Query 001220
Match_columns 1121
No_of_seqs 306 out of 309
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 19:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.6E-18 7.9E-23 185.5 13.9 141 532-681 2-156 (352)
2 TIGR01659 sex-lethal sex-letha 99.7 9.6E-18 2.1E-22 187.1 13.6 145 528-681 102-260 (346)
3 TIGR01628 PABP-1234 polyadenyl 99.7 2.6E-17 5.7E-22 191.2 13.5 191 535-737 2-210 (562)
4 TIGR01628 PABP-1234 polyadenyl 99.7 5.9E-16 1.3E-20 180.1 22.0 149 532-682 87-245 (562)
5 KOG0107 Alternative splicing f 99.7 2.2E-17 4.7E-22 168.4 6.8 68 533-600 10-82 (195)
6 TIGR01645 half-pint poly-U bin 99.7 1.8E-16 4E-21 187.1 14.8 151 532-682 106-272 (612)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 2.6E-16 5.6E-21 181.3 14.9 148 532-681 1-159 (481)
8 TIGR01648 hnRNP-R-Q heterogene 99.7 3.4E-16 7.4E-21 184.2 13.4 186 533-737 58-267 (578)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.4E-16 1.4E-20 168.1 14.6 150 533-682 89-337 (352)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.2E-15 2.6E-20 175.8 15.7 154 529-682 271-462 (481)
11 TIGR01622 SF-CC1 splicing fact 99.6 1.4E-15 3.1E-20 171.6 13.7 149 531-681 87-253 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.2E-15 6.9E-20 170.7 13.9 153 529-682 171-363 (509)
13 KOG1924 RhoA GTPase effector D 99.6 2E-15 4.2E-20 177.3 10.2 110 975-1095 619-750 (1102)
14 TIGR01622 SF-CC1 splicing fact 99.6 8.1E-15 1.8E-19 165.5 14.9 152 531-682 184-436 (457)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.6 8.3E-15 1.8E-19 167.3 14.7 152 531-682 293-490 (509)
16 KOG0117 Heterogeneous nuclear 99.6 4.4E-15 9.5E-20 167.2 11.0 133 531-676 81-228 (506)
17 TIGR01648 hnRNP-R-Q heterogene 99.5 5.7E-14 1.2E-18 165.7 14.1 144 531-682 136-295 (578)
18 KOG0148 Apoptosis-promoting RN 99.5 3.2E-14 7E-19 152.9 10.9 145 533-682 62-226 (321)
19 KOG0105 Alternative splicing f 99.4 1.7E-12 3.7E-17 134.0 10.9 146 532-680 5-174 (241)
20 KOG0144 RNA-binding protein CU 99.4 8.1E-13 1.7E-17 148.8 8.7 140 533-680 34-189 (510)
21 KOG0117 Heterogeneous nuclear 99.3 1E-11 2.3E-16 140.5 11.1 209 453-682 90-319 (506)
22 KOG0145 RNA-binding protein EL 99.2 2.3E-11 5E-16 130.6 9.9 141 533-682 41-195 (360)
23 PLN03134 glycine-rich RNA-bind 99.2 4.4E-11 9.5E-16 119.2 9.7 72 531-602 32-113 (144)
24 PF00076 RRM_1: RNA recognitio 99.2 3.2E-11 6.9E-16 101.4 6.9 60 536-595 1-65 (70)
25 KOG0132 RNA polymerase II C-te 99.2 3.3E-09 7.2E-14 126.3 24.4 63 532-594 420-482 (894)
26 KOG0106 Alternative splicing f 99.0 2.5E-10 5.4E-15 121.1 6.6 143 534-682 2-159 (216)
27 KOG0124 Polypyrimidine tract-b 99.0 2.5E-10 5.4E-15 126.9 6.4 150 533-682 113-278 (544)
28 PF14259 RRM_6: RNA recognitio 99.0 1.2E-09 2.5E-14 93.7 6.9 60 536-595 1-65 (70)
29 KOG0131 Splicing factor 3b, su 99.0 2.2E-09 4.7E-14 111.2 10.0 144 533-682 9-165 (203)
30 KOG0123 Polyadenylate-binding 99.0 3.5E-09 7.6E-14 120.1 11.8 133 534-682 2-141 (369)
31 smart00362 RRM_2 RNA recogniti 98.9 5.9E-09 1.3E-13 85.4 8.2 60 535-594 1-64 (72)
32 KOG0109 RNA-binding protein LA 98.9 1.9E-09 4.1E-14 117.7 6.7 130 535-679 4-135 (346)
33 COG0724 RNA-binding proteins ( 98.9 1.3E-08 2.9E-13 101.1 11.9 115 533-647 115-254 (306)
34 PLN03120 nucleic acid binding 98.9 4E-09 8.7E-14 114.6 8.8 123 533-660 4-138 (260)
35 TIGR01659 sex-lethal sex-letha 98.8 8.1E-09 1.7E-13 116.2 9.0 71 533-603 193-275 (346)
36 KOG0110 RNA-binding protein (R 98.8 3.1E-08 6.7E-13 117.7 10.8 149 526-678 509-677 (725)
37 KOG0122 Translation initiation 98.8 2.2E-08 4.7E-13 107.6 8.7 72 532-603 188-269 (270)
38 TIGR01645 half-pint poly-U bin 98.7 1.9E-08 4.1E-13 120.2 9.1 64 532-595 203-272 (612)
39 KOG1457 RNA binding protein (c 98.7 4.3E-08 9.2E-13 104.4 10.1 154 532-685 33-277 (284)
40 KOG0113 U1 small nuclear ribon 98.7 2.4E-08 5.2E-13 109.6 7.5 77 517-595 87-169 (335)
41 PLN03213 repressor of silencin 98.7 2.8E-08 6E-13 114.1 8.0 70 533-602 10-87 (759)
42 cd00590 RRM RRM (RNA recogniti 98.7 8.1E-08 1.8E-12 79.1 8.2 61 535-595 1-66 (74)
43 PF13893 RRM_5: RNA recognitio 98.7 4.8E-08 1E-12 81.5 6.8 46 550-595 1-47 (56)
44 KOG0121 Nuclear cap-binding pr 98.7 3E-08 6.5E-13 98.4 6.5 103 526-641 29-141 (153)
45 KOG4206 Spliceosomal protein s 98.7 1.8E-07 4E-12 99.6 12.8 155 528-683 4-210 (221)
46 smart00360 RRM RNA recognition 98.7 6.3E-08 1.4E-12 78.9 7.3 58 538-595 1-64 (71)
47 KOG0111 Cyclophilin-type pepti 98.7 1.3E-08 2.8E-13 108.0 3.9 93 532-640 9-111 (298)
48 KOG0114 Predicted RNA-binding 98.6 4.7E-08 1E-12 94.2 6.5 63 533-595 18-83 (124)
49 KOG0144 RNA-binding protein CU 98.6 2.5E-08 5.4E-13 113.3 5.0 72 531-602 122-205 (510)
50 KOG0148 Apoptosis-promoting RN 98.6 8E-08 1.7E-12 104.5 8.0 69 532-600 163-233 (321)
51 PLN03121 nucleic acid binding 98.6 9.9E-08 2.2E-12 102.9 8.6 67 533-600 5-76 (243)
52 KOG0123 Polyadenylate-binding 98.6 1.5E-07 3.3E-12 107.0 9.4 149 534-682 168-337 (369)
53 KOG4207 Predicted splicing fac 98.6 5.8E-08 1.2E-12 102.5 5.3 69 534-602 14-92 (256)
54 KOG0145 RNA-binding protein EL 98.6 3.5E-07 7.5E-12 99.2 10.8 150 533-682 127-346 (360)
55 KOG0112 Large RNA-binding prot 98.4 8.4E-08 1.8E-12 116.2 2.5 146 528-682 367-517 (975)
56 KOG0125 Ataxin 2-binding prote 98.4 3.6E-07 7.8E-12 101.6 6.7 70 533-602 96-171 (376)
57 KOG3671 Actin regulatory prote 98.4 8E-05 1.7E-09 86.8 25.5 112 545-680 21-139 (569)
58 KOG0151 Predicted splicing reg 98.4 3.8E-07 8.2E-12 108.4 6.9 64 532-595 173-245 (877)
59 KOG1924 RhoA GTPase effector D 98.4 2.2E-06 4.8E-11 102.9 12.2 25 970-994 625-649 (1102)
60 KOG0127 Nucleolar protein fibr 98.3 1.9E-06 4E-11 100.6 10.1 149 534-682 6-184 (678)
61 KOG0146 RNA-binding protein ET 98.2 1.7E-06 3.6E-11 94.4 5.4 71 532-602 18-100 (371)
62 KOG4660 Protein Mei2, essentia 98.2 1.2E-06 2.7E-11 102.4 4.5 68 531-598 73-143 (549)
63 smart00361 RRM_1 RNA recogniti 98.1 4.7E-06 1E-10 73.3 6.5 49 547-595 2-63 (70)
64 KOG0153 Predicted RNA-binding 98.1 4.6E-06 1E-10 93.5 7.5 63 533-595 228-290 (377)
65 KOG1190 Polypyrimidine tract-b 98.1 1.9E-05 4.1E-10 90.1 10.7 147 533-682 297-478 (492)
66 KOG0147 Transcriptional coacti 98.0 1.6E-05 3.4E-10 93.3 9.6 146 534-680 279-514 (549)
67 KOG0149 Predicted RNA-binding 98.0 7.4E-06 1.6E-10 88.2 5.9 56 534-589 13-74 (247)
68 KOG4205 RNA-binding protein mu 98.0 8.2E-06 1.8E-10 91.4 6.4 131 532-672 5-155 (311)
69 KOG0108 mRNA cleavage and poly 98.0 1.1E-05 2.3E-10 94.0 7.4 62 534-595 19-86 (435)
70 KOG0109 RNA-binding protein LA 98.0 7.4E-06 1.6E-10 90.3 5.6 96 531-633 76-175 (346)
71 KOG0110 RNA-binding protein (R 97.9 2.2E-05 4.7E-10 94.3 8.5 251 520-797 373-690 (725)
72 PF07744 SPOC: SPOC domain; I 97.9 4.1E-07 8.8E-12 86.2 -5.6 112 976-1088 1-119 (119)
73 KOG0147 Transcriptional coacti 97.8 1.9E-05 4.1E-10 92.7 5.5 146 533-680 179-344 (549)
74 KOG0130 RNA-binding protein RB 97.8 2.9E-05 6.3E-10 78.3 5.9 65 536-600 75-149 (170)
75 KOG1923 Rac1 GTPase effector F 97.8 2E-05 4.3E-10 95.3 4.9 28 1089-1117 457-490 (830)
76 PHA03247 large tegument protei 97.7 0.0017 3.7E-08 86.6 19.7 21 445-466 2171-2191(3151)
77 KOG0120 Splicing factor U2AF, 97.7 0.0001 2.2E-09 87.0 8.2 161 520-680 276-478 (500)
78 KOG0127 Nucleolar protein fibr 97.6 0.00043 9.2E-09 81.7 12.5 145 532-676 116-354 (678)
79 KOG0126 Predicted RNA-binding 97.6 1E-05 2.3E-10 84.6 -1.1 66 530-595 32-103 (219)
80 PF00076 RRM_1: RNA recognitio 97.6 6.5E-05 1.4E-09 63.2 3.7 62 621-682 1-65 (70)
81 KOG1456 Heterogeneous nuclear 97.5 0.00025 5.4E-09 80.6 7.5 138 531-680 29-183 (494)
82 KOG4208 Nucleolar RNA-binding 97.5 0.00022 4.8E-09 76.0 6.5 70 533-602 49-129 (214)
83 PHA03247 large tegument protei 97.4 0.0019 4.2E-08 86.2 15.6 12 975-986 2962-2973(3151)
84 KOG1190 Polypyrimidine tract-b 97.4 0.00059 1.3E-08 78.4 9.7 147 535-682 152-361 (492)
85 KOG1457 RNA binding protein (c 97.4 0.00012 2.6E-09 78.8 3.5 65 530-594 207-273 (284)
86 KOG0107 Alternative splicing f 97.4 0.00016 3.5E-09 75.5 4.1 64 618-682 10-73 (195)
87 PLN03134 glycine-rich RNA-bind 97.3 0.0003 6.5E-09 70.7 5.6 72 611-682 27-102 (144)
88 PF14259 RRM_6: RNA recognitio 97.3 0.0003 6.5E-09 60.4 4.4 60 621-680 1-63 (70)
89 KOG0131 Splicing factor 3b, su 97.3 0.00032 6.9E-09 73.8 5.4 68 533-600 96-174 (203)
90 KOG0415 Predicted peptidyl pro 97.2 0.00057 1.2E-08 77.4 6.3 86 517-602 223-318 (479)
91 KOG0116 RasGAP SH3 binding pro 97.1 0.00055 1.2E-08 79.7 4.9 57 533-589 288-350 (419)
92 KOG4209 Splicing factor RNPS1, 96.9 0.00082 1.8E-08 72.9 4.3 62 533-595 101-168 (231)
93 KOG0132 RNA polymerase II C-te 96.9 0.088 1.9E-06 65.1 21.2 63 616-680 419-481 (894)
94 KOG4212 RNA-binding protein hn 96.8 0.0065 1.4E-07 70.6 10.7 157 521-682 37-282 (608)
95 KOG0226 RNA-binding proteins [ 96.8 0.0014 3E-08 71.9 5.0 65 531-595 188-258 (290)
96 KOG0112 Large RNA-binding prot 96.7 0.0013 2.9E-08 81.0 4.8 74 529-602 451-530 (975)
97 KOG3671 Actin regulatory prote 96.7 0.015 3.1E-07 68.8 12.8 46 547-592 92-138 (569)
98 smart00362 RRM_2 RNA recogniti 96.7 0.0025 5.5E-08 52.1 5.0 62 620-681 1-64 (72)
99 KOG0120 Splicing factor U2AF, 96.6 0.003 6.4E-08 75.0 6.4 158 527-685 169-360 (500)
100 KOG1548 Transcription elongati 96.6 0.018 3.9E-07 65.7 11.6 149 532-680 133-338 (382)
101 cd00590 RRM RRM (RNA recogniti 96.5 0.0041 8.9E-08 51.2 4.9 61 620-680 1-64 (74)
102 KOG2193 IGF-II mRNA-binding pr 96.5 0.0025 5.5E-08 73.6 4.7 137 534-682 2-145 (584)
103 KOG0146 RNA-binding protein ET 96.5 0.0028 6.1E-08 69.9 4.5 70 531-600 283-360 (371)
104 KOG0533 RRM motif-containing p 96.4 0.0047 1E-07 67.7 5.9 59 534-592 84-147 (243)
105 smart00360 RRM RNA recognition 96.3 0.0044 9.5E-08 50.4 3.9 59 623-681 1-63 (71)
106 KOG4454 RNA binding protein (R 96.3 0.0019 4.1E-08 69.8 1.9 65 531-595 7-75 (267)
107 KOG4206 Spliceosomal protein s 96.2 0.01 2.3E-07 64.2 6.8 72 529-600 142-219 (221)
108 KOG0124 Polypyrimidine tract-b 96.2 0.0067 1.5E-07 69.2 5.5 64 531-594 208-277 (544)
109 KOG4211 Splicing factor hnRNP- 96.1 0.061 1.3E-06 63.7 13.2 136 534-677 11-166 (510)
110 KOG0121 Nuclear cap-binding pr 96.1 0.005 1.1E-07 62.2 3.7 67 616-682 34-104 (153)
111 PLN03120 nucleic acid binding 96.1 0.0067 1.4E-07 67.1 5.1 64 618-682 4-68 (260)
112 PF04059 RRM_2: RNA recognitio 96.1 0.02 4.3E-07 55.2 7.5 69 535-603 3-87 (97)
113 KOG1456 Heterogeneous nuclear 96.1 0.071 1.5E-06 61.5 12.9 151 531-682 285-473 (494)
114 COG0724 RNA-binding proteins ( 96.0 0.0088 1.9E-07 59.9 4.8 65 618-682 115-183 (306)
115 KOG0108 mRNA cleavage and poly 95.5 0.013 2.9E-07 68.9 4.6 64 619-682 19-86 (435)
116 KOG0128 RNA-binding protein SA 95.4 0.0041 8.9E-08 76.7 -0.2 134 521-676 655-797 (881)
117 KOG0114 Predicted RNA-binding 95.4 0.019 4.1E-07 56.5 4.3 64 617-680 17-81 (124)
118 KOG4205 RNA-binding protein mu 95.3 0.012 2.6E-07 66.7 3.2 54 532-586 96-155 (311)
119 KOG0129 Predicted RNA-binding 95.2 0.48 1E-05 56.8 15.9 154 517-672 243-429 (520)
120 KOG1830 Wiskott Aldrich syndro 94.9 1.2 2.5E-05 52.7 17.5 14 793-806 234-247 (518)
121 PF13893 RRM_5: RNA recognitio 94.5 0.038 8.3E-07 46.2 3.5 45 635-681 1-46 (56)
122 KOG4672 Uncharacterized conser 94.5 0.17 3.6E-06 59.1 9.6 29 879-907 304-332 (487)
123 PRK15319 AIDA autotransporter- 94.5 0.044 9.6E-07 72.6 5.6 6 1009-1014 1762-1767(2039)
124 PRK15319 AIDA autotransporter- 94.3 0.055 1.2E-06 71.8 5.8 6 535-540 1261-1266(2039)
125 KOG1365 RNA-binding protein Fu 94.3 0.22 4.8E-06 57.8 9.7 148 538-686 166-353 (508)
126 PLN03121 nucleic acid binding 94.2 0.054 1.2E-06 59.6 4.6 63 619-682 6-69 (243)
127 smart00361 RRM_1 RNA recogniti 94.1 0.047 1E-06 48.2 3.4 50 633-682 3-63 (70)
128 KOG1923 Rac1 GTPase effector F 94.0 0.15 3.2E-06 63.2 8.3 17 1079-1095 477-493 (830)
129 KOG4661 Hsp27-ERE-TATA-binding 94.0 0.073 1.6E-06 63.8 5.5 65 530-594 402-472 (940)
130 KOG4212 RNA-binding protein hn 94.0 0.072 1.6E-06 62.4 5.3 71 525-595 528-599 (608)
131 KOG0106 Alternative splicing f 93.7 0.042 9.1E-07 59.6 2.7 61 533-595 99-159 (216)
132 KOG0130 RNA-binding protein RB 93.7 0.076 1.6E-06 54.4 4.3 63 617-679 71-137 (170)
133 KOG1855 Predicted RNA-binding 93.7 0.047 1E-06 63.8 3.1 65 532-596 230-313 (484)
134 PF14605 Nup35_RRM_2: Nup53/35 93.7 0.12 2.6E-06 44.4 4.8 49 537-586 5-53 (53)
135 PF08777 RRM_3: RNA binding mo 93.6 0.14 3E-06 49.7 5.8 58 534-591 2-59 (105)
136 KOG2416 Acinus (induces apopto 93.5 0.055 1.2E-06 65.2 3.2 71 531-602 442-521 (718)
137 PF05918 API5: Apoptosis inhib 93.2 0.33 7.1E-06 59.1 9.2 141 55-262 2-142 (556)
138 KOG2314 Translation initiation 93.1 0.091 2E-06 63.1 4.4 70 514-595 57-131 (698)
139 KOG1548 Transcription elongati 92.9 0.15 3.3E-06 58.4 5.6 47 547-593 290-338 (382)
140 KOG0105 Alternative splicing f 92.2 0.18 3.9E-06 54.0 4.7 62 617-678 5-67 (241)
141 KOG4574 RNA-binding protein (c 92.2 0.098 2.1E-06 65.1 3.1 77 527-603 292-374 (1007)
142 PF15023 DUF4523: Protein of u 92.0 0.24 5.1E-06 51.3 5.0 55 540-595 97-151 (166)
143 KOG0111 Cyclophilin-type pepti 91.3 0.12 2.5E-06 56.5 2.2 71 617-687 9-87 (298)
144 KOG1925 Rac1 GTPase effector F 91.0 0.39 8.4E-06 57.4 6.1 110 968-1095 281-404 (817)
145 PLN03213 repressor of silencin 90.9 0.28 6.1E-06 58.3 4.9 64 617-680 9-74 (759)
146 KOG4672 Uncharacterized conser 90.6 1.3 2.8E-05 52.2 9.6 22 881-902 301-322 (487)
147 KOG4210 Nuclear localization s 89.9 0.42 9.1E-06 53.8 5.1 144 532-675 87-246 (285)
148 PHA01732 proline-rich protein 89.9 0.36 7.8E-06 46.1 3.8 11 983-993 62-72 (94)
149 KOG4849 mRNA cleavage factor I 88.7 18 0.00038 42.5 16.5 62 619-680 81-148 (498)
150 KOG3152 TBP-binding protein, a 88.7 0.27 5.9E-06 54.7 2.4 64 532-595 73-154 (278)
151 KOG1996 mRNA splicing factor [ 87.9 0.81 1.8E-05 51.9 5.4 50 546-595 299-355 (378)
152 KOG1830 Wiskott Aldrich syndro 87.7 7.1 0.00015 46.5 12.9 11 561-571 146-156 (518)
153 PF15449 Retinal: Retinal prot 86.6 15 0.00033 48.0 15.7 16 978-993 1133-1148(1287)
154 KOG4210 Nuclear localization s 86.2 0.41 9E-06 53.8 2.1 69 533-602 185-263 (285)
155 KOG4676 Splicing factor, argin 85.7 0.79 1.7E-05 53.6 4.0 67 535-601 9-84 (479)
156 PF04847 Calcipressin: Calcipr 85.3 1.8 3.9E-05 46.2 6.1 58 545-602 7-70 (184)
157 KOG0113 U1 small nuclear ribon 83.5 1.4 3.1E-05 50.1 4.7 66 617-682 100-169 (335)
158 KOG2202 U2 snRNP splicing fact 82.5 0.62 1.3E-05 51.9 1.4 46 548-593 83-134 (260)
159 KOG0151 Predicted splicing reg 82.4 1.2 2.6E-05 55.3 3.8 65 617-681 173-244 (877)
160 KOG1922 Rho GTPase effector BN 81.9 6.1 0.00013 50.2 9.9 29 980-1008 466-497 (833)
161 KOG0122 Translation initiation 81.3 2.6 5.7E-05 47.0 5.6 64 617-680 188-255 (270)
162 KOG1922 Rho GTPase effector BN 81.0 7.3 0.00016 49.5 10.1 22 1079-1100 504-525 (833)
163 PRK15313 autotransport protein 80.1 3 6.5E-05 53.6 6.3 9 532-540 182-190 (955)
164 KOG4208 Nucleolar RNA-binding 79.9 2.1 4.6E-05 46.6 4.3 64 617-682 48-118 (214)
165 KOG0566 Inositol-1,4,5-triphos 79.7 10 0.00022 49.0 10.4 48 189-236 94-157 (1080)
166 KOG0566 Inositol-1,4,5-triphos 79.2 15 0.00032 47.6 11.6 30 194-223 91-120 (1080)
167 KOG0307 Vesicle coat complex C 78.8 34 0.00074 45.0 14.7 6 996-1001 956-961 (1049)
168 KOG4307 RNA binding protein RB 78.3 5.3 0.00012 49.9 7.3 70 532-601 865-942 (944)
169 KOG4660 Protein Mei2, essentia 77.7 2.4 5.1E-05 51.5 4.2 67 615-682 72-138 (549)
170 KOG0307 Vesicle coat complex C 77.4 34 0.00073 45.0 14.1 15 1051-1065 947-961 (1049)
171 KOG4307 RNA binding protein RB 76.8 36 0.00078 43.1 13.5 30 653-682 37-66 (944)
172 PRK09752 adhesin; Provisional 76.7 2.4 5.2E-05 55.5 4.1 11 122-132 50-60 (1250)
173 PF05172 Nup35_RRM: Nup53/35/4 76.2 5.1 0.00011 39.1 5.3 43 546-588 18-73 (100)
174 KOG4849 mRNA cleavage factor I 76.2 28 0.00061 40.9 11.8 57 536-592 83-147 (498)
175 PRK15313 autotransport protein 75.9 5.6 0.00012 51.2 6.9 6 850-855 550-555 (955)
176 PF07174 FAP: Fibronectin-atta 75.0 13 0.00029 42.2 8.8 18 976-994 127-144 (297)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 74.8 3.6 7.8E-05 43.4 4.2 61 533-593 7-79 (176)
178 KOG0226 RNA-binding proteins [ 74.0 3.9 8.5E-05 46.0 4.4 158 524-682 87-258 (290)
179 PF11608 Limkain-b1: Limkain b 73.7 8.1 0.00018 37.4 5.8 57 535-595 4-65 (90)
180 PRK09752 adhesin; Provisional 72.3 3.8 8.1E-05 53.8 4.2 6 710-715 702-707 (1250)
181 KOG0115 RNA-binding protein p5 72.1 3.7 8E-05 46.1 3.6 59 531-589 29-92 (275)
182 KOG0391 SNF2 family DNA-depend 71.3 22 0.00048 47.3 10.3 16 547-562 1502-1517(1958)
183 KOG0116 RasGAP SH3 binding pro 70.7 4.5 9.7E-05 48.2 4.1 57 619-675 289-349 (419)
184 KOG0115 RNA-binding protein p5 69.5 11 0.00024 42.6 6.5 82 581-678 6-94 (275)
185 KOG0125 Ataxin 2-binding prote 68.0 6.3 0.00014 45.7 4.4 66 617-682 95-162 (376)
186 KOG1925 Rac1 GTPase effector F 67.8 6.6 0.00014 47.6 4.6 18 1098-1116 383-400 (817)
187 PF05518 Totivirus_coat: Totiv 66.7 60 0.0013 41.6 12.6 29 493-521 268-296 (759)
188 KOG0119 Splicing factor 1/bran 66.2 1.1E+02 0.0025 37.6 14.2 17 663-679 214-230 (554)
189 KOG2591 c-Mpl binding protein, 63.4 15 0.00033 45.2 6.5 78 520-598 162-249 (684)
190 PRK14950 DNA polymerase III su 63.3 17 0.00037 44.7 7.2 19 87-105 42-62 (585)
191 KOG1984 Vesicle coat complex C 62.2 4.6E+02 0.0099 34.8 18.8 7 1083-1089 446-452 (1007)
192 PRK14950 DNA polymerase III su 59.0 34 0.00074 42.2 8.7 9 972-980 467-475 (585)
193 COG5175 MOT2 Transcriptional r 58.8 13 0.00028 43.4 4.7 62 533-594 114-190 (480)
194 KOG1985 Vesicle coat complex C 58.3 82 0.0018 40.8 11.7 16 998-1013 244-259 (887)
195 KOG4590 Signal transduction pr 56.7 30 0.00065 41.5 7.4 12 1081-1092 338-349 (409)
196 KOG2391 Vacuolar sorting prote 56.1 24 0.00053 41.3 6.3 42 1054-1095 314-358 (365)
197 KOG1996 mRNA splicing factor [ 56.0 9.9 0.00022 43.6 3.2 51 632-682 300-355 (378)
198 KOG0153 Predicted RNA-binding 53.7 15 0.00033 43.0 4.2 60 615-676 225-284 (377)
199 PF03276 Gag_spuma: Spumavirus 53.0 59 0.0013 40.3 9.0 9 729-737 40-48 (582)
200 KOG0129 Predicted RNA-binding 51.8 32 0.0007 42.1 6.6 121 517-664 351-484 (520)
201 KOG0149 Predicted RNA-binding 50.0 15 0.00033 41.1 3.4 63 616-678 10-76 (247)
202 KOG2675 Adenylate cyclase-asso 49.5 14 0.0003 44.4 3.1 23 617-639 37-60 (480)
203 PF08675 RNA_bind: RNA binding 48.7 67 0.0014 31.3 6.9 62 535-598 10-71 (87)
204 KOG2236 Uncharacterized conser 48.0 43 0.00094 40.6 6.8 7 596-602 263-269 (483)
205 PLN00131 hypothetical protein; 47.9 35 0.00075 36.3 5.4 55 5-60 89-147 (218)
206 PF04059 RRM_2: RNA recognitio 47.3 40 0.00086 33.0 5.4 65 620-685 3-74 (97)
207 KOG0260 RNA polymerase II, lar 47.0 4E+02 0.0086 36.5 15.1 21 235-255 523-545 (1605)
208 KOG2213 Apoptosis inhibitor 5/ 46.8 24 0.00051 42.2 4.5 90 53-161 2-91 (460)
209 PF14605 Nup35_RRM_2: Nup53/35 46.6 22 0.00047 30.8 3.1 52 619-673 2-53 (53)
210 PF04625 DEC-1_N: DEC-1 protei 46.5 55 0.0012 38.2 7.1 9 868-876 68-76 (407)
211 PF03276 Gag_spuma: Spumavirus 46.1 97 0.0021 38.5 9.3 9 809-817 114-122 (582)
212 KOG4209 Splicing factor RNPS1, 45.7 18 0.0004 40.0 3.2 64 616-680 99-166 (231)
213 KOG1985 Vesicle coat complex C 43.9 2.3E+02 0.005 37.0 12.4 9 1044-1052 282-290 (887)
214 PF08777 RRM_3: RNA binding mo 43.2 38 0.00083 33.1 4.7 58 619-679 2-60 (105)
215 PF05518 Totivirus_coat: Totiv 43.2 2.8E+02 0.006 36.0 12.9 10 214-223 83-92 (759)
216 KOG2202 U2 snRNP splicing fact 41.4 16 0.00034 41.3 1.9 50 633-682 83-136 (260)
217 PLN02983 biotin carboxyl carri 39.2 85 0.0018 36.0 7.1 27 974-1000 219-245 (274)
218 smart00498 FH2 Formin Homology 39.1 20 0.00043 42.5 2.4 110 977-1099 5-135 (432)
219 KOG0162 Myosin class I heavy c 38.5 2.6E+02 0.0057 36.3 11.5 50 535-588 581-637 (1106)
220 KOG2068 MOT2 transcription fac 38.3 22 0.00047 41.4 2.4 61 533-593 77-149 (327)
221 KOG1995 Conserved Zn-finger pr 37.1 46 0.001 39.2 4.8 66 530-595 63-142 (351)
222 KOG0260 RNA polymerase II, lar 36.7 1.4E+03 0.03 31.9 17.5 27 133-159 604-631 (1605)
223 PRK14948 DNA polymerase III su 36.3 1.1E+02 0.0024 38.5 8.1 19 86-104 41-61 (620)
224 KOG2236 Uncharacterized conser 36.3 97 0.0021 37.9 7.3 15 548-562 245-259 (483)
225 PF01690 PLRV_ORF5: Potato lea 36.2 25 0.00055 42.6 2.6 10 973-982 121-130 (465)
226 PLN02805 D-lactate dehydrogena 35.6 68 0.0015 39.8 6.2 78 526-603 257-347 (555)
227 KOG2891 Surface glycoprotein [ 35.2 11 0.00023 43.0 -0.5 50 545-594 173-247 (445)
228 PHA03378 EBNA-3B; Provisional 35.2 5.2E+02 0.011 33.5 13.2 27 551-577 257-285 (991)
229 KOG2893 Zn finger protein [Gen 35.2 2.5E+02 0.0055 32.0 9.7 9 1085-1093 314-322 (341)
230 KOG0686 COP9 signalosome, subu 33.2 18 0.00039 43.4 0.8 109 37-161 111-243 (466)
231 KOG4410 5-formyltetrahydrofola 33.1 66 0.0014 37.2 5.0 51 522-579 326-377 (396)
232 KOG4454 RNA binding protein (R 33.1 15 0.00032 40.9 0.1 64 615-682 6-75 (267)
233 KOG0119 Splicing factor 1/bran 32.3 6.3E+02 0.014 31.7 13.0 22 659-680 207-228 (554)
234 PF01690 PLRV_ORF5: Potato lea 32.1 58 0.0012 39.7 4.7 23 1030-1052 79-101 (465)
235 KOG0415 Predicted peptidyl pro 31.9 64 0.0014 38.3 4.8 68 615-682 236-307 (479)
236 COG5175 MOT2 Transcriptional r 31.8 49 0.0011 38.9 3.9 70 610-679 106-188 (480)
237 KOG0162 Myosin class I heavy c 30.2 5.2E+02 0.011 33.9 12.1 22 86-108 127-148 (1106)
238 KOG1984 Vesicle coat complex C 29.4 1.5E+03 0.034 30.4 17.1 18 1079-1096 289-306 (1007)
239 KOG2391 Vacuolar sorting prote 29.0 1.4E+02 0.003 35.4 6.8 6 1058-1063 333-338 (365)
240 PHA03378 EBNA-3B; Provisional 28.8 5.4E+02 0.012 33.4 11.9 13 836-848 639-651 (991)
241 KOG0391 SNF2 family DNA-depend 28.2 1.1E+03 0.024 32.9 14.8 19 200-218 1086-1104(1958)
242 PF15449 Retinal: Retinal prot 27.3 4.1E+02 0.009 35.9 11.0 13 180-192 221-233 (1287)
243 PF11767 SET_assoc: Histone ly 25.7 2.2E+02 0.0047 26.4 6.1 49 544-595 11-59 (66)
244 PF10567 Nab6_mRNP_bdg: RNA-re 25.5 77 0.0017 36.8 4.0 146 532-679 14-214 (309)
245 PF08952 DUF1866: Domain of un 24.4 1.7E+02 0.0037 30.9 5.9 46 547-595 50-95 (146)
246 KOG0559 Dihydrolipoamide succi 23.1 1.1E+02 0.0024 36.6 4.7 16 979-994 241-256 (457)
247 KOG4676 Splicing factor, argin 22.1 18 0.0004 42.9 -1.6 70 520-589 138-209 (479)
248 KOG0682 Ammonia permease [Inor 21.6 45 0.00098 40.8 1.4 56 147-216 291-346 (500)
249 TIGR03042 PS_II_psbQ_bact phot 21.5 3E+02 0.0066 29.0 7.0 55 37-91 27-89 (142)
250 KOG4207 Predicted splicing fac 21.0 95 0.0021 34.7 3.4 63 618-680 13-79 (256)
251 PF06003 SMN: Survival motor n 20.8 33 0.00071 38.6 0.0 15 629-643 8-22 (264)
252 PF01213 CAP_N: Adenylate cycl 20.6 33 0.00072 39.7 0.0 13 667-679 111-123 (312)
253 PRK07764 DNA polymerase III su 20.4 3.1E+02 0.0067 36.0 8.3 18 86-103 40-59 (824)
254 PF11608 Limkain-b1: Limkain b 20.1 1.6E+02 0.0035 28.9 4.4 57 619-678 3-61 (90)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=3.6e-18 Score=185.47 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=120.2
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
+..+||||||+.+++|+||+++|++||+|.+|++.+ .||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 468999999999999999999999999999999853 5799999999999999999999998876 788887
Q ss_pred ccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHh
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
+.-. ....+.||||+++..++.++|..-+..++....+.+ .+ ...++..+|||++.|||..|++.|+
T Consensus 82 ~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 82 PSSD---------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred cccc---------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 6211 224568999999999999999999999886655533 22 3467899999999999999999999
Q ss_pred hhcc
Q 001220 678 QHRK 681 (1121)
Q Consensus 678 ~~r~ 681 (1121)
++..
T Consensus 153 g~~~ 156 (352)
T TIGR01661 153 GTTP 156 (352)
T ss_pred CCcc
Confidence 8763
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=9.6e-18 Score=187.06 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=121.5
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 597 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 597 (1121)
+--...++||||||+.+++|+||+++|+.||+|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3445689999999999999999999999999999999853 5699999999999999999999998775 67
Q ss_pred EEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHH
Q 001220 598 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAM 673 (1121)
Q Consensus 598 ~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~ 673 (1121)
+|+++.-. ......|||++++..+++|+|...|.+++.+..+.+. + ...++.++|||++.|||..|+
T Consensus 182 ~~a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 182 SYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred eccccccc---------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 77765211 1245689999999999999999999998877665442 2 334579999999999999999
Q ss_pred HHHhhhcc
Q 001220 674 AHLRQHRK 681 (1121)
Q Consensus 674 ~~l~~~r~ 681 (1121)
+.|+++..
T Consensus 253 ~~lng~~~ 260 (346)
T TIGR01659 253 SALNNVIP 260 (346)
T ss_pred HHhCCCcc
Confidence 99998754
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.72 E-value=2.6e-17 Score=191.24 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=138.1
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 604 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 604 (1121)
.||||||+.++||++|+++|.+||+|.+|++.+ ++|||||+|.+.+||.+|++.|+++.+. ||.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999953 5689999999999999999999998665 666653322
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..+ -....+|||++++..++.++|...|.++|.+..+.+ .+ ...++.++|+|++.|+|..|++.|++...
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 222 113568999999999999999999999987777655 33 34678999999999999999999998765
Q ss_pred ccCC-CCCCCCCCCCCcccccCCCCCCCCcceEEeec----ccccccccccCCCCcccccc
Q 001220 682 SRSN-YLPPNTGPANAAMSQIDGARSVPAAPIHVDIR----SNRLGNISAGGFGSPHTAPF 737 (1121)
Q Consensus 682 ~rs~-~~~~~~~~~~~~~~~~d~~~~~Ps~~lwi~~p----~~~~~nlA~~~fGei~rfqi 737 (1121)
.... +..+......+ .......-.+++.-++| ++.|.+ .+..||+|+.+++
T Consensus 155 ~~~~i~v~~~~~~~~~----~~~~~~~~~~l~V~nl~~~~tee~L~~-~F~~fG~i~~~~i 210 (562)
T TIGR01628 155 NDKEVYVGRFIKKHER----EAAPLKKFTNLYVKNLDPSVNEDKLRE-LFAKFGEITSAAV 210 (562)
T ss_pred cCceEEEecccccccc----ccccccCCCeEEEeCCCCcCCHHHHHH-HHHhcCCEEEEEE
Confidence 4111 00000000000 00000111233333566 444555 7789999998877
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=5.9e-16 Score=180.06 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=118.4
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccC
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 604 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 604 (1121)
..++|||+||+.++++++|.+.|++||.|.++.+.. .||||||+|++.++|.+|++.|+|..+. .|.+..-.-
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 356899999999999999999999999999999864 6899999999999999999999998664 343321110
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
.... .+......+.|||++++..+++|+|...|..+|.+..+.+ .+ ...++.++|+|++.|+|..|++.|+++..
T Consensus 167 ~~~~--~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 167 KHER--EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cccc--ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 0000 0112345678999999999999999999999887666544 22 33466899999999999999999999887
Q ss_pred c
Q 001220 682 S 682 (1121)
Q Consensus 682 ~ 682 (1121)
+
T Consensus 245 ~ 245 (562)
T TIGR01628 245 G 245 (562)
T ss_pred c
Confidence 5
No 5
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.2e-17 Score=168.45 Aligned_cols=68 Identities=25% Similarity=0.492 Sum_probs=64.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++||||||+++|++.|||.+|.+||+|.+||+++ ++|||||||+|.+||.+|+++|+|+.+| |||+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 68999999999999999999999999999999998 9999999999999999999999999998 55554
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=1.8e-16 Score=187.12 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=122.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeccc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG 603 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~ 603 (1121)
..|+||||||+.+++|++|+++|++||+|.+|.+. .+||||||+|.+.++|..|++.|+|..+. +|++.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999984 27999999999999999999999998876 56665542
Q ss_pred CC--CCccccc--eeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHH
Q 001220 604 LG--TKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 604 ~g--~rg~~~G--v~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
-. .+..... ......+.|||||++..++.|+|...|..+|.+..+.+ .| ...+++.||||++.++|..|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 11 1111111 11235689999999999999999999999887766644 22 45788999999999999999999
Q ss_pred Hhhhccc
Q 001220 676 LRQHRKS 682 (1121)
Q Consensus 676 l~~~r~~ 682 (1121)
||++-.+
T Consensus 266 mNg~elg 272 (612)
T TIGR01645 266 MNLFDLG 272 (612)
T ss_pred hCCCeeC
Confidence 9988654
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.68 E-value=2.6e-16 Score=181.27 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=116.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--CCcee----EEEEeccc-C
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDVG-L 604 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~--G~~~~----RI~F~r~~-~ 604 (1121)
||+.||||||+.+++|+||+++|++||+|.++.+.+.||||||+|++.++|.+|++.|+ |..+. +|+|+... +
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999864 44343 77776432 1
Q ss_pred CCCccccceeccc--cceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCC--ccccccccCHHHHHHHHHHHhhhc
Q 001220 605 GTKGVINGVAVGS--CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE--GALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 605 g~rg~~~Gv~~~~--s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek--~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
...+--.+-..++ ...|||++++..++.|+|...|..+|.+..+.+ +.++ ..++|||++.|+|..|++.||++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i--~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVT--FTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEE--EecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 1111000001122 347899999999999999999998887666533 2333 469999999999999999999987
Q ss_pred c
Q 001220 681 K 681 (1121)
Q Consensus 681 ~ 681 (1121)
+
T Consensus 159 i 159 (481)
T TIGR01649 159 I 159 (481)
T ss_pred c
Confidence 4
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=3.4e-16 Score=184.22 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=131.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee---EEEEecccC
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGL 604 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---RI~F~r~~~ 604 (1121)
.++||||||+.+++|+||+++|++||+|.++++. .+||||||+|.+.+||.+|++.|+|..+. .|.+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~--- 134 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI--- 134 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc---
Confidence 5899999999999999999999999999999884 38999999999999999999999997652 111111
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccc--cCCceee----ccCCCccccccccCHHHHHHHHHHHhh
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY--KGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~--kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
....+.||||+|+..+++|||+.||.++.. ..-+.+. ....++.++|||++.++|..|++.|+.
T Consensus 135 ----------S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 135 ----------SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ----------cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 125789999999999999999999998752 1111111 124578999999999999999988764
Q ss_pred hcc---ccCCCCCCCCCCCCCcccccCCCCCCCCcceEEe-ec----ccccccccccCC--CCcccccc
Q 001220 679 HRK---SRSNYLPPNTGPANAAMSQIDGARSVPAAPIHVD-IR----SNRLGNISAGGF--GSPHTAPF 737 (1121)
Q Consensus 679 ~r~---~rs~~~~~~~~~~~~~~~~~d~~~~~Ps~~lwi~-~p----~~~~~nlA~~~f--Gei~rfqi 737 (1121)
.++ ++.-...... .. ...+........+|+|+ ++ ++.|.+ .+..| |+|+++++
T Consensus 205 gki~l~Gr~I~VdwA~--p~---~~~d~~~~~~~k~LfVgNL~~~~tee~L~~-~F~~f~~G~I~rV~~ 267 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAE--PE---EEVDEDVMAKVKILYVRNLMTTTTEEIIEK-SFSEFKPGKVERVKK 267 (578)
T ss_pred cceEecCceEEEEeec--cc---ccccccccccccEEEEeCCCCCCCHHHHHH-HHHhcCCCceEEEEe
Confidence 332 2110000000 00 00010011234566665 44 444555 78889 99999765
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=6.4e-16 Score=168.05 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=120.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 600 (1121)
.++||||||+.++++++|+.+|++||.|..+.+.. .||||||+|.+.+||..|++.|+|..+. +++|+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 46899999999999999999999999999888753 5899999999999999999999998652 67776
Q ss_pred cccC--CC----------------Ccccc---------------------------------------------------
Q 001220 601 DVGL--GT----------------KGVIN--------------------------------------------------- 611 (1121)
Q Consensus 601 r~~~--g~----------------rg~~~--------------------------------------------------- 611 (1121)
+... .. ++..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 4211 00 00000
Q ss_pred ------cee--------ccccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHH
Q 001220 612 ------GVA--------VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAM 673 (1121)
Q Consensus 612 ------Gv~--------~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~ 673 (1121)
+.. .+.++.|||||++..++.++|.+-|.++|.+..+.+. ....++.++|+|++.|||.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 000 1234579999999999999999999999877776553 3467899999999999999999
Q ss_pred HHHhhhccc
Q 001220 674 AHLRQHRKS 682 (1121)
Q Consensus 674 ~~l~~~r~~ 682 (1121)
+.||++..+
T Consensus 329 ~~lnG~~~~ 337 (352)
T TIGR01661 329 LSLNGYTLG 337 (352)
T ss_pred HHhCCCEEC
Confidence 999998876
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.65 E-value=1.2e-15 Score=175.77 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=121.5
Q ss_pred cccCCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 529 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.-.++++||||||+. .+++++|+.+|+.||.|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|.|++.
T Consensus 271 ~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 271 GGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 346789999999998 699999999999999999999876 5799999999999999999999999765 6777643
Q ss_pred cC-----------CC---Ccccc----ce----------eccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccC
Q 001220 603 GL-----------GT---KGVIN----GV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS 654 (1121)
Q Consensus 603 ~~-----------g~---rg~~~----Gv----------~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ 654 (1121)
.. |. +++.+ +. ...+++.|||+|++..++.|+|..-|..+|......++.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 21 00 11100 00 01367899999999999999998888887753333343333
Q ss_pred C----CccccccccCHHHHHHHHHHHhhhccc
Q 001220 655 C----EGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 655 e----k~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
. ++..+|||++.|||..|+..|+++-.+
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~ 462 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLN 462 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccC
Confidence 3 488999999999999999999998654
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=1.4e-15 Score=171.58 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=116.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
...++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|+. |+|..+. +|.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4578999999999999999999999999999999853 58999999999999999996 8998775 34333
Q ss_pred ccc--CCCCcc--ccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHH
Q 001220 601 DVG--LGTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 601 r~~--~g~rg~--~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A 672 (1121)
... ...+.. ..| ....++.||||+++..+++++|...|..+|.+..+.+. + ...++.++|||.+.|+|..|
T Consensus 166 ~~~~~~~~~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 166 QAEKNRAAKAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred chhhhhhhhcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 211 000000 001 01237899999999999999999999988866665442 2 24578899999999999999
Q ss_pred HHHHhhhcc
Q 001220 673 MAHLRQHRK 681 (1121)
Q Consensus 673 ~~~l~~~r~ 681 (1121)
++.|+++.+
T Consensus 245 ~~~l~g~~i 253 (457)
T TIGR01622 245 LEVMNGFEL 253 (457)
T ss_pred HHhcCCcEE
Confidence 999998653
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.61 E-value=3.2e-15 Score=170.72 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=120.7
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhcc------------CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW- 595 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~f------------GpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 595 (1121)
.-...++||||||+.++|+++|+++|..| ++|.++++-..+|||||+|++.++|..|+ .|+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34568999999999999999999999974 57888999889999999999999999999 59997654
Q ss_pred -EEEEecccCCC-----------Cc---cccce--------eccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e
Q 001220 596 -RVKFMDVGLGT-----------KG---VINGV--------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T 651 (1121)
Q Consensus 596 -RI~F~r~~~g~-----------rg---~~~Gv--------~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~ 651 (1121)
.|++.++.--. .. ...+. .....+.|||||++..++.|+|..-|..+|.+..+.+ .
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 55555442100 00 00000 1124689999999999999999999999886666544 3
Q ss_pred c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 652 D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 652 D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+ ...++.++|||.+.++|..|++.|+++..+
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~ 363 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG 363 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3 446899999999999999999999998876
No 13
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=2e-15 Score=177.32 Aligned_cols=110 Identities=18% Similarity=0.279 Sum_probs=77.3
Q ss_pred eeecccccCCccceeEEeecccccccccccCCCCCCCCc-ccccCCcccc-ccccccccccCCCCcccccccccCCCC--
Q 001220 975 QWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWP-AKLDMTKRTD-FRHVKSTFTSTPPNKREVCRLVPSSPG-- 1050 (1121)
Q Consensus 975 ~WqG~l~kSganyCtIl~s~lds~IC~Ai~a~sepS~Wp-s~eD~t~RtD-fq~Le~TFSstPpkKREV~RLvPas~~-- 1050 (1121)
.|+..++|.|.||-+|.... |++.|||. ..+|...+.| |+.|..+|+.++..+++-.-.+=-...
T Consensus 619 ~~k~e~~Mrr~nW~kI~p~d-----------~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~k 687 (1102)
T KOG1924|consen 619 VYKPEVPMRRFNWSKIVPRD-----------LSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTK 687 (1102)
T ss_pred cCCCCCccccCCccccCccc-----------cCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhh
Confidence 59999999999999999888 99999999 7899999999 999999999988887776554444332
Q ss_pred ---------CCcchhcHHHHHhhcCc------cceeeccc---hhhHHHHhhhccCCchhhhc
Q 001220 1051 ---------DHKGFQDFVSYLKQREC------AGVIKIPA---VKSIWARLMFILPYSQDICS 1095 (1121)
Q Consensus 1051 ---------D~k~fqDFisyLkqkd~------AGViKips---~k~~w~rlL~LlP~SeEvcs 1095 (1121)
|-|..|.--++|.+..- ..+..+.. ..+|...|.+-+|+-|.+.+
T Consensus 688 Kk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~ 750 (1102)
T KOG1924|consen 688 KKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNK 750 (1102)
T ss_pred hhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22345555555544320 01111111 12367778888887766655
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=8.1e-15 Score=165.53 Aligned_cols=152 Identities=19% Similarity=0.270 Sum_probs=119.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
+.+++||||||+.+++|++|+++|+.||.|..|.+. ..+|||||+|.+.++|..|++.|+|..+. +|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 347999999999999999999999999999999987 35799999999999999999999997664 78885
Q ss_pred cccC------------------C----------------C------------------------Ccccc---------c-
Q 001220 601 DVGL------------------G----------------T------------------------KGVIN---------G- 612 (1121)
Q Consensus 601 r~~~------------------g----------------~------------------------rg~~~---------G- 612 (1121)
.... | . .|.++ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 3110 0 0 00000 0
Q ss_pred ---------e----eccccceEEEccCCCcch----------hHHHHHhhhcccccCCceeeccCCCccccccccCHHHH
Q 001220 613 ---------V----AVGSCFHVYVGNIPNQWA----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 669 (1121)
Q Consensus 613 ---------v----~~~~s~~LwVG~iss~~~----------keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA 669 (1121)
+ ...+++.|+|.++-...+ +|+|..|+.++|.+..+.+..-...+.++|+|++.|+|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHH
Confidence 0 003567888888854433 57899999999988777676566789999999999999
Q ss_pred HHHHHHHhhhccc
Q 001220 670 TTAMAHLRQHRKS 682 (1121)
Q Consensus 670 ~~A~~~l~~~r~~ 682 (1121)
..|+++|+++.-+
T Consensus 424 ~~A~~~lnGr~f~ 436 (457)
T TIGR01622 424 LAAFQALNGRYFG 436 (457)
T ss_pred HHHHHHhcCcccC
Confidence 9999999998754
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.59 E-value=8.3e-15 Score=167.32 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=118.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
...++||||||+..+++++|+++|+.||+|..|.+.. .+|||||+|.+.++|..|++.|+|..++ +|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999998853 6899999999999999999999999876 67776
Q ss_pred cccCCCCcc--cc----------c-------eeccccceEEEccCCCcc----------hhHHHHHhhhcccccCCceee
Q 001220 601 DVGLGTKGV--IN----------G-------VAVGSCFHVYVGNIPNQW----------AKDEILHESYKVVYKGPYMVT 651 (1121)
Q Consensus 601 r~~~g~rg~--~~----------G-------v~~~~s~~LwVG~iss~~----------~keELf~E~~kag~kgpv~f~ 651 (1121)
..+...... .+ + +...+++.|||.++.... +.|+|..|+.++|.+..+.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 443110000 00 0 112378899999986432 457889999999877766442
Q ss_pred -c------cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 652 -D------LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 652 -D------l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
. ....+.+||||++.|+|..|++.|||...+
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~ 490 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN 490 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 1 223578999999999999999999997754
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.4e-15 Score=167.23 Aligned_cols=133 Identities=23% Similarity=0.372 Sum_probs=112.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe----c--cCceEEEEecCHHHHHHHHHhhcCCceeEEEEecccC
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF----P--IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGL 604 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~----~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~ 604 (1121)
+-.|.+|||.|+.|+.|+||.-+|++-|+|-.|++- . +||||||.|.+-++|..|++.|++..+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--------- 151 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--------- 151 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc---------
Confidence 568999999999999999999999999999999973 2 7999999999999999999999997543
Q ss_pred CCCccccceecc-ccceEEEccCCCcchhHHHHHhhhccc--------ccCCceeeccCCCccccccccCHHHHHHHHHH
Q 001220 605 GTKGVINGVAVG-SCFHVYVGNIPNQWAKDEILHESYKVV--------YKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 605 g~rg~~~Gv~~~-~s~~LwVG~iss~~~keELf~E~~kag--------~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
.|..-||++. .+|.|+||+|+..|.||||+.|+.++. ++.+.+ -...|+.+||||+++.-|+.|..-
T Consensus 152 --~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d--k~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 152 --PGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD--KTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred --CCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc--cccccceEEEEeecchhHHHHHhh
Confidence 2344566665 899999999999999999999999987 222221 146789999999999988877543
Q ss_pred H
Q 001220 676 L 676 (1121)
Q Consensus 676 l 676 (1121)
|
T Consensus 228 l 228 (506)
T KOG0117|consen 228 L 228 (506)
T ss_pred c
Confidence 3
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=5.7e-14 Score=165.69 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=114.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhcCCc--ee----E
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIRNHF--SW----R 596 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~v~~~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~--~~----R 596 (1121)
...++||||||+.++++++|.++|++|+. +.++.++ ..||||||+|++.+||..|++.|.... +| +
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34789999999999999999999999974 4455554 258999999999999999999887543 23 6
Q ss_pred EEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcc--cccCCceeeccCCCccccccccCHHHHHHHHH
Q 001220 597 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 674 (1121)
Q Consensus 597 I~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~ka--g~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~ 674 (1121)
|+++.+..... -.....++.||||+++..+++|+|..+|..+ +.+..+.+. ++.++|||++.|||..||+
T Consensus 216 VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHH
Confidence 77776632111 0011246899999999999999999999998 666654332 5789999999999999999
Q ss_pred HHhhhccc
Q 001220 675 HLRQHRKS 682 (1121)
Q Consensus 675 ~l~~~r~~ 682 (1121)
.||++..+
T Consensus 288 ~lnG~~i~ 295 (578)
T TIGR01648 288 ELNGKELE 295 (578)
T ss_pred HhCCCEEC
Confidence 99997766
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.2e-14 Score=152.93 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=121.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.=+++||.|.+.++-++|++.|.+||+|.+-++.+ +|||+||-|-+-+||+.|+..|+|..++ |-..+-+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999888754 8999999999999999999999999887 5666654
Q ss_pred cCCCCccccceec----------cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHH
Q 001220 603 GLGTKGVINGVAV----------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 603 ~~g~rg~~~Gv~~----------~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A 672 (1121)
.. +.+||-.- ..++.+|||||.+..++|+|-.-|..||-+-+ +.-|-+++++||-|+|.|.|+.|
T Consensus 142 Kp---~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E--VRvFk~qGYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 142 KP---SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE--VRVFKDQGYAFVRFETKEAAAHA 216 (321)
T ss_pred Cc---cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceE--EEEecccceEEEEecchhhHHHH
Confidence 33 33455443 37899999999998888777766666554444 56678899999999999999999
Q ss_pred HHHHhhhccc
Q 001220 673 MAHLRQHRKS 682 (1121)
Q Consensus 673 ~~~l~~~r~~ 682 (1121)
..+||..-++
T Consensus 217 Iv~mNntei~ 226 (321)
T KOG0148|consen 217 IVQMNNTEIG 226 (321)
T ss_pred HHHhcCceeC
Confidence 9999998876
No 19
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.7e-12 Score=134.03 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=115.7
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 604 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 604 (1121)
.+|.+|||||++++.|.||+.+|-+||+|..|-+.- +..||||+|+|.+||++|+..-+|-..- ||||.+-+-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 478999999999999999999999999999998752 6789999999999999999998887542 999997751
Q ss_pred -----------CCCcccc------ceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHH
Q 001220 605 -----------GTKGVIN------GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPE 667 (1121)
Q Consensus 605 -----------g~rg~~~------Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~e 667 (1121)
|.+|.-+ +..-.+-..+.|-+.+++-+-.+|..-|++++ .+-|.+..-.+.=.|||-+.|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG---dvCfadv~rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG---DVCFADVQRDGVGVVEYLRKE 161 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC---Ceeeeeeecccceeeeeeehh
Confidence 1111111 11111456789999999988899999999854 555777666778889999999
Q ss_pred HHHHHHHHHhhhc
Q 001220 668 EATTAMAHLRQHR 680 (1121)
Q Consensus 668 dA~~A~~~l~~~r 680 (1121)
|-.-|.+.|.-++
T Consensus 162 DMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 162 DMKYAVRKLDDQK 174 (241)
T ss_pred hHHHHHHhhcccc
Confidence 9888887776544
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.1e-13 Score=148.79 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=123.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 599 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 599 (1121)
.=+||||.|+..++|.||+++|++||.+..|.+.+ .+||+||-|...+||.+|+.+|.+.+.. .|||
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 34799999999999999999999999999998853 7899999999999999999999988654 9999
Q ss_pred ecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--ccCCCccccccccCHHHHHHHHHHH
Q 001220 600 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 600 ~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~--Dl~ek~~LpVEF~t~edA~~A~~~l 676 (1121)
+|.- |-. +...+.||||-++.+.+++|+..=|-+||.++++.+ . +..+|+++||-|.+-|-|..||+.|
T Consensus 114 Ad~E---~er-----~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 114 ADGE---RER-----IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cchh---hhc-----cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 9761 210 245788999999999999999999999998998855 3 4788999999999999999999999
Q ss_pred hhhc
Q 001220 677 RQHR 680 (1121)
Q Consensus 677 ~~~r 680 (1121)
|+.-
T Consensus 186 ng~~ 189 (510)
T KOG0144|consen 186 NGTQ 189 (510)
T ss_pred ccce
Confidence 9964
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1e-11 Score=140.50 Aligned_cols=209 Identities=17% Similarity=0.213 Sum_probs=153.7
Q ss_pred CCCCCCCCCCCC--CCCccCccccc--cCccCCCCC---CCCCCCCcccccccCCCCCCCCCCCCCCCcceeeeecCCcc
Q 001220 453 SMPRDLPNPQML--SPAARTPLHFR--NNSFEGRNH---FPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPA 525 (1121)
Q Consensus 453 s~pr~~~~~~~~--s~~~~~~~d~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~g~p~ 525 (1121)
-+|||+-.-.+. +-.+-.-.|+| -|.|.|.|- |+.-.+++-+++.+--.|=.+ .| -|-+.
T Consensus 90 kIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E--ir-----------~GK~i 156 (506)
T KOG0117|consen 90 KIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE--IR-----------PGKLL 156 (506)
T ss_pred CCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc--cc-----------CCCEe
Confidence 368888774442 22244455555 467888665 766666665665553211110 01 12233
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhh-cCC-cee
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYI-RNH-FSW 595 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~v~~~-------~~rgfAFVeF~~i~DAv~A~~~L-~G~-~~~ 595 (1121)
-.-|--+.|.||||||+-+-+++||.++|.+.|+ +.+|.++ +.||||||+|+|-+-|..|++-| +|+ .+|
T Consensus 157 gvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 157 GVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred EEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 3334457899999999999999999999999998 6688886 38999999999999999998765 555 345
Q ss_pred ----EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHH
Q 001220 596 ----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 671 (1121)
Q Consensus 596 ----RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~ 671 (1121)
-|+.+++...-. +-.....+.|||=|+.-.++.|.|..+|..++.++.+ +-+ |+++||-|..-|||..
T Consensus 237 gn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV--kk~--rDYaFVHf~eR~davk 308 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV--KKP--RDYAFVHFAEREDAVK 308 (506)
T ss_pred CCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEe--ecc--cceeEEeecchHHHHH
Confidence 899998853221 1112358999999999999999999999999877774 434 7799999999999999
Q ss_pred HHHHHhhhccc
Q 001220 672 AMAHLRQHRKS 682 (1121)
Q Consensus 672 A~~~l~~~r~~ 682 (1121)
||+.||++-+.
T Consensus 309 Am~~~ngkeld 319 (506)
T KOG0117|consen 309 AMKETNGKELD 319 (506)
T ss_pred HHHHhcCceec
Confidence 99999998876
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=130.64 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=114.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
--+|.|-+|+.+.|++|++.+|+..|+||+....| +-||.||+|.+..||++|+..|+|-++- +|-|+||
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 35899999999999999999999999999999876 4599999999999999999999998764 8999999
Q ss_pred cCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee----eccCCCccccccccCHHHHHHHHHHHhh
Q 001220 603 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 603 ~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f----~Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
- -..|. --+|||.|++...+-.||+.=|.-+|.+-..++ ...-.|+.-+|-|++-+||..|.+.||+
T Consensus 121 S---s~~Ik------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 121 S---SDSIK------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred C---hhhhc------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 3 22222 357999999997666666555555553332222 2256789999999999999999999999
Q ss_pred hccc
Q 001220 679 HRKS 682 (1121)
Q Consensus 679 ~r~~ 682 (1121)
+...
T Consensus 192 ~~P~ 195 (360)
T KOG0145|consen 192 QKPS 195 (360)
T ss_pred CCCC
Confidence 8754
No 23
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.21 E-value=4.4e-11 Score=119.16 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=64.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999998852 5899999999999999999999998765 67776
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 44
No 24
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.20 E-value=3.2e-11 Score=101.35 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=56.7
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 536 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 536 LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
||||||+.+++++||++.|+.||+|..+.+.+ .++||||+|.+.+||..|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 79999999999999999999999999999876 5999999999999999999999997654
No 25
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=3.3e-09 Score=126.30 Aligned_cols=63 Identities=22% Similarity=0.475 Sum_probs=59.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
.|++||||.|.-+++|.||..+|+.||.|++|.+-.+||+|||--.+-.||.+|+..|....+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv 482 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKV 482 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccc
Confidence 489999999999999999999999999999999999999999999999999999999996543
No 26
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.5e-10 Score=121.10 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=112.7
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccCCCCcc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGV 609 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g~rg~ 609 (1121)
..+|||+|+..+.+.||+++|..||.|.+|.+.. ||+||+|.|..||.+|+..|+|+.++ .+++++..-+.+|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999999876 88999999999999999999999887 56777754333322
Q ss_pred -ccc----------eeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhh
Q 001220 610 -ING----------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 610 -~~G----------v~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
++| ++....+.|.|=+++.-..--+|..=|..++.. + ..+. ..+..+|||.+.+||..|+.-|++
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~--~~~~-~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-T--YVDA-RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-c--hhhh-hccccceeehhhhhhhhcchhccc
Confidence 222 223466777777777766556666666666655 3 2222 789999999999999999999988
Q ss_pred hccc
Q 001220 679 HRKS 682 (1121)
Q Consensus 679 ~r~~ 682 (1121)
+-+-
T Consensus 156 ~~~~ 159 (216)
T KOG0106|consen 156 KKLN 159 (216)
T ss_pred hhhc
Confidence 6544
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=2.5e-10 Score=126.90 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=122.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeccc-
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG- 603 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~- 603 (1121)
-|.+|||+|+-...|+-|+..|..||||.++-+- .-+|||||||+=.+-|.-|.+-|+|.-++ -|++.|+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5889999999999999999999999999999872 37999999999999999999999999887 68888884
Q ss_pred CC-CCcccccee--ccccceEEEccCCCcchhHHHHHhhhcccccCCcee----eccCCCccccccccCHHHHHHHHHHH
Q 001220 604 LG-TKGVINGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 604 ~g-~rg~~~Gv~--~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f----~Dl~ek~~LpVEF~t~edA~~A~~~l 676 (1121)
.+ ++..|.-|. ++.-+.|||..|.+..++++|.+=|.+||.+--+.. +...-+++=||||.+...-..|...|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 11 122232222 247789999999999999999999999996655422 44567889999999988777777788
Q ss_pred hhhccc
Q 001220 677 RQHRKS 682 (1121)
Q Consensus 677 ~~~r~~ 682 (1121)
|-.-.|
T Consensus 273 NlFDLG 278 (544)
T KOG0124|consen 273 NLFDLG 278 (544)
T ss_pred chhhcc
Confidence 776544
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.97 E-value=1.2e-09 Score=93.66 Aligned_cols=60 Identities=30% Similarity=0.496 Sum_probs=53.9
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 536 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 536 LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
|+|+||+++++++||++.|++||.|+.|.+... +|||||+|.+.+||.+|++.++|..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999999999999875 799999999999999999999986543
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.97 E-value=2.2e-09 Score=111.23 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=114.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccC
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 604 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 604 (1121)
..+||||||..-++|+-|-++|-+-||+-++.+= ..+|||||||++.+||.=|++.|++-++. +|+|....-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 3589999999999999999999999999999872 27999999999999999999999987776 899987631
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccc--cCCceee--c-cCCCccccccccCHHHHHHHHHHHhhh
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY--KGPYMVT--D-LSCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~--kgpv~f~--D-l~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
+++ ..--.-+|+||+.-+.++...|-+=+.++|. ..|-.+. + ...+...++=|++.|.+.+|++.|+++
T Consensus 89 ~~~------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 89 HQK------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ccc------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 111 1223368999999997666666666666662 2222221 2 466779999999999999999999998
Q ss_pred ccc
Q 001220 680 RKS 682 (1121)
Q Consensus 680 r~~ 682 (1121)
-..
T Consensus 163 ~l~ 165 (203)
T KOG0131|consen 163 YLC 165 (203)
T ss_pred hhc
Confidence 877
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.5e-09 Score=120.09 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=110.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccCCCCc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG 608 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~rg 608 (1121)
..|||| ++|||++|.+.|+++|++.+|++-+ +-|||||+|.+.+||.+|++.|+...+. .||-|.++--..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 469999 9999999999999999999999855 6799999999999999999999998775 677775531111
Q ss_pred cccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee--eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 609 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV--TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 609 ~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f--~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
-+||=+.+.+.+.+.|..=|..||.+-.+.+ ..-..+++ +|||++.++|..|+..||+....
T Consensus 78 -----------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 78 -----------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred -----------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 1999999999998888887777776666533 12237888 99999999999999999996654
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=98.90 E-value=5.9e-09 Score=85.40 Aligned_cols=60 Identities=28% Similarity=0.466 Sum_probs=56.0
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccC----ceEEEEecCHHHHHHHHHhhcCCce
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK----GFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~r----gfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
+|||+||+.+.+++||++.|.+||++..+.+.+.+ |||||+|.+.++|.+|++.|+|..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 48999999999999999999999999999988755 9999999999999999999999654
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.90 E-value=1.9e-09 Score=117.72 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=108.3
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccCCCCccccc
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVING 612 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~rg~~~G 612 (1121)
+|+||||+..+++.+|+.+|++||++-.--+ .|+|+||.-++-.-|++|++.|.|-++- -|.+--+ +.|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI--vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS--ksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI--VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS--KSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee--ecccceEEeecccccHHHHhhcccceecceEEEEEec--ccc-----
Confidence 7999999999999999999999999876555 4699999999999999999999998775 3443322 222
Q ss_pred eeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhh
Q 001220 613 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 613 v~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
.+.+-.|.||||++.-.-+|+-.-|.+.+-.-.+.+ .++..+|-|+-.|||..|.++|+..
T Consensus 75 --sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdi----vkdy~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 75 --SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI----VKDYAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred --CCCccccccCCCCccccCHHHhhhhcccCCceeeee----ecceeEEEEeeccchHHHHhccccc
Confidence 458889999999999999999888888665544433 5789999999999999999998764
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=101.08 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=90.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec-
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD- 601 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r- 601 (1121)
.+.||||||+.++++++|.++|..||++..|.+.. .||||||+|.+.++|..|++.|+|..+. +|+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 79999999999999999999999999998888743 6699999999999999999999988664 555532
Q ss_pred -ccCCCCcc-----------cccee--ccccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001220 602 -VGLGTKGV-----------INGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 647 (1121)
Q Consensus 602 -~~~g~rg~-----------~~Gv~--~~~s~~LwVG~iss~~~keELf~E~~kag~kgp 647 (1121)
.+...... ..+.. ......+++++....+.++++...+...+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVR 254 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccccccee
Confidence 21111111 00100 127889999999999999999999999886643
No 34
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.89 E-value=4e-09 Score=114.63 Aligned_cols=123 Identities=9% Similarity=-0.018 Sum_probs=84.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccCC
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 605 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 605 (1121)
.++||||||+.+++|+||++.|+.||+|++|.+.. .+|||||+|++.++|..|+. |+|..++ +|..++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~-- 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY-- 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC--
Confidence 68999999999999999999999999999999975 47999999999999999995 9999876 55555431
Q ss_pred CCccccceeccccceEEEccCCCc-chhHHHHHhhhccccc-CC--c-eeeccCCCcccc
Q 001220 606 TKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYK-GP--Y-MVTDLSCEGALL 660 (1121)
Q Consensus 606 ~rg~~~Gv~~~~s~~LwVG~iss~-~~keELf~E~~kag~k-gp--v-~f~Dl~ek~~Lp 660 (1121)
.- ..+...-....-.+++-... ...++++.||-+-|+. +. + .-+.|.++|.+-
T Consensus 81 -~~-p~~~~~~~~~~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~s 138 (260)
T PLN03120 81 -QL-PPEALAPLSSNSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLT 138 (260)
T ss_pred -CC-CcccccccccccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchH
Confidence 00 00000000000122222222 2347999999987732 11 1 235677777765
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.83 E-value=8.1e-09 Score=116.24 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=63.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCce------eEEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS------WRVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~------~RI~F~ 600 (1121)
+.+||||||+.++||+||+++|++||.|+.+.+.+. ||||||+|.+.+||++|++.|+|..+ .+|+++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 568999999999999999999999999999998653 59999999999999999999999854 377877
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
+..
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 663
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=3.1e-08 Score=117.67 Aligned_cols=149 Identities=18% Similarity=0.166 Sum_probs=117.3
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW- 595 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 595 (1121)
|-+..++++ |||-||.-+.|.++|+..|..+|.|-++.+.- +.|||||+|.+.++|..|++.|||+.+-
T Consensus 509 a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 509 AEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 355566666 99999999999999999999999999997743 2299999999999999999999998774
Q ss_pred ---EEEEecccCCCCccccceec---cccceEEEccCCCcchhHHHHHhhhcccccCCceee---c-cCCCccccccccC
Q 001220 596 ---RVKFMDVGLGTKGVINGVAV---GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---D-LSCEGALLMEFRT 665 (1121)
Q Consensus 596 ---RI~F~r~~~g~rg~~~Gv~~---~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~---D-l~ek~~LpVEF~t 665 (1121)
.++|.. ....+-. |.-. ..+..|||=||+=+.++.|+..=+.+||.+-.+++. + ..-++..+|||-|
T Consensus 588 H~l~lk~S~--~k~~~~~-gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 588 HKLELKISE--NKPASTV-GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred ceEEEEecc--Ccccccc-ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 566665 1111111 1111 256799999999999999999999999876666552 2 2235668999999
Q ss_pred HHHHHHHHHHHhh
Q 001220 666 PEEATTAMAHLRQ 678 (1121)
Q Consensus 666 ~edA~~A~~~l~~ 678 (1121)
+.||.+||.+|-.
T Consensus 665 ~~ea~nA~~al~S 677 (725)
T KOG0110|consen 665 PREAKNAFDALGS 677 (725)
T ss_pred cHHHHHHHHhhcc
Confidence 9999999998863
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.2e-08 Score=107.62 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=65.3
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc----eeEEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF----SWRVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~----~~RI~F~r 601 (1121)
-++.|=|-||+.+++|.||+++|.+||+|..|.+++ .||||||.|.+.+||++|++.|+|.- +.|||+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 355699999999999999999999999999999974 79999999999999999999999983 33999998
Q ss_pred cc
Q 001220 602 VG 603 (1121)
Q Consensus 602 ~~ 603 (1121)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 73
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.75 E-value=1.9e-08 Score=120.23 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=59.5
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
..++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|++.++|.+|++.|+|..+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357999999999999999999999999999999864 6899999999999999999999998765
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.73 E-value=4.3e-08 Score=104.39 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=116.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEE-eccCc------eEEEEecCHHHHHHHHHhhcCCce-------eEE
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKG------FALVEYINIIDAIRAREYIRNHFS-------WRV 597 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~-~~~rg------fAFVeF~~i~DAv~A~~~L~G~~~-------~RI 597 (1121)
+-|+|||..|+.||-..||--+|.+|---|.-.+ +.+|+ +|||.|.+..+|++|+++|+|-+. .||
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4599999999999999999999999977775443 34555 999999999999999999999864 299
Q ss_pred EEecccC--------CCCc-------------------------------------------------------------
Q 001220 598 KFMDVGL--------GTKG------------------------------------------------------------- 608 (1121)
Q Consensus 598 ~F~r~~~--------g~rg------------------------------------------------------------- 608 (1121)
+|+++.. |+-|
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9997741 1100
Q ss_pred --------cccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 609 --------VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 609 --------~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.-+|-....|..|+|.+.++..+.|||..=+..+.-+--..+..-..--.+++||+.+|.|..||-||+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 012222347899999999999999999888777543333233333334456789999999999999999987
Q ss_pred cccCC
Q 001220 681 KSRSN 685 (1121)
Q Consensus 681 ~~rs~ 685 (1121)
+.-+.
T Consensus 273 ~s~~d 277 (284)
T KOG1457|consen 273 LSSSD 277 (284)
T ss_pred ecccc
Confidence 65443
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.4e-08 Score=109.55 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=72.0
Q ss_pred eeeecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhc
Q 001220 517 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 590 (1121)
Q Consensus 517 ~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~ 590 (1121)
+|--.+||-|.+ -|=|+||||-|..+.+|+.|+.+|++||+|+.|.+++ ++|||||+|++.+|-..|.+..+
T Consensus 87 ~wdP~~dp~a~g--DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 87 LWDPNNDPNAIG--DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred hcCCCCCCcccC--CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 577889999988 8999999999999999999999999999999999864 79999999999999999999999
Q ss_pred CCcee
Q 001220 591 NHFSW 595 (1121)
Q Consensus 591 G~~~~ 595 (1121)
|..+-
T Consensus 165 G~~Id 169 (335)
T KOG0113|consen 165 GIKID 169 (335)
T ss_pred Cceec
Confidence 98774
No 41
>PLN03213 repressor of silencing 3; Provisional
Probab=98.70 E-value=2.8e-08 Score=114.08 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=61.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCH--HHHHHHHHhhcCCcee----EEEEecc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINI--IDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~--~rgfAFVeF~~i--~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.-.||||||+.+|+++||+..|..||.|.+|.+.+ .||||||+|... .++.+|+..|+|.... ||.=+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 45899999999999999999999999999999877 899999999987 6899999999998643 4544444
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.68 E-value=8.1e-08 Score=79.08 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=56.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+|+|++|+.++++++|+..|.+||+|..+.+... +|+|||+|.+.++|..|++.|+|..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4899999999999999999999999999999863 799999999999999999999997643
No 43
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.68 E-value=4.8e-08 Score=81.51 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=42.0
Q ss_pred HHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 550 IRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 550 L~~~F~~fGpLe~v~~~~~r-gfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
|..+|++||+|++|.+.+.+ ++|||+|.+.+||..|++.|+|..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999999999999976 99999999999999999999998764
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=3e-08 Score=98.44 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=78.7
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
..+-...||.||||||+--++|+.|-++|+++|+|..|.+ ..+=||+||+|-..+||.+|++++.|+++=
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 3455678999999999999999999999999999999997 347899999999999999999999999763
Q ss_pred EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhc
Q 001220 596 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYK 641 (1121)
Q Consensus 596 RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~k 641 (1121)
||++- . ||+.|.-.| -|.+--+.+||.-.+++.
T Consensus 109 r~D~D-~-----GF~eGRQyG-------RG~sGGqVrde~r~d~D~ 141 (153)
T KOG0121|consen 109 RIDWD-A-----GFVEGRQYG-------RGKSGGQVRDEYRTDYDP 141 (153)
T ss_pred eeecc-c-----cchhhhhhc-------CCCCCCeechhhhhhcCc
Confidence 66643 2 344443322 122333456666666655
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.67 E-value=1.8e-07 Score=99.57 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=126.6
Q ss_pred ccccCCceEEeccCCCccCHHHHHH----HhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRF----QIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----R 596 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~----~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 596 (1121)
..+.++.+|||-||...+-.+||+. +|+.||.|-+|..+. -||=|||.|.++.-|-.|++.|+|.... |
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4456667999999999999999999 999999999999873 8999999999999999999999998665 8
Q ss_pred EEEeccc--CCCC-----------------------ccccce----------------eccccceEEEccCCCcchhHHH
Q 001220 597 VKFMDVG--LGTK-----------------------GVINGV----------------AVGSCFHVYVGNIPNQWAKDEI 635 (1121)
Q Consensus 597 I~F~r~~--~g~r-----------------------g~~~Gv----------------~~~~s~~LwVG~iss~~~keEL 635 (1121)
|-|+... +.+| --.||- ...+++.|++-+|++....|.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 8888543 2222 012221 1358999999999999999988
Q ss_pred HHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcccc
Q 001220 636 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSR 683 (1121)
Q Consensus 636 f~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~r 683 (1121)
..-+..+.-+..+.+.. .-.+.++|||++-..|..|+-+|++-++-+
T Consensus 164 ~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred HHHHhhCcccceeEecc-CCCceeEEecchhhhhHHHhhhhccceecc
Confidence 88888877666655544 257889999999999999999999988654
No 46
>smart00360 RRM RNA recognition motif.
Probab=98.67 E-value=6.3e-08 Score=78.88 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=52.9
Q ss_pred eccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 538 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 538 VGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
|+||+.+++++||+..|+.||+|+.+.+... +|||||+|.+.++|..|++.|+|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999998764 579999999999999999999986543
No 47
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.3e-08 Score=108.02 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=77.7
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.-|.||||.|..+|+|.-|.++|-.||.|.+|.+ .+-||||||+|+..+||.+|++.|++..++ ||.|++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3589999999999999999999999999999987 248999999999999999999999999876 999998
Q ss_pred ccCCCCccccceeccccceEEEccCCCcchhHHHHHhhh
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESY 640 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~ 640 (1121)
|- | +..++. .+.|++|+-|.-..
T Consensus 89 P~---k-----ikegsq--------kPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 89 PE---K-----IKEGSQ--------KPVWADDDWLKKQQ 111 (298)
T ss_pred Cc---c-----ccCCCC--------CCcccCcHHHHHhc
Confidence 81 2 112333 56677777776554
No 48
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=4.7e-08 Score=94.23 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=58.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
++-|||-||+-++|.+|.-++|++||+|.+|++=. -||.|||-|+|+.||+.|++-|.|..++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 67799999999999999999999999999999843 8999999999999999999999996543
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=2.5e-08 Score=113.33 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=67.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-------EEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVK 598 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~ 598 (1121)
...++||||.|+-.+||.|+++.|.+||-||++.+.+ +||||||-|..-+-|+.|+++|+|+... -||
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5678999999999999999999999999999999976 8999999999999999999999999643 799
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
|+|.
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 9998
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=8e-08 Score=104.55 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=64.3
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 600 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~ 600 (1121)
-.|.||||||.+..||++|+..|++||+|-.|++|+.+|||||-|+.-|-|-+|+-.|+|+.+. .||..
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999876 45543
No 51
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.61 E-value=9.9e-08 Score=102.93 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~ 600 (1121)
...|+||||++.+||.||++.|+.||+|++|.+.+ .++||||+|++.++|..|+ .|+|..+. +|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 46899999999999999999999999999999987 4589999999999999998 79999876 44444
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.5e-07 Score=107.04 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=118.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccCCC
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGT 606 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~ 606 (1121)
-+++|.|+.-+.++.+|...|..||+|.++.+-+ .++|+||+|.+.++|..|++.|+|+... ++...+.+-+.
T Consensus 168 t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 168 TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred hhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch
Confidence 3678999999999999999999999999999853 6999999999999999999999999764 22222221000
Q ss_pred ------C-----ccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHH
Q 001220 607 ------K-----GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 607 ------r-----g~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A 672 (1121)
+ -......--...+|||=|+....+.|+|+..+..++.+....+ .+ ...++..+|||.+.|||..|
T Consensus 248 e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A 327 (369)
T KOG0123|consen 248 EREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKA 327 (369)
T ss_pred hhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHH
Confidence 0 0011111126789999999999999999999999886666533 22 77889999999999999999
Q ss_pred HHHHhhhccc
Q 001220 673 MAHLRQHRKS 682 (1121)
Q Consensus 673 ~~~l~~~r~~ 682 (1121)
|..|++..++
T Consensus 328 ~~~~n~~~i~ 337 (369)
T KOG0123|consen 328 MTEMNGRLIG 337 (369)
T ss_pred HHhhChhhhc
Confidence 9999998877
No 53
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=5.8e-08 Score=102.53 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=61.9
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
-.|-|-||..-++.+||+.+|++||.|-+|.|- .+||||||-|.+-.||++|+++|||..+- ||.|++=
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 368999999999999999999999999999983 28999999999999999999999998774 6666654
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=3.5e-07 Score=99.20 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=112.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 600 (1121)
.-+|||..|+-..|..|||.+|.+||.|-.-++. -.||-+||-|...++|+.|++.|+|+.+- -|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 3589999999999999999999999998755542 28999999999999999999999999753 78887
Q ss_pred cc-c-------------------C------CCCc---------------------cccceec-------cccceEEEccC
Q 001220 601 DV-G-------------------L------GTKG---------------------VINGVAV-------GSCFHVYVGNI 626 (1121)
Q Consensus 601 r~-~-------------------~------g~rg---------------------~~~Gv~~-------~~s~~LwVG~i 626 (1121)
.- . . ..|+ .|.|.+. +.---|+|=+.
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 32 1 0 0111 1222221 23455888899
Q ss_pred CCcchhHHHHHhhhcccccCCce-eecc---CCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 627 PNQWAKDEILHESYKVVYKGPYM-VTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 627 ss~~~keELf~E~~kag~kgpv~-f~Dl---~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
++...+--|..=|.-||....+. +.|+ .+|+..+|-.-+-|||+-||+.||+.|.|
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 98866654444444555444442 2454 47899999999999999999999999988
No 55
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=8.4e-08 Score=116.18 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=119.7
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCceeEEEEecc
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDV 602 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~ 602 (1121)
|=+-+++.|++|||...+++.+|+..|+.||.++.|-|-. .--||||.|.+..-|..|+-.|.|..+..-. .++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~-~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT-HRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc-ccc
Confidence 3456799999999999999999999999999999999865 3569999999999999999999998776210 011
Q ss_pred cCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 603 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 603 ~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
++|. + .++++..+|||+..+......|..||+-||.+..+.+-. .+-+++|.|++++-|..||++|++.-+|
T Consensus 446 glG~-----~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 446 GLGQ-----P-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccc-----c-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCC
Confidence 2222 1 377999999999999999999999999866555433322 3567899999999999999999998777
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=3.6e-07 Score=101.56 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=63.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~---~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~ 602 (1121)
-|.|+|.||+=.-.|-||+..|++||+|-+|-+. | +|||.||-|+|++||.+|++.|.|+.+- +||+-+-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4899999999999999999999999999999863 4 9999999999999999999999999884 7887644
No 57
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=8e-05 Score=86.84 Aligned_cols=112 Identities=9% Similarity=0.058 Sum_probs=74.5
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEecccCCCCccccceecccc
Q 001220 545 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDVGLGTKGVINGVAVGSC 618 (1121)
Q Consensus 545 vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~~~g~rg~~~Gv~~~~s 618 (1121)
.+.+|=+.+|...|+ +++++...=-=-|+.|.+. +..-++.+-|.... |-.|+|. |.+...
T Consensus 21 Lt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~--~~W~~~~~~Gal~lVkD~~~rsyFlrl----------~di~~~ 87 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDP--NHWNKTGLCGALCLVKDNAQRSYFLRL----------VDIVNN 87 (569)
T ss_pred cchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCCh--hhhccccCceeEEEeeccccceeeeEE----------eeecCc
Confidence 677888899999999 8888743111114556655 56666777774332 5566655 445566
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCcccc-ccccCHHHHHHHHHHHhhhc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~Lp-VEF~t~edA~~A~~~l~~~r 680 (1121)
+.|| +.||...|+-.. ...-|..|+.+++.- +-|.+.+||..=.+++..+-
T Consensus 88 rliW---------dqELY~nf~y~q--~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 88 RLIW---------DQELYQNFEYRQ--PRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred eeee---------hHHhhhhceecc--CccceeeeccccceeeecccCHHHHHHHHHHHHHHh
Confidence 7887 678888887733 333444555555544 89999999999988887643
No 58
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=3.8e-07 Score=108.45 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=60.2
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEE---------eccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF---------FPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~---------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
-+.|||||||.+.++|..|...|++||||-+|.+ .+.|.++||.|.+-.||.+|+++|||.-+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 4789999999999999999999999999999997 358999999999999999999999998765
No 59
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=2.2e-06 Score=102.87 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=19.2
Q ss_pred cccceeeecccccCCccceeEEeec
Q 001220 970 QLLQYQWQGALCKSGVHYCTIYAQR 994 (1121)
Q Consensus 970 ~~i~~~WqG~l~kSganyCtIl~s~ 994 (1121)
.-=++-|.-..+..-..+|...=.+
T Consensus 625 ~Mrr~nW~kI~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 625 PMRRFNWSKIVPRDLSENCFWVKVN 649 (1102)
T ss_pred ccccCCccccCccccCccceeeecc
Confidence 4457889999999999999665443
No 60
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=1.9e-06 Score=100.64 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=117.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.+|+|++|+.+++.++|++.|+.+|||..-.+. ..|||+||-|--.+|+.+|...+.++.+. +++++-..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999965553 37999999999999999999999997653 67777321
Q ss_pred --C-----CCCcc----ccc------eeccccceEEEccCCCcchhHHHHHhhhcccccCCcee---eccCCCccccccc
Q 001220 604 --L-----GTKGV----ING------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEF 663 (1121)
Q Consensus 604 --~-----g~rg~----~~G------v~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f---~Dl~ek~~LpVEF 663 (1121)
. |.+-. +.- -...+--.|.|-|.|=+..+++|..=|-.+|.+..+.+ .|..-.+.+||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 1 11000 000 00123557899999999999999999999887777644 3444458999999
Q ss_pred cCHHHHHHHHHHHhhhccc
Q 001220 664 RTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 664 ~t~edA~~A~~~l~~~r~~ 682 (1121)
-...||..||+.+|++.+.
T Consensus 166 k~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKID 184 (678)
T ss_pred eeHHHHHHHHHhccCceec
Confidence 9999999999999998876
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.7e-06 Score=94.36 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=64.0
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 599 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 599 (1121)
..|+||||-|...-+|+|++.+|..||.||.+++.+ +||+|||-|..-.||-.|+++|.|+... -|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 469999999999999999999999999999999975 7999999999999999999999998643 5666
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+|-
T Consensus 98 ADT 100 (371)
T KOG0146|consen 98 ADT 100 (371)
T ss_pred ccc
Confidence 655
No 62
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=1.2e-06 Score=102.39 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVK 598 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~ 598 (1121)
.+++.|||=||++.|++++|+.+|+.||+|..|+..+ .+|-.||+|-|++||++|.++|++..+. ||+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999999999888 9999999999999999999999999876 777
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=98.15 E-value=4.7e-06 Score=73.25 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHhh----ccCCcceEE-E-e-------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 547 EAHIRFQID----RFGPLEHFF-F-F-------PIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 547 e~dL~~~F~----~fGpLe~v~-~-~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
++||++.|+ +||.|.+|. + . .+||||||.|.+.+||.+|++.|+|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999985 3 2 15999999999999999999999998654
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.13 E-value=4.6e-06 Score=93.52 Aligned_cols=63 Identities=27% Similarity=0.384 Sum_probs=59.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...||||+|.+.++|.||+..|.+||+|+++.+...+++|||+|..-+-|+.|.+.+-.+.+.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 689999999999999999999999999999999999999999999999999999988776554
No 65
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.06 E-value=1.9e-05 Score=90.11 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=117.4
Q ss_pred CceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc---
Q 001220 533 SKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG--- 603 (1121)
Q Consensus 533 S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~--- 603 (1121)
++-|-|-||-.. ||.+-|.-+|+-||.+-.|.++. .+--|+|.|-|...|.-|++.|+|..+| ||.|.+-+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 688999999877 99999999999999999999876 6789999999999999999999999987 45444321
Q ss_pred C-------------------------CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccC-CCc
Q 001220 604 L-------------------------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEG 657 (1121)
Q Consensus 604 ~-------------------------g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~-ek~ 657 (1121)
+ |+|-+-|+ --+|..|-..+||++++.|++..=+...+...- +|+++. ++.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--~PpsatlHlsnip~svsee~lk~~f~~~g~~vk-afkff~kd~k 453 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK-AFKFFQKDRK 453 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCccccccccc--CCchhheeeccCCcccchhHHHHhhhcCCceEE-eeeecCCCcc
Confidence 1 23322222 237888999999999999999877776543222 566655 789
Q ss_pred cccccccCHHHHHHHHHHHhhhccc
Q 001220 658 ALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 658 ~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++++++.|||+.|.--|..+-.|
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred eeecccCChhHhhhhccccccccCC
Confidence 9999999999999998877776655
No 66
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.03 E-value=1.6e-05 Score=93.33 Aligned_cols=146 Identities=22% Similarity=0.317 Sum_probs=100.8
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe-----
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM----- 600 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~----- 600 (1121)
+.||||||-.+.+|++|+..|+.||+|+.|-.-. .+||+||+|.+.+||+.|.+.|+|.-+- -|++.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3399999999999999999999999999998743 6999999999999999999999995331 12211
Q ss_pred -----------ccc--------CCCCcc-------ccceec--------------c-ccceEE-----EccCCC------
Q 001220 601 -----------DVG--------LGTKGV-------INGVAV--------------G-SCFHVY-----VGNIPN------ 628 (1121)
Q Consensus 601 -----------r~~--------~g~rg~-------~~Gv~~--------------~-~s~~Lw-----VG~iss------ 628 (1121)
|-. +|+-|. +-|.+. + ....+. |.++-+
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 110 122220 111110 0 001111 112111
Q ss_pred -------------------------cchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 629 -------------------------QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 629 -------------------------~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
+-++|++..|+.+.|++-- .+.|-.+-+..+|-|.+.|+|..|...|+|.=
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~h-i~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCH-IFVDKNSAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeE-EEEccCCCceEEEecCcHHHHHHHHHHHhhhh
Confidence 2368899999977654432 55676666999999999999999999999853
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.01 E-value=7.4e-06 Score=88.23 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=50.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhh
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYI 589 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L 589 (1121)
-++|||+|.=...+++|+.-|++||+|....+. ++|||+||-|+|.+-|.+|++..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 379999999999999999999999999976653 59999999999999999998764
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.00 E-value=8.2e-06 Score=91.41 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=97.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHh----hcCCcee------
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREY----IRNHFSW------ 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~----L~G~~~~------ 595 (1121)
.+++|+||.|..+++++.|++.|+.||.+....+. +.|||.||.|.+.+--.+++.. |+|+.+=
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999877664 4899999999976655444433 6665432
Q ss_pred EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee----eccCCCccccccccCHHHHHH
Q 001220 596 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATT 671 (1121)
Q Consensus 596 RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f----~Dl~ek~~LpVEF~t~edA~~ 671 (1121)
|-+..+. .+ -...+.++||+|+.....+++...+..++++..+.+ .....++.-+|.|++-|..-.
T Consensus 85 r~~~~~~---~~-------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQTKV---GR-------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccccc---cc-------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 2221111 00 115789999999999999999999999996655522 336677888999988765443
Q ss_pred H
Q 001220 672 A 672 (1121)
Q Consensus 672 A 672 (1121)
+
T Consensus 155 v 155 (311)
T KOG4205|consen 155 V 155 (311)
T ss_pred e
Confidence 3
No 69
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.99 E-value=1.1e-05 Score=93.95 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=58.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+.+|||||+.+++|++|..+|+..|+|-++++. ..|||||++|.+.++|..|++.|+|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999999999985 38999999999999999999999997654
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.99 E-value=7.4e-06 Score=90.33 Aligned_cols=96 Identities=23% Similarity=0.385 Sum_probs=71.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe--cccCCC
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM--DVGLGT 606 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~--r~~~g~ 606 (1121)
+++-+|.||||.+.-+..||++.|++||++-+--+ .|+||||.|...+||.+|++.|+|+.+- |+.+. -+.+-+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi--vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI--VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeee--ecceeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 46779999999999999999999999999877666 4689999999999999999999998653 44433 222222
Q ss_pred CccccceeccccceEEEccCCCcchhH
Q 001220 607 KGVINGVAVGSCFHVYVGNIPNQWAKD 633 (1121)
Q Consensus 607 rg~~~Gv~~~~s~~LwVG~iss~~~ke 633 (1121)
... .|....-|=-|=..-|+||
T Consensus 154 apg-----mgDq~~cyrcGkeghwskE 175 (346)
T KOG0109|consen 154 APG-----MGDQSGCYRCGKEGHWSKE 175 (346)
T ss_pred CCC-----CCCHHHheecccccccccc
Confidence 211 2334444555556667765
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.93 E-value=2.2e-05 Score=94.25 Aligned_cols=251 Identities=18% Similarity=0.178 Sum_probs=151.1
Q ss_pred ecCCccccccccC-CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001220 520 FDEDPAAMDIFSA-SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--- 595 (1121)
Q Consensus 520 ~~g~p~a~dv~~~-S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 595 (1121)
.++|+++- ... ..-+.||||+-++..++|...|.+||+|..|.+-+.-.-|+|+|.+..||..|++.|+++...
T Consensus 373 V~l~~F~~--~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~p 450 (725)
T KOG0110|consen 373 VKLDAFSQ--AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAP 450 (725)
T ss_pred cccccchh--hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCc
Confidence 45555544 222 356889999999999999999999999999944334445999999999999999999998653
Q ss_pred -EEEEecccCCC--------------C-------------cc------------cccee---ccccceEEEccCCCcchh
Q 001220 596 -RVKFMDVGLGT--------------K-------------GV------------INGVA---VGSCFHVYVGNIPNQWAK 632 (1121)
Q Consensus 596 -RI~F~r~~~g~--------------r-------------g~------------~~Gv~---~~~s~~LwVG~iss~~~k 632 (1121)
+.+-++.++-+ . |. +.-++ ...++ |||-|..=..+.
T Consensus 451 lyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 451 LYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTL 529 (725)
T ss_pred cccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccch
Confidence 22222211100 0 00 00000 01333 899888888999
Q ss_pred HHHHHhhhcccccCCcee---ec----cCCCccccccccCHHHHHHHHHHHhhhccc-------cCCCCCCCCCCCCCcc
Q 001220 633 DEILHESYKVVYKGPYMV---TD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS-------RSNYLPPNTGPANAAM 698 (1121)
Q Consensus 633 eELf~E~~kag~kgpv~f---~D----l~ek~~LpVEF~t~edA~~A~~~l~~~r~~-------rs~~~~~~~~~~~~~~ 698 (1121)
|.++..+++.|..-.+.+ .+ +-..+..||||.++|+|.+|++.|++.+.- .|..-+..++|
T Consensus 530 e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g----- 604 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG----- 604 (725)
T ss_pred hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc-----
Confidence 999999999774333322 11 112388999999999999999999976654 22211112222
Q ss_pred cccCCCCCCC-CcceEEeec---ccccccccccCCCCcccccc--cCCCCCCCCccccccccCCCCccccCccccccccc
Q 001220 699 SQIDGARSVP-AAPIHVDIR---SNRLGNISAGGFGSPHTAPF--HSSQPGFHHATSFTVRPEISSMELSSPRVISENHG 772 (1121)
Q Consensus 699 ~~~d~~~~~P-s~~lwi~~p---~~~~~nlA~~~fGei~rfqi--dFS~p~~~~~~~Fs~Ks~s~s~elvSPsIk~~~he 772 (1121)
++...-.. +++|-=.|| .+.-..-=++.||+|....| . -..+.+-|+.| .+++||+--...-.
T Consensus 605 --K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~F--------v~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 605 --KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGF--------VDFLTPREAKNAFD 673 (725)
T ss_pred --cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhcccee--------eeccCcHHHHHHHH
Confidence 11100011 233444566 33333334567887776655 1 01122344445 57888764322211
Q ss_pred cccCCCCCCCCCCCCCCCCcCCccc
Q 001220 773 AAVQDGHSFQSNWSVSGRTEMPEAG 797 (1121)
Q Consensus 773 ~av~gv~~f~sn~p~PGstevpe~g 797 (1121)
+..++|.| |++.|=|+.
T Consensus 674 -al~STHly-------GRrLVLEwA 690 (725)
T KOG0110|consen 674 -ALGSTHLY-------GRRLVLEWA 690 (725)
T ss_pred -hhccccee-------chhhheehh
Confidence 22266666 666666663
No 72
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=97.88 E-value=4.1e-07 Score=86.23 Aligned_cols=112 Identities=24% Similarity=0.418 Sum_probs=73.9
Q ss_pred eecccccCCccceeEEeecccccccccc-cCCCCCCCCcccccCCcccccccccccccc-CCCCccccccccc-----CC
Q 001220 976 WQGALCKSGVHYCTIYAQREESDICKYT-HDISEPAEWPAKLDMTKRTDFRHVKSTFTS-TPPNKREVCRLVP-----SS 1048 (1121)
Q Consensus 976 WqG~l~kSganyCtIl~s~lds~IC~Ai-~a~sepS~Wps~eD~t~RtDfq~Le~TFSs-tPpkKREV~RLvP-----as 1048 (1121)
|+|.+.|+++..|.+.+.-+..+ |... +.+.+...|+...+..-|.+.+.+.+.... +....++++-+.. +.
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~ 79 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDS 79 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccC
Confidence 99999999999999999876333 4444 667777999999999999998887766653 2233457777665 34
Q ss_pred CCCCcchhcHHHHHhhcCccceeeccchhhHHHHhhhccC
Q 001220 1049 PGDHKGFQDFVSYLKQRECAGVIKIPAVKSIWARLMFILP 1088 (1121)
Q Consensus 1049 ~~D~k~fqDFisyLkqkd~AGViKips~k~~w~rlL~LlP 1088 (1121)
..+...|+.|++||++++|+||+++.....-|-+-|||+|
T Consensus 80 ~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 80 NSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4566799999999999999999999987666678899988
No 73
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.82 E-value=1.9e-05 Score=92.66 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=110.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCceeEEEEe--ccc-
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFM--DVG- 603 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~--r~~- 603 (1121)
.+.+++=-|...+++-||++.|+.+|++++|.+. +.+|-|||+|-|.+--..|+ +|.|+++.-+..+ .+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 3556666788889999999999999999999974 48999999999876655555 9999987622222 111
Q ss_pred ------CCCCcccc-ceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHH
Q 001220 604 ------LGTKGVIN-GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 604 ------~g~rg~~~-Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A 672 (1121)
..+- ... |-.+++-..||||++....+.+.+..=+..|+.++-+.. .| ...++.-+|+|.+.|+|..|
T Consensus 258 eknr~a~~s~-a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 258 EKNRAANASP-ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHhccc-cccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 0000 011 111234444999999999999999999999988877743 33 67899999999999999999
Q ss_pred HHHHhhhc
Q 001220 673 MAHLRQHR 680 (1121)
Q Consensus 673 ~~~l~~~r 680 (1121)
.+.||+.-
T Consensus 337 ~e~lngfe 344 (549)
T KOG0147|consen 337 LEQLNGFE 344 (549)
T ss_pred HHHhccce
Confidence 99999943
No 74
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.81 E-value=2.9e-05 Score=78.28 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=58.3
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 536 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 536 LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
|+|-++-..++|+||...|.-||+|.++-+- -.+|||+|+|+...+|-.|+++|+|..+. .|.|.
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 6899999999999999999999999999862 28999999999999999999999998765 56655
No 75
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=97.78 E-value=2e-05 Score=95.25 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=23.0
Q ss_pred Cchhhhcccc------ccCCccceEEEEeccCCcc
Q 001220 1089 YSQDICSMLS------IAPNSSDCLVALVLPKETN 1117 (1121)
Q Consensus 1089 ~SeEvcs~Ls------l~~d~~eCLIalvlP~e~~ 1117 (1121)
..++||.+++ +..+++|||+++ +|||..
T Consensus 457 ~~~~V~~Aih~~dLk~L~~~~ve~L~r~-lPTe~E 490 (830)
T KOG1923|consen 457 KAKEVMAAIHPLDLKALSLEPVELLQRI-LPTEAE 490 (830)
T ss_pred chHHHHHHhhhccccccCCcHHHHHHhc-CCchHH
Confidence 4578898776 678899999999 999863
No 76
>PHA03247 large tegument protein UL36; Provisional
Probab=97.66 E-value=0.0017 Score=86.63 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 001220 445 GDFSCGRSSMPRDLPNPQMLSP 466 (1121)
Q Consensus 445 ~d~~~~~~s~pr~~~~~~~~s~ 466 (1121)
.||-+|+-|- =|.+-.=+.+|
T Consensus 2171 aDWk~gklS~-tdpLapW~~~p 2191 (3151)
T PHA03247 2171 ADWRHGKLSE-SDPLAPWRAAP 2191 (3151)
T ss_pred hhhccCCCCc-cccchhhhhCC
Confidence 3677777665 44444444555
No 77
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.66 E-value=0.0001 Score=86.95 Aligned_cols=161 Identities=20% Similarity=0.282 Sum_probs=106.6
Q ss_pred ecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 520 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 520 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
++..+++-+|---.++++||+|+...+++.++++.+-||+|..|.++. ++||||-||.+.-..-.|+..|+|..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 478888888888899999999999999999999999999999998753 78999999999999999999999998
Q ss_pred ee--EEEEecccCCCCcccccee-----c--cccceEEEccCCC-------cchhHHHH-------------Hhhhcccc
Q 001220 594 SW--RVKFMDVGLGTKGVINGVA-----V--GSCFHVYVGNIPN-------QWAKDEIL-------------HESYKVVY 644 (1121)
Q Consensus 594 ~~--RI~F~r~~~g~rg~~~Gv~-----~--~~s~~LwVG~iss-------~~~keELf-------------~E~~kag~ 644 (1121)
++ .+-..+.-.|++-..-+.. + -+....=-++|+. .+++|||. .|+-+++.
T Consensus 356 lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~ 435 (500)
T KOG0120|consen 356 LGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA 435 (500)
T ss_pred hcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc
Confidence 76 2222221111111100000 0 0111111122221 23343333 33334442
Q ss_pred cCCcee-------eccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 645 KGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 645 kgpv~f-------~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
+.-+.+ .....-+-.||||.++||+..||+.|.|..
T Consensus 436 v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 436 VRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK 478 (500)
T ss_pred eeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce
Confidence 211111 113345778999999999999999999865
No 78
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.00043 Score=81.69 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=111.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
+-=.|.|-||+=...+.||.-+|++||.+..|.+-+ =.|||||.|.+.-||..|++.++|+.+. -|+|+=.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 355799999999999999999999999999999842 3599999999999999999999999764 3444421
Q ss_pred c-----------------------------CCCCcc-------------ccc-------------------------eec
Q 001220 603 G-----------------------------LGTKGV-------------ING-------------------------VAV 615 (1121)
Q Consensus 603 ~-----------------------------~g~rg~-------------~~G-------------------------v~~ 615 (1121)
. -|..+. .+| ...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 1 000000 111 110
Q ss_pred --------------cccceEEEccCCCcchhHHHHHhhhcccccCCce-eec---cCCCccccccccCHHHHHHHHHHH
Q 001220 616 --------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTD---LSCEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 616 --------------~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~-f~D---l~ek~~LpVEF~t~edA~~A~~~l 676 (1121)
+.-+.|+|-|++=..++|||-.++.+||.+.-.. +++ ...++++||-|.|.++|..+.+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 1227899999999999999999999999555442 222 678899999999999999988776
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.58 E-value=1e-05 Score=84.59 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=60.1
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.+-|--+|||+|+-+.||.||-..|+.||.|.+|-+.| ++||||.-|+|-+--|-|++.|+|-.+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 44566799999999999999999999999999999865 7899999999999999999999997765
No 80
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.57 E-value=6.5e-05 Score=63.20 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=53.4
Q ss_pred EEEccCCCcchhHHHHHhhhcccccCCcee-e--ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 621 VYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 621 LwVG~iss~~~keELf~E~~kag~kgpv~f-~--Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|||||++..++++||..-+..+|....+.+ . ....++.++|+|++.+||..|++.|+++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 799999999999999999999887766543 2 2556788999999999999999999998754
No 81
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.46 E-value=0.00025 Score=80.58 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=98.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--------------E
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------------R 596 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--------------R 596 (1121)
.+|--+-|-+|-.+|+|+||-+..+.||+|--|+.-+-+--|+|||+||+-|+.++..---..+. +
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 45667889999999999999999999999999999998889999999999999987654333322 3
Q ss_pred EEEecccCCCCccccceeccccceEEEccCCCc--chhHHHHHhhhcccccCCceeeccC-CCccccccccCHHHHHHHH
Q 001220 597 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ--WAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAM 673 (1121)
Q Consensus 597 I~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~--~~keELf~E~~kag~kgpv~f~Dl~-ek~~LpVEF~t~edA~~A~ 673 (1121)
|+-++ -...++++.|.+-=+-++ ++-|=|..=....|+.-. +..+. .-=-+.|||+++|-|.+|+
T Consensus 109 i~R~g----------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR--IvIfkkngVQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 109 IERPG----------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLR--IVIFKKNGVQAMVEFDSVEVAQRAK 176 (494)
T ss_pred hccCC----------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEE--EEEEeccceeeEEeechhHHHHHHH
Confidence 33221 122457888887777665 344444333333333333 22221 2234789999999999999
Q ss_pred HHHhhhc
Q 001220 674 AHLRQHR 680 (1121)
Q Consensus 674 ~~l~~~r 680 (1121)
+.||+--
T Consensus 177 ~alNGAD 183 (494)
T KOG1456|consen 177 AALNGAD 183 (494)
T ss_pred hhccccc
Confidence 9999865
No 82
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.45 E-value=0.00022 Score=75.98 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=61.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhcc-CCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRF-GPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~f-GpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
..-+||+.++.+.-|.++...|..| |.+..|+..| ++|||||||++.+.|.-|-+.|++=.+. ...||-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4458999999999999999999999 8999998854 7899999999999999999999987554 677776
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 129 p 129 (214)
T KOG4208|consen 129 P 129 (214)
T ss_pred c
Confidence 6
No 83
>PHA03247 large tegument protein UL36; Provisional
Probab=97.42 E-value=0.0019 Score=86.18 Aligned_cols=12 Identities=42% Similarity=0.745 Sum_probs=5.3
Q ss_pred eeecccccCCcc
Q 001220 975 QWQGALCKSGVH 986 (1121)
Q Consensus 975 ~WqG~l~kSgan 986 (1121)
-|-|.+.-++++
T Consensus 2962 ~~~~~~~~~~~~ 2973 (3151)
T PHA03247 2962 PWLGALVPGRVA 2973 (3151)
T ss_pred ccccccCccccc
Confidence 344444444443
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.41 E-value=0.00059 Score=78.39 Aligned_cols=147 Identities=19% Similarity=0.238 Sum_probs=109.7
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCce-EEEEecCHHHHHHHHHhhcCCcee------EEEEeccc---
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFSW------RVKFMDVG--- 603 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgf-AFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~~--- 603 (1121)
...|+|+-.-||=+=|-..|++||.+..+..|. .-|| |+|.|.|..-|-.|+-+|||..+. ||.|..-.
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 457899999999999999999999999988775 7777 999999999999999999999874 77775221
Q ss_pred -----------------CC------------C----------Cccc-----cceec-c----c--cceEEEccCCCc-ch
Q 001220 604 -----------------LG------------T----------KGVI-----NGVAV-G----S--CFHVYVGNIPNQ-WA 631 (1121)
Q Consensus 604 -----------------~g------------~----------rg~~-----~Gv~~-~----~--s~~LwVG~iss~-~~ 631 (1121)
.| + -+.+ .+.++ | + ++.|.|-+.-.. ++
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 12 0 0010 00011 1 2 577788777665 77
Q ss_pred hHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 632 KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 632 keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.|-||.=|..+|..-.+.+. ..-++-++|+|-..-.|.-||.||.+++.=
T Consensus 312 ~d~LftlFgvYGdVqRVkil-~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~ 361 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKIL-YNKKDNALIQMSDGQQAQLAMEHLEGHKLY 361 (492)
T ss_pred hhHHHHHHhhhcceEEEEee-ecCCcceeeeecchhHHHHHHHHhhcceec
Confidence 77787777765544443332 355688999999999999999999998864
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.38 E-value=0.00012 Score=78.84 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=57.1
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
..++-+|||.||+++++|++|+.+|.+|--..-+++.. +---|||+|++|+.|-+|+.-|||..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46788999999999999999999999998877777643 444799999999999999999999754
No 86
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=0.00016 Score=75.54 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=55.9
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.||||+.++..+|.||+.+|.+++.+-.+= +.....+.+||||+.+.||.-|..+|+++++=
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvW-vArnPPGfAFVEFed~RDA~DAvr~LDG~~~c 73 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVW-VARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC 73 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEE-EeecCCCceEEeccCcccHHHHHhhcCCcccc
Confidence 67899999999999999999999988555542 44478899999999999999999999998843
No 87
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.33 E-value=0.0003 Score=70.74 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=59.3
Q ss_pred cceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 611 NGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 611 ~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.|-+--.++.||||+++...+.|+|..-|.+++.+..+.+ .| ...++.++|||++.|+|..|++.|+++.+.
T Consensus 27 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3333347889999999999999999999999887666644 33 346889999999999999999999987655
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.29 E-value=0.0003 Score=60.40 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=48.1
Q ss_pred EEEccCCCcchhHHHHHhhhcccccCCceeec---cCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 621 VYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 621 LwVG~iss~~~keELf~E~~kag~kgpv~f~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
|||+||++.+++++|.+.+..++.+..+.+.- ...++.++|||.+.+||.+|++.++++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~ 63 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKE 63 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcE
Confidence 79999999999999999999988766654422 2347999999999999999999988543
No 89
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.29 E-value=0.00032 Score=73.77 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=59.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcce---EEE----eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEH---FFF----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~---v~~----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
+-+|+||||.+.+.|.-|-..|+.||.|-+ +.- -.++|||||+|++.+-+.+|++.|+|+.++ ++.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 368999999999999999999999999976 221 137899999999999999999999999887 56665
No 90
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00057 Score=77.38 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=72.7
Q ss_pred eeeecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhc
Q 001220 517 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 590 (1121)
Q Consensus 517 ~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~ 590 (1121)
+.-.=||----||.+|-|-|||-.|-|-++.+||+-.|++||+|.+--+.+ +--||||||+|-++.++|.=-|+
T Consensus 223 iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 223 ILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred HHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc
Confidence 444567777789999999999999999999999999999999999887765 34699999999999999999999
Q ss_pred CCcee--E--EEEecc
Q 001220 591 NHFSW--R--VKFMDV 602 (1121)
Q Consensus 591 G~~~~--R--I~F~r~ 602 (1121)
+-.+= | |.|.-+
T Consensus 303 NvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 303 NVLIDDRRIHVDFSQS 318 (479)
T ss_pred ceeeccceEEeehhhh
Confidence 96553 4 555533
No 91
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.06 E-value=0.00055 Score=79.72 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=49.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cC--ceEEEEecCHHHHHHHHHhh
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IK--GFALVEYINIIDAIRAREYI 589 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~r--gfAFVeF~~i~DAv~A~~~L 589 (1121)
...|||+||+.++++++|++.|..||+|....|.. .+ .||||+|++...+..|+++=
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 33499999999999999999999999999887753 22 89999999999999888764
No 92
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.91 E-value=0.00082 Score=72.89 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=55.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.+.+||||+.-++|.+++++.|+-||.|..|++- .++|||||+|.+.+.++.|.. |+|..+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 5789999999999999999999999999877762 379999999999999999999 9998654
No 93
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.89 E-value=0.088 Score=65.05 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=52.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
..|+.||||+|+-.+...+|-+=++.||.+.- +.-+..++.+||=-+.-.||..|+..|+-..
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqS--i~li~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQS--IILIPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhccccee--EeeccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 37999999999999999988877777665555 4556779999999999999999999998543
No 94
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.83 E-value=0.0065 Score=70.63 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=114.2
Q ss_pred cCCccccccccCCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 521 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 521 ~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~-~fGpLe~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
+|.++|.| |.+||-||+-++.=.||..+|. +-|.|+-|-++ .+||+|.|||++.+-+..|.+-|+-..+
T Consensus 37 ~gn~~~r~-----R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 37 GGNVAARD-----RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred CCCccccc-----ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 45555554 6699999999999999999995 67899877754 3899999999999999999999876543
Q ss_pred e-------------EEEEeccc----------CCCCcc---------ccceec---------------------------
Q 001220 595 W-------------RVKFMDVG----------LGTKGV---------INGVAV--------------------------- 615 (1121)
Q Consensus 595 ~-------------RI~F~r~~----------~g~rg~---------~~Gv~~--------------------------- 615 (1121)
- |-+++|.. ++.++- ++|+-+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 2 22232221 111100 111111
Q ss_pred ---------------------cccceEEEccCCCcchhHHHHHhhhcccccCCcee---eccCCCccccccccCHHHHHH
Q 001220 616 ---------------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEFRTPEEATT 671 (1121)
Q Consensus 616 ---------------------~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f---~Dl~ek~~LpVEF~t~edA~~ 671 (1121)
--+..++|++|-=.+--+.|..=+.-+++..-+.| +..-+++...+||..+-||.+
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHH
Confidence 13456788988888888888888888888777766 336788899999999999999
Q ss_pred HHHHHhhhccc
Q 001220 672 AMAHLRQHRKS 682 (1121)
Q Consensus 672 A~~~l~~~r~~ 682 (1121)
|..-|.++-.+
T Consensus 272 aIsml~~~g~~ 282 (608)
T KOG4212|consen 272 AISMLDRQGLF 282 (608)
T ss_pred HHHhhccCCCc
Confidence 99999875433
No 95
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.80 E-value=0.0014 Score=71.89 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=54.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcc------eEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE------HFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe------~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.-.=.++-|.||++|+.+.|...|.+|=.-- +=+.-..+||.||-|+++.|+++|++.|+|+-++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 3355799999999999999999999996533 3333458999999999999999999999998665
No 96
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.75 E-value=0.0013 Score=81.04 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=69.3
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEecc
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 602 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~ 602 (1121)
-.+++..||||.|++-..-.-|..+|.+||+|+.|.......||+|.|++..-|..|++.|.|..++ ||.|+..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 5678999999999999999999999999999999999889999999999999999999999999876 7888855
No 97
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.74 E-value=0.015 Score=68.79 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=38.1
Q ss_pred HHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCC
Q 001220 547 EAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH 592 (1121)
Q Consensus 547 e~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~ 592 (1121)
|.||-..|+++-+=.-|-.|- +.++|=.+|.+++||..=++.++-+
T Consensus 92 dqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHHH
Confidence 889999999999765555555 8899999999999998888777764
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=96.74 E-value=0.0025 Score=52.13 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.0
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceeec--cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 620 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 620 ~LwVG~iss~~~keELf~E~~kag~kgpv~f~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
.|||++++..++.+||.+-+..++....+.+.. ...++.+++||.+.++|..|++.|+++..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 389999999999999999998877554433321 12358999999999999999999987553
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.63 E-value=0.003 Score=75.02 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=116.1
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhcc-----------C-CcceEEEeccCceEEEEecCHHHHHHHHHhhcC---
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF-----------G-PLEHFFFFPIKGFALVEYINIIDAIRAREYIRN--- 591 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~f-----------G-pLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G--- 591 (1121)
++.--..+++|||++.+.++|...+..|..= | ++.+|.+-..++|||++|+.+.+|.+|+ .++|
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhh
Confidence 3444557899999999999999999888754 2 3667777779999999999999999985 3444
Q ss_pred --CceeEEEEeccc--------CC---CCccccceecc--ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---
Q 001220 592 --HFSWRVKFMDVG--------LG---TKGVINGVAVG--SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--- 652 (1121)
Q Consensus 592 --~~~~RI~F~r~~--------~g---~rg~~~Gv~~~--~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--- 652 (1121)
..++-++=.+-+ .+ +.+-.-+-.++ ..+.++||+++-...++++..-++.++.+..+.. ++
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 433311111111 11 22211111222 5678999999999999999999999886666633 44
Q ss_pred cCCCccccccccCHHHHHHHHHHHhhhccccCC
Q 001220 653 LSCEGALLMEFRTPEEATTAMAHLRQHRKSRSN 685 (1121)
Q Consensus 653 l~ek~~LpVEF~t~edA~~A~~~l~~~r~~rs~ 685 (1121)
.-.+++++-||-.+-..-+|.++||+...|.++
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 457999999999999999999999999999443
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.57 E-value=0.018 Score=65.67 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=114.2
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--- 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe--------~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 595 (1121)
...++||-+|+.++|-+++.++|++||=|- .|.+|+ -+|=|++-|-..+--.-|++.|+|..+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 355799999999999999999999999874 256775 5789999999999999999999998765
Q ss_pred -EEEEecccCCCCccc-----------------------------cceeccccceEEEccCCCc-----------chhHH
Q 001220 596 -RVKFMDVGLGTKGVI-----------------------------NGVAVGSCFHVYVGNIPNQ-----------WAKDE 634 (1121)
Q Consensus 596 -RI~F~r~~~g~rg~~-----------------------------~Gv~~~~s~~LwVG~iss~-----------~~keE 634 (1121)
||+.|.-+..-...+ ++..++..+.|-+-++=.. -.+|+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 444443321111111 1222345667777776542 34778
Q ss_pred HHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 635 ILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 635 Lf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
|..|..++|.+..+-+-+-...+.+.|=|.+.+||..+.+.|+|.-
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 8888899888888777777888999999999999999999999854
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.53 E-value=0.0041 Score=51.16 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=49.3
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceeeccC---CCccccccccCHHHHHHHHHHHhhhc
Q 001220 620 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 620 ~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~---ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.|+|+|++...+.++|..-+..++....+.+..-. .++..+|+|.+.++|..|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 38999999999999999999987655444333221 36899999999999999999998875
No 102
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.51 E-value=0.0025 Score=73.58 Aligned_cols=137 Identities=14% Similarity=0.167 Sum_probs=100.5
Q ss_pred ceEEeccCCCccCHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeccc-CCCC
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVG-LGTK 607 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~f--GpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---RI~F~r~~-~g~r 607 (1121)
++||+|||++.++.+||+..|+-- |-=-.|.+. -|||||++-|-.-|.+|.+.+.|+.-. |++.--.- -..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq- 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ- 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH-
Confidence 579999999999999999999754 222234443 499999999999999999999998533 55543221 012
Q ss_pred ccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCcccc-ccccCHHHHHHHHHHHhhhccc
Q 001220 608 GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 608 g~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~Lp-VEF~t~edA~~A~~~l~~~r~~ 682 (1121)
-||.+-+-+|+++..-|=+-.=.-..+....++.+..+.+.... +.|-+-+.+..|+.+|++.-.+
T Consensus 79 ---------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 79 ---------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred ---------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 47889999999987655444444455566666665554444444 8899999999999999997766
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.47 E-value=0.0028 Score=69.93 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=62.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--c----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--P----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~--~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~ 600 (1121)
+..|||||=.|+..-.+.||-..|..||-|.+-++| | +|-|.||-|.|+.-|-.|+.+|+|.-++ |+++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 458999999999999999999999999999987765 2 7889999999999999999999998876 55543
No 104
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.43 E-value=0.0047 Score=67.74 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=54.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCC
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNH 592 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~ 592 (1121)
-.|+|.||..+|+++||+++|+.||.+..+.+.. +.|.|-|.|.+-+||++|++-++|.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv 147 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGV 147 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCc
Confidence 5799999999999999999999999999998842 6699999999999999999999994
No 105
>smart00360 RRM RNA recognition motif.
Probab=96.34 E-value=0.0044 Score=50.41 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=47.5
Q ss_pred EccCCCcchhHHHHHhhhcccccCCceeecc----CCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 623 VGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 623 VG~iss~~~keELf~E~~kag~kgpv~f~Dl----~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
|++++..++.++|..-+..+|....+.+..- ..++.++|+|.+.++|..|++.|++...
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 6889999999999999998886655544332 2367999999999999999999986554
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.28 E-value=0.0019 Score=69.78 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=58.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...++|||||+...|+|+.|+++|-.=||+..|.+-. ...||||+|++.-----|++.|+|-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 4579999999999999999999999999999999843 4459999999999999999999998754
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.18 E-value=0.01 Score=64.18 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=65.3
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 600 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 600 (1121)
-..+.+-|++-||+..++...|+.+|+.|+-.+.|++.+ -++.|||+|.+...|-.|+..|||.++- +|.|+
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 367889999999999999999999999999999999877 8899999999999999999999998764 55554
No 108
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.16 E-value=0.0067 Score=69.20 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=54.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
+.-+.+||.++-+|.+|+||...|+-||+|..-..++ -|||.|+||.|..---+|+-.|+-..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc
Confidence 4568999999999999999999999999999888864 589999999998877777777765443
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.13 E-value=0.061 Score=63.66 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=96.0
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHH---hhcCCceeEE--------E
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRARE---YIRNHFSWRV--------K 598 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~---~L~G~~~~RI--------~ 598 (1121)
..+=+-.|+=++|++||+..|+-++ |++|.+.+ ..|=|||||.+.+|+..|++ ...|++-..| +
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 3455678899999999999999996 88888765 68999999999999999986 4556543311 2
Q ss_pred E-ecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCC-c-eeec--cCCCccccccccCHHHHHHHH
Q 001220 599 F-MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-Y-MVTD--LSCEGALLMEFRTPEEATTAM 673 (1121)
Q Consensus 599 F-~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgp-v-~f~D--l~ek~~LpVEF~t~edA~~A~ 673 (1121)
+ +++ .|-++ ....-.|-.=+++=..+++||+.-|.-.-.+.. + ...+ ....+.++|.|+|.|.|..||
T Consensus 90 ~~~~~-~g~~s------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 90 WVMRP-GGPNS------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccC-CCCCC------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 2 222 11111 124456778889999999999877654332222 1 1122 567788999999999999997
Q ss_pred HHHh
Q 001220 674 AHLR 677 (1121)
Q Consensus 674 ~~l~ 677 (1121)
..-|
T Consensus 163 ~rhr 166 (510)
T KOG4211|consen 163 GRHR 166 (510)
T ss_pred HHHH
Confidence 5543
No 110
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.005 Score=62.24 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=52.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..|+.|||||+|=..+.|||-.=|-+.|-+..+.. .| .+.=+.-+|||.+.+||..||++|++.|..
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 46999999999999999998877777664443311 22 233366789999999999999999999877
No 111
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.11 E-value=0.0067 Score=67.12 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=55.5
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.||||||+...++++|...|..+|.+..+.+ .+-..++.++|+|++.++|..|+. |++..++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~ 68 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV 68 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC
Confidence 578999999999999999999999998887755 444467899999999999999995 8887766
No 112
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.10 E-value=0.02 Score=55.16 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=55.1
Q ss_pred eEEeccCCCccCHHHHHHHhhcc--CCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCc--------eeEEE
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRF--GPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHF--------SWRVK 598 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~f--GpLe~v~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~--------~~RI~ 598 (1121)
+|-|-||++.-|.++|.+++... |..|=|.+ -...|||||+|.+.++|..-.+.++|+. +|.|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 57789999999999999988765 33333322 2379999999999999999999999984 45788
Q ss_pred Eeccc
Q 001220 599 FMDVG 603 (1121)
Q Consensus 599 F~r~~ 603 (1121)
+|+.|
T Consensus 83 yAriQ 87 (97)
T PF04059_consen 83 YARIQ 87 (97)
T ss_pred hhHhh
Confidence 88774
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.08 E-value=0.071 Score=61.52 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=111.9
Q ss_pred cCCceEEeccCCCcc-CHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeccc---
Q 001220 531 SASKQLWLGSFGPEA-SEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG--- 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~v-te~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~--- 603 (1121)
.+++-+-|-.|-.+- .-+.|.-+|=-||.|+.|.|.+ -.|.|.||-.|...-++|+.-|+|..+. ++.|.-+.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 346777777787774 4566888999999999999987 8899999999999999999999999876 66665442
Q ss_pred -------------------CCCCc---cccceecc-----ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCC
Q 001220 604 -------------------LGTKG---VINGVAVG-----SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE 656 (1121)
Q Consensus 604 -------------------~g~rg---~~~Gv~~~-----~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek 656 (1121)
.++|- ..-+-|++ +|+.|--=+.+.-++.|+|+.=+..-.-. ++.++-|..|
T Consensus 365 v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~k 443 (494)
T KOG1456|consen 365 VSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLK 443 (494)
T ss_pred cccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeeccc
Confidence 12211 02233333 89999888999999999887766554433 5555443333
Q ss_pred c----cccccccCHHHHHHHHHHHhhhccc
Q 001220 657 G----ALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 657 ~----~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
. .=++||++.+||..|+..||+.-++
T Consensus 444 serSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 444 SERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred ccccccceeeeehHHHHHHHHHHhcccccc
Confidence 2 2369999999999999999976643
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.97 E-value=0.0088 Score=59.89 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=55.9
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-e---ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.||||+++..+++|+|...|..++....+.+ . ....++.++|+|.+.++|..|++.|++....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~ 183 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE 183 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC
Confidence 599999999999999999999999997755533 3 3688999999999999999999999965443
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.52 E-value=0.013 Score=68.87 Aligned_cols=64 Identities=23% Similarity=0.234 Sum_probs=57.0
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCcee----eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f----~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.+|||+|+-.|++|+|...+..++.+-.+.+ .....++++|+||...|+|..|++.||+.-.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 89999999999999999999999997777644 33788999999999999999999999986655
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.37 E-value=0.0041 Score=76.69 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=104.4
Q ss_pred cCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 521 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 521 ~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
|--...-|.+.-.++.+|-||.+...+.||...|..||-++.|.+. +.||+|||+|...++|-+|+.-.++++.
T Consensus 655 ~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 655 ENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3344455556667889999999999999999999999999988874 5899999999999999999988777654
Q ss_pred eEEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCC---ceeeccCCCccccccccCHHHHHH
Q 001220 595 WRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP---YMVTDLSCEGALLMEFRTPEEATT 671 (1121)
Q Consensus 595 ~RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgp---v~f~Dl~ek~~LpVEF~t~edA~~ 671 (1121)
. ...+.|-|.+-+-+|||+..=..+.+..-. +.....-.++-|.++|.|..+|-+
T Consensus 735 g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 735 G----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred h----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 3 234667778888899998877777663222 234556677888999999998877
Q ss_pred HHHHH
Q 001220 672 AMAHL 676 (1121)
Q Consensus 672 A~~~l 676 (1121)
+...+
T Consensus 793 ~~~s~ 797 (881)
T KOG0128|consen 793 KVASV 797 (881)
T ss_pred hcccc
Confidence 65433
No 117
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.37 E-value=0.019 Score=56.51 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=56.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
-++.|||-+.|-.+++||+..=|.++|.+..+++ -.-..+++++|=|+.+.||..|+.||.++-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 5789999999999999999888888777777666 336778999999999999999999999876
No 118
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.30 E-value=0.012 Score=66.65 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=45.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHH
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAR 586 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~------~~~rgfAFVeF~~i~DAv~A~ 586 (1121)
.+++++||.|+.+++|.|++..|++||.|..+.+ -+.|||+||.|.+.+ +++-+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~-sVdkv 155 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED-SVDKV 155 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc-cccee
Confidence 7899999999999999999999999998886665 259999999998654 44433
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.48 Score=56.79 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=96.2
Q ss_pred eeeecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEE--------eccCc---eEEEEecCHHH---H
Q 001220 517 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--------FPIKG---FALVEYINIID---A 582 (1121)
Q Consensus 517 ~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~--------~~~rg---fAFVeF~~i~D---A 582 (1121)
.|..-.-+---..-.-|++++||.|+.+++|+.|-.-|.+||.+--=|= ++++| |+|..|++.+- -
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 4444444444455566999999999999999999999999999865553 56888 99999997653 3
Q ss_pred HHHHHhhcCCcee-----EEEEecccC------CCCcccc-ceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee
Q 001220 583 IRAREYIRNHFSW-----RVKFMDVGL------GTKGVIN-GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV 650 (1121)
Q Consensus 583 v~A~~~L~G~~~~-----RI~F~r~~~------g~rg~~~-Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f 650 (1121)
+.|+..=.++-.. +|+=+..++ -+-..+. -...-+.|.++||+++--..-+||-.=|+- ..|.+-.
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~--lyGgV~y 400 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED--LFGGVLY 400 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHH--hcCceEE
Confidence 4454442222211 111110110 0000011 112458999999999999999999877775 5555533
Q ss_pred e--ccC-----CCccccccccCHHHHHHH
Q 001220 651 T--DLS-----CEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 651 ~--Dl~-----ek~~LpVEF~t~edA~~A 672 (1121)
. |.. .+++.=|=|.+-..=++|
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~A 429 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKA 429 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHH
Confidence 2 222 345555666665543333
No 120
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=94.95 E-value=1.2 Score=52.67 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=10.4
Q ss_pred CCccccCCCCCCCC
Q 001220 793 MPEAGFRKIDGHDS 806 (1121)
Q Consensus 793 vpe~g~~a~~g~~~ 806 (1121)
+|+|-..+.||+..
T Consensus 234 ~p~~~~~~~dgs~~ 247 (518)
T KOG1830|consen 234 RPEYQSEQADGSYS 247 (518)
T ss_pred Cccccccccccchh
Confidence 57888888888543
No 121
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=94.54 E-value=0.038 Score=46.22 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHhhhcccccCCceeeccCCC-ccccccccCHHHHHHHHHHHhhhcc
Q 001220 635 ILHESYKVVYKGPYMVTDLSCE-GALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 635 Lf~E~~kag~kgpv~f~Dl~ek-~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
|.+.+.++|.+.. +.....+ +.++|||.+.+||..|+++|++...
T Consensus 1 L~~~f~~fG~V~~--i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--IKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EEE--EEEETTSTTEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEEE--EEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3455666665544 3334444 9999999999999999999998764
No 122
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.54 E-value=0.17 Score=59.09 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001220 879 AVAAPFIPPSVTPLAQIQGAPMQNYDQMF 907 (1121)
Q Consensus 879 ava~Pf~P~s~TPLsQ~QgpP~q~~~q~~ 907 (1121)
+...+-.|..+++.+++++++..+..-++
T Consensus 304 a~P~~~aP~~~~~ps~~~~a~~~p~~~q~ 332 (487)
T KOG4672|consen 304 AIPEPDAPLQPIHPSTFAGAAASPTNFQP 332 (487)
T ss_pred cCCCCCCCcccCCcccccccccccCcCCC
Confidence 34445556666666666665555543333
No 123
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.53 E-value=0.044 Score=72.62 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=3.3
Q ss_pred CCCCcc
Q 001220 1009 PAEWPA 1014 (1121)
Q Consensus 1009 pS~Wps 1014 (1121)
...|..
T Consensus 1762 ~s~W~R 1767 (2039)
T PRK15319 1762 GSVWAR 1767 (2039)
T ss_pred CCeEEE
Confidence 456653
No 124
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.29 E-value=0.055 Score=71.75 Aligned_cols=6 Identities=33% Similarity=0.163 Sum_probs=2.8
Q ss_pred eEEecc
Q 001220 535 QLWLGS 540 (1121)
Q Consensus 535 ~LWVGn 540 (1121)
.||.++
T Consensus 1261 ~l~~~~ 1266 (2039)
T PRK15319 1261 TLVAAS 1266 (2039)
T ss_pred eEEEec
Confidence 455543
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.26 E-value=0.22 Score=57.82 Aligned_cols=148 Identities=19% Similarity=0.151 Sum_probs=101.1
Q ss_pred eccCCCccCHHHHHHHhhcc----CCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhc---CCcee----------
Q 001220 538 LGSFGPEASEAHIRFQIDRF----GPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIR---NHFSW---------- 595 (1121)
Q Consensus 538 VGnL~~~vte~dL~~~F~~f----GpLe~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~---G~~~~---------- 595 (1121)
.-.|+-++++.|+.+.|..- |-.+.|.|. ++-|=|||.|...+||-.|.+-=+ |++-.
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv 245 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV 245 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 35678899999999999743 244566664 266899999999999999975433 33321
Q ss_pred ---EEEEeccc-CC--CCccccceec------cccceEEEccCCCcchhHHHHHhhhccc----ccCCceeec--cCCCc
Q 001220 596 ---RVKFMDVG-LG--TKGVINGVAV------GSCFHVYVGNIPNQWAKDEILHESYKVV----YKGPYMVTD--LSCEG 657 (1121)
Q Consensus 596 ---RI~F~r~~-~g--~rg~~~Gv~~------~~s~~LwVG~iss~~~keELf~E~~kag----~kgpv~f~D--l~ek~ 657 (1121)
--+++... ++ +-+.+.|++. +.-.-|..-|.+=...+|+|++-++-|. ..|-+++.+ ....+
T Consensus 246 qqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 246 QQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 11333222 22 1222333322 2345678889999999999999988877 334457766 66778
Q ss_pred cccccccCHHHHHHHHHHHhhhccccCCC
Q 001220 658 ALLMEFRTPEEATTAMAHLRQHRKSRSNY 686 (1121)
Q Consensus 658 ~LpVEF~t~edA~~A~~~l~~~r~~rs~~ 686 (1121)
-+||||++.|+|..||..-+.+.+ +++|
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~m-k~RY 353 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLM-KSRY 353 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhc-ccce
Confidence 999999999999999877665553 4444
No 126
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.16 E-value=0.054 Score=59.61 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=55.6
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..||||||+...+.++|...|..+|.+..+.+ .|-+.+..++|+|++.++|..|+ .|++..+.
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 67999999999999999999999998888844 66666789999999999999997 79998766
No 127
>smart00361 RRM_1 RNA recognition motif.
Probab=94.14 E-value=0.047 Score=48.17 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHHHhhh----cccccCCce--eec-----cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 633 DEILHESY----KVVYKGPYM--VTD-----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 633 eELf~E~~----kag~kgpv~--f~D-----l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|+|..++. ++|.+..+. +.+ ...++.++|+|++.+||..|+++|+++-..
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44555555 888777663 233 345888999999999999999999997643
No 128
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.03 E-value=0.15 Score=63.18 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=13.7
Q ss_pred HHHHhhhccCCchhhhc
Q 001220 1079 IWARLMFILPYSQDICS 1095 (1121)
Q Consensus 1079 ~w~rlL~LlP~SeEvcs 1095 (1121)
...-|+.++|..+|+..
T Consensus 477 ~ve~L~r~lPTe~E~kl 493 (830)
T KOG1923|consen 477 PVELLQRILPTEAEVKL 493 (830)
T ss_pred HHHHHHhcCCchHHHHH
Confidence 55668889999998876
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.02 E-value=0.073 Score=63.76 Aligned_cols=65 Identities=9% Similarity=0.234 Sum_probs=56.1
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c---cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P---IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~---~---~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
.+-++||||..|+.-+...||..+|++||++..-.++ + .|-|.||..-.-.||-..++-|.-+.+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 4558999999999999999999999999999876653 2 677999999999999999888776644
No 130
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=93.99 E-value=0.072 Score=62.36 Aligned_cols=71 Identities=14% Similarity=0.008 Sum_probs=61.3
Q ss_pred cccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEE-eccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 525 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 525 ~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~-~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
-|..+....|+++|-||+-+-|=.-|+..|..||.+...-+ .+.+.-..|-|...+||++|+..|+|.++-
T Consensus 528 ~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 528 NAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred ccccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc
Confidence 36677778999999999999999999999999999886555 444444489999999999999999999864
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.74 E-value=0.042 Score=59.62 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=52.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.+.|-|=++...+...||...|.+||.+..... -++||||+|...+||..|++.|+|..+.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhc
Confidence 356777888888899999999999999954444 7899999999999999999999998653
No 132
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=93.74 E-value=0.076 Score=54.43 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=49.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee----eccCCCccccccccCHHHHHHHHHHHhhh
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f----~Dl~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
.--.|+|-+|....+.|++-.-|--++.+-.+.. ...--+++++|||+|.++|..||..||+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 4568999999999999998776666654443321 22456899999999999999999999964
No 133
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.69 E-value=0.047 Score=63.78 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=59.2
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-------------------CceEEEEecCHHHHHHHHHhhcCC
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------------------KGFALVEYINIIDAIRAREYIRNH 592 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-------------------rgfAFVeF~~i~DAv~A~~~L~G~ 592 (1121)
+++.|-+=||+-+-.-+.|+.+|+.+|.|.+|++-.+ +-+|||||+..+-|++|.+-|.-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999655 668999999999999999999877
Q ss_pred ceeE
Q 001220 593 FSWR 596 (1121)
Q Consensus 593 ~~~R 596 (1121)
..||
T Consensus 310 ~~wr 313 (484)
T KOG1855|consen 310 QNWR 313 (484)
T ss_pred hhhh
Confidence 7773
No 134
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.65 E-value=0.12 Score=44.43 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=39.4
Q ss_pred EeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHH
Q 001220 537 WLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 586 (1121)
Q Consensus 537 WVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~ 586 (1121)
=|-...++-. +++...|..||.|.++.+-...++++|.|++..||+.|+
T Consensus 5 ~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 5 SVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 3444455444 456668999999999998878999999999999999984
No 135
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.61 E-value=0.14 Score=49.68 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=39.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcC
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRN 591 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G 591 (1121)
+-|.+-+++..++.++|.+.|..||+|.=|-|.++-.-|||-|.+.++|..|++.+.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHh
Confidence 3466777999999999999999999999999999999999999999999999988754
No 136
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.45 E-value=0.055 Score=65.21 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=63.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--------EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~-~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--------RI~F~r 601 (1121)
.+|+-|+|-||-.--|...|.++++ ..|-|+.+||...++-+||-|-..+||++-+++|.|- .| .|.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV-~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNV-QWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhcc-ccCCCCCceeEeeecc
Confidence 4588999999999999999999999 5677889999999999999999999999999999994 34 677775
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
.
T Consensus 521 ~ 521 (718)
T KOG2416|consen 521 A 521 (718)
T ss_pred h
Confidence 4
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.20 E-value=0.33 Score=59.10 Aligned_cols=141 Identities=25% Similarity=0.402 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccceeeee
Q 001220 55 IRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVALI 134 (1121)
Q Consensus 55 ~r~v~~~y~~~k~~~~~~~~~~~~~leq~y~~li~~s~gc~svqri~a~liprya~~cptaleaa~kv~i~m~~~~~a~~ 134 (1121)
|..+|+.|.+|-.- +|- .+=+.+|..+|.++-|=..++|+.|-+||||..+=|+--|.|.-+.+|.-
T Consensus 2 ie~lY~~~~~L~~a---~d~---~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc------- 68 (556)
T PF05918_consen 2 IEKLYENYEILADA---KDK---SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC------- 68 (556)
T ss_dssp HHHHHHHHHHHHHT---GGG---GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHhhcC---CCc---ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-------
Confidence 67899999999872 332 45567999999999999999999999999999999999999998887753
Q ss_pred ccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHH
Q 001220 135 NRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVF 214 (1121)
Q Consensus 135 ~rged~~gva~~ta~aci~gl~dic~~a~s~~~~s~v~~gics~v~~~vl~ff~~~f~gkdi~~~~~~~~~~~qd~~e~~ 214 (1121)
-+||. +.=+.-|-||.+||-.. ++++ ..+-
T Consensus 69 -EDed~-----~iR~~aik~lp~~ck~~---------------------------------------~~~v-----~kva 98 (556)
T PF05918_consen 69 -EDEDV-----QIRKQAIKGLPQLCKDN---------------------------------------PEHV-----SKVA 98 (556)
T ss_dssp -T-SSH-----HHHHHHHHHGGGG--T-----------------------------------------T-H-----HHHH
T ss_pred -hcccH-----HHHHHHHHhHHHHHHhH---------------------------------------HHHH-----hHHH
Confidence 24442 24455688899999652 1111 2456
Q ss_pred HhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCcc
Q 001220 215 LGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNPS 262 (1121)
Q Consensus 215 ~~lk~~~~~~~~~~~~~l~~~~~l~ll~if~~~p~~~l~acf~l~~s~ 262 (1121)
++|-|-+.-|+..-++-. --+|+.+|-..||..|.+=|.-+.++
T Consensus 99 DvL~QlL~tdd~~E~~~v----~~sL~~ll~~d~k~tL~~lf~~i~~~ 142 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAV----KNSLMSLLKQDPKGTLTGLFSQIESS 142 (556)
T ss_dssp HHHHHHTT---HHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHH--
T ss_pred HHHHHHHhcccHHHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 666666654444333222 24788888899999999999988743
No 138
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=0.091 Score=63.13 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=54.7
Q ss_pred cceeeeecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHh
Q 001220 514 SQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREY 588 (1121)
Q Consensus 514 s~~~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~-----~~rgfAFVeF~~i~DAv~A~~~ 588 (1121)
.+.|-.+||.|. ||.---+.-+.-|..+|++||++.++.+- .-+||+|+||.+.++|..|++.
T Consensus 57 ~D~vVvv~g~Pv------------V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 57 FDSVVVVDGAPV------------VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cceEEEECCCcc------------cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 455666888774 23323334466788999999999999873 2689999999999999999999
Q ss_pred hcCCcee
Q 001220 589 IRNHFSW 595 (1121)
Q Consensus 589 L~G~~~~ 595 (1121)
|+|+.+-
T Consensus 125 l~G~~ld 131 (698)
T KOG2314|consen 125 LNGKRLD 131 (698)
T ss_pred cccceec
Confidence 9998753
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=92.93 E-value=0.15 Score=58.42 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=43.7
Q ss_pred HHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 547 EAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 547 e~dL~~~F~~fGpLe~v~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
++||++.=++||++++|.+| .+.|-|-|.|+|.++|..+++.|+|+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 57788889999999999999 699999999999999999999999954
No 140
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=92.23 E-value=0.18 Score=53.95 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=46.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecc-CCCccccccccCHHHHHHHHHHHhh
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl-~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
.++.|||||.+..+-..||+.=|-|++.+..+..+.- ..-..++||||.+-||--|..+-++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG 67 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG 67 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc
Confidence 5889999999999877777777777665555444442 2245689999999999999887764
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.19 E-value=0.098 Score=65.14 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=71.7
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 600 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 600 (1121)
-|||+.--+.++-|..-+.+-.-|..+|..||.+-+.|..|+-+-|.|+|..++-|+-|.++|+|+.+- ||-|+
T Consensus 292 snv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 292 SNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 488999999999999999999999999999999999999999999999999999999999999999764 89988
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
+..
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 764
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.99 E-value=0.24 Score=51.35 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=45.5
Q ss_pred cCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 540 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 540 nL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
|+.+.-.-..+-+.++.||+|++|+. .+|--|.|.|+|+.-|-.|+.+.+-..+.
T Consensus 97 nm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 97 NMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred cCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 45554445567778899999999986 67899999999999999999999987653
No 143
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=0.12 Score=56.47 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=47.5
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCC----ceeeccCCCccccccccCHHHHHHHHHHHhhhcc-c---cCCCC
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGP----YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK-S---RSNYL 687 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgp----v~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~-~---rs~~~ 687 (1121)
.-|.|||||.-..++..=|-.-|--|+-+.. .......-|+..+|||+-.|||++||.+||.--. | |.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4689999999887765444333333332222 2223345578899999999999999999998432 2 66653
No 144
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=90.98 E-value=0.39 Score=57.37 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=51.8
Q ss_pred cccccceeeecccccCCccceeEEeecccccccccccCCCCCCCCcccccCCccccccccccccccCCCCcccccccccC
Q 001220 968 SGQLLQYQWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTKRTDFRHVKSTFTSTPPNKREVCRLVPS 1047 (1121)
Q Consensus 968 s~~~i~~~WqG~l~kSganyCtIl~s~lds~IC~Ai~a~sepS~Wps~eD~t~RtDfq~Le~TFSstPpkKREV~RLvPa 1047 (1121)
.+..+.+-|+......+--.- .+.-|. ++|....... .|-..+.++|..+..+. ....-+..
T Consensus 281 ~r~~~KL~Wr~~~~~~~~Gv~-------~~r~~~--------t~W~s~D~~~--~D~~r~~~LFEsr~~~~-~P~KK~~E 342 (817)
T KOG1925|consen 281 KRKTVKLFWRDVKLAGGHGVS-------ASRPCA--------TLWASLDPVS--VDTARLEHLFESRAKEV-LPSKKAGE 342 (817)
T ss_pred cCceeEEEeecceecCCCCCc-------cccccc--------hhhhccCcce--ecHHHHHHHHHHhhhhh-ccchhhcc
Confidence 356677888876553332211 122333 6787655444 55566777887532110 00001110
Q ss_pred ------CCCCCcchhcHHHHHhhcCccceee-----ccc---hhhHHHHhhhccCCchhhhc
Q 001220 1048 ------SPGDHKGFQDFVSYLKQRECAGVIK-----IPA---VKSIWARLMFILPYSQDICS 1095 (1121)
Q Consensus 1048 ------s~~D~k~fqDFisyLkqkd~AGViK-----ips---~k~~w~rlL~LlP~SeEvcs 1095 (1121)
++-+-|.-|-....|-......||+ .++ .|.-...||+..|.-+|+-+
T Consensus 343 ~r~~~~tVL~~KRt~AINIGLT~LPPv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qk 404 (817)
T KOG1925|consen 343 GRRTMTTVLDPKRTNAINIGLTTLPPVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQK 404 (817)
T ss_pred cceeeeeecCcccccceeeccccCCchhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHH
Confidence 1112234444444444444433332 111 12245667777887777665
No 145
>PLN03213 repressor of silencing 3; Provisional
Probab=90.87 E-value=0.28 Score=58.34 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=54.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCH--HHHHHHHHHHhhhc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP--EEATTAMAHLRQHR 680 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~--edA~~A~~~l~~~r 680 (1121)
....|||||++-.++.|+|..=|..+|.+..+.+.--..|+.+||||.+. +++..|+..|++..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 45789999999999999999988888877777664444599999999987 67999999999855
No 146
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=90.60 E-value=1.3 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 001220 881 AAPFIPPSVTPLAQIQGAPMQN 902 (1121)
Q Consensus 881 a~Pf~P~s~TPLsQ~QgpP~q~ 902 (1121)
+...+|....|+.++....-+.
T Consensus 301 sk~a~P~~~aP~~~~~ps~~~~ 322 (487)
T KOG4672|consen 301 SKTAIPEPDAPLQPIHPSTFAG 322 (487)
T ss_pred ccccCCCCCCCcccCCcccccc
Confidence 4566666666555554443333
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.92 E-value=0.42 Score=53.77 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=102.5
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcc-eEEE-----eccCceEEEEecCHHHHHHHHHhhcCCcee-EEEEecc--
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV-- 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe-~v~~-----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~-RI~F~r~-- 602 (1121)
..+.+++|++.-++.+.+....|..+|..- .... .+.++|.+|.|+..+.+..|.......... +.-+.+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467789999999999999999999999544 3333 359999999999999999998887765433 1111111
Q ss_pred --cCCCCccccceeccccceEE-EccCCCcchhHHHHHhhhcccccCCceeec----cCCCccccccccCHHHHHHHHHH
Q 001220 603 --GLGTKGVINGVAVGSCFHVY-VGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 603 --~~g~rg~~~Gv~~~~s~~Lw-VG~iss~~~keELf~E~~kag~kgpv~f~D----l~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
++-......+...+++..+| ||+.+-..++|+|..++...+.+--+.+.. ...+..++++|.+..++..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 01111111122234566666 999999999999998887777555544433 55667779999999999888775
No 148
>PHA01732 proline-rich protein
Probab=89.87 E-value=0.36 Score=46.07 Aligned_cols=11 Identities=27% Similarity=0.178 Sum_probs=4.2
Q ss_pred CCccceeEEee
Q 001220 983 SGVHYCTIYAQ 993 (1121)
Q Consensus 983 SganyCtIl~s 993 (1121)
+|.--.+|-.+
T Consensus 62 ~gTasLrIpkq 72 (94)
T PHA01732 62 GGTASLRIPKQ 72 (94)
T ss_pred cCcceeEeecc
Confidence 33333334333
No 149
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.75 E-value=18 Score=42.48 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=44.4
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccc--cCCcee----eccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVY--KGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~--kgpv~f----~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
--+|||+.-=..++++|+.-+.+.|. +..+.| +....|+++++-.-+-....+-|+.|-.+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 35899999999999999999998883 333322 446788888888777655556666665443
No 150
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=88.65 E-value=0.27 Score=54.68 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCce------------------EEEEecCHHHHHHHHHhhcCCc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF------------------ALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgf------------------AFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
.+.-+|+++|+|...-..|++.|+.||.|..|.+.+..-+ ..|||.+-+.|..-.+.|+|+-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566899999999999999999999999999999874333 4689999999999999999976
Q ss_pred ee
Q 001220 594 SW 595 (1121)
Q Consensus 594 ~~ 595 (1121)
++
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 53
No 151
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.90 E-value=0.81 Score=51.93 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=42.0
Q ss_pred CHHHHHHHhhccCCcceEEEeccCce-------EEEEecCHHHHHHHHHhhcCCcee
Q 001220 546 SEAHIRFQIDRFGPLEHFFFFPIKGF-------ALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 546 te~dL~~~F~~fGpLe~v~~~~~rgf-------AFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
-|+++.++-++||.+.+|.+|-..+| -||+|++.+.|+.|+=.|+|...+
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 45677788999999999999765554 599999999999999999996543
No 152
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=87.67 E-value=7.1 Score=46.49 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=4.9
Q ss_pred ceEEEeccCce
Q 001220 561 EHFFFFPIKGF 571 (1121)
Q Consensus 561 e~v~~~~~rgf 571 (1121)
+.+.||.+.+|
T Consensus 146 ~gLkfYTdPsy 156 (518)
T KOG1830|consen 146 DGLKFYTDPSY 156 (518)
T ss_pred ccceeecCcHH
Confidence 34444444444
No 153
>PF15449 Retinal: Retinal protein
Probab=86.59 E-value=15 Score=48.02 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=11.8
Q ss_pred cccccCCccceeEEee
Q 001220 978 GALCKSGVHYCTIYAQ 993 (1121)
Q Consensus 978 G~l~kSganyCtIl~s 993 (1121)
...+|..-|.|.|+|-
T Consensus 1133 ~~saK~~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1133 AASAKVSGNTCSIFCP 1148 (1287)
T ss_pred cccccccCCccceecc
Confidence 3445777888999984
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.17 E-value=0.41 Score=53.83 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=59.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
..-+.||++.-+++++||...|..+|.|.++++- ..+|||||.|.+..++..|+.. ++..+. ++++.++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3344599999999999999999999999999983 2789999999999999999998 777654 6888866
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.69 E-value=0.79 Score=53.60 Aligned_cols=67 Identities=13% Similarity=0.307 Sum_probs=53.8
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCceeEEEEec
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMD 601 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r 601 (1121)
-|-|.||.|++|.+++.-+|+..|.|+.+.+|+ ..-.|||-|.|..-+..|-+.-+-.++-|.-|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 466899999999999999999999999999997 2357999999999988886655544444444433
No 156
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.30 E-value=1.8 Score=46.20 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=43.6
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--CCce----eEEEEecc
Q 001220 545 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFS----WRVKFMDV 602 (1121)
Q Consensus 545 vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~--G~~~----~RI~F~r~ 602 (1121)
...+.|+++|..|+++-+|...+.=+=..|.|.+.++|++|+..|+ |..+ +|+.|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4568999999999999999999988889999999999999999999 6644 37777744
No 157
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=83.51 E-value=1.4 Score=50.13 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=58.5
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCc-eeec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv-~f~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|-+.|+||.++=..+..+|-.||.++|.+..+ .|.| .-.++++||||+..-|-..|-++..++.+-
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 89999999999999999999999999977777 4444 567999999999999999999998886654
No 158
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=82.54 E-value=0.62 Score=51.89 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=38.5
Q ss_pred HHHHHHhh-ccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 548 AHIRFQID-RFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 548 ~dL~~~F~-~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
+|+..+|+ +||.|+++.+-. -+|=+||.|+..+||+.|.++|+|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc
Confidence 45555566 999999997743 57889999999999999999999965
No 159
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=82.36 E-value=1.2 Score=55.28 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=53.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCce-------eeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-------VTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~-------f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
...+|||||++++++.+.|+-.+..||-+..+. ..--+++++-+|=|-+-.||-+||+.||++-.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 678999999999999999999888877443332 22357889999999999999999999999543
No 160
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=81.88 E-value=6.1 Score=50.16 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=17.3
Q ss_pred cccCCccceeEEeecc---cccccccccCCCC
Q 001220 980 LCKSGVHYCTIYAQRE---ESDICKYTHDISE 1008 (1121)
Q Consensus 980 l~kSganyCtIl~s~l---ds~IC~Ai~a~se 1008 (1121)
+.-.+.|+|.|+++.+ -.++|.++..+.+
T Consensus 466 ~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~ 497 (833)
T KOG1922|consen 466 LDPRRPQNIAILLSSLNMPTEDIPQALLELDD 497 (833)
T ss_pred cCCCCccceeeehhhcCCchHHHHHHHhccCc
Confidence 4456677788887765 4555554444444
No 161
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=81.32 E-value=2.6 Score=47.03 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=53.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---ccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.++.|-|-|.|-....++|..=++.||.+-.+-+ . ..-.++.+||=|++-|||++|.+.|+++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 6677999999999999999777788775555533 2 26789999999999999999999999976
No 162
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=81.01 E-value=7.3 Score=49.50 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=15.9
Q ss_pred HHHHhhhccCCchhhhcccccc
Q 001220 1079 IWARLMFILPYSQDICSMLSIA 1100 (1121)
Q Consensus 1079 ~w~rlL~LlP~SeEvcs~Lsl~ 1100 (1121)
.|..++++.|.-+|.-....+.
T Consensus 504 ~l~~l~~~~pt~~E~~~l~~~~ 525 (833)
T KOG1922|consen 504 QLEKLLKFAPTKEEETKLKEES 525 (833)
T ss_pred HHHHHHccCCChhHHHHHHhhc
Confidence 7888888888777766644443
No 163
>PRK15313 autotransport protein MisL; Provisional
Probab=80.14 E-value=3 Score=53.55 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.9
Q ss_pred CCceEEecc
Q 001220 532 ASKQLWLGS 540 (1121)
Q Consensus 532 ~S~~LWVGn 540 (1121)
.+++++||+
T Consensus 182 ~~~~i~~g~ 190 (955)
T PRK15313 182 GSANIYVGD 190 (955)
T ss_pred ccceEEEcC
Confidence 455566654
No 164
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=79.90 E-value=2.1 Score=46.61 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=52.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCc-e------eeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-M------VTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv-~------f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..-.+||+.|+.-.-+-+++.-+..++ |++ . =..+..+|++|||||+.|.|--|-+-||.+...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 456789999999999999999888875 332 1 134789999999999999999999999987654
No 165
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=10 Score=49.02 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=29.8
Q ss_pred hccCCCceEeechh--hhhccCCc---------hHHHHhhhcccCCCc-----hhhhhhhHHHH
Q 001220 189 SSFDGKDIIHTVDK--EITKMLDS---------DEVFLGLKKKFSDED-----ESSLIKLSKFR 236 (1121)
Q Consensus 189 ~~f~gkdi~~~~~~--~~~~~qd~---------~e~~~~lk~~~~~~~-----~~~~~~l~~~~ 236 (1121)
.-.++-|||++.+. +++.|+.. .+-+.+||+-+++++ .--+++..|.|
T Consensus 94 ~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkLLssGsFYfS~~fDlt~~~q~r 157 (1080)
T KOG0566|consen 94 GKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKLLSSGSFYFSSDFDLTCFAQNR 157 (1080)
T ss_pred ccccceeEEEeccchhhheecccCCCCccccccccchHHHHHHhhCCcEEEeeccchhhHHHhc
Confidence 44667788888877 67666632 256777777776653 12345555555
No 166
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.18 E-value=15 Score=47.60 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=15.4
Q ss_pred CceEeechhhhhccCCchHHHHhhhcccCC
Q 001220 194 KDIIHTVDKEITKMLDSDEVFLGLKKKFSD 223 (1121)
Q Consensus 194 kdi~~~~~~~~~~~qd~~e~~~~lk~~~~~ 223 (1121)
.-|++|.|-++.+|-+.++.|-.|.....+
T Consensus 91 ~sv~ki~~vdf~~l~~~~~dFi~l~~~~~~ 120 (1080)
T KOG0566|consen 91 ESVGKIEDVDFYSLTNTVWDFISLERSSSP 120 (1080)
T ss_pred ceeccccceeEEEeccchhhheecccCCCC
Confidence 345555555565555555555444433333
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.81 E-value=34 Score=44.96 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.9
Q ss_pred cccccc
Q 001220 996 ESDICK 1001 (1121)
Q Consensus 996 ds~IC~ 1001 (1121)
+..+|+
T Consensus 956 e~~~~r 961 (1049)
T KOG0307|consen 956 EELLQR 961 (1049)
T ss_pred HHHHHH
Confidence 444454
No 168
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=78.26 E-value=5.3 Score=49.85 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=59.4
Q ss_pred CCc-eEEeccCCCccCHHHHHHHhhccCCcc-eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-EEEEec
Q 001220 532 ASK-QLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMD 601 (1121)
Q Consensus 532 ~S~-~LWVGnL~~~vte~dL~~~F~~fGpLe-~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-RI~F~r 601 (1121)
+.+ -|=+-|++-+|+-+||.+.|.-|-.+- +|.+.+ +-|=|.|.|++.++|.+|...|+|+.+. |+-++|
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 344 788999999999999999999999887 566543 5678999999999999999999999887 655554
No 169
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=77.68 E-value=2.4 Score=51.52 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.+.|||=+++..++.++|+.-|.+.|.+..+. .....++--+|||..+-+|.+|.+.||+.+++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-ETPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-cccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 44788999999999999999999999988666632 22456677789999999999999999987766
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.39 E-value=34 Score=45.01 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=7.5
Q ss_pred CCcchhcHHHHHhhc
Q 001220 1051 DHKGFQDFVSYLKQR 1065 (1121)
Q Consensus 1051 D~k~fqDFisyLkqk 1065 (1121)
+.+-+++|+.-|.++
T Consensus 947 ~~~~i~~~~e~~~~r 961 (1049)
T KOG0307|consen 947 ELQIIETFLEELLQR 961 (1049)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555444
No 171
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=76.79 E-value=36 Score=43.07 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=25.0
Q ss_pred cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 653 LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 653 l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..|.+-+||=|-|-|||+.||.-=|.+-+|
T Consensus 37 GGe~GeaFI~FsTDeDARlaM~kdr~~i~g 66 (944)
T KOG4307|consen 37 GGEEGEAFIGFSTDEDARLAMTKDRLMIHG 66 (944)
T ss_pred cccccceEEEecccchhhhhhhhcccceec
Confidence 457888999999999999999876666655
No 172
>PRK09752 adhesin; Provisional
Probab=76.73 E-value=2.4 Score=55.51 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.6
Q ss_pred heeeeccceee
Q 001220 122 VVIYMHNSSVA 132 (1121)
Q Consensus 122 v~i~m~~~~~a 132 (1121)
+.=+|..|++|
T Consensus 50 ~~~~~~~~~~~ 60 (1250)
T PRK09752 50 LSGITQDWSIA 60 (1250)
T ss_pred ccCCcccceec
Confidence 45689999986
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=76.23 E-value=5.1 Score=39.12 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=35.7
Q ss_pred CHHHHHHHhhccCCcceEE-------------EeccCceEEEEecCHHHHHHHHHh
Q 001220 546 SEAHIRFQIDRFGPLEHFF-------------FFPIKGFALVEYINIIDAIRAREY 588 (1121)
Q Consensus 546 te~dL~~~F~~fGpLe~v~-------------~~~~rgfAFVeF~~i~DAv~A~~~ 588 (1121)
....+.++|++||.|-+.. .....++--|.|.+..+|.+|++.
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 5678889999999987764 566899999999999999999864
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=76.17 E-value=28 Score=40.92 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=42.1
Q ss_pred EEeccCCCccCHHHHHHHhhccCC--cceEEEe------ccCceEEEEecCHHHHHHHHHhhcCC
Q 001220 536 LWLGSFGPEASEAHIRFQIDRFGP--LEHFFFF------PIKGFALVEYINIIDAIRAREYIRNH 592 (1121)
Q Consensus 536 LWVGnL~~~vte~dL~~~F~~fGp--Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~ 592 (1121)
+|||||-=-.|.+||.++...-|- +-.++|| .++|||+|-.....-.++-++.|.-+
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 799999999999999998887773 3355565 27889988877666556666655543
No 175
>PRK15313 autotransport protein MisL; Provisional
Probab=75.86 E-value=5.6 Score=51.24 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=3.0
Q ss_pred CCCCCC
Q 001220 850 SSWDAG 855 (1121)
Q Consensus 850 ~~Wd~~ 855 (1121)
..|+.+
T Consensus 550 ~nWYL~ 555 (955)
T PRK15313 550 KNWYLT 555 (955)
T ss_pred CceEEE
Confidence 455554
No 176
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=75.03 E-value=13 Score=42.17 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=11.2
Q ss_pred eecccccCCccceeEEeec
Q 001220 976 WQGALCKSGVHYCTIYAQR 994 (1121)
Q Consensus 976 WqG~l~kSganyCtIl~s~ 994 (1121)
|+-.- .+.+.|=+.|+++
T Consensus 127 W~~Sd-a~~L~yG~alls~ 144 (297)
T PF07174_consen 127 WVESD-ASHLDYGSALLSK 144 (297)
T ss_pred ccccc-cceeecceeeecc
Confidence 55443 4666777777776
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=74.79 E-value=3.6 Score=43.41 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhc-cCCc---ceEEE-e-------ccCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDR-FGPL---EHFFF-F-------PIKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~-fGpL---e~v~~-~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
..+|-|-+|+|+.||+++.+++.. +|.- ..|.. + +.-+-|||.|.+.+|...=++.++|..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 458999999999999999998887 7766 33331 1 134669999999999999999999965
No 178
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=74.03 E-value=3.9 Score=45.96 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=105.5
Q ss_pred ccccccccCCceEEeccCCCccCHHH-H--HHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 524 PAAMDIFSASKQLWLGSFGPEASEAH-I--RFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 524 p~a~dv~~~S~~LWVGnL~~~vte~d-L--~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
|+..-..+.-=.+.+|++++.|..+- | ...|+.|-.|..-.+++ -+++||+.|+.-.--..+-..-.++.+.
T Consensus 87 Pt~l~~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~ 166 (290)
T KOG0226|consen 87 PTLLAPAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIG 166 (290)
T ss_pred CccCCCCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccccc
Confidence 33333336666788999999877665 4 78899999888666543 6799999998655555555555555544
Q ss_pred --EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---ccCCCccccccccCHHHH
Q 001220 596 --RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEA 669 (1121)
Q Consensus 596 --RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA 669 (1121)
.||-++-++=-+-..-- =-..-..|+-|-.++.+++|-|-.-+.+|-.+--..+ . ....+++=||-|.+++|+
T Consensus 167 ~~~VR~a~gtswedPsl~e-w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 167 KPPVRLAAGTSWEDPSLAE-WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred CcceeeccccccCCccccc-CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 24433221000000000 0013467899999999999988777777764333322 2 367788999999999999
Q ss_pred HHHHHHHhhhccc
Q 001220 670 TTAMAHLRQHRKS 682 (1121)
Q Consensus 670 ~~A~~~l~~~r~~ 682 (1121)
++||+-|+++--|
T Consensus 246 ~rAmrem~gkyVg 258 (290)
T KOG0226|consen 246 VRAMREMNGKYVG 258 (290)
T ss_pred HHHHHhhcccccc
Confidence 9999999998877
No 179
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=73.65 E-value=8.1 Score=37.38 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred eEEeccCCCccCHH----HHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 535 QLWLGSFGPEASEA----HIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 535 ~LWVGnL~~~vte~----dL~~~F~~fGp-Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.|+|-||+.+..-. -|+.+++-||= +-+| ..+.|+|-|.+.+.|.+|.+.|+|..+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 58999999986654 56788888874 3333 3699999999999999999999999776
No 180
>PRK09752 adhesin; Provisional
Probab=72.32 E-value=3.8 Score=53.82 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.9
Q ss_pred cceEEe
Q 001220 710 APIHVD 715 (1121)
Q Consensus 710 ~~lwi~ 715 (1121)
+.|||+
T Consensus 702 ~~~~~~ 707 (1250)
T PRK09752 702 SSLWVG 707 (1250)
T ss_pred heeEEc
Confidence 345554
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=72.06 E-value=3.7 Score=46.14 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=48.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c--cCceEEEEecCHHHHHHHHHhh
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P--IKGFALVEYINIIDAIRAREYI 589 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~---~--~rgfAFVeF~~i~DAv~A~~~L 589 (1121)
.....|||-||.+.|+.+.|+..|++||+|+.-.++ + .-+=.+|+|.+.-.|..|.+..
T Consensus 29 a~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 29 AMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 334689999999999999999999999999954442 2 3345699999999998888776
No 182
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=71.27 E-value=22 Score=47.28 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=10.2
Q ss_pred HHHHHHHhhccCCcce
Q 001220 547 EAHIRFQIDRFGPLEH 562 (1121)
Q Consensus 547 e~dL~~~F~~fGpLe~ 562 (1121)
+.+|+++++.--+||.
T Consensus 1502 ~ee~adl~eqltPIe~ 1517 (1958)
T KOG0391|consen 1502 DEELADLMEQLTPIER 1517 (1958)
T ss_pred HHHHHHHHhccCcHHH
Confidence 4556666666666665
No 183
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=70.73 E-value=4.5 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=44.5
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccc--cCCceeeccCCC--ccccccccCHHHHHHHHHH
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVY--KGPYMVTDLSCE--GALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~--kgpv~f~Dl~ek--~~LpVEF~t~edA~~A~~~ 675 (1121)
.+|||++++...+.++|+++|+.||. .+.+.++....+ ...+|||++.+++-+|.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 34999999999999999999999994 444455442233 6778999999988887653
No 184
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=69.48 E-value=11 Score=42.60 Aligned_cols=82 Identities=20% Similarity=0.132 Sum_probs=64.3
Q ss_pred HHHHHHHhhcCCcee----EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCc-eeeccCC
Q 001220 581 DAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSC 655 (1121)
Q Consensus 581 DAv~A~~~L~G~~~~----RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv-~f~Dl~e 655 (1121)
=|..|+++|+|+.+. ||+|+ ....|||=+.++.+.-|.++.++..|+-++.. .+.|-..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa----------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFA----------------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEee----------------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 378899999999765 89988 23789999999999999999999998855543 5566444
Q ss_pred Ccc--ccccccCHHHHHHHHHHHhh
Q 001220 656 EGA--LLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 656 k~~--LpVEF~t~edA~~A~~~l~~ 678 (1121)
+.+ =.+||.+--.|..|..-.+.
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhcc
Confidence 443 36999999888888766643
No 185
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=68.03 E-value=6.3 Score=45.72 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=56.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee--ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~--Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.-|.|+|-||+=..-+-+|-.=|.+||.+-+++|+ +-.+|+.=||-||+++||-+|-+-|++--.+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 35899999999998888999999999988777554 4778899999999999999999999886655
No 186
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=67.82 E-value=6.6 Score=47.57 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=10.4
Q ss_pred cccCCccceEEEEeccCCc
Q 001220 1098 SIAPNSSDCLVALVLPKET 1116 (1121)
Q Consensus 1098 sl~~d~~eCLIalvlP~e~ 1116 (1121)
-+..|..|-|+. .+|++.
T Consensus 383 ~~~KDGIEK~L~-MmPt~e 400 (817)
T KOG1925|consen 383 AVSKDGIEKLLT-MMPTEE 400 (817)
T ss_pred hcchhhHHHHHH-hCCCHH
Confidence 355666665555 366654
No 187
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=66.69 E-value=60 Score=41.56 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=14.1
Q ss_pred ccccccCCCCCCCCCCCCCCCcceeeeec
Q 001220 493 GASNALLSPNHHLPVPYASTTSQIVWYFD 521 (1121)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 521 (1121)
|.-|+-++.-=++|.+.+.+.+++.=|.|
T Consensus 268 GGI~~~L~~y~glpal~~~~~~~~a~~vD 296 (759)
T PF05518_consen 268 GGIHQSLRQYSGLPALASPAWSSVAAWVD 296 (759)
T ss_pred CCcccCccccCCCccccccchhhHhhHhH
Confidence 33344444333456666655555544444
No 188
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=66.24 E-value=1.1e+02 Score=37.61 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=12.3
Q ss_pred ccCHHHHHHHHHHHhhh
Q 001220 663 FRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 663 F~t~edA~~A~~~l~~~ 679 (1121)
+|+++.|+.+.++|=+.
T Consensus 214 ~eki~~Ai~vienli~~ 230 (554)
T KOG0119|consen 214 QEKIKKAIAVIENLIQS 230 (554)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46677788888877664
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=63.43 E-value=15 Score=45.18 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=60.1
Q ss_pred ecCCccccccccCCceEEeccCCCccCHHHHHHHhhc--cCCcceEEEeccCceEEEEecCHHHHHHHHHhh-------c
Q 001220 520 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDR--FGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-------R 590 (1121)
Q Consensus 520 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~--fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L-------~ 590 (1121)
+|.+---.--...-|-+-+-.|+....+++++.+|.- +=+.-+.-|+..-++ ||.|++..||-.|.++| |
T Consensus 162 vDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 162 VDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred eccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhc
Confidence 3433333444556788999999999999999999975 566667777766555 99999999999998877 5
Q ss_pred CCcee-EEE
Q 001220 591 NHFSW-RVK 598 (1121)
Q Consensus 591 G~~~~-RI~ 598 (1121)
|+.++ ||+
T Consensus 241 gKpImARIK 249 (684)
T KOG2591|consen 241 GKPIMARIK 249 (684)
T ss_pred Ccchhhhhh
Confidence 77666 776
No 190
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.26 E-value=17 Score=44.73 Aligned_cols=19 Identities=53% Similarity=0.650 Sum_probs=11.9
Q ss_pred HHhccCC--chHHHHHHhhcc
Q 001220 87 LITASRG--CTSVQRIVADLV 105 (1121)
Q Consensus 87 li~~s~g--c~svqri~a~li 105 (1121)
|++.-.| -|++=|++|..+
T Consensus 42 Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 42 LFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 5666554 467777776655
No 191
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.18 E-value=4.6e+02 Score=34.85 Aligned_cols=7 Identities=29% Similarity=0.320 Sum_probs=2.7
Q ss_pred hhhccCC
Q 001220 1083 LMFILPY 1089 (1121)
Q Consensus 1083 lL~LlP~ 1089 (1121)
.|+-+|.
T Consensus 446 ~l~~lp~ 452 (1007)
T KOG1984|consen 446 VLEDLPR 452 (1007)
T ss_pred HHhhcCc
Confidence 3333343
No 192
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.99 E-value=34 Score=42.24 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=4.1
Q ss_pred cceeeeccc
Q 001220 972 LQYQWQGAL 980 (1121)
Q Consensus 972 i~~~WqG~l 980 (1121)
+.-.|+-.+
T Consensus 467 ~~~~w~~~~ 475 (585)
T PRK14950 467 LEAIWKQIL 475 (585)
T ss_pred HHHHHHHHH
Confidence 344465443
No 193
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.84 E-value=13 Score=43.36 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=50.3
Q ss_pred CceEEeccCCCccCHHHH------HHHhhccCCcceEEEec-------cCceE--EEEecCHHHHHHHHHhhcCCce
Q 001220 533 SKQLWLGSFGPEASEAHI------RFQIDRFGPLEHFFFFP-------IKGFA--LVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL------~~~F~~fGpLe~v~~~~-------~rgfA--FVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
-+-+||-.|++-+..++. .+-|++||+|..+.+-+ --+-| ||.|-.-+||.+++...+|+.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 356799999999888873 57899999999998843 12234 9999999999999999999754
No 194
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.33 E-value=82 Score=40.79 Aligned_cols=16 Identities=19% Similarity=0.810 Sum_probs=10.4
Q ss_pred cccccccCCCCCCCCc
Q 001220 998 DICKYTHDISEPAEWP 1013 (1121)
Q Consensus 998 ~IC~Ai~a~sepS~Wp 1013 (1121)
.+|...|.+++.-.|.
T Consensus 244 NlC~~~NdvP~~f~~~ 259 (887)
T KOG1985|consen 244 NLCGRVNDVPDDFDWD 259 (887)
T ss_pred chhhhhcCCcHHhhcC
Confidence 4666666666666665
No 195
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=56.66 E-value=30 Score=41.45 Aligned_cols=12 Identities=0% Similarity=0.193 Sum_probs=7.3
Q ss_pred HHhhhccCCchh
Q 001220 1081 ARLMFILPYSQD 1092 (1121)
Q Consensus 1081 ~rlL~LlP~SeE 1092 (1121)
.+.+|++....+
T Consensus 338 ~sm~~~~~~~~~ 349 (409)
T KOG4590|consen 338 PSMLYHCMSDDE 349 (409)
T ss_pred cchhhccccccc
Confidence 355777766655
No 196
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.12 E-value=24 Score=41.28 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=30.6
Q ss_pred chhcHHHHHhhcCccceeeccchhh---HHHHhhhccCCchhhhc
Q 001220 1054 GFQDFVSYLKQRECAGVIKIPAVKS---IWARLMFILPYSQDICS 1095 (1121)
Q Consensus 1054 ~fqDFisyLkqkd~AGViKips~k~---~w~rlL~LlP~SeEvcs 1095 (1121)
..+|-|-+|+..=+.|||.+...=. .++|=+|++=..-+-|+
T Consensus 314 aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r 358 (365)
T KOG2391|consen 314 AIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILRATMQKCR 358 (365)
T ss_pred HHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888866679988876644 67777787766655554
No 197
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=56.03 E-value=9.9 Score=43.63 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=39.2
Q ss_pred hHHHHHhhhcccccCCcee-ec--cCC--CccccccccCHHHHHHHHHHHhhhccc
Q 001220 632 KDEILHESYKVVYKGPYMV-TD--LSC--EGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 632 keELf~E~~kag~kgpv~f-~D--l~e--k~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+|+..|+.+.+..+.+.+ .+ +.+ .-.+||||+.+|+|+.|..-|||.--|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 4567788999998888733 22 222 346799999999999999999987654
No 198
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=53.72 E-value=15 Score=42.96 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=49.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHH
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l 676 (1121)
.+....||||+..+.+..-+|-.-|-++|.+.- +..+..+..+||+|-|-+.|..|++-+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--i~~~~~~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--IRILPRKGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeee--EEeecccccceeeehhhHHHHHHHHhh
Confidence 357899999999999999888888888665554 455777889999999999999888754
No 199
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=53.05 E-value=59 Score=40.27 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.3
Q ss_pred CCCcccccc
Q 001220 729 FGSPHTAPF 737 (1121)
Q Consensus 729 fGei~rfqi 737 (1121)
.|.-+||+.
T Consensus 40 WG~~~Ry~~ 48 (582)
T PF03276_consen 40 WGPGDRYQL 48 (582)
T ss_pred CCCccceeE
Confidence 355555443
No 200
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=51.78 E-value=32 Score=42.06 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=85.0
Q ss_pred eeeecCCccccc---cccCCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe------ccCceEEEEecCHHHHHHHH
Q 001220 517 VWYFDEDPAAMD---IFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF------PIKGFALVEYINIIDAIRAR 586 (1121)
Q Consensus 517 ~~~~~g~p~a~d---v~~~S~~LWVGnL~~~vte~dL~~~F~-~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~ 586 (1121)
=|.+.-.-+.+| .+-+.|+++||.|+.-++..||...|+ -||-+.-|-+. .++|-+=|.|.|-.-=++|+
T Consensus 351 PW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 351 PWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred eeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 366655555555 456799999999999999999999999 89999988873 27999999999988888887
Q ss_pred HhhcCCceeEEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhccc---ccCCceeeccCCCccccccc
Q 001220 587 EYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV---YKGPYMVTDLSCEGALLMEF 663 (1121)
Q Consensus 587 ~~L~G~~~~RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag---~kgpv~f~Dl~ek~~LpVEF 663 (1121)
.+ +...|+=.|. .|.| .|.+.+-+|++.+|....- +++|+ -.++.-+..|
T Consensus 431 sa----rFvql~h~d~---------------~KRV---EIkPYv~eDq~CdeC~g~~c~~q~aPf-----FC~n~~C~QY 483 (520)
T KOG0129|consen 431 SA----RFVQLDHTDI---------------DKRV---EIKPYVMEDQLCDECGGRRCGGQFAPF-----FCRNATCFQY 483 (520)
T ss_pred hh----heEEEecccc---------------ceee---eecceeccccchhhhcCeeccCccCCc-----ccCCccHHhh
Confidence 65 1111211111 2222 3677888999999998833 66663 2344444555
Q ss_pred c
Q 001220 664 R 664 (1121)
Q Consensus 664 ~ 664 (1121)
+
T Consensus 484 Y 484 (520)
T KOG0129|consen 484 Y 484 (520)
T ss_pred h
Confidence 4
No 201
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=49.98 E-value=15 Score=41.05 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=53.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
+--..|||||..=...||+|-.=|+.||.+....+ +| ..+|+.-+|-|+..|.|.+|-+.-+-
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p 76 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP 76 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC
Confidence 34567999999999999999999999997776644 44 78899999999999999999876543
No 202
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=49.49 E-value=14 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=11.8
Q ss_pred ccceEEEccCCCc-chhHHHHHhh
Q 001220 617 SCFHVYVGNIPNQ-WAKDEILHES 639 (1121)
Q Consensus 617 ~s~~LwVG~iss~-~~keELf~E~ 639 (1121)
+....=|+..+.. ..-|++..|.
T Consensus 37 ~~~~~~v~~~p~~i~Ayd~~i~~~ 60 (480)
T KOG2675|consen 37 AASAGDVAAVPPSIRAYDDLISEP 60 (480)
T ss_pred cccccccccCchHHHHHHHHHHhH
Confidence 3444455666654 4555555543
No 203
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=48.68 E-value=67 Score=31.29 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=45.8
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEEE
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 598 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~ 598 (1121)
+++-=..+..=-..||..+|..||.|.==|+- -.-|||...+.+.|..|+..+.=...++|.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 44433377777889999999999999866663 478999999999999999999766556654
No 204
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.99 E-value=43 Score=40.62 Aligned_cols=7 Identities=29% Similarity=0.358 Sum_probs=3.8
Q ss_pred EEEEecc
Q 001220 596 RVKFMDV 602 (1121)
Q Consensus 596 RI~F~r~ 602 (1121)
+|||-..
T Consensus 263 vvRFnS~ 269 (483)
T KOG2236|consen 263 VVRFNSE 269 (483)
T ss_pred EEecCch
Confidence 5666543
No 205
>PLN00131 hypothetical protein; Provisional
Probab=47.91 E-value=35 Score=36.33 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=39.6
Q ss_pred CCcccccccccCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHh-hchHHHHHHHH
Q 001220 5 EQPLKKRKLYDLPPESPKPVE---GPQSDVVPPQTPPPLSQDEIQSRR-RNKDEIRSVYE 60 (1121)
Q Consensus 5 ~~p~kkrkl~~~p~~~p~p~~---~~~~~~~~~~~~~p~~~ee~~~~~-rn~~e~r~v~~ 60 (1121)
..-+-||-..++-+. |||.. .+|++-.-|.++||+...+.+.|| |-.||+|-+.+
T Consensus 89 ~~~~SrrP~~DLNst-pqpeldlnqpaaheqepepapplddqdlltkrkrvseelrlllq 147 (218)
T PLN00131 89 DAGPSRRPVLDLNST-PQPELDLNQPAAHEQEPEPAPPLDDQDLLTKRKRVSEELRLLLQ 147 (218)
T ss_pred CCCcCcCCcccCCCC-CCcccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345677888887776 66665 344455577889999888887766 67889988775
No 206
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=47.27 E-value=40 Score=33.00 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=53.0
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCc-------eeeccCCCccccccccCHHHHHHHHHHHhhhccccCC
Q 001220 620 HVYVGNIPNQWAKDEILHESYKVVYKGPY-------MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSRSN 685 (1121)
Q Consensus 620 ~LwVG~iss~~~keELf~E~~kag~kgpv-------~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~rs~ 685 (1121)
.|-|=+||+..+.++|..+++.. .++.. .|......++++|-|.++++|..-++.+++++-...+
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~-~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~ 74 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEH-FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN 74 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh-ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC
Confidence 46678999999999999999875 34444 4444567899999999999999999999999977544
No 207
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=47.01 E-value=4e+02 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=8.8
Q ss_pred HHHhHHHHHHhcCch--HHHHHH
Q 001220 235 FRLLSLLQIFFSSPK--NLLAAC 255 (1121)
Q Consensus 235 ~~~l~ll~if~~~p~--~~l~ac 255 (1121)
+|.+.+=..|++-.. |||-.|
T Consensus 523 ~R~~t~Rd~Fl~r~~vmnLlm~~ 545 (1605)
T KOG0260|consen 523 VRKMTKRDVFLNRAQVMNLLMYV 545 (1605)
T ss_pred HHHHhhHhhhhcHHHHHHHHhhc
Confidence 333333334444332 444455
No 208
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=46.84 E-value=24 Score=42.20 Aligned_cols=90 Identities=23% Similarity=0.459 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccceee
Q 001220 53 DEIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVA 132 (1121)
Q Consensus 53 ~e~r~v~~~y~~~k~~~~~~~~~~~~~leq~y~~li~~s~gc~svqri~a~liprya~~cptaleaa~kv~i~m~~~~~a 132 (1121)
+-|.++|++|.||-..-.+ . +=-++|.-+|.++.|-+--+|+.|-+||||--|-|.--.-|.-+-.|.
T Consensus 2 ~~ie~ly~~~e~l~~a~dk-----~-q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~------ 69 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDK-----S-QHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDL------ 69 (460)
T ss_pred chHHHHHHHHHHHHhhchh-----h-hhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhcc------
Confidence 3588999999998543211 1 344789999999999999999999999999999886444444333332
Q ss_pred eeccCCCCcchhhhhhhhhhccccccccc
Q 001220 133 LINRGEDADGVAFQTASACIFGLGDICRT 161 (1121)
Q Consensus 133 ~~~rged~~gva~~ta~aci~gl~dic~~ 161 (1121)
. .+|--||.-| -|-||--.|-.
T Consensus 70 -~--ed~d~~ir~q----aik~lp~fc~~ 91 (460)
T KOG2213|consen 70 -C--EDDDVGIRRQ----AIKGLPLFCKG 91 (460)
T ss_pred -c--cccchhhHHH----HHhccchhccC
Confidence 1 1222244443 57788888864
No 209
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=46.61 E-value=22 Score=30.84 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=37.1
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHH
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAM 673 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~ 673 (1121)
+.|=|-|.+.. ..++++.-|..+|.+..+.+. ...+.++|.|.+..||..|+
T Consensus 2 ~wI~V~Gf~~~-~~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD-LAEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch-HHHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 34556666644 447777777777666654443 46899999999999999884
No 210
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=46.55 E-value=55 Score=38.24 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=4.6
Q ss_pred CcccCCCcc
Q 001220 868 PNVVPNTFH 876 (1121)
Q Consensus 868 p~v~Pn~~~ 876 (1121)
.+-||-+|.
T Consensus 68 ~pampqnfQ 76 (407)
T PF04625_consen 68 GPAMPQNFQ 76 (407)
T ss_pred cccchhhcc
Confidence 344566664
No 211
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=46.09 E-value=97 Score=38.54 Aligned_cols=9 Identities=11% Similarity=-0.171 Sum_probs=3.5
Q ss_pred ccCCCCCCC
Q 001220 809 MVNPSQGGN 817 (1121)
Q Consensus 809 ~~~~~~~g~ 817 (1121)
+-|+...+.
T Consensus 114 ~gD~ys~~F 122 (582)
T PF03276_consen 114 PGDPYSLSF 122 (582)
T ss_pred cCCcccccc
Confidence 333333344
No 212
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=45.67 E-value=18 Score=39.96 Aligned_cols=64 Identities=20% Similarity=0.071 Sum_probs=52.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
...+.+|||++.-.++.+++..++..-+....+++ .| ...|+.+++||.+.+.+..|.+ |++-.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~ 166 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE 166 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc
Confidence 46889999999999999999999999887764433 22 3468999999999999999988 77644
No 213
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.94 E-value=2.3e+02 Score=37.04 Aligned_cols=9 Identities=22% Similarity=0.109 Sum_probs=4.5
Q ss_pred cccCCCCCC
Q 001220 1044 LVPSSPGDH 1052 (1121)
Q Consensus 1044 LvPas~~D~ 1052 (1121)
++|..+..+
T Consensus 282 iAP~eYmlR 290 (887)
T KOG1985|consen 282 IAPSEYMLR 290 (887)
T ss_pred ecCcccccC
Confidence 555555443
No 214
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=43.23 E-value=38 Score=33.11 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=37.4
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeeccC-CCccccccccCHHHHHHHHHHHhhh
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~-ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
+.|.|-++....++|+|-..+..++ ++.++|+. .....+|=|.+.++|..|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g---~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG---EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS-----EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC---CcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 4677888889999999999888755 77788754 4678899999999999999988775
No 215
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=43.22 E-value=2.8e+02 Score=36.02 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=4.7
Q ss_pred HHhhhcccCC
Q 001220 214 FLGLKKKFSD 223 (1121)
Q Consensus 214 ~~~lk~~~~~ 223 (1121)
|..|-+|+++
T Consensus 83 f~glarKysn 92 (759)
T PF05518_consen 83 FEGLARKYSN 92 (759)
T ss_pred HHHHHHHhcc
Confidence 4444444444
No 216
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=41.39 E-value=16 Score=41.25 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=40.9
Q ss_pred HHHHHhhh-cccccCCceeec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 633 DEILHESY-KVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 633 eELf~E~~-kag~kgpv~f~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|++|.|+. +.+.+..+.+-+ ..-.+.++|.|+.-|+|..|...||+...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~ 136 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc
Confidence 78999998 888777765533 334678999999999999999999997755
No 217
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=39.22 E-value=85 Score=36.03 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=17.9
Q ss_pred eeeecccccCCccceeEEeeccccccc
Q 001220 974 YQWQGALCKSGVHYCTIYAQREESDIC 1000 (1121)
Q Consensus 974 ~~WqG~l~kSganyCtIl~s~lds~IC 1000 (1121)
+...|..-+.|-..|.|-.-+...+++
T Consensus 219 ~VkvGDsVkkGQvLavIEAMKmeieV~ 245 (274)
T PLN02983 219 FVKVGDKVQKGQVVCIIEAMKLMNEIE 245 (274)
T ss_pred eeCCCCEecCCCEEEEEEeeceeeEEe
Confidence 455677777777777777766555444
No 218
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=39.05 E-value=20 Score=42.52 Aligned_cols=110 Identities=10% Similarity=0.154 Sum_probs=65.4
Q ss_pred ecccccCCccceeEEeecccccccccccCCCCCCCCcccccCCccccccccccccccCCCCcccccc------ccc----
Q 001220 977 QGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTKRTDFRHVKSTFTSTPPNKREVCR------LVP---- 1046 (1121)
Q Consensus 977 qG~l~kSganyCtIl~s~lds~IC~Ai~a~sepS~Wps~eD~t~RtDfq~Le~TFSstPpkKREV~R------LvP---- 1046 (1121)
++...|+..||-+|....+ ..++|..+.+.. ..|++.++.+|+.++..+..-.. ..+
T Consensus 5 ~P~~klK~l~W~ki~~~~~------------~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~ 71 (432)
T smart00498 5 KPKKKLKPLHWDKLNPLDP------------RGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVS 71 (432)
T ss_pred CCCCCCcCcCceeCCCccc------------cCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccc
Confidence 3445678899987766542 248999766654 78899999999975544321110 000
Q ss_pred C--CCCCCcchhcHHHHHhhcCc------cceeeccc--h-hhHHHHhhhccCCchhhhccccc
Q 001220 1047 S--SPGDHKGFQDFVSYLKQREC------AGVIKIPA--V-KSIWARLMFILPYSQDICSMLSI 1099 (1121)
Q Consensus 1047 a--s~~D~k~fqDFisyLkqkd~------AGViKips--~-k~~w~rlL~LlP~SeEvcs~Lsl 1099 (1121)
. .--|.|.-|.....|+.... ..+..++. . ......|+.++|..||+......
T Consensus 72 ~~v~ild~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~ 135 (432)
T smart00498 72 QEFKILDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREY 135 (432)
T ss_pred cceEeechhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHh
Confidence 0 11244556666666665531 12333332 1 12778899999999998775443
No 219
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=38.55 E-value=2.6e+02 Score=36.29 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=34.7
Q ss_pred eEEeccCCCcc-------CHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHh
Q 001220 535 QLWLGSFGPEA-------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREY 588 (1121)
Q Consensus 535 ~LWVGnL~~~v-------te~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~ 588 (1121)
--||-.|-|+- .|..+..+.++-|==|+|++.|. ||| ||..-|--.-+-+
T Consensus 581 P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRA-GfA---YRr~F~kF~qRya 637 (1106)
T KOG0162|consen 581 PHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRA-GFA---YRRAFDKFAQRYA 637 (1106)
T ss_pred cceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhh-hhH---HHHHHHHHHHHhe
Confidence 34666665554 46788899999999999999774 777 4655554444333
No 220
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=38.31 E-value=22 Score=41.44 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=47.6
Q ss_pred CceEEeccCCCccCHHHHHH---HhhccCCcceEEEeccCc---------eEEEEecCHHHHHHHHHhhcCCc
Q 001220 533 SKQLWLGSFGPEASEAHIRF---QIDRFGPLEHFFFFPIKG---------FALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~---~F~~fGpLe~v~~~~~rg---------fAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
-+-+||-.|++.+..+++.+ -|++||.|-.|..++.++ -++|-|+..+||.+|+..-+|..
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 35678888888865555543 588889999999877442 37999999999999999988853
No 221
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=37.06 E-value=46 Score=39.15 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=56.3
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.+-..++||=.|+..+++.+|.+.|..+|.|.. |++| .++|=|.|-|+|.--|.+|+...+|+..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 444567888899999999999999999999852 4444 48999999999999999999999998655
No 222
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=36.72 E-value=1.4e+03 Score=31.94 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=12.7
Q ss_pred eeccCCCCcchhhhhhh-hhhccccccc
Q 001220 133 LINRGEDADGVAFQTAS-ACIFGLGDIC 159 (1121)
Q Consensus 133 ~~~rged~~gva~~ta~-aci~gl~dic 159 (1121)
+|.+||-.-||--+-++ +-+-||++++
T Consensus 604 lie~g~l~~g~l~Kkt~G~s~g~lvh~i 631 (1605)
T KOG0260|consen 604 LIEGGELLIGVLCKKTVGSSAGGLVHVI 631 (1605)
T ss_pred EEeCCceEEEEeeccccccccCceEEEe
Confidence 45555555555433322 3333455554
No 223
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.33 E-value=1.1e+02 Score=38.51 Aligned_cols=19 Identities=47% Similarity=0.564 Sum_probs=12.3
Q ss_pred HHHhccCCc--hHHHHHHhhc
Q 001220 86 SLITASRGC--TSVQRIVADL 104 (1121)
Q Consensus 86 ~li~~s~gc--~svqri~a~l 104 (1121)
+|++.-+|+ |++-|++|..
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 477777776 6666666653
No 224
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=97 Score=37.85 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHHHhhccCCcce
Q 001220 548 AHIRFQIDRFGPLEH 562 (1121)
Q Consensus 548 ~dL~~~F~~fGpLe~ 562 (1121)
.-|=.+|+-||++.+
T Consensus 245 ~~lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 245 TALGQIFEIFGPVKN 259 (483)
T ss_pred ccchhhhhhhcccCC
Confidence 346678899999875
No 225
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=36.16 E-value=25 Score=42.56 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=4.6
Q ss_pred ceeeeccccc
Q 001220 973 QYQWQGALCK 982 (1121)
Q Consensus 973 ~~~WqG~l~k 982 (1121)
+-.|+|.|+-
T Consensus 121 dg~~~GlIAY 130 (465)
T PF01690_consen 121 DGKWDGLIAY 130 (465)
T ss_pred CCceeeeEEe
Confidence 3445554443
No 226
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=35.61 E-value=68 Score=39.77 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=56.6
Q ss_pred ccccccCCceEE-ecc-CCCccCHHHHHHHh----hccCCcceEEEe----c-cCceEEEEecCHHHHHHHHHhhc--CC
Q 001220 526 AMDIFSASKQLW-LGS-FGPEASEAHIRFQI----DRFGPLEHFFFF----P-IKGFALVEYINIIDAIRAREYIR--NH 592 (1121)
Q Consensus 526 a~dv~~~S~~LW-VGn-L~~~vte~dL~~~F----~~fGpLe~v~~~----~-~rgfAFVeF~~i~DAv~A~~~L~--G~ 592 (1121)
++.|+.+..++. +|. ...+++.-||..+| +-+|=|..+++. + .+.++++.|.+++||.+|+..+. |-
T Consensus 257 ~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~ 336 (555)
T PLN02805 257 SLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGI 336 (555)
T ss_pred EEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCC
Confidence 566776666554 442 22334556888876 468888888874 3 56788999999999999999976 44
Q ss_pred ceeEEEEeccc
Q 001220 593 FSWRVKFMDVG 603 (1121)
Q Consensus 593 ~~~RI~F~r~~ 603 (1121)
.+..+||+|..
T Consensus 337 ~psa~ElmD~~ 347 (555)
T PLN02805 337 QVSRVELLDEV 347 (555)
T ss_pred CcEEEEEECHH
Confidence 56699999883
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.17 E-value=11 Score=43.01 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=38.8
Q ss_pred cCHHHHHHHhhccCCcceEEEe-----c----c-------Cce---------EEEEecCHHHHHHHHHhhcCCce
Q 001220 545 ASEAHIRFQIDRFGPLEHFFFF-----P----I-------KGF---------ALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 545 vte~dL~~~F~~fGpLe~v~~~-----~----~-------rgf---------AFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
-+|+-|+..|+.||.|.+|-+- + + .|| |||.|..-.--+.|+.+|+|...
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 5789999999999999998761 1 1 233 56788888888889999998754
No 228
>PHA03378 EBNA-3B; Provisional
Probab=35.16 E-value=5.2e+02 Score=33.51 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=15.7
Q ss_pred HHHhhccCCcceEEEec--cCceEEEEec
Q 001220 551 RFQIDRFGPLEHFFFFP--IKGFALVEYI 577 (1121)
Q Consensus 551 ~~~F~~fGpLe~v~~~~--~rgfAFVeF~ 577 (1121)
..+.+-|+.|..||.-. ..-|+||+|.
T Consensus 257 FDlvss~rSL~~IWi~vLt~nRVaFveFm 285 (991)
T PHA03378 257 FDLVSSGNTLYAIWIGLGTRNRVAFVEFV 285 (991)
T ss_pred hhHHhhcccHHHHHhcccchhhhHHHHHH
Confidence 33445566677676532 3367777775
No 229
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=35.15 E-value=2.5e+02 Score=32.02 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=5.3
Q ss_pred hccCCchhh
Q 001220 1085 FILPYSQDI 1093 (1121)
Q Consensus 1085 ~LlP~SeEv 1093 (1121)
+|.++.|+|
T Consensus 314 klihpdedi 322 (341)
T KOG2893|consen 314 KLIHPDEDI 322 (341)
T ss_pred eeeCCcccc
Confidence 666666554
No 230
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.24 E-value=18 Score=43.36 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHhhc----hHHHHHHHHHHHH--HHHHHhhcccCCchHHHHHHH----------HHHhccCCchHHHHH
Q 001220 37 PPPLSQDEIQSRRRN----KDEIRSVYECYRR--LKACIAQKDARRLPELEQAYL----------SLITASRGCTSVQRI 100 (1121)
Q Consensus 37 ~~p~~~ee~~~~~rn----~~e~r~v~~~y~~--~k~~~~~~~~~~~~~leq~y~----------~li~~s~gc~svqri 100 (1121)
.+++.++=+..+.++ .+++++=+..||- ||..|.+ -+-+|=+-|. .-..+=-=|||..-+
T Consensus 111 ~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRr----a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv 186 (466)
T KOG0686|consen 111 GYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRR----ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV 186 (466)
T ss_pred ccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHH----HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH
Confidence 556666655555544 5788888888873 6665543 3344555554 222211145554443
Q ss_pred HhhccccccccCchhHhhhhhheeeeccce--eeeeccCCCC-cc---hhhh-hhh-hhhccccccccc
Q 001220 101 VADLVPRYALYCPTALEAATEVVIYMHNSS--VALINRGEDA-DG---VAFQ-TAS-ACIFGLGDICRT 161 (1121)
Q Consensus 101 ~a~liprya~~cptaleaa~kv~i~m~~~~--~a~~~rged~-~g---va~~-ta~-aci~gl~dic~~ 161 (1121)
+= .--...+|.|.|-||+ ++.+++-+-. ++ ++.| ++| -|..||+.+|--
T Consensus 187 In------------m~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lk 243 (466)
T KOG0686|consen 187 IN------------MCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLK 243 (466)
T ss_pred HH------------HHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHH
Confidence 31 1236789999999998 4555555544 11 1111 122 399999999864
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.11 E-value=66 Score=37.21 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=41.9
Q ss_pred CCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEeccCceEEEEecCH
Q 001220 522 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINI 579 (1121)
Q Consensus 522 g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe-~v~~~~~rgfAFVeF~~i 579 (1121)
|.+++-| +|||||+.++.-.||..++.+-|-.- ++.-.-.+|-||..|-|-
T Consensus 326 ~a~~~~d-------i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTD-------IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccc-------eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 5566767 79999999999999999999887655 455556899999999874
No 232
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=33.05 E-value=15 Score=40.90 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=46.2
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCc------eeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv------~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+-.-+.||||+..+.++ |||+.|+-.. -||+ ...|...+ .++|+|+.----.-||..||+-+..
T Consensus 6 ae~drtl~v~n~~~~v~-eelL~Elfiq--aGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVS-EELLSELFIQ--AGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred cchhhHHHHHhhhhhhh-HHHHHHHhhc--cCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 44678999999998876 5555665442 2332 23444444 7999999988888999999997765
No 233
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=32.31 E-value=6.3e+02 Score=31.66 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=11.5
Q ss_pred ccccccCHHHHHHHHHHHhhhc
Q 001220 659 LLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 659 LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.+|.=+|.|---.|.+.+...-
T Consensus 207 ~~Isadt~eki~~Ai~vienli 228 (554)
T KOG0119|consen 207 CLISADTQEKIKKAIAVIENLI 228 (554)
T ss_pred EEEecchHHHHHHHHHHHHHHH
Confidence 3455555555555555555444
No 234
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=32.14 E-value=58 Score=39.69 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=9.8
Q ss_pred ccccCCCCcccccccccCCCCCC
Q 001220 1030 TFTSTPPNKREVCRLVPSSPGDH 1052 (1121)
Q Consensus 1030 TFSstPpkKREV~RLvPas~~D~ 1052 (1121)
-|....-.+-..-.++|...+.+
T Consensus 79 ~w~snn~~~A~p~f~~Pvp~G~~ 101 (465)
T PF01690_consen 79 GWYSNNSVKAIPMFVFPVPKGKW 101 (465)
T ss_pred eeEecCcceeeeEEEEecCCceE
Confidence 33333333444444555544444
No 235
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.87 E-value=64 Score=38.27 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=55.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+-|-+.|+|-..-+..++|+|.-=|-.||.+..+.+ .| +..=.++||||++-|..-+|..-|.--.+-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 448999999999999999999988888887777754 33 555578899999999999998888765444
No 236
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=31.76 E-value=49 Score=38.90 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=45.2
Q ss_pred ccceeccccceEEEccCCCcchhHH---------HHHhhhcccccCCc-eeeccC---CCccccccccCHHHHHHHHHHH
Q 001220 610 INGVAVGSCFHVYVGNIPNQWAKDE---------ILHESYKVVYKGPY-MVTDLS---CEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 610 ~~Gv~~~~s~~LwVG~iss~~~keE---------Lf~E~~kag~kgpv-~f~Dl~---ek~~LpVEF~t~edA~~A~~~l 676 (1121)
+.|+-|..-+-+||-||++.+..|| .|..+.++.++.-- ....+. +--+.+|-|-+-|||+++.+.+
T Consensus 106 lsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 106 LSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred cccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh
Confidence 3444466788999999999988887 34444443321100 000111 1235699999999999999988
Q ss_pred hhh
Q 001220 677 RQH 679 (1121)
Q Consensus 677 ~~~ 679 (1121)
.+-
T Consensus 186 Dgs 188 (480)
T COG5175 186 DGS 188 (480)
T ss_pred ccc
Confidence 774
No 237
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=30.18 E-value=5.2e+02 Score=33.88 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHhccCCchHHHHHHhhccccc
Q 001220 86 SLITASRGCTSVQRIVADLVPRY 108 (1121)
Q Consensus 86 ~li~~s~gc~svqri~a~lipry 108 (1121)
++-.+|-|-++||+| -|+|-+-
T Consensus 127 YIs~vS~~g~kvq~v-kdiiL~s 148 (1106)
T KOG0162|consen 127 YISRVSGGGEKVQHV-KDIILQS 148 (1106)
T ss_pred HHHHhccCCcchhhh-hhHhhcc
Confidence 333455788999995 5776543
No 238
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.41 E-value=1.5e+03 Score=30.37 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=8.0
Q ss_pred HHHHhhhccCCchhhhcc
Q 001220 1079 IWARLMFILPYSQDICSM 1096 (1121)
Q Consensus 1079 ~w~rlL~LlP~SeEvcs~ 1096 (1121)
..+-++|-+|.+.+++++
T Consensus 289 ~mr~T~Y~iP~T~Dl~~a 306 (1007)
T KOG1984|consen 289 FMRCTMYTIPCTNDLLKA 306 (1007)
T ss_pred hheeecccCCccHhHHHh
Confidence 333344444444444443
No 239
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.01 E-value=1.4e+02 Score=35.37 Aligned_cols=6 Identities=33% Similarity=0.766 Sum_probs=2.8
Q ss_pred HHHHHh
Q 001220 1058 FVSYLK 1063 (1121)
Q Consensus 1058 FisyLk 1063 (1121)
|-+|||
T Consensus 333 l~~yLr 338 (365)
T KOG2391|consen 333 LDQYLR 338 (365)
T ss_pred HHHHHH
Confidence 444444
No 240
>PHA03378 EBNA-3B; Provisional
Probab=28.76 E-value=5.4e+02 Score=33.42 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=5.6
Q ss_pred CCCccccccccCC
Q 001220 836 QPTQYLHPVYLPP 848 (1121)
Q Consensus 836 q~~sf~rPvy~pP 848 (1121)
|+-.|-..|++.|
T Consensus 639 qp~~f~~~~~~tp 651 (991)
T PHA03378 639 QPITFNVLVFPTP 651 (991)
T ss_pred cccccccccCCCC
Confidence 3334444444443
No 241
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=28.17 E-value=1.1e+03 Score=32.92 Aligned_cols=19 Identities=5% Similarity=-0.249 Sum_probs=10.2
Q ss_pred chhhhhccCCchHHHHhhh
Q 001220 200 VDKEITKMLDSDEVFLGLK 218 (1121)
Q Consensus 200 ~~~~~~~~qd~~e~~~~lk 218 (1121)
|.+-.++.+||..++..++
T Consensus 1086 gsr~pv~~ddpa~ltp~sg 1104 (1958)
T KOG0391|consen 1086 GSRPPVGGDDPAPLTPQSG 1104 (1958)
T ss_pred ccCCCCCCCCccccccccC
Confidence 4455555555555555543
No 242
>PF15449 Retinal: Retinal protein
Probab=27.30 E-value=4.1e+02 Score=35.92 Aligned_cols=13 Identities=15% Similarity=0.651 Sum_probs=7.9
Q ss_pred hhhhhhhhhhccC
Q 001220 180 FHNVLDFFISSFD 192 (1121)
Q Consensus 180 ~~~vl~ff~~~f~ 192 (1121)
.|-.++|++.-||
T Consensus 221 lq~mv~fl~l~fe 233 (1287)
T PF15449_consen 221 LQPMVSFLLLRFE 233 (1287)
T ss_pred HHHHHHHHHHHHH
Confidence 4556677766664
No 243
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=25.72 E-value=2.2e+02 Score=26.35 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=39.1
Q ss_pred ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 544 EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 544 ~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+++-.|++..+.+|+-.+ |.. -.-|| ||-|.|..||++-.+..+|+.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~-d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRD-DRTGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEe-cCCEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 467789999999998643 332 23455 99999999999999999998765
No 244
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=25.54 E-value=77 Score=36.76 Aligned_cols=146 Identities=10% Similarity=0.166 Sum_probs=96.5
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC-------------ceEEEEecCHHHHHHHHHh----------
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-------------GFALVEYINIIDAIRAREY---------- 588 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~r-------------gfAFVeF~~i~DAv~A~~~---------- 588 (1121)
-+|.|-.-|+-.+++=..+...|.+||+||+|.++... -.-.+-|..-+.+.+=...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999866 5678888887777664432
Q ss_pred -hcCCceeEEEEecc--------cCCCC-------cc--ccceeccccceEEEccCCCcchhHHHHHhhhcccccCC---
Q 001220 589 -IRNHFSWRVKFMDV--------GLGTK-------GV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--- 647 (1121)
Q Consensus 589 -L~G~~~~RI~F~r~--------~~g~r-------g~--~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgp--- 647 (1121)
|+-..+ .+.|..- +--.. .. ++=+--|..|.|.|-.= ..+.+++++.+--.+-....
T Consensus 94 ~L~S~~L-~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESL-TLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred hcCCcce-eEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCce
Confidence 222211 3333321 00000 00 11122257888888876 44558888877655541111
Q ss_pred -----ceeecc------CCCccccccccCHHHHHHHHHHHhhh
Q 001220 648 -----YMVTDL------SCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 648 -----v~f~Dl------~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
+.++.. =.++++.+=|-++-=|..+|.+|+.+
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 111111 14688999999999999999999966
No 245
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=24.37 E-value=1.7e+02 Score=30.91 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=37.7
Q ss_pred HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 547 EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 547 e~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
..+|.+.|..||.+.=|+|.. +--+|.|++-+-|.+|+ .|+|..++
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEET
T ss_pred HHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEEC
Confidence 357889999999888777766 57799999999999996 58888776
No 246
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=23.12 E-value=1.1e+02 Score=36.56 Aligned_cols=16 Identities=6% Similarity=-0.163 Sum_probs=7.4
Q ss_pred ccccCCccceeEEeec
Q 001220 979 ALCKSGVHYCTIYAQR 994 (1121)
Q Consensus 979 ~l~kSganyCtIl~s~ 994 (1121)
..-.+.+||....+++
T Consensus 241 A~RLKdsQNt~A~LTT 256 (457)
T KOG0559|consen 241 AERLKDSQNTAAMLTT 256 (457)
T ss_pred HHHHHhhhhhhhhhhh
Confidence 3334455555444444
No 247
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=22.09 E-value=18 Score=42.90 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=55.8
Q ss_pred ecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhh
Q 001220 520 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYI 589 (1121)
Q Consensus 520 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~--~rgfAFVeF~~i~DAv~A~~~L 589 (1121)
|+-+.+|..|=-.-+.++|++|..++-..|+.+.|.+||.+---.++. ...|+-|+|..----+.|.+.+
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc
Confidence 555667888877789999999999999999999999999987544443 6667789998777777775543
No 248
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=21.64 E-value=45 Score=40.83 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=49.0
Q ss_pred hhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHHHh
Q 001220 147 TASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVFLG 216 (1121)
Q Consensus 147 ta~aci~gl~dic~~a~s~~~~s~v~~gics~v~~~vl~ff~~~f~gkdi~~~~~~~~~~~qd~~e~~~~ 216 (1121)
++.+|+.|||-||..+..+.|=.+++-|+-++++-|.++- -++.+|+-||.++|.+
T Consensus 291 ~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~k--------------L~~~lkvDDpl~~f~~ 346 (500)
T KOG0682|consen 291 LCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANK--------------LKERLKVDDPLDAFAV 346 (500)
T ss_pred hHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHH--------------HHHHhcCCcHHHHHHH
Confidence 5789999999999999999999999999999998887654 3678888899888854
No 249
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.51 E-value=3e+02 Score=28.97 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc--------CCchHHHHHHHHHHhcc
Q 001220 37 PPPLSQDEIQSRRRNKDEIRSVYECYRRLKACIAQKDA--------RRLPELEQAYLSLITAS 91 (1121)
Q Consensus 37 ~~p~~~ee~~~~~rn~~e~r~v~~~y~~~k~~~~~~~~--------~~~~~leq~y~~li~~s 91 (1121)
||--|+++|.+-+|.-+.|..+.|...-||..|..++- |.|-+|-|.-.+||.+=
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl 89 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSL 89 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 55688999999999999999999999999999999985 47889999999988764
No 250
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=21.02 E-value=95 Score=34.72 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=54.6
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-e---ccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
--.|-|-|+....+-|+|--=|.+.|.++++-| . .-..++.+||-|.--.||.-||+.|.+.-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ 79 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV 79 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee
Confidence 457889999999999999999999999998744 3 36789999999999999999999998854
No 251
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=20.76 E-value=33 Score=38.64 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=5.8
Q ss_pred cchhHHHHHhhhccc
Q 001220 629 QWAKDEILHESYKVV 643 (1121)
Q Consensus 629 ~~~keELf~E~~kag 643 (1121)
.|++.-|..-++++.
T Consensus 8 iWDDtaLIkaYdkav 22 (264)
T PF06003_consen 8 IWDDTALIKAYDKAV 22 (264)
T ss_dssp -----HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 355666666666544
No 252
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=20.58 E-value=33 Score=39.66 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhh
Q 001220 667 EEATTAMAHLRQH 679 (1121)
Q Consensus 667 edA~~A~~~l~~~ 679 (1121)
-|++.++-.+|.+
T Consensus 111 ~~~i~~i~~~ke~ 123 (312)
T PF01213_consen 111 SEAIQKIQEFKEK 123 (312)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444443
No 253
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.43 E-value=3.1e+02 Score=35.98 Aligned_cols=18 Identities=50% Similarity=0.822 Sum_probs=12.6
Q ss_pred HHHhccCCc--hHHHHHHhh
Q 001220 86 SLITASRGC--TSVQRIVAD 103 (1121)
Q Consensus 86 ~li~~s~gc--~svqri~a~ 103 (1121)
+|+..-+|| |++=||+|-
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 478888877 666676664
No 254
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=20.08 E-value=1.6e+02 Score=28.92 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=37.4
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCc--eeeccCCCccccccccCHHHHHHHHHHHhh
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv--~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
..|||-+.|..+....+-.-++. +.+.+ .+..+ ..+.+.|-|-+.|.|.+|.+-|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~q--LsdNCGGkVl~v-~~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQ--LSDNCGGKVLSV-SGGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHH--HHHTTT--EEE---TT-EEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCCHHHHHHHHHH--HhhccCCEEEEE-eCCEEEEEeCCHHHHHHHHHhhcc
Confidence 36899999988777766666654 33333 34444 358999999999999999888875
Done!