er~~~~~i~~v~eG~E~~-~Fw~~L 90 (104)
T 1kcq_A 55 ---KATQVSKGIRDNERSGRARVHVSEEGTEPE-AMLQVL 90 (104)
T ss_dssp ---HHHHHHHHHHHHTSTTCSEEEEEETTCCCH-HHHHHH
T ss_pred ---HHHHHHHHHHhhccCCCCcEEEEeCCCCCH-HHHHHc
Confidence 44556666653 455567899999998554 344444
No 33
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.50 E-value=0.00081 Score=68.57 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=88.2
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~ 611 (1121)
+.-++||||+|.+.-.. -++.+++.|+..++.|... ...+||||+|++.++..- ++.+.
T Consensus 17 ~~divfvlD~SgSm~~~-~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~--------------~l~~~----- 76 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQ-NFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQW--------------DLQSP----- 76 (178)
T ss_dssp CEEEEEEEECCTTTCHH-HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE--------------CTTSG-----
T ss_pred CeeEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEE--------------eCCCC-----
Confidence 45689999999876332 3678888999999888632 358999999998764320 11110
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh--cC------CeEEEEecCCCCcCcccccccc
Q 001219 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TG------GKLLVFQSVLPSVGIGALSARE 683 (1121)
Q Consensus 612 ~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~--~G------GkIivF~sg~Pt~GpG~L~~re 683 (1121)
. .+.++.+.+.|+.|.. ....+.+|.||+.|...|.. .| ..|+++++|.++.+
T Consensus 77 ~------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~-------- 137 (178)
T 2xgg_A 77 N------AVDKQLAAHAVLDMPY-----KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSD-------- 137 (178)
T ss_dssp G------GSCHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHH--------
T ss_pred C------ccCHHHHHHHHHhCCC-----CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCC--------
Confidence 0 0134556667777752 23467899999999998632 12 35777777765321
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccc
Q 001219 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASI 737 (1121)
Q Consensus 684 ~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL 737 (1121)
.-+++.++++.+.||.|..+.+.. .+|-..|
T Consensus 138 ----------------------~~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 138 ----------------------FRTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp ----------------------HHHSHHHHHHHHTTCEEEEEECC---------
T ss_pred ----------------------ccHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 113456677788898877776654 3444433
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.21 E-value=0.0003 Score=91.38 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=103.4
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEE-ecCCCCCCceEeecCCccccccCCcc
Q 001219 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPLQS 612 (1121)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfy-nl~~~~~~pqmlVvsDldd~fvPl~~ 612 (1121)
.-.+||||.|.+.-.. -++.+++.+++.++.+.. .+++||||+|++.++.. .+.. ..|.+
T Consensus 131 ~DIvfvlD~SgSm~~~-~f~~~k~fv~~lv~~~~~-~~~rVglV~Fs~~~~~~~~lt~---------~~~~~-------- 191 (1095)
T 3k6s_A 131 QDIVFLIDGSGSISSR-NFATMMNFVRAVISQFQR-PSTQFSLMQFSNKFQTHFTFEE---------FRRSS-------- 191 (1095)
T ss_dssp EEEEEEEECCTTSCSH-HHHHHHHHHHHHHHSSCS-SSEEEEEEEESSSEEEEECSHH---------HHSCS--------
T ss_pred ccEEEEEcCCCCCChh-HHHHHHHHHHHHHHhccc-cccEEEEEEECCeEEEEecCcc---------cCCHH--------
Confidence 3579999999875432 367889999999999874 35899999998765432 1111 00111
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHH-H-hcCC------eEEEEecCCCCcCccccccccc
Q 001219 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-K-STGG------KLLVFQSVLPSVGIGALSAREA 684 (1121)
Q Consensus 613 ~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~-~~GG------kIivF~sg~Pt~GpG~L~~re~ 684 (1121)
.+...|+.|... ...+.+|.||+.|...+ . ..|+ .||++++|..+. +
T Consensus 192 -----------~l~~ai~~i~~~-----gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~---------d 246 (1095)
T 3k6s_A 192 -----------NPLSLLASVHQL-----QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEG---------D 246 (1095)
T ss_dssp -----------CGGGGTTTCCCC-----CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBS---------C
T ss_pred -----------HHHHHHhhhhcc-----cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCC---------C
Confidence 112234444432 34678999999998754 2 2333 366777765421 0
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCc---cCcccccccccccce-EEEEeCCCCC
Q 001219 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTTGG-QVYYYYPFSA 756 (1121)
Q Consensus 685 ~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~---~dlatL~~La~~TGG-~v~~y~~F~~ 756 (1121)
. .-+++.+.++.+.||.|-.+.+...+ +|..+|..|+..++| .+|...+|+.
T Consensus 247 ~--------------------~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 247 S--------------------LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp S--------------------SCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred c--------------------hhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 0 01356677788888877766666653 689999999999887 7777777754
No 35
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.20 E-value=0.00091 Score=64.26 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=61.7
Q ss_pred cceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCCCCc
Q 001219 974 YPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDN 1053 (1121)
Q Consensus 974 YPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~~dn 1053 (1121)
-++||.+..-. ...-..+.++.++|.++.+||||+|..||+|+|+..+..-.
T Consensus 12 ~~rL~~v~G~~-----~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek----------------------- 63 (114)
T 1svq_A 12 KPRLLHISGDK-----NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEK----------------------- 63 (114)
T ss_dssp CEEEEEEECTT-----SCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHH-----------------------
T ss_pred CcEEEEEECCC-----cEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHH-----------------------
Confidence 47888887421 11234578899999999999999999999999998764333
Q ss_pred HhHHHHHHHHHHHHHccCCcceEEEEecCCCcH-HHHHhhc
Q 001219 1054 PLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSG-MVFFSYL 1093 (1121)
Q Consensus 1054 ~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e-~~f~~~L 1093 (1121)
.+...+++.|...|.....+.++++|...| ..|...|
T Consensus 64 ---~~A~~~a~~i~~er~g~~~i~vv~eg~~~E~~~Fw~~L 101 (114)
T 1svq_A 64 ---NKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLL 101 (114)
T ss_dssp ---HHHHHHHHHHHHHHTTCSEEEECCCCTTCCCHHHHHHH
T ss_pred ---HHHHHHHHHhhhccCCCccEEEEeCCCcCCcHHHHHHc
Confidence 244555566655555456899999997322 3454444
No 36
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=97.09 E-value=0.0012 Score=76.72 Aligned_cols=107 Identities=11% Similarity=0.238 Sum_probs=63.0
Q ss_pred cccceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCCC
Q 001219 972 FVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQY 1051 (1121)
Q Consensus 972 ~lYPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~~ 1051 (1121)
-..||||.+.+-. |...+.+..+++.+.|+++.+||||+|..||||+|+.++.+-.+.
T Consensus 280 ~~~~rLf~~s~~~---G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~~------------------- 337 (398)
T 3fg7_A 280 VITPRLFECSNKT---GRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKA------------------- 337 (398)
T ss_dssp CCCCEEEEEECTT---SSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHHH-------------------
T ss_pred cccCeeEEEEcCC---CCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH-------------------
Confidence 3589999987632 211112223588999999999999999999999999987654432
Q ss_pred CcHhHHHHHHHHHHHHH---ccCCcceEEEEecCCCcHHHHHhhcc---cCCCCCCCCCHHHH
Q 001219 1052 DNPLSKKLNDVVNEIRR---QRCSYLRLKLCKKGDPSGMVFFSYLV---EDKIPTGGQSYVEF 1108 (1121)
Q Consensus 1052 dn~ls~~l~~iI~~lr~---~r~~y~~l~ivrqg~~~e~~f~~~LV---ED~~~~~~~SY~dF 1108 (1121)
.+....+.++. .|....++.+|.+|.-. ..|+.++- .++ .....||.+.
T Consensus 338 ------Al~~A~~yi~~~~~~r~~~tpi~~V~eG~Ep-~~Fk~~F~~Wd~~~-~~~~~~~~~~ 392 (398)
T 3fg7_A 338 ------AATTAQEYLKTHPSGRDPETPIIVVKQGHEP-PTFTGWFLAWDPFK-WSGIHVVPNL 392 (398)
T ss_dssp ------HHHHHHHHHHHSSSSCCTTCCEEEEETTCCC-HHHHTTSSCCCTTC-C---------
T ss_pred ------HHHHHHHHHHhCcccCCCCCCEEEEcCCCCC-HHHHHhhhcCChhh-hcccCCHHHh
Confidence 12222233443 35556788899998643 34665553 233 4567888774
No 37
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.77 E-value=0.037 Score=67.64 Aligned_cols=155 Identities=9% Similarity=0.190 Sum_probs=88.4
Q ss_pred EEEEEEEcchhHHhhh------HHHHHHHHHHHHHhcC-CCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccc
Q 001219 535 VFFFLIDVSMNALQTG------ATAAACSAISQVISDL-PEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1121)
Q Consensus 535 ~yvFvIDvS~~av~sG------~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~f 607 (1121)
..||+||||.+..+.. .|+.+++.|...+... -..++.+||||.|.+.-+ .+.+....+.++.+|+.+
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t----~n~l~~d~i~v~~~L~~~- 111 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKD----KNSVNFKNIYVLQELDNP- 111 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC----BSTTCCTTEEEEEEEECC-
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCC----CCcCCCCCeEEEecCCCC-
Confidence 5899999999875532 6788888888887741 111225999999976531 111111222333222211
Q ss_pred cCCcccceeehHHhHHHHHHHHh-----hcCccccCCCCCcchHHHHHHHHHHHHHhcC-----CeEEEEecCCCCcCcc
Q 001219 608 TPLQSDIIVPVSECRQHLELLLE-----SIPSMFQNNRTAESAFGAAVKAAFLALKSTG-----GKLLVFQSVLPSVGIG 677 (1121)
Q Consensus 608 vPl~~~lLv~l~e~~~~I~~lLd-----~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G-----GkIivF~sg~Pt~GpG 677 (1121)
+. +....|.++++ .+...+. ...++++|.||.+|..+++..+ =+|++||++--+.|
T Consensus 112 ---------~~-~~ik~l~~l~~~~~~~~~~~~~g--~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~-- 177 (609)
T 1jey_A 112 ---------GA-KRILELDQFKGQQGQKRFQDMMG--HGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHG-- 177 (609)
T ss_dssp ---------CH-HHHHHHHTTSHHHHHHHHHHHHC--CSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTT--
T ss_pred ---------CH-HHHHHHHHHhhcccchhhhhhcC--CCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCC--
Confidence 00 11111222211 0111111 1346789999999999998642 37888887643221
Q ss_pred cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCC
Q 001219 678 ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT 730 (1121)
Q Consensus 678 ~L~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~ 730 (1121)
.++ ....-...+|+.+.+.||.|.+|.++..
T Consensus 178 ----------------~~~------~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 178 ----------------NDS------AKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp ----------------TCH------HHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred ----------------Cch------HHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 100 0012346789999999999999988654
No 38
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=96.61 E-value=0.0045 Score=70.41 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=58.9
Q ss_pred cccceeEEeecCCCCCCCCCCCCc-cccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCC
Q 001219 972 FVYPRMVAIHDLDKGEDGSIIPPF-LPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQ 1050 (1121)
Q Consensus 972 ~lYPrLy~lh~l~~~d~~~~lP~~-l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~ 1050 (1121)
...||||.+.+-. +...+-+. -+++.+.|+++.+||||+|..||||+|+.++....+..+
T Consensus 226 ~~~~rLf~~s~~~---G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~A~---------------- 286 (344)
T 2fh1_A 226 AHPPRLFACSNKI---GRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEAL---------------- 286 (344)
T ss_dssp -CCCEEEEEECTT---SSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHH----------------
T ss_pred ccCCEEEEEEcCC---CCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHH----------------
Confidence 3679999987532 11111111 168889999999999999999999999998765443211
Q ss_pred CCcHhHHHHHHHHHHHHHccCCcceEEEEecCCCcHHHHHhhcc--cCCCCCCCCCHHHHHHH
Q 001219 1051 YDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLV--EDKIPTGGQSYVEFLIN 1111 (1121)
Q Consensus 1051 ~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e~~f~~~LV--ED~~~~~~~SY~dFL~~ 1111 (1121)
+...+.++.....|....++.+|.+|.-. ..|++++- +|. .-...+|.+.+..
T Consensus 287 ------~~A~~y~~~~~~~r~~~t~i~~V~eG~Ep-~~Fk~~F~~W~~~-~~~~~~~~~~~~~ 341 (344)
T 2fh1_A 287 ------TSAKRYIETDPANRDRRTPITVVKQGFEP-PSFVGWFLGWDDD-YWSVDPLDRAMAE 341 (344)
T ss_dssp ------HHHHHHHHTC-------CCEEEEETTCCC-HHHHTTSSSCCTT-CC-----------
T ss_pred ------HHHHHHHHhCccCCCCCCcEEEEcCCCCC-HHHHHHHhhcChh-hcCCChHHHHHHH
Confidence 11222222221245556789999998543 34555554 233 2222466665544
No 39
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=96.27 E-value=0.0079 Score=76.39 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=82.4
Q ss_pred CCCcEEEEEEEcchhHHhhh-----HHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEE---EecCCCCCCceEeecCC
Q 001219 531 PMPAVFFFLIDVSMNALQTG-----ATAAACSAISQVISDLPEGPRTMVGIATFDSTIHF---YNLKRALQQPLMLIVPD 602 (1121)
Q Consensus 531 p~pp~yvFvIDvS~~av~sG-----~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhf---ynl~~~~~~pqmlVvsD 602 (1121)
..+--.|||||+|.++.... .++.++++++..|+.|....+.|||||+|++.+.. ..+..........+..|
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~ 301 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLND 301 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECC
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccccc
Confidence 45668999999999875543 36677888888888765434589999999986532 00000000000000000
Q ss_pred -----ccc-cccCCcccc-eeehHHhHHHHHHHHhhcCccccC-------CCCCcchHHHHHHHHHHHHHh-c--C--Ce
Q 001219 603 -----VED-VYTPLQSDI-IVPVSECRQHLELLLESIPSMFQN-------NRTAESAFGAAVKAAFLALKS-T--G--GK 663 (1121)
Q Consensus 603 -----ldd-~fvPl~~~l-Lv~l~e~~~~I~~lLd~Lp~~f~~-------~~~~~~~lG~AL~aA~~lL~~-~--G--Gk 663 (1121)
.+. .|.-...++ .+++...++.|..|.+.|+..-.. .....+.++.||..|..+|+. . + ..
T Consensus 302 ~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kv 381 (893)
T 2ww8_A 302 SLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKV 381 (893)
T ss_dssp CTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEE
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeE
Confidence 000 010000111 234444455555555555432110 113568899999999999974 1 2 25
Q ss_pred EEEEecCCCCcCc
Q 001219 664 LLVFQSVLPSVGI 676 (1121)
Q Consensus 664 IivF~sg~Pt~Gp 676 (1121)
||++++|.++.+.
T Consensus 382 IILLTDG~pt~~~ 394 (893)
T 2ww8_A 382 IFHITDGVPTMSY 394 (893)
T ss_dssp EEEEESSCCSEEC
T ss_pred EEEEcCCCCCccc
Confidence 7888899999754
No 40
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=96.25 E-value=0.0049 Score=70.90 Aligned_cols=95 Identities=14% Similarity=0.237 Sum_probs=55.9
Q ss_pred ccceeEEeecCCCCCCCCCCCCc-cccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCCC
Q 001219 973 VYPRMVAIHDLDKGEDGSIIPPF-LPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQY 1051 (1121)
Q Consensus 973 lYPrLy~lh~l~~~d~~~~lP~~-l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~~ 1051 (1121)
.-||||.+.+-. |...+-+. -+++.+.|+++.+||||+|..||||+|+.++....+..+.
T Consensus 268 ~~~rLf~~s~~~---G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~---------------- 328 (371)
T 3fg6_A 268 HPPRLYGCSNKT---GRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK---------------- 328 (371)
T ss_dssp SCCEEEEEECTT---SSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHH----------------
T ss_pred cCcEEEEEEcCC---CcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHH----------------
Confidence 458999887532 11111111 2588899999999999999999999999998766553321
Q ss_pred CcHhHHHHHHHHHHHHHccCCcceEEEEecCCCcHHHHHhhc
Q 001219 1052 DNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYL 1093 (1121)
Q Consensus 1052 dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e~~f~~~L 1093 (1121)
...+.|+.....|....++.+|.+|... ..|++++
T Consensus 329 ------~A~~yi~~~~~~r~~~t~i~~v~eG~Ep-~~Fk~~F 363 (371)
T 3fg6_A 329 ------SAKMYLETDPSGRDKRTPIVIIKQGHEP-PTFTGWF 363 (371)
T ss_dssp ------HHTTCC----------CCEEEEETTCCC-HHHHTTS
T ss_pred ------HHHHHHHhCccCCCCCCCEEEecCCCCC-HHHHhhh
Confidence 1111122222235556789999998643 3455544
No 41
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.24 E-value=0.39 Score=56.51 Aligned_cols=270 Identities=14% Similarity=0.214 Sum_probs=133.2
Q ss_pred CcEEEEEEEcchhHHhhhHHHHH---HHHHHHHHhcCCCCCCceEEEEEe-CCEEE-EEecCCC--CCCceEeecCCccc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAA---CSAISQVISDLPEGPRTMVGIATF-DSTIH-FYNLKRA--LQQPLMLIVPDVED 605 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v---~~aI~~~L~~Lp~~~rt~VGiITF-Ds~Vh-fynl~~~--~~~pqmlVvsDldd 605 (1121)
|-=.+||+|+|.+... .++.+ ...|.+.|..+-. +.||||..| |+.|. |++.... +..|- .+.+.
T Consensus 111 pvDLy~LmDlS~SM~d--dl~~lk~lg~~L~~~l~~~t~--~~riGfgsFvDk~v~P~~~~~p~~~l~nPc----~~~~~ 182 (472)
T 3t3p_B 111 PVDIYYLMDLSYSMKD--DLWSIQNLGTKLATQMRKLTS--NLRIGFGAFVDKPVSPYMYISPPEALENPC----YDMKT 182 (472)
T ss_dssp CEEEEEEEECSGGGHH--HHHHTTTHHHHHHHHHTTTCS--CEEEEEEEECCCSSTTTSCCCSHHHHHCTT----TTTTS
T ss_pred CceEEEEEccCcchHH--HHHHHHHHHHHHHHHHHhcCc--CcEEEEEEeeccccCccccCChhhhhcCCC----ccccc
Confidence 4568999999998744 24444 4444445554433 489999999 55442 1110000 00010 00000
Q ss_pred ccc-CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHH--HHHH--hcCCeEEEEecCCCC--cCccc
Q 001219 606 VYT-PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK--STGGKLLVFQSVLPS--VGIGA 678 (1121)
Q Consensus 606 ~fv-Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~--~lL~--~~GGkIivF~sg~Pt--~GpG~ 678 (1121)
.-. ++.-...+++.+..+.+.+.++.+. ...+...++..|.+-+++|+ +-+. ...-||+||.+-.+- .|-|+
T Consensus 183 ~c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgk 261 (472)
T 3t3p_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGR 261 (472)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHHHCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGG
T ss_pred CCCCCcceeEeeccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCcc
Confidence 000 1111224677777777787887763 23455677887877777765 2332 123689999988877 47777
Q ss_pred ccccccccCCCCCCCccccccccchhHH----HHHHHHHHHHhcCeEEEEEEecCCccCcccccccccc-cceEEEEeCC
Q 001219 679 LSAREAEGRSNISSGEKETHKLLQPADK----TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYP 753 (1121)
Q Consensus 679 L~~re~~~r~~~~~gt~~e~~ll~pa~~----FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~-TGG~v~~y~~ 753 (1121)
|...-........+..+. ++..+.. -..+|+..+.+++|.+ ||+.+....++. ..|+++ .|+.+-....
T Consensus 262 L~GIv~pnDg~CHL~~~~---~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~L~~ 335 (472)
T 3t3p_B 262 LAGIVQPNDGQCHVGSDN---HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGTTVGVLSM 335 (472)
T ss_dssp GGTCCCCCCCCCCBCTTC---BBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHHH--HHHHHTSTTCEEEECCT
T ss_pred ccceecCCCCceEECCCC---cccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhHH--HHHHHhCCCceeeeccc
Confidence 654321110011111110 1111111 2567777788888754 777776544431 222222 3444544443
Q ss_pred CCCCCchhHHHHHHHHhccCCccccceEEEEe-CCCcEEEeee--CccccCCCCceeecCCCCCCeEEEEEEec
Q 001219 754 FSALSDPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQEYH--GNFCKRIPTDIDLPAIDCNKAIMVTLKHD 824 (1121)
Q Consensus 754 F~~~~d~~~L~~dL~r~ltr~~g~~a~mrVR~-S~GL~V~~~~--G~f~~r~~~~~~lp~id~dtSia~el~~d 824 (1121)
.+...-+|..+-++.|.. ++.|+... .++|+|+-.- ++... ....-...++.-...+.|.+++.
T Consensus 336 --dSsNiv~LI~~aY~~i~s----~V~l~~~~~p~~l~v~y~s~C~~~~~-~~~~~~C~~v~ig~~v~F~v~v~ 402 (472)
T 3t3p_B 336 --DSSNVLQLIVDAYGKIRS----KVELEVRDLPEELSLSFNATCLNNEV-IPGLKSCMGLKIGDTVSFSIEAK 402 (472)
T ss_dssp --TSTTHHHHHHHHHHHHTT----CEEEEEESCCTTEEEEEEEEETTTEE-EETCCEECSCCTTCEEEEEEEEE
T ss_pred --cchhHHHHHHHHHHHhhe----EEEEeeCCCCCcEEEEEEeECCCCCc-cCCCccCCCcccCCEEEEEEEEE
Confidence 223445566565555433 33444332 4566665221 11000 01112344555566666666655
No 42
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=96.12 E-value=0.015 Score=66.10 Aligned_cols=84 Identities=12% Similarity=0.225 Sum_probs=56.4
Q ss_pred ccceeEEeecCCCCCCCCCCCCcc----ccccccccCCcEEEEEcC--ceEEEEecCCCCHHHHHHhhCCCCCCCCCccc
Q 001219 973 VYPRMVAIHDLDKGEDGSIIPPFL----PLSSEHVSDEGIYLLENG--EDALIYIGSSVDSSILHQLFGISSVDEVPTQF 1046 (1121)
Q Consensus 973 lYPrLy~lh~l~~~d~~~~lP~~l----~LS~e~L~~dgiYLLD~G--~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~ 1046 (1121)
..|+||.+.+-. +.. ....+ +++.+.|+++.+||||+| ..||||+|+.++.+-.+..+
T Consensus 246 ~~~rLy~vs~~~---G~~-~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~~A~------------ 309 (347)
T 1j72_A 246 QAAALYKVSDAT---GQM-NLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAAL------------ 309 (347)
T ss_dssp CCCEEEEEECTT---SSC-EEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHH------------
T ss_pred cCCEEEEEECCC---CCE-EEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHHHHH------------
Confidence 478999997532 111 11123 789999999999999999 99999999998765443211
Q ss_pred ccCCCCcHhHHHHHHHHHHHHHccCCcceEEEEecCCC
Q 001219 1047 VLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDP 1084 (1121)
Q Consensus 1047 ~lp~~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~ 1084 (1121)
+..++.++. ..|....++.+|.+|..
T Consensus 310 ----------~~A~~y~~~--~~rp~~~~i~~v~eG~E 335 (347)
T 1j72_A 310 ----------QVAEGFISR--MQYAPNTQVEILPQGRE 335 (347)
T ss_dssp ----------HHHHHHHHH--HTCCTTCEEEEEETTCC
T ss_pred ----------HHHHHHHHh--cCCCCCCeEEEEcCCCC
Confidence 111222222 24556788999999863
No 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.98 E-value=0.2 Score=61.94 Aligned_cols=263 Identities=15% Similarity=0.225 Sum_probs=130.9
Q ss_pred CcEEEEEEEcchhHHhhhHHHHH---HHHHHHHHhcCCCCCCceEEEEEe-CCEEEEEecCCCCCCceEeecCCc-cccc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAA---CSAISQVISDLPEGPRTMVGIATF-DSTIHFYNLKRALQQPLMLIVPDV-EDVY 607 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v---~~aI~~~L~~Lp~~~rt~VGiITF-Ds~Vhfynl~~~~~~pqmlVvsDl-dd~f 607 (1121)
|-=.+||||+|.++.. .++.+ ...|.+.|..+-++ .||||..| |+.+.=| ....| .++ ..+.
T Consensus 111 pvDly~LmD~S~SM~d--di~~lk~l~~~l~~~l~~~t~~--~r~Gfgsf~Dk~~~P~----~~~~p-----~~~~~~pc 177 (690)
T 3fcs_B 111 PVDIYYLMDLSYSMKD--DLWSIQNLGTKLATQMRKLTSN--LRIGFGAFVDKPVSPY----MYISP-----PEALENPC 177 (690)
T ss_dssp CEEEEEEEECSGGGHH--HHHHTTTTTHHHHHHHHHHCSC--EEEEEEEECCCSSTTT----SCCCS-----TTTTTCTT
T ss_pred CccEEEEecCCcchHH--HHHHHHHHHHHHHHHHHhhCcC--ceEEeEEeeccccCCc----cccCh-----hhhccCCC
Confidence 4568999999998743 23333 33444444444444 89999999 4443100 00001 111 1110
Q ss_pred -------c-CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHH--HHHH--hcCCeEEEEecCCCCc-
Q 001219 608 -------T-PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK--STGGKLLVFQSVLPSV- 674 (1121)
Q Consensus 608 -------v-Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~--~lL~--~~GGkIivF~sg~Pt~- 674 (1121)
. |..-...+++.+..+.+.+.|+.+. ...+...+|..|-+.+++|+ .-+. ...-|||||.+-.+-.
T Consensus 178 ~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~-isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 178 YDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (690)
T ss_dssp SSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred cCCCCCCCCCccceeecccCCCHHHHHHHhhcee-ccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCcccc
Confidence 0 1111223677777777777777764 23444667777766666663 3332 1235899999888874
Q ss_pred -Ccccccccccc--cCCCCCCCccccccccchhHH----HHHHHHHHHHhcCeEEEEEEecCCccCcccccccc-cccce
Q 001219 675 -GIGALSAREAE--GRSNISSGEKETHKLLQPADK----TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIP-KTTGG 746 (1121)
Q Consensus 675 -GpG~L~~re~~--~r~~~~~gt~~e~~ll~pa~~----FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La-~~TGG 746 (1121)
|-|+|...-.. .+=| +..+. ++..+.. -..+|++++.+++|.+ ||+......++. ..|+ ..+|+
T Consensus 257 agDg~l~gi~~pnd~~ch--l~~~~---~y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~~y--~~l~~~i~~s 328 (690)
T 3fcs_B 257 ALDGRLAGIVQPNDGQCH--VGSDN---HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGT 328 (690)
T ss_dssp TTGGGGGTCCSCCCCCCC--BCTTC---BBGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHHHH--HHHHHHSTTC
T ss_pred CCCccccceecCCCccee--ecCCC---ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchhhH--HHHHhhcCCc
Confidence 66665432211 1111 11110 1111111 1467778888899844 666665544432 2233 23456
Q ss_pred EEEEeCCCCCCCchhHHHHHHHHhccCCccccceEEEEe-CCCcEEEeeeCccccCC--CCceeecCCCCCCeEEEEEEe
Q 001219 747 QVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQEYHGNFCKRI--PTDIDLPAIDCNKAIMVTLKH 823 (1121)
Q Consensus 747 ~v~~y~~F~~~~d~~~L~~dL~r~ltr~~g~~a~mrVR~-S~GL~V~~~~G~f~~r~--~~~~~lp~id~dtSia~el~~ 823 (1121)
.+-.... .+.+..+|..+-++.|. -.++|++.. .++|+|+-.- ....+. ...-.-.+|.....+.|.+++
T Consensus 329 ~v~~l~~--dSsni~~li~~~y~~i~----s~v~l~~~~~p~~~~v~~~s-~C~~~~~~~~~~~C~~v~~g~~v~F~v~v 401 (690)
T 3fcs_B 329 TVGVLSM--DSSNVLQLIVDAYGKIR----SKVELEVRDLPEELSLSFNA-TCLNNEVIPGLKSCMGLKIGDTVSFSIEA 401 (690)
T ss_dssp EEEEECT--TCTTHHHHHHHHHHHHT----TCEEEEEESCCTTEEEEEEE-ECSTTCEEETCCEECSCCTTCEEEEEEEE
T ss_pred eeeeecc--ccHHHHHHHHHHHHhhh----cceeeeccCCCCcceEEEEe-ecCCCCcccCCCcccccccCCeEEEEEEE
Confidence 6666654 22344455555554443 233444433 4566665321 110000 001133445556666666665
Q ss_pred c
Q 001219 824 D 824 (1121)
Q Consensus 824 d 824 (1121)
.
T Consensus 402 ~ 402 (690)
T 3fcs_B 402 K 402 (690)
T ss_dssp E
T ss_pred E
Confidence 4
No 44
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=95.79 E-value=0.74 Score=53.87 Aligned_cols=271 Identities=13% Similarity=0.214 Sum_probs=133.8
Q ss_pred CcEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCceEEEEEe-CCEEEEE-ecC-CCCCCceEeecCCcccccc
Q 001219 533 PAVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATF-DSTIHFY-NLK-RALQQPLMLIVPDVEDVYT 608 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~s-G~l~~v~~aI~~~L~~Lp~~~rt~VGiITF-Ds~Vhfy-nl~-~~~~~pqmlVvsDldd~fv 608 (1121)
|-=.+|++|+|.+.... .-|+.+...|.+.|..+-. +.||||..| |+.|.=| +.. ..+..|- .+...---
T Consensus 122 PVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~--~~riGfGsFvDK~v~P~~~t~p~~~~nPC----~~~~~c~~ 195 (454)
T 3vi3_B 122 PIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITS--DFRIGFGSFVEKTVMPYISTTPAKLRNPC----TSEQNCTT 195 (454)
T ss_dssp CEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCS--SEEEEEEEECCCSSTTTSCCSTTTTTCCS----CSSSCCCC
T ss_pred ceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEEeccccCCcccCChHHhcCCC----cCccCCCC
Confidence 44678999999987442 1133444444455555444 389999999 5544211 110 0011110 00000000
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHH--HHH-hcCCeEEEEecCCCC--cCcccccccc
Q 001219 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL--ALK-STGGKLLVFQSVLPS--VGIGALSARE 683 (1121)
Q Consensus 609 Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~--lL~-~~GGkIivF~sg~Pt--~GpG~L~~re 683 (1121)
+..-...+++.+..+.+++.++.+. ...+...++..+-+-+++|+. -+. ...-||+||.+-.+- .|-|+|...-
T Consensus 196 ~f~fr~~l~LT~d~~~F~~~V~~~~-isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv 274 (454)
T 3vi3_B 196 PFSYKNVLSLTNKGEVFNELVGKQR-ISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIV 274 (454)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCC
T ss_pred CcceeeeeecCCCHHHHHHHHhhcc-ccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCcccccee
Confidence 1111225677777778888888753 334556778778777777652 221 014689999988877 4778765432
Q ss_pred cccCCCCCCCccccccccchhH----HHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccc-cceEEEEeCCCCCCC
Q 001219 684 AEGRSNISSGEKETHKLLQPAD----KTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYPFSALS 758 (1121)
Q Consensus 684 ~~~r~~~~~gt~~e~~ll~pa~----~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~-TGG~v~~y~~F~~~~ 758 (1121)
.......++. +. ++..+. .-.-+|++.+.+++|-+ ||+.+....++. ..|+++ .|+.+-.... .+.
T Consensus 275 ~PNDg~CHL~-~~---~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~--dSs 345 (454)
T 3vi3_B 275 LPNDGQCHLE-NN---MYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY--KELKNLIPKSAVGTLSA--NSS 345 (454)
T ss_dssp SCCCCCCCEE-TT---EECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH--HHHHHHSTTEEEEEECT--TCT
T ss_pred cCCCCccEeC-CC---cccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH--HHHHHhCCCceeeEccc--cch
Confidence 2111011111 11 111111 12577888888998865 777776644432 222222 2344444443 122
Q ss_pred chhHHHHHHHHhccCCccccceEEEEe-CCCcEEEeeeCccccCC--CCc--eeecCCCCCCeEEEEEEec
Q 001219 759 DPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQEYHGNFCKRI--PTD--IDLPAIDCNKAIMVTLKHD 824 (1121)
Q Consensus 759 d~~~L~~dL~r~ltr~~g~~a~mrVR~-S~GL~V~~~~G~f~~r~--~~~--~~lp~id~dtSia~el~~d 824 (1121)
..-+|..+-++.|.. ++.|+... .+||+|+-.- .+..+. ... -...++.-...+.|.+++.
T Consensus 346 Niv~LI~~aY~~i~S----~V~l~~~~~p~~l~v~y~s-~C~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~ 411 (454)
T 3vi3_B 346 NVIQLIIDAYNSLSS----EVILENGKLSEGVTISYKS-YCKNGVNGTGENGRKCSNISIGDEVQFEISIT 411 (454)
T ss_dssp THHHHHHHHHHHHHT----CEEEEECCCCTTEEEEEEE-ECGGGCEEEGGGGGEECCCCTTCEEEEEEEEE
T ss_pred hHHHHHHHHHHHhhe----EEEEecCCCCCceEEEEEe-ecCCCCccCCccCCCCCCccCCCEEEEEEEEE
Confidence 344555555544432 33333322 4466654321 111110 000 2345566666777766655
No 45
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=95.58 E-value=0.023 Score=70.89 Aligned_cols=96 Identities=14% Similarity=0.235 Sum_probs=61.0
Q ss_pred cccceeEEeecCCCCCCCCCCCCcc-ccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCC
Q 001219 972 FVYPRMVAIHDLDKGEDGSIIPPFL-PLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQ 1050 (1121)
Q Consensus 972 ~lYPrLy~lh~l~~~d~~~~lP~~l-~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~ 1050 (1121)
...||||.+.+-. |...+.+.. +++.+.|.++.|||||+|..||||+|+.++....+..
T Consensus 611 ~~~~rLf~~s~~~---G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er~~a----------------- 670 (729)
T 1d0n_A 611 AHPPRLFACSNKI---GRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEA----------------- 670 (729)
T ss_dssp HSCCEEEEEECTT---TCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHHSSH-----------------
T ss_pred ccCCeEEEEEcCC---CcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHH-----------------
Confidence 5689999998532 211111122 5788999999999999999999999999876543211
Q ss_pred CCcHhHHHHHHHHHHHHHccCCcceEEEEecCCCcHHHHHhhc
Q 001219 1051 YDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYL 1093 (1121)
Q Consensus 1051 ~dn~ls~~l~~iI~~lr~~r~~y~~l~ivrqg~~~e~~f~~~L 1093 (1121)
+ +...+.++.....|....++.+|.+|.-. ..|.+++
T Consensus 671 ----l-~~A~~Y~~~~~~~r~~~~pi~~V~~G~Ep-~~F~~~F 707 (729)
T 1d0n_A 671 ----L-TSAKRYIDTDPAHRDRRTPITVVKQGFEP-PSFVGWF 707 (729)
T ss_dssp ----H-HHHHHHHHHCTTCCCTTCCEEEEETTCCC-HHHHTTC
T ss_pred ----H-HHHHHHHHhCcccCCCCCcEEEEeCCCCC-HHHHhhh
Confidence 1 11122222222356566889999998643 2355444
No 46
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.53 E-value=0.45 Score=56.27 Aligned_cols=271 Identities=15% Similarity=0.175 Sum_probs=132.9
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHH---HHHHHHHhcCCCCCCceEEEEEe-CCEEEEEecCCCCCCceEee--cCCcccc
Q 001219 533 PAVFFFLIDVSMNALQTGATAAAC---SAISQVISDLPEGPRTMVGIATF-DSTIHFYNLKRALQQPLMLI--VPDVEDV 606 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~---~aI~~~L~~Lp~~~rt~VGiITF-Ds~Vhfynl~~~~~~pqmlV--vsDldd~ 606 (1121)
|-=.+||+|+|.+... .++.++ ..|.+.|..+-. +.||||.+| |+.|.=|. ...|..+. -.+.++.
T Consensus 132 PVDLyyLmDlS~SM~d--dl~~lk~lg~~L~~~l~~~t~--~~RiGfGsFvDK~v~P~~----~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 132 PVDLYYLMDLSYSMKD--DLERVRQLGHALLVRLQEVTH--SVRIGFGSFVDKTVLPFV----STVPSKLRHPCPTRLER 203 (503)
T ss_dssp CEEEEEEEECSGGGHH--HHHHHHHSSHHHHHHHTTTCS--CEEEEEEEECCCSSTTTS----CCCHHHHHCCSSCSSSC
T ss_pred ceeEEEEEecCcchhh--HHHHHHHHHHHHHHHHHhhCc--CcEEeeeeecccccCCcc----cCCHHHhcCCCcCCCCC
Confidence 4468999999998744 244444 444445554433 489999999 55441110 00010000 0000000
Q ss_pred cc-CCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHH--HHHH-hcCCeEEEEecCCCC--cCccccc
Q 001219 607 YT-PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK-STGGKLLVFQSVLPS--VGIGALS 680 (1121)
Q Consensus 607 fv-Pl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~--~lL~-~~GGkIivF~sg~Pt--~GpG~L~ 680 (1121)
-. +..-.-.+++.+..+.+.+.++.+. ...+...++..+.+-+++|+ +-+. ...-|++||.+-.+- .|-|+|.
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~fH~agDgkLa 282 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQS-VSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAGDGKLG 282 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTGGGTT
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhcC-ccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCCcCcCCCcccc
Confidence 00 1111124667666667777777663 33455677777877777765 2232 124699999988777 4777764
Q ss_pred ccccccCCCCCCCccccccccchhHH----HHHHHHHHHHhcCeEEEEEEecCCccCcccccccccc-cceEEEEeCCCC
Q 001219 681 AREAEGRSNISSGEKETHKLLQPADK----TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYPFS 755 (1121)
Q Consensus 681 ~re~~~r~~~~~gt~~e~~ll~pa~~----FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~-TGG~v~~y~~F~ 755 (1121)
..-........+..+. ++..+.. -..+|+..+.+++|.+ ||+......++. ..|+++ .|+.+-....
T Consensus 283 GIv~pNDg~CHL~~~~---~Yt~s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~-- 354 (503)
T 3v4v_B 283 GIFMPSDGHCHLDSNG---LYSRSTEFDYPSVGQVAQALSAANIQP-IFAVTSAALPVY--QELSKLIPKSAVGELSE-- 354 (503)
T ss_dssp TCCSCCCSSCCBCTTS---BBGGGGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSHHHH--HHHHTTSTTCEEEECCT--
T ss_pred ceecCCCCCeEECCCC---ccccccccCCCCHHHHHHHHHhcCCeE-EEEEcccchhHH--HHHHHhCCCceeeEccc--
Confidence 4321110011111110 1111111 2467777788888843 787777654432 223322 3444555443
Q ss_pred CCCchhHHHHHHHHhccCCccccceEEEEe-CCCcEEEeee--Cccc-cCCC--CceeecCCCCCCeEEEEEEec
Q 001219 756 ALSDPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQEYH--GNFC-KRIP--TDIDLPAIDCNKAIMVTLKHD 824 (1121)
Q Consensus 756 ~~~d~~~L~~dL~r~ltr~~g~~a~mrVR~-S~GL~V~~~~--G~f~-~r~~--~~~~lp~id~dtSia~el~~d 824 (1121)
.+...-+|..+-++.|.. ++.|+... .++|+|+-.- ++.. .... ..-...++.-..++.|.+++.
T Consensus 355 dSsNiv~LI~~aY~~i~S----~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~ 425 (503)
T 3v4v_B 355 DSSNVVQLIMDAYNSLSS----TVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQ 425 (503)
T ss_dssp TSCTHHHHHHHHHHHHHT----CEEEECCCCCTTEEEEBCEECSSSCCCCCCCBSSEEECSCCTTCEEEEEEEEE
T ss_pred cchhHHHHHHHHHHHhhe----EEEEecCCCCCceEEEEEEecCCCCccCcccccCCcccCcccCCEEEEEEEEE
Confidence 223344555555554432 33333322 4677776331 1100 0000 112455566667777766655
No 47
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.04 E-value=0.065 Score=66.09 Aligned_cols=205 Identities=18% Similarity=0.270 Sum_probs=102.4
Q ss_pred CcEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCceEEEEEe-CCEEEEEec--CCCCCCceEeecCCcccccc
Q 001219 533 PAVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATF-DSTIHFYNL--KRALQQPLMLIVPDVEDVYT 608 (1121)
Q Consensus 533 pp~yvFvIDvS~~av~s-G~l~~v~~aI~~~L~~Lp~~~rt~VGiITF-Ds~Vhfynl--~~~~~~pqmlVvsDldd~fv 608 (1121)
|-=.+||||+|.++... .-|+.+...|.+.|..+-++ .||||.+| |+.|.=|.- ...+..|- .+.+..-.
T Consensus 104 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~--~r~GfgsFvDk~~~P~~~~~p~~~~~Pc----~~~~~~c~ 177 (687)
T 3k6s_B 104 PIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITES--GRIGFGSFVDKTVLPFVNTHPDKLRNPC----PNKEKECQ 177 (687)
T ss_dssp CCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCS--CEEEEEEECCCSSTTSSCCSSTTTTCCC----CSCCCCCC
T ss_pred ceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcC--cEEeeEEeeccccCCccccCchhccCCC----CCCCCCcC
Confidence 45689999999986431 01233334455556555544 89999999 544411100 00011110 00010001
Q ss_pred C-CcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHH--HHHH-hcCCeEEEEecCCCCc--Cccccccc
Q 001219 609 P-LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK-STGGKLLVFQSVLPSV--GIGALSAR 682 (1121)
Q Consensus 609 P-l~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~--~lL~-~~GGkIivF~sg~Pt~--GpG~L~~r 682 (1121)
| ..-...+++.+..+.+.+.++.+. ...+...++..|-+.+++|+ .-+. ...-|||||.+-.+-. |-|+|...
T Consensus 178 ~~f~f~~~l~lt~~~~~F~~~v~~~~-isgn~D~PE~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~~H~agDg~l~gi 256 (687)
T 3k6s_B 178 PPFAFRHVLKLTNNSNQFQTEVGKQL-ISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGDGKLGAI 256 (687)
T ss_dssp CCCSCEEEEEEESCSHHHHHHHHTSC-CCCCSSSSCCHHHHHHHHTTCHHHHCCCSSCCEEEEECSSCCCCTTGGGGGTC
T ss_pred CcccceeecccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhhcccccCCccceEEEEEECCCccccCCCccccce
Confidence 1 111224567776667777777764 23445667777766667663 3332 1157999999888764 66665432
Q ss_pred ccc--cCCCCCCCccccccccchhHH----HHHHHHHHHHhcCeEEEEEEecCCccCccccccccc-ccceEEEEeCC
Q 001219 683 EAE--GRSNISSGEKETHKLLQPADK----TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPK-TTGGQVYYYYP 753 (1121)
Q Consensus 683 e~~--~r~~~~~gt~~e~~ll~pa~~----FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~-~TGG~v~~y~~ 753 (1121)
-.. .+=| +. +. ++..+.. -..+|++++.+++|.+ ||+.....+++. ..|++ .+|+.+-....
T Consensus 257 ~~pndg~Ch--l~-~~---~y~~s~~~DyPS~~ql~~~l~~~~I~~-ifavt~~~~~~y--~~l~~~i~~s~v~~L~~ 325 (687)
T 3k6s_B 257 LTPNDGRCH--LE-DN---LYKRSNEFDYPSVGQLAHKLAENNIQP-IFAVTSRMVKTY--EKLTEIIPKSAVGELSE 325 (687)
T ss_dssp CCCCCSCCC--CS-SS---BCSSGGGSCCCCGGGHHHHHHHTTCBC-CEEECGGGHHHH--HHHHHHSSSCCEEECCT
T ss_pred ecCCCCccc--cC-CC---ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeccchhhH--HHHHhhcCCceeeeecc
Confidence 111 1111 10 00 1111111 1345667777888844 666655544432 23332 33455555543
No 48
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=94.73 E-value=0.051 Score=58.70 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=61.8
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCC
Q 001219 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1121)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl 610 (1121)
.+.-+|||||+|.+.- +-++.++++|+..|..+... .+.+|+||+|+.... . . . .++. .|
T Consensus 133 ~~~~vvfLVDtSgSM~--~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~-------~-~-~-~ll~----pf--- 193 (242)
T 3rag_A 133 VALHLVVCLDTSASMR--DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGE-------E-A-T-RLVQ----PF--- 193 (242)
T ss_dssp SCEEEEEEEECSGGGT--TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTT-------C-S-C-EEEE----EE---
T ss_pred CCCCEEEEEECcccHH--HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCc-------c-c-e-eecC----CC---
Confidence 4568999999999875 45899999999999887532 358999999975320 0 0 0 0000 11
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh
Q 001219 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS 659 (1121)
Q Consensus 611 ~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~ 659 (1121)
.... .+...|+.|+ ....+.+|.||..|..+++.
T Consensus 194 --------T~~~-~~~~~l~~L~------agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 194 --------SSEV-NVAALEAELV------ARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp --------ESSC-CHHHHHHHCC------CCSCCCHHHHHHHHHHHHHH
T ss_pred --------CChH-HHHHHHhhCC------CCCCCcHHHHHHHHHHHHHH
Confidence 1111 2344566664 24456699999999999863
No 49
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=94.20 E-value=0.13 Score=58.33 Aligned_cols=88 Identities=15% Similarity=0.268 Sum_probs=61.5
Q ss_pred cceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCCCCc
Q 001219 974 YPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDN 1053 (1121)
Q Consensus 974 YPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~~dn 1053 (1121)
-++||.++.-. ..--..+.++..+|.++.+||||+|..||+|+|+..+..-..
T Consensus 135 ~~rL~~v~G~~-----~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~Er~---------------------- 187 (347)
T 1j72_A 135 VQRLYQVKGKK-----NIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERN---------------------- 187 (347)
T ss_dssp EEEEEEEECSS-----SCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHH----------------------
T ss_pred CcEEEEEECCC-----ceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCHHHHH----------------------
Confidence 47888886421 112235778999999999999999999999999987654332
Q ss_pred HhHHHHHHHHHHHHH-ccCCcceEEEEecCCCcHHHHHhhc
Q 001219 1054 PLSKKLNDVVNEIRR-QRCSYLRLKLCKKGDPSGMVFFSYL 1093 (1121)
Q Consensus 1054 ~ls~~l~~iI~~lr~-~r~~y~~l~ivrqg~~~e~~f~~~L 1093 (1121)
+.+.+.+.|+. .|.....+.++.+|...+. |...|
T Consensus 188 ----~A~~~a~~i~~~~~~g~~~v~~v~EG~E~~~-Fw~~L 223 (347)
T 1j72_A 188 ----KARDLALAIRDSERQGKAQVEIVTDGEEPAE-MIQVL 223 (347)
T ss_dssp ----HHHHHHHHHHTTSCCSSCEEEEEETTCCCHH-HHHHH
T ss_pred ----HHHHHHHHHHhhccCCCceEEEEeCCCCHHH-HHHHh
Confidence 44556667753 3444567889999875543 44555
No 50
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=93.12 E-value=0.24 Score=61.69 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=63.1
Q ss_pred ccceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCcccccCCCC
Q 001219 973 VYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYD 1052 (1121)
Q Consensus 973 lYPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~~~~lp~~d 1052 (1121)
--+|||.++--. .+.-..|.++.++|.++.+||||+|..||+|.|+..+..-.
T Consensus 132 ~~~rL~~vkG~~-----~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~~Er---------------------- 184 (729)
T 1d0n_A 132 VVQRLLQVKGRR-----VVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFER---------------------- 184 (729)
T ss_dssp CCCEEEEEECSS-----SCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCHHHH----------------------
T ss_pred CCcEEEEEECCC-----cEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCHHHH----------------------
Confidence 357898887421 12233578899999999999999999999999998754333
Q ss_pred cHhHHHHHHHHHHHHH-ccCCcceEEEEecCCCcHHHHHhhcc
Q 001219 1053 NPLSKKLNDVVNEIRR-QRCSYLRLKLCKKGDPSGMVFFSYLV 1094 (1121)
Q Consensus 1053 n~ls~~l~~iI~~lr~-~r~~y~~l~ivrqg~~~e~~f~~~LV 1094 (1121)
.+.+.+++.|+. .|..-..+.+|.+|...+ .|...|-
T Consensus 185 ----~kA~~~a~~i~~~er~g~~~i~~v~Eg~e~~-eFw~~LG 222 (729)
T 1d0n_A 185 ----LKATQVSKGIRDNERSGRAQVSVFEEGAEPE-AMLQVLG 222 (729)
T ss_dssp ----HHHHHHHHHHHHHSGGGCSEEEEEETTCCCH-HHHHHHC
T ss_pred ----HHHHHHHHHHhhhhcCCCccEEEecCCCChH-HHHHHcC
Confidence 245566777764 454445788999987544 4545553
No 51
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=92.05 E-value=0.19 Score=60.41 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=57.1
Q ss_pred CCCCcEEEEEEEcchhHHhh--h-HHHHHHHH-HHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccc
Q 001219 530 DPMPAVFFFLIDVSMNALQT--G-ATAAACSA-ISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVED 605 (1121)
Q Consensus 530 ~p~pp~yvFvIDvS~~av~s--G-~l~~v~~a-I~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd 605 (1121)
+..+..++|+||+|.+.... | .+.....+ +...+. +..+ .+||||+|++.+..
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~-~~~~--d~vglv~Fs~~~~~-------------------- 421 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLV-ARTE--KDSHMVAFSDEMLP-------------------- 421 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHH-HHHC--SSEEEEEESSSEEC--------------------
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHH-hccC--CceEEEEECCCceE--------------------
Confidence 34567899999999986431 1 02221111 222222 2122 47999999853211
Q ss_pred cccCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Q 001219 606 VYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSV 674 (1121)
Q Consensus 606 ~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~ 674 (1121)
+|+..+ .. |..+|+.|..+ ...++.++.||..|... +.....||++++|..+.
T Consensus 422 --~~~t~~--------~~-l~~~l~~l~~~----~~GgT~i~~aL~~a~~~-~~~~~~iIliTDg~~~~ 474 (538)
T 1yvr_A 422 --CPITVN--------ML-LHEVVEKMSDI----TMGSTDCALPMLWAQKT-NTAADIFIVFTDCETNV 474 (538)
T ss_dssp --CSCCTT--------SC-HHHHHHHHTTC----CCSCCCTTHHHHHHHHT-TCCCSEEEEEECCCCCS
T ss_pred --cCCCCc--------cc-HHHHHHHHhcC----CCCCCcHHHHHHHHHhc-cCCCCEEEEEcCCCCCC
Confidence 111111 01 34445555432 12356788889888765 33447788888886544
No 52
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=91.30 E-value=0.48 Score=54.35 Aligned_cols=52 Identities=8% Similarity=0.187 Sum_probs=39.1
Q ss_pred cceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcC-ceEEEEecCCCCHH
Q 001219 974 YPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENG-EDALIYIGSSVDSS 1028 (1121)
Q Consensus 974 YPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G-~~i~lwvG~~v~~~ 1028 (1121)
-+|||.+..-... ..--..|.++.++|.++.+||||+| ..||+|+|+..+.+
T Consensus 165 ~~rL~~vrg~~~~---~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~ 217 (371)
T 3fg6_A 165 PTRLFQVRRNLAS---ITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE 217 (371)
T ss_dssp CCEEEEEECCSSS---CCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHH
T ss_pred ccEEEEEeccCCC---ceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHH
Confidence 3689998753110 1112346789999999999999999 99999999987654
No 53
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=91.28 E-value=0.32 Score=55.13 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=39.4
Q ss_pred cceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHH
Q 001219 974 YPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSI 1029 (1121)
Q Consensus 974 YPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~l 1029 (1121)
-++||.++.-.. + ..--..|.++..+|.++.+||||+|..||+|+|+..+..-
T Consensus 124 ~~rL~~v~g~~~--~-~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~e 176 (344)
T 2fh1_A 124 STRLFQVRANSA--G-ATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAE 176 (344)
T ss_dssp SSEEEEEEECTT--C-CEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHH
T ss_pred CceEEEEECCCC--C-ceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHH
Confidence 468999884211 0 1112246789999999999999999999999999876543
No 54
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=88.50 E-value=1.7 Score=46.08 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=63.7
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCCCCCceEeecCCccccccCCccc
Q 001219 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1121)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvsDldd~fvPl~~~ 613 (1121)
=.+||||+|.+... .++.+++.+.+.++.|.+ ..+.||||.+|-.. .| .
T Consensus 5 Dl~fl~D~S~SM~~--di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk-----------------------~~-----~ 54 (212)
T 2iue_A 5 DLYFLMGLSGSAQG--HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM-----------------------TF-----Q 54 (212)
T ss_dssp EEEEEEECCGGGTT--THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS-----------------------CE-----E
T ss_pred EEEEEEeCCCcchh--HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC-----------------------cc-----e
Confidence 47999999998743 255555555544443322 22489999999322 00 0
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHH--HH--HhcCCeEEEEecCCCCc--Cccccc
Q 001219 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL--AL--KSTGGKLLVFQSVLPSV--GIGALS 680 (1121)
Q Consensus 614 lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~--lL--~~~GGkIivF~sg~Pt~--GpG~L~ 680 (1121)
-.+++.+..+.+++.++++. ...+...+|..+.+-++++.. -+ .. .-|++||.+-.+-. |-|++.
T Consensus 55 ~~l~lT~d~~~F~~~v~~~~-vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~ 125 (212)
T 2iue_A 55 HILKLTADSSQFQRELRKQL-VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLG 125 (212)
T ss_dssp EEEEEESCHHHHHHHHHTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGG
T ss_pred ecCCcCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCcccc
Confidence 01233344445555666642 223345667666655565532 12 23 67999998887764 345543
No 55
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=78.93 E-value=0.4 Score=55.53 Aligned_cols=52 Identities=8% Similarity=0.259 Sum_probs=0.0
Q ss_pred cceeEEeecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHH
Q 001219 974 YPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSS 1028 (1121)
Q Consensus 974 YPrLy~lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ 1028 (1121)
.+|||.+..-... ...-..|.++.++|.++.+||||+|..||+|+|+..+.+
T Consensus 178 ~~rLf~VrG~~~~---~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~ 229 (398)
T 3fg7_A 178 STRLFQVQGTGAN---NTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGD 229 (398)
T ss_dssp -------------------------------------------------------
T ss_pred CcEEEEEECCCCC---ceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCCHH
Confidence 4577777542100 111235778999999999999999999999999987654
No 56
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=61.70 E-value=1.6 Score=36.76 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=19.9
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCC
Q 001219 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1121)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~ 486 (1121)
..--|.||++++.- ..+.-.|+||+|-+
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 45667888887654 33556899999964
No 57
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=61.63 E-value=1.8 Score=38.20 Aligned_cols=19 Identities=21% Similarity=0.793 Sum_probs=16.6
Q ss_pred CeEEecCCCCCCCCCcccc
Q 001219 477 RRFICSLCGFTDETPRDYH 495 (1121)
Q Consensus 477 ~~W~CnfC~~~N~vP~~Y~ 495 (1121)
-.|+|.+|...|.++.+|.
T Consensus 16 ~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFT 34 (76)
T ss_dssp EEEECTTTCCEEEESSCCC
T ss_pred cceECccccccCcCccccC
Confidence 4799999999999998763
No 58
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=59.45 E-value=13 Score=44.40 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=55.2
Q ss_pred CCCCcEEEEEEEcchhHHhhh--------HHHHHHHHHHHHHhcCCCCCCceEEEEEeCCEEEEEecCCCCCCceEeecC
Q 001219 530 DPMPAVFFFLIDVSMNALQTG--------ATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVP 601 (1121)
Q Consensus 530 ~p~pp~yvFvIDvS~~av~sG--------~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~Vhfynl~~~~~~pqmlVvs 601 (1121)
++..-.++++||+|.+....+ .++.+ .+|.-+ .+..+ .+|+||+|++.+....+..
T Consensus 359 ~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~A-a~la~~--~~r~~--d~v~lv~Fs~~~~~~~~~~----------- 422 (535)
T 2nvo_A 359 QPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAA-AAMSLI--ALRTE--PDALTMGFAEQFRPLGITP----------- 422 (535)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHH-HHHHHH--HHHHS--SEEEEEEEBSSEEECCCCT-----------
T ss_pred CCCCceEEEEEECCccccCCCCCCCCcccHHHHH-HHHHHH--HcCcC--CceEEEEECCcceEcCCCc-----------
Confidence 345678999999999864311 12211 122211 12122 4899999987542211100
Q ss_pred CccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Q 001219 602 DVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSV 674 (1121)
Q Consensus 602 Dldd~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~ 674 (1121)
+ +.|..+|+.|.... ..++.++.||..|.... .....||+++++.-+.
T Consensus 423 ----------~----------~~l~~~l~~l~~~~----~ggTdi~~~l~~a~~~~-~~~~~vIliTD~~~~~ 470 (535)
T 2nvo_A 423 ----------R----------DTLESAMQKAQSVS----FGGTDCAQPILWAAQER-LDVDTFVVYTDNETWA 470 (535)
T ss_dssp ----------T----------CCHHHHHHHTCCSS----BCCCCTTHHHHHHHHTT-CCCSEEEEEESSCCCC
T ss_pred ----------c----------hhHHHHHHHHhhCC----CCCccHHHHHHHHHHhc-CCCCEEEEEeCCCccC
Confidence 0 11334566664322 23556777777664432 2357888888876444
No 59
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=42.52 E-value=7.6 Score=34.08 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=20.9
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001219 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP 491 (1121)
++||. |+.+ .-..++.+.-+|. ||....+-
T Consensus 4 vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 4 IFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred EEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 68999 9997 2234445555798 99876653
No 60
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.20 E-value=7.4 Score=36.64 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccc
Q 001219 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYH 495 (1121)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~~Y~ 495 (1121)
.+.+|++|+--+ ...-++.-+|+.|+..|-.++.|.
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCEE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCccee
Confidence 489999999653 123344567999999998776653
No 61
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=39.20 E-value=37 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.653 Sum_probs=22.6
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCC
Q 001219 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~ 487 (1121)
...|..|++ .-..++.....++|..||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 578999998 12456777778999999984
No 62
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=36.57 E-value=28 Score=37.53 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCeEEEEEEecCC----ccCcccccccccccceEEEEeCC
Q 001219 709 KAMAIEFAEYQVCVDVFITTQT----YVDIASISVIPKTTGGQVYYYYP 753 (1121)
Q Consensus 709 k~La~~~~~~gIsVDlFl~s~~----~~dlatL~~La~~TGG~v~~y~~ 753 (1121)
.+.|+.+.+.||.|+.+-+... ..|..+|..++..|||..|+...
T Consensus 28 ~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 28 VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 4667788999999999998532 34678999999999999998743
No 63
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=34.15 E-value=13 Score=32.20 Aligned_cols=32 Identities=28% Similarity=0.800 Sum_probs=27.8
Q ss_pred CCCcccCCCCceecCceEEEecCCeEEecCCCC
Q 001219 454 MGPVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1121)
Q Consensus 454 ~~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~ 486 (1121)
..+..|.+|++--.|..+-...|. ..||-|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 357899999999999988888886 99999974
No 64
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.87 E-value=10 Score=38.05 Aligned_cols=34 Identities=12% Similarity=0.452 Sum_probs=22.7
Q ss_pred CcccCCCCceecCceEE-EecCCeEEecCCCCCCC
Q 001219 456 PVRCSRCKAYINPFMKF-IDQGRRFICSLCGFTDE 489 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f-~~~g~~W~CnfC~~~N~ 489 (1121)
-..|..|+-+++--|.. ......|+|++|...-+
T Consensus 85 g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp CEECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CCcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 35666676666666663 23446899999987644
No 65
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=29.31 E-value=34 Score=30.88 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.7
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001219 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N 488 (1121)
--.|..|++- ..+......|+|..|++..
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEE
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEe
Confidence 4689999983 2355556689999999864
No 66
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.58 E-value=19 Score=31.95 Aligned_cols=31 Identities=13% Similarity=0.428 Sum_probs=23.0
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCCC
Q 001219 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1121)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~ 487 (1121)
..|..|+--|.-.|++...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 5667777777777777665578999999764
No 67
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=28.57 E-value=14 Score=29.34 Aligned_cols=30 Identities=27% Similarity=0.804 Sum_probs=24.7
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCC
Q 001219 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~ 486 (1121)
|..|.+|++--.|.-+-..+|. ..||-||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 3579999999888887777776 89999984
No 68
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.49 E-value=22 Score=34.81 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=27.9
Q ss_pred cccCCCCceecCceEEEec----CCeEEecCCCCCCCC----CcccccCC
Q 001219 457 VRCSRCKAYINPFMKFIDQ----GRRFICSLCGFTDET----PRDYHCNL 498 (1121)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~----g~~W~CnfC~~~N~v----P~~Y~~~l 498 (1121)
..|..|+-++.--|..... ...|+|++|...-++ -.+||.++
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~ 122 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGF 122 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSC
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcC
Confidence 6777777777777776542 347999999875442 34555443
No 69
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=26.95 E-value=65 Score=31.06 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCC-CCCceEEEEEeCCEE
Q 001219 553 AAACSAISQVISDLPE-GPRTMVGIATFDSTI 583 (1121)
Q Consensus 553 ~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~V 583 (1121)
+.++++|+..+..-|. ..+++|-+++||..|
T Consensus 113 e~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V 144 (147)
T 1b3t_A 113 EVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGV 144 (147)
T ss_dssp HHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCcceEEEEEeCCCCc
Confidence 5788999988877664 245899999999876
No 70
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.33 E-value=27 Score=28.03 Aligned_cols=8 Identities=38% Similarity=1.431 Sum_probs=4.4
Q ss_pred EEecCCCC
Q 001219 479 FICSLCGF 486 (1121)
Q Consensus 479 W~CnfC~~ 486 (1121)
|+|+.|+.
T Consensus 31 w~CP~Cg~ 38 (46)
T 6rxn_A 31 WCCPVCGV 38 (46)
T ss_dssp CBCTTTCC
T ss_pred CcCcCCCC
Confidence 55555553
No 71
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=25.64 E-value=22 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.627 Sum_probs=25.5
Q ss_pred cccCCCCceecCc----eEEEecC---CeEEecCCCCCCCCC
Q 001219 457 VRCSRCKAYINPF----MKFIDQG---RRFICSLCGFTDETP 491 (1121)
Q Consensus 457 vRC~rCrAYiNPf----~~f~~~g---~~W~CnfC~~~N~vP 491 (1121)
--|++|++++=|- +++..++ -.|+|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 5799999998765 3333332 367899999987765
No 72
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=25.31 E-value=1.1e+02 Score=31.22 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=65.3
Q ss_pred cccchhhhchHHHHHHHH------------hhccCCC---CCCCchHHHHHHHHHcCCCh--hhhhhcc-----cceeEE
Q 001219 922 QLILPEALKLLPLYTLAL------------IKSTGLR---TDGRIDDRSFWITYVSSVSI--PFAVPFV-----YPRMVA 979 (1121)
Q Consensus 922 qLiLPesLklLPlyil~L------------lKS~~L~---~~~s~DeR~~~~~~l~s~~v--~~~l~~l-----YPrLy~ 979 (1121)
..-|||+||.|-.|=.-| .||.--. ..-++||-+|++..+-+..+ ++++..- .|.|++
T Consensus 48 T~~LPeSLkALLAYD~~L~sp~~~~V~E~l~~sId~~gii~S~~~DE~ayY~~g~d~~g~~~EdLmPvWnddP~LPALir 127 (225)
T 4hg1_A 48 TTELPESLXALLAYDRDLLSNYNMPVIETLQKSIDNEGVIHSYSPDEEAYYGVGMDSSGIDIEDLMPVWSNDPRLPALIR 127 (225)
T ss_dssp EECCCHHHHHHHHHCTTCBCTTSCBSSSGGGGGBCTTSEECCCCTHHHHHHHTTGGGSCCCGGGGCCCBCCCTTCBEEEE
T ss_pred cccCcHHHHHHHHhhhhccCcCCCcHHHHHHHhhhhcCceecCCcchHHHhhccccccCCcHHHhcccccCCCCCcceEE
Confidence 357999999986664322 2332222 24589999999988765544 4444332 355666
Q ss_pred eecCCCCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhC
Q 001219 980 IHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFG 1035 (1121)
Q Consensus 980 lh~l~~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFG 1035 (1121)
|.... -+.+..-....+.+|-|=+--.+.==+|+.+..=-+.++.+|.
T Consensus 128 I~H~G--------DQ~i~IY~tE~DenGEYPi~R~E~nefWLaE~SLieYL~gIf~ 175 (225)
T 4hg1_A 128 IDHVG--------DQAIFIYITERDANGEYPIARMERNEFWLAESSLVEYLYNIIS 175 (225)
T ss_dssp ECCSS--------SSEEEEEESCCCTTSCCCEEEEETTEEEECSSSHHHHHHHHHT
T ss_pred eccCC--------CceEEEEEeecccCCCCCceehhhhhHHHhHhhHHHHHHHHHh
Confidence 64321 1234444445566666655555555689998888889999984
No 73
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=24.94 E-value=14 Score=38.46 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=21.1
Q ss_pred CCCCCcccCCCCc-eecCceEEEecCCeEEecCCC
Q 001219 452 GDMGPVRCSRCKA-YINPFMKFIDQGRRFICSLCG 485 (1121)
Q Consensus 452 g~~~pvRC~rCrA-YiNPf~~f~~~g~~W~CnfC~ 485 (1121)
+.-...+|++|++ ||...- +..+.++|.||+
T Consensus 130 ~~L~l~~C~~Cgg~fv~~~~---~~~~~f~Cp~C~ 161 (192)
T 2avu_E 130 GLLQLSSCNCCGGNFITHAH---QPVGSFACSLCQ 161 (192)
T ss_dssp TSEEEEECTTTCCEEEEESS---CCSSCCCCTTC-
T ss_pred CceeeCcCCCCCCCeeCccC---CCCCCCcCCCCC
Confidence 3445789999997 454432 234679999999
No 74
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=24.42 E-value=40 Score=27.68 Aligned_cols=10 Identities=30% Similarity=1.454 Sum_probs=6.3
Q ss_pred eEEecCCCCC
Q 001219 478 RFICSLCGFT 487 (1121)
Q Consensus 478 ~W~CnfC~~~ 487 (1121)
+|+|..||..
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 4666666654
No 75
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.62 E-value=14 Score=33.33 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=5.7
Q ss_pred eEEecCCCC
Q 001219 478 RFICSLCGF 486 (1121)
Q Consensus 478 ~W~CnfC~~ 486 (1121)
.|+|++|+.
T Consensus 60 dW~CPvCga 68 (81)
T 2kn9_A 60 DWSCPDCGA 68 (81)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 466666664
No 76
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.84 E-value=26 Score=36.63 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.7
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCC
Q 001219 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1121)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~ 487 (1121)
.-+|..|+-... +...|+|++|++.
T Consensus 171 ~~~C~~CG~i~~-------g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK-------GEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE-------SSCCSBCTTTCCB
T ss_pred EEEECCCCCEEc-------CcCCCCCCCCCCC
Confidence 578999985433 2335999999964
No 77
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.74 E-value=36 Score=29.70 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=6.3
Q ss_pred eEEecCCCC
Q 001219 478 RFICSLCGF 486 (1121)
Q Consensus 478 ~W~CnfC~~ 486 (1121)
.|+|+.|+.
T Consensus 40 dw~CP~Cga 48 (70)
T 1dx8_A 40 SFMCPACRS 48 (70)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 477777775
No 78
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.86 E-value=17 Score=33.10 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=17.0
Q ss_pred CCcccCCCCceecCc-----------eEEEecCCeEEecCCCC
Q 001219 455 GPVRCSRCKAYINPF-----------MKFIDQGRRFICSLCGF 486 (1121)
Q Consensus 455 ~pvRC~rCrAYiNPf-----------~~f~~~g~~W~CnfC~~ 486 (1121)
..-+|..|+-...+- ..|.+--..|+|.+|+.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 356777777444431 22222223477777775
No 79
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.62 E-value=37 Score=28.79 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCc-ccccCCCC
Q 001219 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPR-DYHCNLGP 500 (1121)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~-~Y~~~ld~ 500 (1121)
.+.+|.+|+.|-= +-+|..||..+.++. .-|+.-|.
T Consensus 5 ~mr~C~~CgvYTL----------k~~CP~CG~~T~~~hParfSp~Dk 41 (60)
T 2apo_B 5 RMKKCPKCGLYTL----------KEICPKCGEKTVIPKPPKFSLEDR 41 (60)
T ss_dssp CCEECTTTCCEES----------SSBCSSSCSBCBCCCCCCCCTTCT
T ss_pred hceeCCCCCCEec----------cccCcCCCCcCCCCCCCCCCCCcc
Confidence 5789999999843 235999998876542 34455443
Done!