Query 001220
Match_columns 1121
No_of_seqs 306 out of 309
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxl_A Paraneoplastic encephal 99.8 6.3E-21 2.2E-25 180.2 14.1 142 532-682 1-156 (167)
2 3nmr_A Cugbp ELAV-like family 99.8 1.5E-20 5E-25 179.4 14.5 143 531-681 1-161 (175)
3 3md3_A Nuclear and cytoplasmic 99.8 1.2E-20 4E-25 178.2 13.0 142 534-682 1-155 (166)
4 1b7f_A Protein (SXL-lethal pro 99.8 1.7E-20 5.8E-25 178.3 13.7 141 532-681 2-156 (168)
5 4f02_A Polyadenylate-binding p 99.8 3.3E-20 1.1E-24 187.4 11.9 145 531-682 13-169 (213)
6 3tyt_A Heterogeneous nuclear r 99.8 1.1E-19 3.6E-24 185.4 15.3 151 532-682 3-191 (205)
7 2qfj_A FBP-interacting repress 99.8 8.2E-20 2.8E-24 180.7 11.1 155 528-682 23-193 (216)
8 1qm9_A Polypyrimidine tract-bi 99.8 2.8E-19 9.4E-24 176.3 14.8 149 533-682 3-184 (198)
9 2g4b_A Splicing factor U2AF 65 99.8 1.2E-19 4E-24 173.7 11.7 142 531-682 2-162 (172)
10 2adc_A Polypyrimidine tract-bi 99.8 2.7E-19 9.2E-24 182.6 15.1 151 531-682 32-215 (229)
11 2yh0_A Splicing factor U2AF 65 99.8 1.8E-19 6.1E-24 176.0 11.8 150 532-682 3-182 (198)
12 3pgw_A U1-A; protein-RNA compl 99.8 3.6E-19 1.2E-23 184.9 14.4 151 530-682 6-270 (282)
13 3sde_A Paraspeckle component 1 99.8 4.9E-19 1.7E-23 184.3 14.2 136 528-678 17-159 (261)
14 3smz_A Protein raver-1, ribonu 99.8 4.2E-19 1.4E-23 184.5 13.4 183 530-739 19-219 (284)
15 1fje_B Nucleolin RBD12, protei 99.8 6.2E-19 2.1E-23 169.9 13.1 143 531-682 11-162 (175)
16 1l3k_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 172.9 11.5 141 531-675 11-165 (196)
17 2cjk_A Nuclear polyadenylated 99.8 1.9E-19 6.6E-24 171.4 8.4 140 531-681 1-153 (167)
18 2ghp_A U4/U6 snRNA-associated 99.8 8.8E-19 3E-23 182.8 13.4 187 531-739 39-245 (292)
19 3smz_A Protein raver-1, ribonu 99.7 1.3E-17 4.5E-22 173.3 14.3 157 520-682 82-252 (284)
20 2ghp_A U4/U6 snRNA-associated 99.7 2E-17 6.8E-22 172.6 12.0 148 532-682 116-279 (292)
21 4f25_A Polyadenylate-binding p 99.6 3.6E-16 1.2E-20 145.2 8.9 100 533-633 5-112 (115)
22 2cpj_A Non-POU domain-containi 99.5 8.6E-15 3E-19 131.4 8.8 77 526-602 8-88 (99)
23 2hvz_A Splicing factor, argini 99.5 9.3E-15 3.2E-19 131.3 8.8 92 534-627 1-100 (101)
24 3r27_A HnRNP L, heterogeneous 99.5 1.1E-14 3.9E-19 135.9 9.5 77 526-602 14-96 (100)
25 1wex_A Hypothetical protein (r 99.5 1.6E-14 5.6E-19 134.0 9.8 78 526-603 8-91 (104)
26 2cq1_A PTB-like protein L; RRM 99.5 3.9E-14 1.3E-18 131.0 9.5 77 527-603 9-91 (101)
27 4fxv_A ELAV-like protein 1; RN 99.5 3.5E-14 1.2E-18 129.6 8.7 74 529-602 15-98 (99)
28 2cq2_A Hypothetical protein LO 99.5 2.5E-14 8.4E-19 136.4 7.9 64 531-594 23-88 (114)
29 1x4d_A Matrin 3; structural ge 99.5 2.2E-14 7.7E-19 133.5 7.4 71 532-602 14-91 (102)
30 2ytc_A PRE-mRNA-splicing facto 99.5 7.6E-14 2.6E-18 121.2 8.9 70 531-600 10-84 (85)
31 1why_A Hypothetical protein ri 99.5 1E-13 3.5E-18 124.0 9.3 73 530-602 14-92 (97)
32 1x5s_A Cold-inducible RNA-bind 99.5 1.8E-13 6E-18 123.0 10.8 79 526-604 5-93 (102)
33 2ad9_A Polypyrimidine tract-bi 99.5 8.5E-14 2.9E-18 133.3 9.1 74 530-603 28-107 (119)
34 1sjq_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 132.3 7.5 72 531-602 14-91 (105)
35 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.7E-13 5.7E-18 123.6 10.4 76 528-603 10-93 (103)
36 1x4f_A Matrin 3; structural ge 99.5 6.1E-14 2.1E-18 133.0 7.5 73 530-602 22-101 (112)
37 2la4_A Nuclear and cytoplasmic 99.5 7.7E-14 2.6E-18 125.4 7.5 71 532-602 26-100 (101)
38 2x1f_A MRNA 3'-END-processing 99.5 1.4E-13 4.7E-18 122.9 8.8 71 532-602 1-81 (96)
39 2dnz_A Probable RNA-binding pr 99.4 2.7E-13 9.1E-18 120.1 10.4 73 531-603 3-85 (95)
40 2wbr_A GW182, gawky, LD47780P; 99.4 8.2E-14 2.8E-18 128.4 7.2 68 533-600 7-78 (89)
41 3md1_A Nuclear and cytoplasmic 99.4 1.5E-13 5.2E-18 118.6 8.4 70 533-602 1-80 (83)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.4 1.6E-13 5.6E-18 118.9 8.6 71 531-601 5-85 (85)
43 2dnq_A RNA-binding protein 4B; 99.4 2.4E-13 8E-18 120.1 9.7 71 531-603 6-80 (90)
44 1x4g_A Nucleolysin TIAR; struc 99.4 1.8E-13 6.2E-18 125.0 9.2 73 531-603 23-99 (109)
45 3bs9_A Nucleolysin TIA-1 isofo 99.4 1.8E-13 6.2E-18 119.1 8.7 72 531-602 4-85 (87)
46 1x5t_A Splicing factor 3B subu 99.4 2.1E-13 7.2E-18 120.9 9.2 73 531-603 3-86 (96)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.4 1.5E-13 5.2E-18 123.4 8.3 76 528-603 7-92 (102)
48 2kvi_A Nuclear polyadenylated 99.4 2.4E-13 8.2E-18 121.9 9.1 75 527-603 4-83 (96)
49 2cpf_A RNA binding motif prote 99.4 2.4E-13 8.2E-18 121.3 8.9 73 531-603 3-88 (98)
50 3s8s_A Histone-lysine N-methyl 99.4 2E-13 6.9E-18 127.1 8.7 72 531-602 4-85 (110)
51 2cph_A RNA binding motif prote 99.4 3.2E-13 1.1E-17 121.9 9.6 74 530-603 12-97 (107)
52 2cqc_A Arginine/serine-rich sp 99.4 2.3E-13 7.9E-18 120.2 8.4 74 529-602 11-94 (95)
53 2dgt_A RNA-binding protein 30; 99.4 3.8E-13 1.3E-17 119.2 9.7 71 531-603 8-82 (92)
54 2ywk_A Putative RNA-binding pr 99.4 2.3E-13 7.8E-18 120.5 8.2 72 531-602 14-94 (95)
55 2dnp_A RNA-binding protein 14; 99.4 3.9E-13 1.3E-17 118.7 9.3 71 531-603 7-81 (90)
56 1whx_A Hypothetical protein ri 99.4 2.5E-13 8.4E-18 125.9 8.4 71 532-602 9-83 (111)
57 1x4a_A Splicing factor, argini 99.4 4.3E-13 1.5E-17 122.3 9.9 73 531-603 20-99 (109)
58 2cq3_A RNA-binding protein 9; 99.4 5.4E-13 1.9E-17 120.2 10.4 74 530-603 12-93 (103)
59 2xnq_A Nuclear polyadenylated 99.4 3.9E-13 1.3E-17 121.6 9.4 72 529-602 18-94 (97)
60 3lqv_A PRE-mRNA branch site pr 99.4 4.2E-13 1.4E-17 123.2 9.6 96 532-644 7-109 (115)
61 2fy1_A RNA-binding motif prote 99.4 4.2E-13 1.4E-17 125.2 9.7 73 531-603 5-86 (116)
62 2dnh_A Bruno-like 5, RNA bindi 99.4 3.7E-13 1.3E-17 121.4 9.0 73 531-603 13-97 (105)
63 4a8x_A RNA-binding protein wit 99.4 3.7E-13 1.3E-17 117.1 8.5 71 532-602 3-84 (88)
64 2d9p_A Polyadenylate-binding p 99.4 3.3E-13 1.1E-17 121.6 8.4 73 531-603 13-93 (103)
65 2dgp_A Bruno-like 4, RNA bindi 99.4 5.2E-13 1.8E-17 120.7 9.7 73 531-603 11-96 (106)
66 2e5h_A Zinc finger CCHC-type a 99.4 4.4E-13 1.5E-17 118.4 9.0 71 530-600 13-93 (94)
67 2dgx_A KIAA0430 protein; RRM d 99.4 3.3E-13 1.1E-17 121.2 8.2 73 530-602 6-89 (96)
68 1fjc_A Nucleolin RBD2, protein 99.4 3E-13 1E-17 120.2 7.7 84 520-603 3-91 (96)
69 1u6f_A Tcubp1, RNA-binding pro 99.4 3.9E-13 1.3E-17 127.2 9.0 74 531-604 40-123 (139)
70 2dgv_A HnRNP M, heterogeneous 99.4 4.3E-13 1.5E-17 118.1 8.3 73 531-603 6-86 (92)
71 2cqh_A IGF-II mRNA-binding pro 99.4 2.7E-13 9.3E-18 120.1 7.0 72 531-603 6-83 (93)
72 2div_A TRNA selenocysteine ass 99.4 5.8E-13 2E-17 119.0 9.2 72 531-602 7-93 (99)
73 2cpe_A RNA-binding protein EWS 99.4 7.3E-13 2.5E-17 121.2 10.0 82 522-603 4-103 (113)
74 1p27_B RNA-binding protein 8A; 99.4 6.1E-13 2.1E-17 120.2 9.2 73 530-602 20-102 (106)
75 1nu4_A U1A RNA binding domain; 99.4 4.5E-13 1.5E-17 119.0 8.1 73 530-602 5-88 (97)
76 2err_A Ataxin-2-binding protei 99.4 5.5E-13 1.9E-17 122.8 8.9 73 530-602 26-106 (109)
77 1whw_A Hypothetical protein ri 99.4 4.8E-13 1.6E-17 119.5 8.2 73 531-603 6-88 (99)
78 2la6_A RNA-binding protein FUS 99.4 6.5E-13 2.2E-17 119.2 9.0 70 531-600 11-98 (99)
79 2do0_A HnRNP M, heterogeneous 99.4 7E-13 2.4E-17 121.3 9.4 77 526-602 8-93 (114)
80 2dgo_A Cytotoxic granule-assoc 99.4 5.5E-13 1.9E-17 122.4 8.7 73 531-603 13-95 (115)
81 2jvo_A Nucleolar protein 3; nu 99.4 5.6E-13 1.9E-17 123.2 8.7 71 530-602 28-102 (108)
82 3ex7_B RNA-binding protein 8A; 99.4 7.7E-13 2.6E-17 123.2 9.5 77 527-603 16-102 (126)
83 1wf1_A RNA-binding protein RAL 99.4 8.1E-13 2.8E-17 120.9 9.4 71 530-602 24-99 (110)
84 2do4_A Squamous cell carcinoma 99.4 6.5E-13 2.2E-17 119.1 8.5 72 531-602 15-95 (100)
85 2lxi_A RNA-binding protein 10; 99.4 3.2E-13 1.1E-17 121.1 6.4 71 533-603 1-83 (91)
86 2a3j_A U1 small nuclear ribonu 99.4 7.2E-13 2.5E-17 127.3 9.2 73 530-602 26-109 (127)
87 2dis_A Unnamed protein product 99.4 5.8E-13 2E-17 120.9 7.9 73 531-603 6-92 (109)
88 2e5i_A Heterogeneous nuclear r 99.4 1.3E-12 4.3E-17 125.9 10.6 75 528-602 18-101 (124)
89 2dgs_A DAZ-associated protein 99.4 9.8E-13 3.3E-17 117.8 9.2 72 531-603 8-89 (99)
90 2e5j_A Methenyltetrahydrofolat 99.4 1.2E-12 3.9E-17 117.4 9.4 72 531-602 17-93 (97)
91 2cq0_A Eukaryotic translation 99.4 6.3E-13 2.1E-17 119.8 7.7 73 531-603 13-95 (103)
92 1x5o_A RNA binding motif, sing 99.4 9.9E-13 3.4E-17 120.5 9.2 72 531-602 23-111 (114)
93 2dgu_A Heterogeneous nuclear r 99.4 7.5E-13 2.6E-17 119.8 8.2 72 530-603 8-83 (103)
94 1x4e_A RNA binding motif, sing 99.4 2.6E-13 8.9E-18 118.1 5.0 65 531-595 3-73 (85)
95 1p1t_A Cleavage stimulation fa 99.4 5.8E-13 2E-17 119.7 7.3 72 531-602 6-87 (104)
96 1oo0_B CG8781-PA, drosophila Y 99.4 1.1E-12 3.7E-17 119.6 9.0 73 530-602 23-105 (110)
97 2cpz_A CUG triplet repeat RNA- 99.4 9.8E-13 3.4E-17 121.0 8.8 73 531-603 23-105 (115)
98 2hzc_A Splicing factor U2AF 65 99.4 8.2E-13 2.8E-17 114.9 7.7 70 531-601 4-86 (87)
99 2dnm_A SRP46 splicing factor; 99.4 8.1E-13 2.8E-17 119.1 7.9 72 531-602 11-92 (103)
100 1x4h_A RNA-binding protein 28; 99.4 1.1E-12 3.6E-17 119.3 8.7 73 530-602 12-100 (111)
101 2cpd_A Apobec-1 stimulating pr 99.4 1.9E-12 6.5E-17 116.2 10.1 75 527-603 9-89 (99)
102 1x5p_A Negative elongation fac 99.4 1E-12 3.5E-17 117.7 8.3 71 531-603 13-87 (97)
103 3tht_A Alkylated DNA repair pr 99.4 5.4E-13 1.8E-17 147.8 7.9 117 530-677 15-133 (345)
104 2khc_A Testis-specific RNP-typ 99.4 7E-13 2.4E-17 122.2 7.2 70 531-600 38-117 (118)
105 1x5u_A Splicing factor 3B subu 99.4 2.3E-12 8E-17 116.2 10.3 73 531-603 13-95 (105)
106 3ulh_A THO complex subunit 4; 99.4 1.4E-12 4.7E-17 118.1 8.7 71 530-600 26-105 (107)
107 3zzy_A Polypyrimidine tract-bi 99.4 1.4E-12 4.7E-17 127.0 9.1 69 534-602 29-105 (130)
108 2cpi_A CCR4-NOT transcription 99.3 8E-13 2.7E-17 121.8 6.7 72 532-603 14-101 (111)
109 2jrs_A RNA-binding protein 39; 99.3 1.2E-12 4.2E-17 120.7 8.0 72 531-602 24-105 (108)
110 2kt5_A RNA and export factor-b 99.3 2.5E-12 8.5E-17 120.0 10.1 74 529-602 31-113 (124)
111 2i2y_A Fusion protein consists 99.3 1.7E-12 5.9E-17 124.8 9.2 74 529-602 69-147 (150)
112 2krb_A Eukaryotic translation 99.3 1E-12 3.4E-17 114.2 6.9 62 533-594 1-72 (81)
113 2ek1_A RNA-binding protein 12; 99.3 6.9E-13 2.4E-17 117.4 5.9 72 531-602 13-94 (95)
114 2dhg_A TRNA selenocysteine ass 99.3 9.2E-13 3.2E-17 118.7 6.5 72 531-602 7-89 (104)
115 1x4c_A Splicing factor, argini 99.3 2.4E-12 8.2E-17 117.9 9.4 72 531-603 13-93 (108)
116 1sjr_A Polypyrimidine tract-bi 99.3 1.3E-12 4.4E-17 131.8 8.2 71 533-603 46-124 (164)
117 3ucg_A Polyadenylate-binding p 99.3 1.6E-12 5.6E-17 113.5 7.8 70 532-602 5-84 (89)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.7E-12 5.7E-17 122.0 8.4 66 530-595 60-131 (140)
119 2cqd_A RNA-binding region cont 99.3 3.1E-12 1.1E-16 117.8 9.6 72 531-603 15-96 (116)
120 2lkz_A RNA-binding protein 5; 99.3 1.7E-12 5.9E-17 118.7 7.8 70 533-602 9-94 (95)
121 2kxn_B Transformer-2 protein h 99.3 1.7E-12 5.7E-17 123.9 7.2 72 531-602 44-125 (129)
122 1h2v_Z 20 kDa nuclear CAP bind 99.3 3.8E-12 1.3E-16 123.1 9.8 77 527-603 33-119 (156)
123 1wi8_A EIF-4B, eukaryotic tran 99.3 2.8E-12 9.6E-17 116.0 8.3 71 531-603 13-94 (104)
124 1wg1_A KIAA1579 protein, homol 99.3 2.9E-12 1E-16 113.1 7.6 70 532-602 4-77 (88)
125 2jvr_A Nucleolar protein 3; RN 99.3 2.9E-12 1E-16 120.6 7.9 71 532-602 27-104 (111)
126 2cpx_A Hypothetical protein FL 99.3 3E-12 1E-16 117.2 7.7 73 531-603 23-105 (115)
127 2cqp_A RNA-binding protein 12; 99.3 2.9E-12 9.7E-17 114.3 7.2 71 531-601 13-93 (98)
128 3p5t_L Cleavage and polyadenyl 99.3 1.8E-12 6.2E-17 114.9 5.9 69 534-602 2-82 (90)
129 3ns6_A Eukaryotic translation 99.3 2.8E-12 9.7E-17 116.4 6.7 71 532-602 5-92 (100)
130 2bz2_A Negative elongation fac 99.3 6E-12 2E-16 119.0 9.0 71 531-603 37-111 (121)
131 2cq4_A RNA binding motif prote 99.3 3E-12 1E-16 117.6 6.6 71 531-602 23-103 (114)
132 2jwn_A Embryonic polyadenylate 99.3 3.3E-12 1.1E-16 118.6 7.0 71 531-602 34-114 (124)
133 2ki2_A SS-DNA binding protein 99.3 2.1E-12 7.2E-17 113.5 5.3 68 534-602 2-79 (90)
134 1fj7_A Nucleolin RBD1, protein 99.3 9E-12 3.1E-16 111.9 9.3 74 529-603 13-95 (101)
135 1s79_A Lupus LA protein; RRM, 99.3 5.4E-12 1.8E-16 116.4 8.0 68 532-600 10-86 (103)
136 2dng_A Eukaryotic translation 99.3 7.7E-12 2.6E-16 113.0 8.8 71 531-603 13-93 (103)
137 2nlw_A Eukaryotic translation 99.3 4.1E-12 1.4E-16 116.0 6.7 71 531-601 13-98 (105)
138 2kn4_A Immunoglobulin G-bindin 99.3 8.4E-12 2.9E-16 120.2 9.2 75 529-603 66-150 (158)
139 3egn_A RNA-binding protein 40; 99.3 4.2E-12 1.5E-16 121.1 7.1 72 531-602 43-129 (143)
140 2fc9_A NCL protein; structure 99.3 7.1E-12 2.4E-16 112.6 7.9 73 531-603 13-91 (101)
141 2m2b_A RNA-binding protein 10; 99.3 3.3E-12 1.1E-16 120.8 5.9 72 531-603 21-108 (131)
142 2rs2_A Musashi-1, RNA-binding 99.3 8.4E-12 2.9E-16 115.1 8.3 76 526-602 18-103 (109)
143 2j76_E EIF-4B, EIF4B, eukaryot 99.3 3E-12 1E-16 115.7 5.2 72 529-602 15-97 (100)
144 3s7r_A Heterogeneous nuclear r 99.3 9.8E-12 3.4E-16 108.6 8.3 62 531-593 9-76 (87)
145 3n9u_C Cleavage and polyadenyl 99.3 7.1E-12 2.4E-16 123.6 8.1 72 531-602 53-136 (156)
146 3d2w_A TAR DNA-binding protein 99.3 1E-11 3.4E-16 111.2 8.3 59 531-593 9-68 (89)
147 3nmr_A Cugbp ELAV-like family 99.3 1.1E-11 3.6E-16 118.3 8.9 70 532-601 94-175 (175)
148 2mss_A Protein (musashi1); RNA 99.2 7.3E-12 2.5E-16 106.6 6.8 60 535-595 1-66 (75)
149 2dh8_A DAZ-associated protein 99.2 5.1E-12 1.8E-16 114.2 6.0 73 529-602 12-94 (105)
150 1uaw_A Mouse-musashi-1; RNP-ty 99.2 7.4E-12 2.5E-16 106.6 6.6 60 534-594 1-66 (77)
151 2lea_A Serine/arginine-rich sp 99.2 7.6E-12 2.6E-16 120.0 7.5 73 531-603 45-127 (135)
152 1wf0_A TDP-43, TAR DNA-binding 99.2 8.7E-12 3E-16 109.6 7.2 55 531-585 3-58 (88)
153 3u1l_A PRE-mRNA-splicing facto 99.2 8.8E-12 3E-16 132.2 8.6 72 531-602 132-228 (240)
154 1x4b_A Heterogeneous nuclear r 99.2 1.2E-11 4.2E-16 113.8 8.5 72 531-603 25-106 (116)
155 3beg_B Splicing factor, argini 99.2 1.2E-11 4.1E-16 115.1 8.4 63 532-595 15-77 (115)
156 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1.3E-11 4.4E-16 121.1 8.5 72 531-602 70-151 (165)
157 2cqg_A TDP-43, TAR DNA-binding 99.2 1.5E-11 5.1E-16 110.8 8.2 72 530-602 12-92 (103)
158 2e5g_A U6 snRNA-specific termi 99.2 1E-11 3.6E-16 110.6 6.9 70 531-601 6-80 (94)
159 2cpy_A RNA-binding protein 12; 99.2 1.6E-11 5.6E-16 113.6 8.4 74 528-602 10-93 (114)
160 2fc8_A NCL protein; structure 99.2 2.2E-11 7.4E-16 109.3 8.7 73 531-603 13-92 (102)
161 3md3_A Nuclear and cytoplasmic 99.2 1.8E-11 6.3E-16 115.4 8.5 70 532-601 86-165 (166)
162 2e44_A Insulin-like growth fac 99.2 2.8E-11 9.5E-16 107.5 8.9 72 531-602 13-91 (96)
163 2dnl_A Cytoplasmic polyadenyla 99.2 1.2E-11 4.1E-16 114.5 6.4 62 531-593 6-79 (114)
164 1qm9_A Polypyrimidine tract-bi 99.2 3.3E-11 1.1E-15 118.8 9.8 76 528-603 115-197 (198)
165 2lcw_A RNA-binding protein FUS 98.8 1.5E-12 5.2E-17 120.1 0.0 73 531-603 5-95 (116)
166 2dgw_A Probable RNA-binding pr 99.2 4.1E-11 1.4E-15 105.7 8.9 70 531-602 8-86 (91)
167 1wez_A HnRNP H', FTP-3, hetero 99.2 4.9E-11 1.7E-15 109.3 9.7 71 530-602 12-91 (102)
168 1iqt_A AUF1, heterogeneous nuc 99.2 1.6E-11 5.6E-16 104.2 5.8 59 535-594 1-65 (75)
169 2qfj_A FBP-interacting repress 99.2 4.3E-11 1.5E-15 118.4 9.0 73 530-602 122-204 (216)
170 2adc_A Polypyrimidine tract-bi 99.2 4.8E-11 1.7E-15 121.8 9.6 76 528-603 146-228 (229)
171 3pgw_A U1-A; protein-RNA compl 99.2 4.6E-11 1.6E-15 124.1 9.6 75 527-601 201-281 (282)
172 1fxl_A Paraneoplastic encephal 99.2 5.1E-11 1.8E-15 112.5 8.9 64 532-595 87-156 (167)
173 1wel_A RNA-binding protein 12; 99.2 2.2E-11 7.5E-16 114.1 6.3 69 531-600 23-101 (124)
174 2f3j_A RNA and export factor b 99.2 7.1E-11 2.4E-15 118.5 10.0 73 530-602 85-166 (177)
175 2xs2_A Deleted in azoospermia- 99.2 1.1E-11 3.8E-16 111.5 3.6 68 532-600 8-83 (102)
176 2g4b_A Splicing factor U2AF 65 99.2 4.7E-11 1.6E-15 114.1 7.8 68 533-600 94-171 (172)
177 2yh0_A Splicing factor U2AF 65 99.1 6E-11 2E-15 115.8 8.0 72 531-602 112-193 (198)
178 4f02_A Polyadenylate-binding p 99.1 7.4E-11 2.5E-15 119.2 8.5 72 531-602 101-180 (213)
179 1b7f_A Protein (SXL-lethal pro 99.1 1E-10 3.6E-15 111.0 9.0 63 532-594 88-156 (168)
180 3q2s_C Cleavage and polyadenyl 99.1 4.9E-11 1.7E-15 124.1 7.3 71 532-602 67-149 (229)
181 2db1_A Heterogeneous nuclear r 99.1 7E-11 2.4E-15 110.6 7.2 64 531-595 15-86 (118)
182 1wg5_A Heterogeneous nuclear r 99.1 1.7E-10 5.7E-15 105.2 8.8 64 531-595 13-82 (104)
183 2lmi_A GRSF-1, G-rich sequence 99.1 7.6E-11 2.6E-15 108.0 5.8 64 531-595 9-80 (107)
184 3tyt_A Heterogeneous nuclear r 99.1 1.6E-10 5.4E-15 118.0 8.2 67 528-594 118-190 (205)
185 2pe8_A Splicing factor 45; RRM 99.1 2.7E-10 9.2E-15 105.9 8.9 72 531-602 6-93 (105)
186 2hgl_A HNRPF protein, heteroge 99.1 1.5E-10 5E-15 112.6 7.3 64 531-595 42-113 (136)
187 2cjk_A Nuclear polyadenylated 99.1 1.4E-10 4.8E-15 110.3 7.0 71 531-602 85-165 (167)
188 3pgw_S U1-70K; protein-RNA com 99.1 1.9E-10 6.4E-15 130.4 8.7 72 531-602 100-181 (437)
189 2diu_A KIAA0430 protein; struc 99.1 2.2E-10 7.4E-15 107.1 7.4 69 530-602 5-83 (96)
190 1l3k_A Heterogeneous nuclear r 99.0 3.1E-10 1E-14 110.7 8.3 72 531-603 102-183 (196)
191 2dit_A HIV TAT specific factor 99.0 5.2E-10 1.8E-14 103.4 9.1 72 531-602 13-101 (112)
192 1fje_B Nucleolin RBD12, protei 99.0 1.7E-10 5.9E-15 111.0 6.1 71 532-602 98-173 (175)
193 3sde_A Paraspeckle component 1 99.0 3.9E-10 1.3E-14 117.5 8.3 83 520-602 83-178 (261)
194 2hgn_A Heterogeneous nuclear r 99.0 2.4E-10 8.3E-15 111.5 5.3 70 531-602 44-122 (139)
195 2dnn_A RNA-binding protein 12; 99.0 7.1E-10 2.4E-14 103.8 7.6 63 531-595 14-81 (109)
196 2kn4_A Immunoglobulin G-bindin 99.0 9.6E-10 3.3E-14 105.8 8.4 116 567-682 11-138 (158)
197 2dha_A FLJ20171 protein; RRM d 98.9 6E-10 2E-14 106.6 6.0 62 532-594 22-92 (123)
198 2voo_A Lupus LA protein; RNA-b 98.9 1.8E-09 6.3E-14 109.5 6.8 60 532-591 108-172 (193)
199 2hgm_A HNRPF protein, heteroge 98.8 2.9E-09 9.9E-14 102.7 6.9 62 531-594 40-108 (126)
200 3v4m_A Splicing factor U2AF 65 98.8 4.2E-09 1.4E-13 97.8 7.7 72 531-602 3-96 (105)
201 2i2y_A Fusion protein consists 98.8 2E-09 6.7E-14 103.5 5.0 115 567-682 11-136 (150)
202 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.1E-08 3.9E-13 94.8 9.2 61 543-603 27-90 (100)
203 3ue2_A Poly(U)-binding-splicin 98.8 8.7E-09 3E-13 98.1 7.9 72 531-602 18-108 (118)
204 1jmt_A Splicing factor U2AF 35 98.7 3.8E-09 1.3E-13 97.7 3.7 58 538-595 20-94 (104)
205 3s6e_A RNA-binding protein 39; 98.7 3.4E-08 1.2E-12 93.7 9.1 71 532-602 6-92 (114)
206 2j8a_A Histone-lysine N-methyl 98.7 1.3E-08 4.5E-13 100.2 6.4 69 534-602 3-95 (136)
207 1owx_A Lupus LA protein, SS-B, 98.5 3E-07 1E-11 88.9 8.3 62 529-590 14-77 (121)
208 2lea_A Serine/arginine-rich sp 98.4 1.9E-07 6.5E-12 89.5 4.3 103 571-682 6-115 (135)
209 1rk8_A CG8781-PA, CG8781-PA pr 98.2 8.2E-07 2.8E-11 87.0 5.0 109 574-682 11-140 (165)
210 3pgw_S U1-70K; protein-RNA com 98.2 3.1E-07 1E-11 104.3 1.0 129 549-682 8-170 (437)
211 1why_A Hypothetical protein ri 98.1 3.1E-06 1.1E-10 75.5 6.2 66 615-682 14-79 (97)
212 3mdf_A Peptidyl-prolyl CIS-tra 98.1 2.4E-06 8.1E-11 73.8 4.7 68 615-682 4-75 (85)
213 2e5h_A Zinc finger CCHC-type a 98.1 4.2E-06 1.4E-10 73.7 6.0 73 610-682 8-84 (94)
214 3dxb_A Thioredoxin N-terminall 98.0 5.2E-06 1.8E-10 84.4 6.8 58 545-602 141-212 (222)
215 2dnq_A RNA-binding protein 4B; 98.0 5E-06 1.7E-10 73.2 5.8 64 615-682 5-68 (90)
216 1wex_A Hypothetical protein (r 98.0 6.4E-06 2.2E-10 76.4 6.3 63 616-680 13-75 (104)
217 2x1f_A MRNA 3'-END-processing 98.0 5.2E-06 1.8E-10 73.9 5.4 66 617-682 1-70 (96)
218 2cpj_A Non-POU domain-containi 98.0 7.5E-06 2.6E-10 73.3 6.3 65 616-682 13-77 (99)
219 1x4e_A RNA binding motif, sing 98.0 1.1E-05 3.7E-10 70.0 7.1 67 616-682 3-73 (85)
220 1x5t_A Splicing factor 3B subu 98.0 6.4E-06 2.2E-10 72.8 5.5 67 616-682 3-74 (96)
221 1x4a_A Splicing factor, argini 98.0 1.1E-05 3.6E-10 73.5 7.0 68 615-682 19-87 (109)
222 2la4_A Nuclear and cytoplasmic 98.0 7.8E-06 2.7E-10 73.2 6.0 64 617-682 26-89 (101)
223 2cqb_A Peptidyl-prolyl CIS-tra 98.0 7.2E-06 2.5E-10 73.4 5.8 68 615-682 9-80 (102)
224 2e5j_A Methenyltetrahydrofolat 98.0 9.2E-06 3.2E-10 72.6 6.4 67 615-682 16-82 (97)
225 1whw_A Hypothetical protein ri 98.0 6.6E-06 2.3E-10 73.3 5.4 68 615-682 5-76 (99)
226 2dgu_A Heterogeneous nuclear r 98.0 6E-06 2.1E-10 74.5 5.1 64 615-682 8-71 (103)
227 3r27_A HnRNP L, heterogeneous 98.0 6.8E-06 2.3E-10 76.9 5.5 63 616-680 19-81 (100)
228 1x4d_A Matrin 3; structural ge 97.9 7.3E-06 2.5E-10 76.3 5.4 63 616-680 13-76 (102)
229 2jvo_A Nucleolar protein 3; nu 97.9 8.6E-06 3E-10 75.1 5.7 64 615-682 28-91 (108)
230 2cpx_A Hypothetical protein FL 97.9 7.3E-06 2.5E-10 74.9 5.2 67 616-682 23-93 (115)
231 3bs9_A Nucleolysin TIA-1 isofo 97.9 6.1E-06 2.1E-10 71.5 4.4 67 616-682 4-74 (87)
232 3lqv_A PRE-mRNA branch site pr 97.9 9E-06 3.1E-10 74.4 5.7 67 616-682 6-73 (115)
233 2kvi_A Nuclear polyadenylated 97.9 1E-05 3.4E-10 72.4 5.8 63 616-682 8-71 (96)
234 2dnz_A Probable RNA-binding pr 97.9 1.2E-05 4.1E-10 70.9 6.1 67 616-682 3-73 (95)
235 2cq3_A RNA-binding protein 9; 97.9 1.6E-05 5.5E-10 71.4 7.0 68 615-682 12-81 (103)
236 2cqc_A Arginine/serine-rich sp 97.9 9.8E-06 3.4E-10 71.3 5.4 68 615-682 12-83 (95)
237 2dgt_A RNA-binding protein 30; 97.9 1.1E-05 3.7E-10 71.3 5.5 64 615-682 7-70 (92)
238 2do0_A HnRNP M, heterogeneous 97.9 1.1E-05 3.8E-10 73.6 5.6 67 616-682 13-82 (114)
239 2cqh_A IGF-II mRNA-binding pro 97.9 1.1E-05 3.9E-10 71.2 5.5 64 616-682 6-71 (93)
240 2div_A TRNA selenocysteine ass 97.9 7.4E-06 2.5E-10 73.0 4.4 68 615-682 6-78 (99)
241 4a8x_A RNA-binding protein wit 97.9 9E-06 3.1E-10 70.4 4.7 66 617-682 3-73 (88)
242 2cq1_A PTB-like protein L; RRM 97.9 9.7E-06 3.3E-10 75.0 5.2 62 615-678 12-73 (101)
243 2fc9_A NCL protein; structure 97.9 1.2E-05 4.1E-10 72.1 5.6 68 615-682 12-79 (101)
244 2dgv_A HnRNP M, heterogeneous 97.9 1E-05 3.5E-10 70.9 5.1 68 615-682 5-74 (92)
245 2xnq_A Nuclear polyadenylated 97.9 1.2E-05 3.9E-10 72.7 5.4 63 616-682 20-83 (97)
246 2d9p_A Polyadenylate-binding p 97.9 8.6E-06 3E-10 73.2 4.5 67 616-682 13-81 (103)
247 2hvz_A Splicing factor, argini 97.9 2.1E-05 7.3E-10 70.4 6.9 63 619-682 1-63 (101)
248 2cpe_A RNA-binding protein EWS 97.9 2.2E-05 7.5E-10 71.7 7.1 68 615-682 12-91 (113)
249 2dnp_A RNA-binding protein 14; 97.9 9.8E-06 3.4E-10 71.3 4.6 63 616-682 7-69 (90)
250 2cqi_A Nucleolysin TIAR; RNA r 97.9 1.8E-05 6.1E-10 71.1 6.4 67 616-682 13-81 (103)
251 2cq2_A Hypothetical protein LO 97.9 6.9E-06 2.3E-10 78.5 3.7 64 616-681 23-88 (114)
252 1x5s_A Cold-inducible RNA-bind 97.9 1.9E-05 6.5E-10 70.7 6.3 68 615-682 9-80 (102)
253 1x4f_A Matrin 3; structural ge 97.9 1.1E-05 3.9E-10 76.5 5.1 63 616-680 23-86 (112)
254 2ek1_A RNA-binding protein 12; 97.8 1.4E-05 4.7E-10 70.5 5.2 68 615-682 12-83 (95)
255 2dgp_A Bruno-like 4, RNA bindi 97.8 1.6E-05 5.3E-10 71.7 5.6 67 615-681 10-80 (106)
256 2ad9_A Polypyrimidine tract-bi 97.8 1.2E-05 4.3E-10 77.0 5.2 62 616-679 29-90 (119)
257 4fxv_A ELAV-like protein 1; RN 97.8 9.9E-06 3.4E-10 73.8 4.3 65 618-682 19-87 (99)
258 2cq0_A Eukaryotic translation 97.8 1.2E-05 4E-10 72.3 4.7 67 616-682 13-83 (103)
259 3ex7_B RNA-binding protein 8A; 97.8 1.5E-05 5.2E-10 74.0 5.5 67 616-682 20-90 (126)
260 3md1_A Nuclear and cytoplasmic 97.8 1.4E-05 4.9E-10 68.6 4.9 65 618-682 1-69 (83)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 1.6E-05 5.3E-10 74.6 5.6 68 615-682 60-131 (140)
262 1p27_B RNA-binding protein 8A; 97.8 1.6E-05 5.6E-10 71.6 5.5 66 617-682 22-91 (106)
263 1whx_A Hypothetical protein ri 97.8 1.5E-05 5.2E-10 73.7 5.4 64 617-682 9-72 (111)
264 2cpd_A Apobec-1 stimulating pr 97.8 1.3E-05 4.5E-10 71.7 4.8 63 616-682 13-77 (99)
265 2krb_A Eukaryotic translation 97.8 9.3E-06 3.2E-10 70.3 3.7 65 618-682 1-73 (81)
266 1nu4_A U1A RNA binding domain; 97.8 8.5E-06 2.9E-10 72.1 3.5 67 616-682 6-77 (97)
267 1p1t_A Cleavage stimulation fa 97.8 8.9E-06 3E-10 72.9 3.6 67 616-682 6-76 (104)
268 2do4_A Squamous cell carcinoma 97.8 1.6E-05 5.6E-10 71.0 5.3 67 616-682 15-84 (100)
269 2dnm_A SRP46 splicing factor; 97.8 1.1E-05 3.8E-10 72.4 4.2 67 616-682 11-81 (103)
270 2dgs_A DAZ-associated protein 97.8 1.8E-05 6.1E-10 70.7 5.5 67 615-682 7-77 (99)
271 1oo0_B CG8781-PA, drosophila Y 97.8 1.7E-05 5.8E-10 72.1 5.4 67 616-682 24-94 (110)
272 2cpf_A RNA binding motif prote 97.8 8.2E-06 2.8E-10 72.6 3.3 67 616-682 3-76 (98)
273 4f25_A Polyadenylate-binding p 97.8 1.2E-05 4E-10 74.6 4.4 65 618-682 5-71 (115)
274 2dgo_A Cytotoxic granule-assoc 97.8 1.2E-05 4.2E-10 73.6 4.5 67 616-682 13-83 (115)
275 2cpi_A CCR4-NOT transcription 97.8 1.3E-05 4.5E-10 73.7 4.7 70 613-682 10-89 (111)
276 1x5u_A Splicing factor 3B subu 97.8 2.1E-05 7.1E-10 70.8 5.8 67 616-682 13-83 (105)
277 2dnh_A Bruno-like 5, RNA bindi 97.8 1.5E-05 5.2E-10 71.7 4.9 66 616-681 13-81 (105)
278 2la6_A RNA-binding protein FUS 97.8 2.1E-05 7.2E-10 70.3 5.8 67 616-682 11-89 (99)
279 2cpz_A CUG triplet repeat RNA- 97.8 1.6E-05 5.5E-10 73.0 5.1 66 617-682 24-93 (115)
280 1wg1_A KIAA1579 protein, homol 97.8 2.1E-05 7.2E-10 69.2 5.6 63 617-682 4-66 (88)
281 2cph_A RNA binding motif prote 97.8 1.7E-05 6E-10 71.3 5.2 67 616-682 13-85 (107)
282 2hgl_A HNRPF protein, heteroge 97.8 1.3E-05 4.6E-10 77.9 4.7 107 569-682 1-113 (136)
283 1wf1_A RNA-binding protein RAL 97.8 1.6E-05 5.3E-10 72.7 4.9 62 617-682 26-88 (110)
284 2lkz_A RNA-binding protein 5; 97.8 2.2E-05 7.5E-10 71.7 5.7 70 611-680 2-77 (95)
285 2ywk_A Putative RNA-binding pr 97.8 1.9E-05 6.3E-10 69.7 5.0 68 615-682 13-83 (95)
286 2hzc_A Splicing factor U2AF 65 97.8 1.6E-05 5.3E-10 69.0 4.4 67 615-682 3-78 (87)
287 2lxi_A RNA-binding protein 10; 97.8 1.8E-05 6E-10 70.8 4.6 60 618-677 1-65 (91)
288 2dgx_A KIAA0430 protein; RRM d 97.8 2.2E-05 7.6E-10 70.3 5.2 67 616-682 7-78 (96)
289 3ulh_A THO complex subunit 4; 97.8 1.9E-05 6.4E-10 71.3 4.8 68 615-682 26-96 (107)
290 2ytc_A PRE-mRNA-splicing facto 97.8 1.4E-05 4.9E-10 69.1 3.8 65 616-682 10-75 (85)
291 1x4c_A Splicing factor, argini 97.8 2.5E-05 8.4E-10 71.4 5.6 63 616-681 13-75 (108)
292 2err_A Ataxin-2-binding protei 97.8 3.3E-05 1.1E-09 71.0 6.2 68 615-682 26-95 (109)
293 1x4g_A Nucleolysin TIAR; struc 97.8 2.1E-05 7.1E-10 71.7 4.9 64 617-682 24-87 (109)
294 1fjc_A Nucleolin RBD2, protein 97.8 1.7E-05 5.9E-10 70.2 4.2 67 615-682 13-79 (96)
295 1x4h_A RNA-binding protein 28; 97.7 2E-05 7E-10 71.3 4.8 62 616-677 13-78 (111)
296 1sjq_A Polypyrimidine tract-bi 97.7 2.1E-05 7.2E-10 74.1 5.0 61 616-678 14-74 (105)
297 3s8s_A Histone-lysine N-methyl 97.7 1.9E-05 6.5E-10 73.5 4.6 67 616-682 4-74 (110)
298 2dis_A Unnamed protein product 97.7 1.7E-05 5.8E-10 71.8 3.9 62 616-677 6-73 (109)
299 2dnl_A Cytoplasmic polyadenyla 97.7 2.7E-05 9.3E-10 71.9 5.3 61 616-676 6-72 (114)
300 2dnr_A Synaptojanin-1; RRM dom 97.7 6.1E-05 2.1E-09 70.0 7.6 52 548-602 30-85 (91)
301 2khc_A Testis-specific RNP-typ 97.7 1.7E-05 5.7E-10 73.0 3.6 66 617-682 39-108 (118)
302 2kt5_A RNA and export factor-b 97.7 4.8E-05 1.6E-09 70.8 6.6 68 615-682 32-102 (124)
303 2cqp_A RNA-binding protein 12; 97.7 5.3E-05 1.8E-09 67.3 6.5 68 615-682 12-83 (98)
304 1fj7_A Nucleolin RBD1, protein 97.7 2.3E-05 8E-10 70.1 4.2 66 616-682 15-83 (101)
305 2fy1_A RNA-binding motif prote 97.7 3.7E-05 1.3E-09 71.6 5.6 66 617-682 6-74 (116)
306 2e44_A Insulin-like growth fac 97.7 3.9E-05 1.3E-09 67.9 5.2 66 617-682 14-80 (96)
307 2jrs_A RNA-binding protein 39; 97.7 2.8E-05 9.7E-10 71.6 4.4 67 616-682 24-94 (108)
308 2kxn_B Transformer-2 protein h 97.7 3.2E-05 1.1E-09 73.7 5.0 67 616-682 44-114 (129)
309 2dhg_A TRNA selenocysteine ass 97.7 2.6E-05 8.9E-10 70.0 4.1 67 616-682 7-78 (104)
310 3ns6_A Eukaryotic translation 97.7 3.5E-05 1.2E-09 69.8 4.8 67 616-682 4-80 (100)
311 1u6f_A Tcubp1, RNA-binding pro 97.7 2.5E-05 8.7E-10 73.7 4.1 67 616-682 40-110 (139)
312 2jvr_A Nucleolar protein 3; RN 97.7 3.6E-05 1.2E-09 72.4 5.0 67 616-682 26-93 (111)
313 3beg_B Splicing factor, argini 97.7 3.3E-05 1.1E-09 71.8 4.7 63 617-682 15-77 (115)
314 3p5t_L Cleavage and polyadenyl 97.6 3.9E-05 1.3E-09 67.8 4.4 64 619-682 2-71 (90)
315 2cqd_A RNA-binding region cont 97.6 3.7E-05 1.3E-09 70.6 4.3 68 615-682 14-85 (116)
316 2e5g_A U6 snRNA-specific termi 97.6 4.5E-05 1.5E-09 67.7 4.7 65 616-682 6-70 (94)
317 3ucg_A Polyadenylate-binding p 97.6 3.4E-05 1.2E-09 67.1 3.8 65 617-682 5-73 (89)
318 1wi8_A EIF-4B, eukaryotic tran 97.6 4.5E-05 1.5E-09 68.8 4.7 66 615-682 12-82 (104)
319 2fc8_A NCL protein; structure 97.6 2.7E-05 9.3E-10 69.6 3.2 65 615-682 12-80 (102)
320 2nlw_A Eukaryotic translation 97.6 3.3E-05 1.1E-09 70.4 3.8 67 616-682 13-87 (105)
321 1x5o_A RNA binding motif, sing 97.6 6.1E-05 2.1E-09 68.8 5.5 67 616-682 23-92 (114)
322 2cq4_A RNA binding motif prote 97.6 3.8E-05 1.3E-09 70.3 4.2 66 616-682 23-92 (114)
323 2j76_E EIF-4B, EIF4B, eukaryot 97.6 4E-05 1.4E-09 69.1 3.9 65 616-682 17-86 (100)
324 2mss_A Protein (musashi1); RNA 97.5 5.1E-05 1.7E-09 64.3 3.9 62 620-682 1-66 (75)
325 3egn_A RNA-binding protein 40; 97.5 5E-05 1.7E-09 72.4 4.3 67 616-682 43-118 (143)
326 2a3j_A U1 small nuclear ribonu 97.5 6.4E-05 2.2E-09 72.2 4.9 67 616-682 27-98 (127)
327 2db1_A Heterogeneous nuclear r 97.5 7E-05 2.4E-09 70.0 5.1 70 612-682 11-86 (118)
328 1h2v_Z 20 kDa nuclear CAP bind 97.5 5.6E-05 1.9E-09 73.0 4.5 67 616-682 37-107 (156)
329 1uaw_A Mouse-musashi-1; RNP-ty 97.5 6.8E-05 2.3E-09 63.5 4.4 59 619-677 1-63 (77)
330 1s79_A Lupus LA protein; RRM, 97.5 7.7E-05 2.6E-09 68.8 4.9 65 616-681 9-76 (103)
331 3tht_A Alkylated DNA repair pr 97.5 4.8E-05 1.6E-09 84.7 4.0 65 615-681 15-81 (345)
332 2hgn_A Heterogeneous nuclear r 97.5 3.5E-05 1.2E-09 75.2 2.4 106 569-682 1-111 (139)
333 2m2b_A RNA-binding protein 10; 97.5 0.00027 9.2E-09 66.8 8.0 63 616-679 21-89 (131)
334 3n9u_C Cleavage and polyadenyl 97.4 7E-05 2.4E-09 73.8 4.0 66 617-682 54-125 (156)
335 2jwn_A Embryonic polyadenylate 97.4 4.9E-05 1.7E-09 70.5 2.6 65 617-682 35-103 (124)
336 2dh8_A DAZ-associated protein 97.4 6.7E-05 2.3E-09 67.6 3.3 68 614-682 12-83 (105)
337 2cqg_A TDP-43, TAR DNA-binding 97.4 0.0001 3.5E-09 66.2 4.5 61 615-675 12-76 (103)
338 2rs2_A Musashi-1, RNA-binding 97.4 7.4E-05 2.5E-09 68.8 3.6 62 616-677 23-88 (109)
339 2lmi_A GRSF-1, G-rich sequence 97.4 0.00015 5.2E-09 66.2 5.6 67 615-682 8-80 (107)
340 2wbr_A GW182, gawky, LD47780P; 97.4 0.00013 4.3E-09 67.6 5.0 64 617-682 6-69 (89)
341 2f3j_A RNA and export factor b 97.4 0.00015 5.1E-09 72.8 6.0 68 615-682 85-155 (177)
342 1ufw_A Synaptojanin 2; RNP dom 97.4 0.00023 8E-09 66.7 6.7 62 531-595 13-83 (95)
343 1x5p_A Negative elongation fac 97.4 0.00012 4E-09 65.4 4.6 63 616-682 13-75 (97)
344 2dgw_A Probable RNA-binding pr 97.4 0.00011 3.6E-09 64.7 4.1 65 616-682 8-75 (91)
345 2dng_A Eukaryotic translation 97.4 9.6E-05 3.3E-09 66.5 3.9 66 615-682 12-81 (103)
346 1sjr_A Polypyrimidine tract-bi 97.4 0.00012 4E-09 74.2 4.8 65 617-681 45-109 (164)
347 3zzy_A Polypyrimidine tract-bi 97.4 0.00013 4.5E-09 71.2 5.0 70 611-681 19-91 (130)
348 3u1l_A PRE-mRNA-splicing facto 97.4 0.00011 3.9E-09 78.1 4.9 64 616-681 132-204 (240)
349 3s7r_A Heterogeneous nuclear r 97.4 7.9E-05 2.7E-09 64.8 2.9 61 616-676 9-73 (87)
350 2ki2_A SS-DNA binding protein 97.3 6.5E-05 2.2E-09 65.8 2.2 63 619-682 2-68 (90)
351 1wel_A RNA-binding protein 12; 97.3 9.6E-05 3.3E-09 69.1 3.4 66 616-682 23-92 (124)
352 2cpy_A RNA-binding protein 12; 97.3 0.00023 7.9E-09 65.7 5.6 66 616-682 13-82 (114)
353 1x4b_A Heterogeneous nuclear r 97.3 0.00016 5.3E-09 66.5 4.3 65 617-682 26-94 (116)
354 2lcw_A RNA-binding protein FUS 96.4 3.8E-05 1.3E-09 70.7 0.0 66 617-682 6-83 (116)
355 2e5i_A Heterogeneous nuclear r 97.3 0.00024 8.1E-09 68.5 5.5 61 619-681 26-87 (124)
356 1wg5_A Heterogeneous nuclear r 97.3 0.00025 8.5E-09 64.5 5.0 66 616-682 13-82 (104)
357 2bz2_A Negative elongation fac 97.2 0.00038 1.3E-08 65.7 6.2 63 616-682 37-99 (121)
358 2xs2_A Deleted in azoospermia- 97.2 5.5E-05 1.9E-09 67.8 0.0 67 616-682 7-79 (102)
359 1wf0_A TDP-43, TAR DNA-binding 97.1 0.00038 1.3E-08 60.9 4.6 55 617-672 4-58 (88)
360 1iqt_A AUF1, heterogeneous nuc 97.1 0.00022 7.4E-09 60.2 2.9 56 620-675 1-60 (75)
361 2dit_A HIV TAT specific factor 97.1 0.00096 3.3E-08 61.5 7.0 67 616-682 13-90 (112)
362 3d2w_A TAR DNA-binding protein 97.0 0.0005 1.7E-08 61.3 4.6 58 612-670 5-62 (89)
363 3q2s_C Cleavage and polyadenyl 97.0 0.00019 6.6E-09 74.7 2.0 66 617-682 67-138 (229)
364 2z73_A Rhodopsin; visual pigme 96.9 0.00014 4.6E-09 79.4 0.0 8 347-354 132-139 (448)
365 1wez_A HnRNP H', FTP-3, hetero 96.9 0.00051 1.7E-08 62.8 3.7 66 615-682 12-80 (102)
366 2diu_A KIAA0430 protein; struc 96.8 0.00091 3.1E-08 62.8 4.9 63 617-682 7-72 (96)
367 2hgm_A HNRPF protein, heteroge 96.8 0.00051 1.7E-08 66.3 3.3 60 617-677 41-105 (126)
368 2dnn_A RNA-binding protein 12; 96.8 0.001 3.5E-08 62.2 5.0 64 617-682 15-81 (109)
369 2pe8_A Splicing factor 45; RRM 96.8 0.0014 4.9E-08 60.8 5.7 67 616-682 6-82 (105)
370 2dha_A FLJ20171 protein; RRM d 96.5 0.0015 5.1E-08 62.5 4.0 65 617-682 22-93 (123)
371 2voo_A Lupus LA protein; RNA-b 96.5 0.001 3.5E-08 67.5 3.0 66 617-682 108-176 (193)
372 1wey_A Calcipressin 1; structu 96.2 0.0081 2.8E-07 57.2 6.8 70 533-602 5-83 (104)
373 3s6e_A RNA-binding protein 39; 95.9 0.011 3.6E-07 56.1 6.2 70 613-682 2-81 (114)
374 1uw4_A UPF3X; nonsense mediate 95.6 0.032 1.1E-06 51.8 8.0 60 534-593 2-69 (91)
375 3v4m_A Splicing factor U2AF 65 95.3 0.018 6.1E-07 53.3 5.4 67 616-682 3-85 (105)
376 3ue2_A Poly(U)-binding-splicin 95.3 0.015 5E-07 55.4 4.6 66 617-682 19-97 (118)
377 2l9w_A U4/U6 snRNA-associated- 94.1 0.11 3.6E-06 50.4 7.4 61 533-593 21-86 (117)
378 1jmt_A Splicing factor U2AF 35 93.8 0.034 1.2E-06 51.3 3.3 50 633-682 41-94 (104)
379 1owx_A Lupus LA protein, SS-B, 93.7 0.065 2.2E-06 51.9 5.2 62 613-677 13-77 (121)
380 3pq1_A Poly(A) RNA polymerase; 93.4 0.031 1E-06 64.8 2.7 55 530-585 50-105 (464)
381 2d9o_A DNAJ (HSP40) homolog, s 91.5 0.098 3.4E-06 48.4 3.0 51 628-679 27-77 (100)
382 3u0r_A Apoptosis inhibitor 5; 91.2 0.48 1.6E-05 55.5 8.9 146 54-268 6-151 (507)
383 1wwh_A Nucleoporin 35, nucleop 90.7 0.56 1.9E-05 45.6 7.5 75 518-594 9-83 (119)
384 2j8a_A Histone-lysine N-methyl 89.4 0.14 4.7E-06 50.9 2.2 64 619-682 3-84 (136)
385 2dhx_A Poly (ADP-ribose) polym 88.9 1.1 3.8E-05 42.8 7.8 63 531-595 6-77 (104)
386 2l08_A Regulator of nonsense t 88.9 0.43 1.5E-05 45.0 5.0 61 533-593 9-77 (97)
387 3dxb_A Thioredoxin N-terminall 87.1 0.31 1.1E-05 49.4 3.1 53 630-682 141-201 (222)
388 3ctr_A Poly(A)-specific ribonu 86.5 0.55 1.9E-05 44.7 4.1 55 535-593 8-63 (101)
389 1whv_A Poly(A)-specific ribonu 85.6 2.1 7.2E-05 40.7 7.5 62 534-598 17-78 (100)
390 3h0g_A DNA-directed RNA polyme 84.5 0.19 6.5E-06 66.2 0.0 8 515-522 868-875 (1752)
391 3h0g_A DNA-directed RNA polyme 82.1 0.27 9.2E-06 64.8 0.0 29 132-163 611-643 (1752)
392 3obv_E Protein diaphanous homo 81.9 0.47 1.6E-05 54.7 1.9 111 975-1096 3-138 (457)
393 3d45_A Poly(A)-specific ribonu 80.7 2.5 8.5E-05 49.3 7.3 62 532-597 439-501 (507)
394 1ow1_A Smart/HDAC1 associated 63.6 1 3.5E-05 47.2 -1.2 123 970-1098 34-171 (195)
395 2l9w_A U4/U6 snRNA-associated- 58.8 13 0.00046 36.2 5.6 65 618-682 21-88 (117)
396 1ufw_A Synaptojanin 2; RNP dom 57.4 5.8 0.0002 37.3 2.8 61 619-682 16-83 (95)
397 2dnr_A Synaptojanin-1; RRM dom 55.2 4.7 0.00016 37.6 1.8 51 629-682 22-74 (91)
398 1whv_A Poly(A)-specific ribonu 37.9 65 0.0022 30.7 6.5 56 619-678 16-71 (100)
399 3p3d_A Nucleoporin 53; structu 36.5 22 0.00075 35.3 3.3 46 543-588 16-81 (132)
400 2j1d_G DAAM1, disheveled-assoc 35.8 11 0.00038 43.6 1.3 112 976-1099 9-152 (483)
401 3pm9_A Putative oxidoreductase 31.1 37 0.0013 39.2 4.6 78 526-603 177-268 (476)
402 1twf_A B220, DNA-directed RNA 31.0 10 0.00035 50.4 0.0 8 665-672 1340-1347(1733)
403 4eah_A Formin-like protein 3, 30.3 18 0.00061 41.1 1.8 113 972-1096 9-142 (402)
404 2uuu_A Alkyldihydroxyacetoneph 30.3 26 0.0009 41.5 3.3 77 526-602 266-353 (584)
405 4bby_A Alkyldihydroxyacetoneph 29.1 36 0.0012 40.7 4.2 78 525-602 334-423 (658)
406 1wey_A Calcipressin 1; structu 29.0 32 0.0011 32.9 2.9 62 618-681 5-71 (104)
407 4ffe_X CPXV018 protein; viral 24.3 25 0.00084 34.4 1.3 21 242-262 50-70 (151)
No 1
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.85 E-value=6.3e-21 Score=180.21 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=121.4
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC------ceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~r------gfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.+++||||||+.+++|+||+++|++||+|.++.+.+.+ |||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999997654 99999999999999999999998765 788776
Q ss_pred ccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHh
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
+... ....+.|||++++..++.++|...+..+|.+..+.+. + ...++.++|||.+.++|..|++.|+
T Consensus 81 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 81 PSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 6311 2357899999999999999999999998866655442 2 2236789999999999999999999
Q ss_pred hhccc
Q 001220 678 QHRKS 682 (1121)
Q Consensus 678 ~~r~~ 682 (1121)
++..+
T Consensus 152 g~~~~ 156 (167)
T 1fxl_A 152 GQKPS 156 (167)
T ss_dssp TCCCT
T ss_pred CCccC
Confidence 98754
No 2
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.84 E-value=1.5e-20 Score=179.43 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=119.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--------ccCceEEEEecCHHHHHHHHHhhcCCcee-------
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHFSW------- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~--------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------- 595 (1121)
+.+++||||||+.+++|+||+++|++||+|.++++. ..||||||+|.+.++|.+|++.|+|..+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999986 46899999999999999999999997653
Q ss_pred EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHH
Q 001220 596 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 596 RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A 672 (1121)
++.+.+..-. .....+.||||+++..+++++|...+..+|.+..+.+ .+ ...++.++|+|++.++|..|
T Consensus 81 ~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 81 QMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp EEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred EEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 5666554211 1236889999999999999999999999887665544 22 22356799999999999999
Q ss_pred HHHHhhhcc
Q 001220 673 MAHLRQHRK 681 (1121)
Q Consensus 673 ~~~l~~~r~ 681 (1121)
++.|+++..
T Consensus 153 ~~~l~g~~~ 161 (175)
T 3nmr_A 153 IKAMHQAQT 161 (175)
T ss_dssp HHHHTTSCC
T ss_pred HHHhcCCcc
Confidence 999998764
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.2e-20 Score=178.21 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=121.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 604 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 604 (1121)
|+||||||+.+++++||++.|++||+|.+|++.+ .+|||||+|.+.++|.+|++.|+|..+. +|+++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999964 4699999999999999999999999775 788776532
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.. ...+.+.|||++++..+++++|...+..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++.
T Consensus 81 ~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 81 QS-------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CC-------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CC-------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 21 13478899999999999999999999998876665442 2 3446689999999999999999999887
Q ss_pred cc
Q 001220 681 KS 682 (1121)
Q Consensus 681 ~~ 682 (1121)
.+
T Consensus 154 ~~ 155 (166)
T 3md3_A 154 LN 155 (166)
T ss_dssp ET
T ss_pred cC
Confidence 54
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=1.7e-20 Score=178.35 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=121.0
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
++++||||||+.+++++||++.|++||+|.++.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999999865 4589999999999999999999998765 788776
Q ss_pred ccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHHHHHh
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
+... ...++.|||++++..+++++|...+..+|.+..+.+. +...++.++|||.+.++|..|++.|+
T Consensus 82 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 82 PGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp CCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 6321 2367899999999999999999999998866655442 22335789999999999999999999
Q ss_pred hhcc
Q 001220 678 QHRK 681 (1121)
Q Consensus 678 ~~r~ 681 (1121)
++..
T Consensus 153 g~~~ 156 (168)
T 1b7f_A 153 NVIP 156 (168)
T ss_dssp TCCC
T ss_pred CCEe
Confidence 9875
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=3.3e-20 Score=187.42 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=119.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.++||++|+++|++||+|.+|.+.+ .+|||||+|.+.+||..|++.|+|..+. |+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4678999999999999999999999999999999853 5799999999999999999999998764 56655
Q ss_pred cccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec-cCCCccccccccCHHHHHHHHHHHhh
Q 001220 601 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD-LSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 601 r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D-l~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
..... ......+.||||+++..+++++|..-|..+|.+..+.+ .+ -..++.++|||++.|+|..|++.||+
T Consensus 93 ~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 93 QRDPS-------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCTH-------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccc-------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 43211 11235678999999999999999999999887666544 22 23577899999999999999999998
Q ss_pred hccc
Q 001220 679 HRKS 682 (1121)
Q Consensus 679 ~r~~ 682 (1121)
+..+
T Consensus 166 ~~~~ 169 (213)
T 4f02_A 166 MLLN 169 (213)
T ss_dssp CEET
T ss_pred CEEC
Confidence 7765
No 6
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=1.1e-19 Score=185.40 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=121.6
Q ss_pred CCceEEeccCC-CccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccCC
Q 001220 532 ASKQLWLGSFG-PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 605 (1121)
Q Consensus 532 ~S~~LWVGnL~-~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 605 (1121)
+++.||||||+ .++++++|+++|++||.|.+|++.+ .||||||+|.+.++|..|++.|+|..+. +|+|++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 7999999999999999999999987 6899999999999999999999999775 8888753210
Q ss_pred C--------------Ccc----ccce----------eccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccC---
Q 001220 606 T--------------KGV----INGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS--- 654 (1121)
Q Consensus 606 ~--------------rg~----~~Gv----------~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~--- 654 (1121)
. +.. .+.. ...+++.|||+|++..++.|+|..-|..+|.+....+.-+.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 0 000 0000 01367889999999999999999999998876323333222
Q ss_pred -CCccccccccCHHHHHHHHHHHhhhccc
Q 001220 655 -CEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 655 -ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.++|||++.|||..|++.||++..+
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 2478999999999999999999998755
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=8.2e-20 Score=180.70 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=122.8
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 597 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 597 (1121)
+-...+++||||||+.+++|+||+++|++||+|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3455689999999999999999999999999999999854 5899999999999999999999998776 45
Q ss_pred EEecccCCCCcccc--ceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHH
Q 001220 598 KFMDVGLGTKGVIN--GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATT 671 (1121)
Q Consensus 598 ~F~r~~~g~rg~~~--Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~ 671 (1121)
.+............ .......+.|||++++..+++|+|...|..++.+..+.+ .+ ...++.++|||.+.|+|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 44432100000000 001236689999999999999999999999886666544 22 2336789999999999999
Q ss_pred HHHHHhhhccc
Q 001220 672 AMAHLRQHRKS 682 (1121)
Q Consensus 672 A~~~l~~~r~~ 682 (1121)
|++.|+++..+
T Consensus 183 A~~~l~g~~~~ 193 (216)
T 2qfj_A 183 AVSSMNLFDLG 193 (216)
T ss_dssp HHHHHTTCBCS
T ss_pred HHHHccCCEeC
Confidence 99999998765
No 8
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=176.31 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=122.1
Q ss_pred CceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC--
Q 001220 533 SKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL-- 604 (1121)
Q Consensus 533 S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~-- 604 (1121)
+++||||||+. ++++++|+++|++||.|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 68999999999 999999999999999999999987 5799999999999999999999998765 888886531
Q ss_pred ----CCC--ccc-------------cc-----eeccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeeccCCCccc
Q 001220 605 ----GTK--GVI-------------NG-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGAL 659 (1121)
Q Consensus 605 ----g~r--g~~-------------~G-----v~~~~s~~LwVG~iss~~~keELf~E~~kag-~kgpv~f~Dl~ek~~L 659 (1121)
+.. +.. .+ ....+++.|||+|++..+++|+|...+..+| .+..+.+. -..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~-~~~~g~a 161 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMA 161 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES-STTSSCE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE-eCCCcEE
Confidence 000 000 00 0023589999999999999999999999987 55554331 1358999
Q ss_pred cccccCHHHHHHHHHHHhhhccc
Q 001220 660 LMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 660 pVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+|||.+.++|..|++.|+++..+
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCS
T ss_pred EEEeCCHHHHHHHHHHhcCCccC
Confidence 99999999999999999998754
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.80 E-value=1.2e-19 Score=173.65 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=119.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~f----G-------pLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
.++++||||||+.++|++||++.|++| | +|.++.+.++||||||+|.+.+||.+|+ .|+|..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 468999999999999999999999999 7 8889999999999999999999999999 89998775
Q ss_pred EEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHH
Q 001220 596 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATT 671 (1121)
Q Consensus 596 RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~ 671 (1121)
+|++..... .....+.|||||++..+++++|...+..+|.+..+.+ .+ ...++.++|+|.+.++|..
T Consensus 81 ~v~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 81 KIRRPHDYQ---------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp EEECCSSCC---------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred eecCCcccC---------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 455443311 1234799999999999999999999999886665544 22 2336789999999999999
Q ss_pred HHHHHhhhccc
Q 001220 672 AMAHLRQHRKS 682 (1121)
Q Consensus 672 A~~~l~~~r~~ 682 (1121)
|++.|+++..+
T Consensus 152 A~~~l~g~~~~ 162 (172)
T 2g4b_A 152 AIAGLNGMQLG 162 (172)
T ss_dssp HHHHHTTCEET
T ss_pred HHHHcCCCEEC
Confidence 99999997754
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.80 E-value=2.7e-19 Score=182.64 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=123.2
Q ss_pred cCCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC
Q 001220 531 SASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 604 (1121)
Q Consensus 531 ~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 604 (1121)
.++++||||||+. ++++++|+++|++||.|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 5789999999999 999999999999999999999987 4799999999999999999999998765 888886431
Q ss_pred ------CCC---------------ccccc-----eeccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeeccCCCc
Q 001220 605 ------GTK---------------GVING-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEG 657 (1121)
Q Consensus 605 ------g~r---------------g~~~G-----v~~~~s~~LwVG~iss~~~keELf~E~~kag-~kgpv~f~Dl~ek~ 657 (1121)
+.. ..-.+ ....+++.|||+|++..+++++|...|..+| .+..+.+. -..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~-~~~~g 190 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRK 190 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-SSSTT
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE-ECCCc
Confidence 000 00000 0123589999999999999999999999987 44444331 13689
Q ss_pred cccccccCHHHHHHHHHHHhhhccc
Q 001220 658 ALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 658 ~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++|||++.++|..|++.|+++..+
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEEECCHHHHHHHHHHHCCCccC
Confidence 9999999999999999999998754
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=1.8e-19 Score=176.02 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=120.9
Q ss_pred CCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----R 596 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~f----G-------pLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 596 (1121)
.+|+||||||+.+++|+||+++|++| | .|.++.+.+.||||||+|.+.+||.+|+ .|+|..+. +
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 58999999999999999999999999 6 7888888889999999999999999999 89998765 5
Q ss_pred EEEecccCCCC-----------ccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccc
Q 001220 597 VKFMDVGLGTK-----------GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLM 661 (1121)
Q Consensus 597 I~F~r~~~g~r-----------g~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpV 661 (1121)
|+++....... +........+.+.||||+++..+++++|...+..+|.+..+.+. ....++.++|
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 55554321111 11122222478999999999999999999999998866555442 2233678999
Q ss_pred cccCHHHHHHHHHHHhhhccc
Q 001220 662 EFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 662 EF~t~edA~~A~~~l~~~r~~ 682 (1121)
||++.++|..|++.|+++..+
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEET
T ss_pred EECCHHHHHHHHHHcCCCEEC
Confidence 999999999999999998765
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.79 E-value=3.6e-19 Score=184.87 Aligned_cols=151 Identities=11% Similarity=0.199 Sum_probs=123.2
Q ss_pred ccCCceEEeccCCCccCHHHHH----HHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
..++++||||||+.+++++||+ ++|++||.|.+|++.+ .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3679999999999999999977 8999999999999865 8899999999999999999999998765 788
Q ss_pred EecccCCCC----------------------------------------ccccc--------------------------
Q 001220 599 FMDVGLGTK----------------------------------------GVING-------------------------- 612 (1121)
Q Consensus 599 F~r~~~g~r----------------------------------------g~~~G-------------------------- 612 (1121)
|++...... +...|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 886532100 00000
Q ss_pred ------------------------------------eeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCC-
Q 001220 613 ------------------------------------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC- 655 (1121)
Q Consensus 613 ------------------------------------v~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~e- 655 (1121)
....+++.||||+++..+++|+|...|..+|.+..+.+. .+
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~--~~~ 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--PGR 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--cCC
Confidence 011267889999999999999999999998876665443 33
Q ss_pred CccccccccCHHHHHHHHHHHhhhccc
Q 001220 656 EGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 656 k~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
++.++|||.+.++|..|++.|+++..+
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 489999999999999999999997754
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.79 E-value=4.9e-19 Score=184.34 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=119.9
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.-...+++||||||+.++|++||+.+|++||.|.+|.+.++||||||+|.+.++|..|++.|+|..+. +|+++.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 34567899999999999999999999999999999999999999999999999999999999998765 6776644
Q ss_pred CCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhh
Q 001220 604 LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 604 ~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
++.|||||++..+++++|...|..+|.+..+.+ .+ ...++.++|||.+.++|..|++.|++
T Consensus 96 --------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 --------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp --------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred --------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 678999999999999999999999886666544 33 33467899999999999999999965
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=4.2e-19 Score=184.51 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=142.7
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccCC
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 605 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 605 (1121)
+..+++||||||+.+++++||+++|++|| |.++.+-..+|||||+|.+.+||..|++.|+|..+. +|++..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 45789999999999999999999999999 999999889999999999999999999999998765 555543
Q ss_pred CCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 606 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 606 ~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..+.|||||++..++.++|...+..+|.+..+.+. + ...++.++|||.+.++|..|++.|+++..
T Consensus 94 -----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 -----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp -----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred -----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 36799999999999999999999998876665442 2 33467899999999999999999999776
Q ss_pred c----cCCCCCCCCCCCCCcccccCCCCCCCCcceEE-eecc-----cccccccccCCCCcccccccC
Q 001220 682 S----RSNYLPPNTGPANAAMSQIDGARSVPAAPIHV-DIRS-----NRLGNISAGGFGSPHTAPFHS 739 (1121)
Q Consensus 682 ~----rs~~~~~~~~~~~~~~~~~d~~~~~Ps~~lwi-~~p~-----~~~~nlA~~~fGei~rfqidF 739 (1121)
+ +..+..+ ........+..+|+| ++|. +.+.. .+..||.|+.+++-.
T Consensus 163 ~g~~i~v~~a~~----------~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~-~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 163 GPRTLYVHWTDA----------GQLTPALLHSRCLCVDRLPPGFNDVDALCR-ALSAVHSPTFCQLAC 219 (284)
T ss_dssp TTEECEEEECCG----------GGCCTTTTSCSEEEEECCCTTCCCHHHHHH-HTCSSSCCSEEEEEE
T ss_pred CCcEEEEEECCC----------CCCCcccCCccEEEEecCCcccCCHHHHHH-HhhCCCCeEEEEEEE
Confidence 5 1111111 001112355666665 4552 23344 788999999888733
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.78 E-value=6.2e-19 Score=169.85 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=116.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce-----EEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-----FFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~-----v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
..+++||||||+.+++++||++.|..||.+.. ...-..||||||+|.+.+||.+|++ |+|..+. +|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 35899999999999999999999999997655 3334589999999999999999995 9998775 566554
Q ss_pred ccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..-. .....++.|||||++..++.++|...+..++.+.-+ ......++.++|||.+.++|..|++.|+++..
T Consensus 90 ~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 90 GRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred Cccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4211 123478999999999999999999999987644332 23356788999999999999999999998775
Q ss_pred c
Q 001220 682 S 682 (1121)
Q Consensus 682 ~ 682 (1121)
+
T Consensus 162 ~ 162 (175)
T 1fje_B 162 D 162 (175)
T ss_dssp T
T ss_pred C
Confidence 4
No 16
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=4.5e-19 Score=172.93 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=111.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.++||+||+++|++||+|.+|.+.. .||||||+|.+.+||..|++. +|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4689999999999999999999999999999999864 478999999999999999987 665543 66666
Q ss_pred cccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHH
Q 001220 601 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 601 r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
....... ..-....++.|||||++..++.|+|...|..+|.+..+.+. + ...++.++|||++.++|..|++.
T Consensus 90 ~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 90 VSREDSQ---RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CC--------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cCccccc---ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 4421111 11112367899999999999999999999998876666443 2 33467899999999999999975
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=1.9e-19 Score=171.36 Aligned_cols=140 Identities=10% Similarity=0.096 Sum_probs=113.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHh---hcCCceeEEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~---L~G~~~~RI~F~r 601 (1121)
.++++||||||+.++||++|+++|++||+|.+|.+.+ .||||||+|.+.++|..|++. |+|+.+ +++++.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i-~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI-DPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC-CCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc-cccccc
Confidence 3689999999999999999999999999999999864 469999999999999999997 555332 444443
Q ss_pred ccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHh
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
+. .....++.|||||++..+++++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|++ |+
T Consensus 80 ~~---------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 80 PR---------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp CH---------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred ch---------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 21 012367899999999999999999999998876665442 2 3456799999999999999998 66
Q ss_pred hhcc
Q 001220 678 QHRK 681 (1121)
Q Consensus 678 ~~r~ 681 (1121)
++..
T Consensus 150 ~~~~ 153 (167)
T 2cjk_A 150 FIDF 153 (167)
T ss_dssp EECS
T ss_pred CEEe
Confidence 6544
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.78 E-value=8.8e-19 Score=182.78 Aligned_cols=187 Identities=12% Similarity=0.156 Sum_probs=136.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccC
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 604 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 604 (1121)
..+++||||||+.+++++||+++|++||+|.+|++.+ .+|||||+|.+.+||..|++ |+|..+. .|+....
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-- 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-- 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC--
Confidence 4689999999999999999999999999999999976 68999999999999999995 9998765 3332211
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeec---cCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag-~kgpv~f~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.++.|||||++..++.++|...|..+| .+..+.+.. ...++.++|+|.+.++|..|++.|+++.
T Consensus 116 ------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 116 ------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp ------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 478999999999999999999999988 666554421 3467889999999999999999999987
Q ss_pred cc----cCCCCCCCCCCCCCcccccCCCCCCCCcceEEe-eccc-----ccccccccCCCCcccccccC
Q 001220 681 KS----RSNYLPPNTGPANAAMSQIDGARSVPAAPIHVD-IRSN-----RLGNISAGGFGSPHTAPFHS 739 (1121)
Q Consensus 681 ~~----rs~~~~~~~~~~~~~~~~~d~~~~~Ps~~lwi~-~p~~-----~~~nlA~~~fGei~rfqidF 739 (1121)
.+ +.++...... .. ..+ ....+..+|+|+ +|.+ .|.. .+..||+|..+++-.
T Consensus 184 ~~g~~l~v~~a~~~~~-~~----~~~-~~~~~~~~l~v~nlp~~~~t~~~l~~-~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEK-SK----RTD-SATLEGREIMIRNLSTELLDENLLRE-SFEGFGSIEKINIPA 245 (292)
T ss_dssp ETTEECEEEECCCC---------------CCTTTEEEEEEECTTTCCHHHHHH-HHGGGSCEEEEECCS
T ss_pred eCCcEEEEEECCCCcc-cc----ccc-ccCCCCceEEEECCCcccCCHHHHHH-HHhccCCeeEEEEEe
Confidence 65 1111110000 00 000 123566777765 5533 3344 778899999988833
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=1.3e-17 Score=173.29 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=129.7
Q ss_pred ecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 520 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 520 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
++|-+.-....+..++||||||+.+++++||+++|+.||.|.++.+.. .+|||||+|.+.++|.+|++.|+|..
T Consensus 82 ~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 82 LRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp ETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred eCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 445555555567789999999999999999999999999999998753 47899999999999999999999987
Q ss_pred ee----EEEEecccCCCCccccceeccccceEEEccCCCcc-hhHHHHHhhhcccccCCcee-ec--cCCCccccccccC
Q 001220 594 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQW-AKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRT 665 (1121)
Q Consensus 594 ~~----RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~-~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t 665 (1121)
+. +|+++++.-.. .....++.|||+|++..+ ++|+|...+..+|.+..+.+ .+ ...++.++|+|.+
T Consensus 162 ~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp ETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred eCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 65 78888663111 112467899999999996 88999999999887666543 22 3457899999999
Q ss_pred HHHHHHHHHHHhhhccc
Q 001220 666 PEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 666 ~edA~~A~~~l~~~r~~ 682 (1121)
.++|..|++.|+++..+
T Consensus 236 ~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLG 252 (284)
T ss_dssp HHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHHHhCCCccC
Confidence 99999999999998765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=2e-17 Score=172.61 Aligned_cols=148 Identities=13% Similarity=0.092 Sum_probs=120.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.+++||||||+.++++++|+++|++|| +|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 589999999999999999999999999 999999864 6899999999999999999999998775 788887
Q ss_pred ccCCCCccccceeccccceEEEccCCCc-chhHHHHHhhhcccccCCceee-c----cCCCccccccccCHHHHHHHHHH
Q 001220 602 VGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 602 ~~~g~rg~~~Gv~~~~s~~LwVG~iss~-~~keELf~E~~kag~kgpv~f~-D----l~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
+.-.... .......++.|||+|++.. +++++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+ .
T Consensus 196 ~~~~~~~--~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 196 PLEKSKR--TDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCccccc--ccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 6422110 0112346899999999999 9999999999998866655442 2 345778999999999999999 9
Q ss_pred Hhhhccc
Q 001220 676 LRQHRKS 682 (1121)
Q Consensus 676 l~~~r~~ 682 (1121)
|+++..+
T Consensus 273 l~g~~~~ 279 (292)
T 2ghp_A 273 MNRSLLG 279 (292)
T ss_dssp GTTEEET
T ss_pred hcCCEEC
Confidence 9998765
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=3.6e-16 Score=145.22 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=64.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 604 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 604 (1121)
+.+||||||+.+++|+||+++|++||+|.+|.+.+ +||||||+|.+.+||.+|++.|+|..+. +|+++.+.-
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 56899999999999999999999999999999865 5899999999999999999999999775 777776531
Q ss_pred CCCccccceeccccceEEEccCCCcchhH
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKD 633 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~ke 633 (1121)
.+..-.+-......+|||++++..+++|
T Consensus 85 -~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 -EREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -C---------------------------
T ss_pred -ccccccccccCCCCceEeCCCCCCcccc
Confidence 1111222234466789999999998876
No 22
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.6e-15 Score=131.38 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=71.1
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.-....++++||||||+.+++++||+++|++||+|++|.+.+.||||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3345678999999999999999999999999999999999999999999999999999999999998765 888887
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 23
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=9.3e-15 Score=131.32 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=76.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-CceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccCCCCc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKG 608 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g~rg 608 (1121)
++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+++++....+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~- 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS- 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc-
Confidence 57999999999999999999999999999999884 999999999999999999999998765 899987642111
Q ss_pred cccceec---cccceEEEccCC
Q 001220 609 VINGVAV---GSCFHVYVGNIP 627 (1121)
Q Consensus 609 ~~~Gv~~---~~s~~LwVG~is 627 (1121)
-.|-+. ..+..||||++.
T Consensus 80 -~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 -RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp -CCCSCCCSCCCCSCCCSCCCC
T ss_pred -cCCCCCccccCCCceecCCCC
Confidence 111111 247889999985
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=135.86 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=68.3
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce------eEEEE
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS------WRVKF 599 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~------~RI~F 599 (1121)
.+....+++.||||||+.++||+||+++|++||.|.+|.+.+.||||||+|++.++|.+|+++|+|..+ .+|.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 456678999999999999999999999999999999999999999999999999999999999998753 27777
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+.+
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=134.00 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=69.9
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEE
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKF 599 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~--~----~RI~F 599 (1121)
.+.-..+++.||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.+||.+|++.|+|+. + .+|+|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999998764 2 28999
Q ss_pred eccc
Q 001220 600 MDVG 603 (1121)
Q Consensus 600 ~r~~ 603 (1121)
++..
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8764
No 26
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=131.04 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=68.0
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCC--ce----eEEEEe
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FS----WRVKFM 600 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~--~~----~RI~F~ 600 (1121)
..-..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.++|..|++.|+|. .+ .+|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 344568999999999999999999999999999999999999999999999999999999998653 23 288888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
+.+
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 763
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=129.56 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=65.9
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
+.-.+.+||||||+.++||+||+++|++||+|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999853 5789999999999999999999999765 888
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
|++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8876
No 28
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=136.41 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=61.2
Q ss_pred cCCceEEe--ccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 531 SASKQLWL--GSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 531 ~~S~~LWV--GnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
.++++||| |||+.+++|++|+++|++||.|++|++.++||||||+|.+.+||.+|++.|+|+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46899999 88999999999999999999999999988999999999999999999999999865
No 29
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-14 Score=133.46 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEEecc
Q 001220 532 ASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~--~----~RI~F~r~ 602 (1121)
++++||||||+. +++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.. + .+|.|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 789999999999 99999999999999999999999999999999999999999999999864 2 27888865
No 30
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.6e-14 Score=121.24 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=64.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhh-cCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-RNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L-~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||++.|++||+|.++.+.++||||||+|.+.++|..|++.| +|..+. +|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999 887654 66665
No 31
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=123.97 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=67.6
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEecc
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 602 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~ 602 (1121)
-.++++||||||+.+++++||+++|++||+|++|.+.+.||||||+|.+.+||.+|++.|+|..+. +|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 457899999999999999999999999999999999999999999999999999999999987553 7888866
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=122.96 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=70.7
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
+.+....+++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||.+|++.|+|..+.
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 445566899999999999999999999999999999999965 5789999999999999999999998765
Q ss_pred EEEEecccC
Q 001220 596 RVKFMDVGL 604 (1121)
Q Consensus 596 RI~F~r~~~ 604 (1121)
+|+|+++.-
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 899997743
No 33
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.5e-14 Score=133.31 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=66.9
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCC--ce----eEEEEeccc
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FS----WRVKFMDVG 603 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~--~~----~RI~F~r~~ 603 (1121)
..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.++|.+|++.|+|. .+ .+|+|+++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 467899999999999999999999999999999999999999999999999999999998853 22 389998763
No 34
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=132.32 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=64.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCC--cee----EEEEecc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FSW----RVKFMDV 602 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~--~~~----RI~F~r~ 602 (1121)
.++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|. .+. +|+|+++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 46899999999999999999999999999999999999999999999999999999999863 332 6777755
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.7e-13 Score=123.59 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=68.5
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
.--..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3446789999999999999999999999999999999876 6899999999999999999999998764 8888
Q ss_pred eccc
Q 001220 600 MDVG 603 (1121)
Q Consensus 600 ~r~~ 603 (1121)
+++.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8764
No 36
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=133.04 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=66.4
Q ss_pred ccCCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEEecc
Q 001220 530 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKFMDV 602 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~--~----~RI~F~r~ 602 (1121)
..++++||||||+.+ ++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.. + .+|.|+..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 457999999999998 9999999999999999999999999999999999999999999997643 2 28888865
No 37
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.7e-14 Score=125.38 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=64.9
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.+++||||||+.+++++||+++|++||.|.++.+.+.||||||+|.+.++|..|++.|+|..+. +|+|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4789999999999999999999999999999999999999999999999999999999998764 5555543
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.45 E-value=1.4e-13 Score=122.94 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
|+++||||||+.+++++||++.|++||+|.++.+... +|||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999998643 899999999999999999999998765 888886
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 6
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=120.06 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=67.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
+++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4689999999999999999999999999999999965 3789999999999999999999998765 89999
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 40
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.45 E-value=8.2e-14 Score=128.36 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=64.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
|..||||||.+.+||++|+++|.+||+|.+|.+..+||||||+|.+.+||..|++.|+|..+. ||+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 778999999999999999999999999999999999999999999999999999999998765 77776
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.45 E-value=1.5e-13 Score=118.56 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=64.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
|.+||||||+.+++++||++.|++||+|.++.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 578999999999999999999999999999998754 899999999999999999999998765 7888765
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.45 E-value=1.6e-13 Score=118.85 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=64.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5789999999999999999999999999999999843 5999999999999999999999998765 67665
Q ss_pred c
Q 001220 601 D 601 (1121)
Q Consensus 601 r 601 (1121)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=120.09 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=65.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+. ||||||+|.+.++|.+|++.|+|..+. +|+++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 468999999999999999999999999999999987 899999999999999999999998765 88888764
No 44
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=125.00 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=68.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
...++||||||+.+++++||+++|++||.|.+|.+.+.||||||+|.+.++|..|++.|+|..+. +|+|+++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45789999999999999999999999999999999999999999999999999999999998765 88888774
No 45
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=119.06 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=63.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||++.|++||+|.++.+... +|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999998653 799999999999999999999998765 78887
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=120.93 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=66.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceE-EEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v-~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
+++++||||||+.+++++||+++|++||+|.++ ++.. .+|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 8765 4899999999999999999999998765 8888
Q ss_pred eccc
Q 001220 600 MDVG 603 (1121)
Q Consensus 600 ~r~~ 603 (1121)
+++.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8663
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=123.39 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=68.5
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 597 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 597 (1121)
+...++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456899999999999999999999999999999999854 5899999999999999999999998765 88
Q ss_pred EEeccc
Q 001220 598 KFMDVG 603 (1121)
Q Consensus 598 ~F~r~~ 603 (1121)
+|+++.
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 888764
No 48
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.4e-13 Score=121.87 Aligned_cols=75 Identities=12% Similarity=0.230 Sum_probs=65.7
Q ss_pred cccccCCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 527 MDIFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
++-..++++||||||+. +++++||+++|++||+|.+|.+ .||||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 4 ~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 45567899999999999 9999999999999999999998 4899999999999999999999998775 899986
Q ss_pred cc
Q 001220 602 VG 603 (1121)
Q Consensus 602 ~~ 603 (1121)
+.
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.4e-13 Score=121.27 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=66.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---------ccCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYIRNHFSW----RV 597 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~---------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 597 (1121)
.++++||||||+.+++|+||+++|++||+|.+|.+. ..||||||+|.+.++|.+|++.|+|..+. +|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 468999999999999999999999999999999986 34789999999999999999999998765 78
Q ss_pred EEeccc
Q 001220 598 KFMDVG 603 (1121)
Q Consensus 598 ~F~r~~ 603 (1121)
+++++.
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 888764
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=127.13 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=65.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++|++|+++|++||+|.+|.+.. +||||||+|++.+||.+|++.|+|+.+. +|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999852 6899999999999999999999999765 77777
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
+.
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.2e-13 Score=121.93 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=67.6
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-------CceEEEEecCHHHHHHHHHhh-cCCcee----EE
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------KGFALVEYINIIDAIRAREYI-RNHFSW----RV 597 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-------rgfAFVeF~~i~DAv~A~~~L-~G~~~~----RI 597 (1121)
-.++++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||.+|++.| +|..+. +|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 357899999999999999999999999999999999765 899999999999999999999 888764 89
Q ss_pred EEeccc
Q 001220 598 KFMDVG 603 (1121)
Q Consensus 598 ~F~r~~ 603 (1121)
+|+++.
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998774
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-13 Score=120.20 Aligned_cols=74 Identities=22% Similarity=0.177 Sum_probs=65.8
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
--.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999999999999853 5789999999999999999999998764 677
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 6654
No 53
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=119.20 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=65.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
..+++||||||+.+++++||+++|++||+|.++.+. ++||||+|.+.+||.+|++.|+|..+. +|+++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 468999999999999999999999999999999987 569999999999999999999998765 88888764
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=120.50 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=65.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.++++||||||+.+++++||+++|++||+|++|.+... ||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 46799999999999999999999999999999998753 799999999999999999999998765 677765
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=118.71 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=65.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++||||||+.+++++||+++|++||+|.++.+. ++||||+|.+.++|..|++.|+|..+. +|+++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 468999999999999999999999999999999987 569999999999999999999998765 88888764
No 56
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=125.91 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=66.5
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.+++||||||+.+++++||+++|++||+|.+|.+.+.||||||+|.+.+||..|++.|+|..+. +|+|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3689999999999999999999999999999999999999999999999999999999998765 8888865
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.3e-13 Score=122.25 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 4679999999999999999999999999999999865 5789999999999999999999998765 88888764
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.4e-13 Score=120.23 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=67.6
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
-..+++||||||+.+++++||+++|++||+|++|.+... +|||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 356899999999999999999999999999999999764 899999999999999999999998765 888887
Q ss_pred cc
Q 001220 602 VG 603 (1121)
Q Consensus 602 ~~ 603 (1121)
+.
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 59
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.42 E-value=3.9e-13 Score=121.62 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=65.1
Q ss_pred cccCCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 529 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
-.+++++||||||+. +++++||+++|++||.|.++.+ .||||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345789999999998 9999999999999999999998 4899999999999999999999998764 7777755
No 60
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.42 E-value=4.2e-13 Score=123.19 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=80.4
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecccC
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 604 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 604 (1121)
+++.||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~- 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN- 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC-
Confidence 579999999999999999999999999999999854 6899999999999999999999998775 88888662
Q ss_pred CCCccccceeccccceEEEccCCCcchhHHHHHhhhcccc
Q 001220 605 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY 644 (1121)
Q Consensus 605 g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~ 644 (1121)
+ .. +++.....+++|..-+.++|.
T Consensus 86 --~----------~~----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 --R----------AF----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp --H----------HT----TTSCHHHHHHHHHHHHHHHCC
T ss_pred --h----------hh----hhhhHhHhHHHHHHHHHHhCC
Confidence 1 11 456666777777776666554
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=125.23 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=67.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
..+++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999764 599999999999999999999998765 899997
Q ss_pred cc
Q 001220 602 VG 603 (1121)
Q Consensus 602 ~~ 603 (1121)
+.
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.42 E-value=3.7e-13 Score=121.44 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=66.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCce-------eEEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS-------WRVK 598 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~-------~RI~ 598 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.+||.+|++.|+|..+ .+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999865 89999999999999999999999753 3788
Q ss_pred Eeccc
Q 001220 599 FMDVG 603 (1121)
Q Consensus 599 F~r~~ 603 (1121)
|+++.
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 88663
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.41 E-value=3.7e-13 Score=117.08 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.+++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999843 7899999999999999999999998775 78887
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=121.63 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=67.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 3789999999999999999999999999999999984 5999999999999999999999999765 8999876
Q ss_pred c
Q 001220 603 G 603 (1121)
Q Consensus 603 ~ 603 (1121)
.
T Consensus 93 ~ 93 (103)
T 2d9p_A 93 K 93 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 65
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.41 E-value=5.2e-13 Score=120.67 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=66.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce---e----EE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS---W----RV 597 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~---~----RI 597 (1121)
..+++||||||+.+++|+||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+ . +|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4678999999999999999999999999999999865 579999999999999999999999875 3 88
Q ss_pred EEeccc
Q 001220 598 KFMDVG 603 (1121)
Q Consensus 598 ~F~r~~ 603 (1121)
++++..
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 888763
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=118.43 Aligned_cols=71 Identities=10% Similarity=0.216 Sum_probs=64.0
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
-.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45789999999999999999999999999999999964 4789999999999999999999998765 6666
Q ss_pred e
Q 001220 600 M 600 (1121)
Q Consensus 600 ~ 600 (1121)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 67
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.3e-13 Score=121.17 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=66.7
Q ss_pred ccCCceEEeccCCCccCHHHHH----HHhhccCCcceEEEecc---CceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFPI---KGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~v~~~~~---rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
+...++||||||+.+++++||+ ++|++||+|.+|.+... ||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 99999999999999754 999999999999999999999998765 788
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
++++
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8866
No 68
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=3e-13 Score=120.18 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=72.2
Q ss_pred ecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-ccCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001220 520 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW--- 595 (1121)
Q Consensus 520 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~-~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 595 (1121)
++.+|..+.--.++++||||||+.+++++||+++|++||.|..+... ..||||||+|.+.+||..|++.|+|..+.
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34466667777789999999999999999999999999999988322 37999999999999999999999998664
Q ss_pred -EEEEeccc
Q 001220 596 -RVKFMDVG 603 (1121)
Q Consensus 596 -RI~F~r~~ 603 (1121)
+|+|+++.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 78888764
No 69
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.41 E-value=3.9e-13 Score=127.16 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=66.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++|+||+++|++||+|++|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3899999999999999999999998765 88888
Q ss_pred cccC
Q 001220 601 DVGL 604 (1121)
Q Consensus 601 r~~~ 604 (1121)
++.-
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7753
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.40 E-value=4.3e-13 Score=118.11 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=67.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
+++++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|.+.+||..|++.|+|..+. +|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4689999999999999999999999999999999875 6899999999999999999999998765 8888876
Q ss_pred c
Q 001220 603 G 603 (1121)
Q Consensus 603 ~ 603 (1121)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 71
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.7e-13 Score=120.12 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=64.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhcC-Ccee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRN-HFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G-~~~~----RI~F~r~~ 603 (1121)
..+++||||||+.+++++||+++|++||. |+.+.+ ..+|||||+|.+.+||..|++.|+| ..+. +|+++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 46799999999999999999999999999 777766 6799999999999999999999999 6554 88888763
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.8e-13 Score=119.00 Aligned_cols=72 Identities=17% Similarity=0.362 Sum_probs=64.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEecc------CceEEEEecCHHHHHHHHHhhcCCce--------e
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS--------W 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe-~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~--------~ 595 (1121)
.++++||||||+.+++|+||+++|++||+|. ++.+.+. +|||||+|.+.+||.+|++.|+|..+ .
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4789999999999999999999999999999 9998654 59999999999999999999999754 3
Q ss_pred EEEEecc
Q 001220 596 RVKFMDV 602 (1121)
Q Consensus 596 RI~F~r~ 602 (1121)
+|+|+++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 6777765
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.3e-13 Score=121.22 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEec------cCceEEEEecCHHHHHHHHH
Q 001220 522 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP------IKGFALVEYINIIDAIRARE 587 (1121)
Q Consensus 522 g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe--------~v~~~~------~rgfAFVeF~~i~DAv~A~~ 587 (1121)
|.|...+--..+++||||||+.+++++||+++|++||.|. .|.+.. .||||||+|.+.++|..|++
T Consensus 4 g~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 4 GSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp SCCCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 3444444556789999999999999999999999999999 588764 37999999999999999999
Q ss_pred hhcCCcee----EEEEeccc
Q 001220 588 YIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 588 ~L~G~~~~----RI~F~r~~ 603 (1121)
.|+|..+. +|+++++.
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHTTCEETTEECEEECSSCC
T ss_pred HcCCCccCCCEEEEEECCCC
Confidence 99998765 78888663
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.1e-13 Score=120.21 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=66.1
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
-.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999864 3799999999999999999999998765 8888
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+++
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 765
No 75
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=4.5e-13 Score=119.03 Aligned_cols=73 Identities=12% Similarity=0.330 Sum_probs=66.7
Q ss_pred ccCCceEEeccCCCccCHHHHH----HHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~v~~~---~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
-.++++||||||+.+++++||+ +.|++||.|.+|.+. ..+|||||+|.+.++|..|++.|+|..+. +|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4688999999999999999999 999999999999987 47899999999999999999999998765 788
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
|+++
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8866
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.5e-13 Score=122.78 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=66.5
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
-..+++||||||+.+++++||++.|++||+|++|.+.. .||||||+|.+.+||.+|++.|+|..+. +|++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999975 3899999999999999999999998765 788776
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 106 ~ 106 (109)
T 2err_A 106 A 106 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.8e-13 Score=119.52 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=66.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|++|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4689999999999999999999999999999999865 4699999999999999999999998664 88888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 663
No 78
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.39 E-value=6.5e-13 Score=119.19 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=62.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 595 (1121)
.+.++||||||+.+++++||++.|++||.|.+ +.+.. .||||||+|.+.+||..|++.|+|..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 88764 3789999999999999999999998764
Q ss_pred ---EEEEe
Q 001220 596 ---RVKFM 600 (1121)
Q Consensus 596 ---RI~F~ 600 (1121)
+|+++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 66665
No 79
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7e-13 Score=121.26 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=68.9
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----R 596 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 596 (1121)
+.+--.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.+||..|++.|+|..+. +
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3444567899999999999999999999999999999998764 899999999999999999999998775 8
Q ss_pred EEEecc
Q 001220 597 VKFMDV 602 (1121)
Q Consensus 597 I~F~r~ 602 (1121)
|++++.
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 888865
No 80
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.39 E-value=5.5e-13 Score=122.40 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=67.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||.|++|.+... +|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 56899999999999999999999999999999998754 799999999999999999999998765 88998
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 81
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.39 E-value=5.6e-13 Score=123.18 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=65.7
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
-..+++||||||+.+++++||++.|++||+|+++.+. ||||||+|.+.+||..|++.|+|..+. +|+|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3568999999999999999999999999999999998 999999999999999999999998765 7887765
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.39 E-value=7.7e-13 Score=123.22 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=69.2
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----R 596 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 596 (1121)
-+...++++||||||+.+++++||+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+|..+. +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344566899999999999999999999999999999998653 899999999999999999999998775 8
Q ss_pred EEEeccc
Q 001220 597 VKFMDVG 603 (1121)
Q Consensus 597 I~F~r~~ 603 (1121)
|+|+.+.
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9999764
No 83
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=8.1e-13 Score=120.88 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=65.7
Q ss_pred ccCCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 530 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
-..+++||||||+.+ ++++||+++|++||+|++|.+ .||||||+|.+.+||.+|++.|+|..+. +|++++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 346799999999999 999999999999999999999 7999999999999999999999998765 8888864
No 84
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.5e-13 Score=119.11 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=65.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.++++||||||+.+++++||+++|++||+|.+|++.. .||||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4578999999999999999999999999999999875 3599999999999999999999998664 788876
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 95 ~ 95 (100)
T 2do4_A 95 S 95 (100)
T ss_dssp C
T ss_pred C
Confidence 6
No 85
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=121.10 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=62.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccC-CcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCc-e----eEEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHF-S----WRVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~-~----~RI~F~ 600 (1121)
|+.||||||+.++||+||+++|++|| .|.+|++. .+||||||+|.+.+||.+|++.|++.. + .+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 89999874 368999999999999999999986543 2 278888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 763
No 86
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=7.2e-13 Score=127.26 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=65.9
Q ss_pred ccCCceEEeccCCCccCHHHHH----HHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~v~~~---~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
..++++||||||+.+++++||+ ++|++||+|.+|.+. ..||||||+|.+.+||..|++.|+|..+. +|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3568999999999999999976 689999999999985 47999999999999999999999998765 899
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
|++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8866
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.8e-13 Score=120.92 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=65.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhc-C-Ccee----E
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIR-N-HFSW----R 596 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~v~~~-------~~rgfAFVeF~~i~DAv~A~~~L~-G-~~~~----R 596 (1121)
.++++||||||+.+++++||+++|++||+ |.+|.+. ..||||||+|.+.++|..|++.|+ | ..+. +
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999999 9999987 579999999999999999999996 4 5543 8
Q ss_pred EEEeccc
Q 001220 597 VKFMDVG 603 (1121)
Q Consensus 597 I~F~r~~ 603 (1121)
|+++++.
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998764
No 88
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.3e-12 Score=125.90 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=65.9
Q ss_pred ccccCCce--EEeccCCCccCHHHHHHHhhccCCcceEEEeccCce-EEEEecCHHHHHHHHHhhcCCcee------EEE
Q 001220 528 DIFSASKQ--LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF-ALVEYINIIDAIRAREYIRNHFSW------RVK 598 (1121)
Q Consensus 528 dv~~~S~~--LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgf-AFVeF~~i~DAv~A~~~L~G~~~~------RI~ 598 (1121)
|-..+++- ||||||+..+++++|+++|++||.|.+|+++..+|| |||+|.+.+||.+|++.|+|..+. ||.
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 44456655 579999999999999999999999999999775697 999999999999999999999762 788
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
|+++
T Consensus 98 ~Ak~ 101 (124)
T 2e5i_A 98 YARP 101 (124)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8876
No 89
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=9.8e-13 Score=117.77 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=65.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++ |+|..+. +|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999999864 58999999999999999999 9998765 88988
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 90
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=117.40 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=63.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEE-EeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~-~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
..+++||||||+.+++++||+++|++||+|+... .-..+|||||+|.+.+||..|++.|+|..+. +|+++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4578999999999999999999999999997322 2358999999999999999999999998765 8888866
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.3e-13 Score=119.82 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=66.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4689999999999999999999999999999999864 3689999999999999999999998765 88888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 92
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=9.9e-13 Score=120.52 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=65.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCce-----------
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS----------- 594 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~----------- 594 (1121)
..+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.++|..|++.|+|..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3578999999999999999999999999999999865 489999999999999999999999876
Q ss_pred -eEEEEecc
Q 001220 595 -WRVKFMDV 602 (1121)
Q Consensus 595 -~RI~F~r~ 602 (1121)
.+|+|+++
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 38888876
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.37 E-value=7.5e-13 Score=119.82 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=66.0
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
..++++||||||+.+++++||+++|++||.|.+|.+. |+||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3578999999999999999999999999999999886 689999999999999999999998764 88888664
No 94
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.6e-13 Score=118.11 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+++++||||||+.+++++||+++|++||+|.++.+... ||||||+|.+.++|..|++.|+|..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 47899999999999999999999999999999998653 899999999999999999999998654
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.8e-13 Score=119.72 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=65.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||+|.++.+... +|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45789999999999999999999999999999998753 799999999999999999999998765 88888
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 66
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.37 E-value=1.1e-12 Score=119.60 Aligned_cols=73 Identities=26% Similarity=0.303 Sum_probs=66.2
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
-..++.||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999998643 799999999999999999999998765 7888
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+++
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 866
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.37 E-value=9.8e-13 Score=120.98 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=66.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999865 3589999999999999999999998765 88888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 98
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=8.2e-13 Score=114.92 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=63.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RV 597 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~f----G-------pLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI 597 (1121)
.++++||||||+.+++++||++.|++| | +|.++++.++||||||+|.+.+||.+|+ .|+|..+. +|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 468999999999999999999999999 8 9999999999999999999999999999 99998765 45
Q ss_pred EEec
Q 001220 598 KFMD 601 (1121)
Q Consensus 598 ~F~r 601 (1121)
++.|
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5443
No 99
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8.1e-13 Score=119.08 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=66.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4689999999999999999999999999999999864 4799999999999999999999998765 89998
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
+.
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 76
No 100
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.1e-12 Score=119.29 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=65.8
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhc------CCcee--
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR------NHFSW-- 595 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~------G~~~~-- 595 (1121)
..++++||||||+.+++++||+++|++||+|.+|.+. ..+|||||+|.+.++|..|++.|+ |..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3568999999999999999999999999999999986 368999999999999999999999 77654
Q ss_pred --EEEEecc
Q 001220 596 --RVKFMDV 602 (1121)
Q Consensus 596 --RI~F~r~ 602 (1121)
+|+++++
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 7787765
No 101
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.9e-12 Score=116.16 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=66.7
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~f--GpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
-+...++++||||||+.+++++||+++|++| |.|.++.+ .||||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3556789999999999999999999999999 88888876 4799999999999999999999998765 78888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 102
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=117.70 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=65.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++|||||+ +++++||+++|++||+|.+|.+-..||||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 46799999997 9999999999999999999999889999999999999999999999998764 78887663
No 103
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=5.4e-13 Score=147.79 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=86.9
Q ss_pred ccCCceEEeccC--CCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEEEEecccCCCC
Q 001220 530 FSASKQLWLGSF--GPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTK 607 (1121)
Q Consensus 530 ~~~S~~LWVGnL--~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~g~r 607 (1121)
-.||++|||||+ +.++||+||+++|++||.|++|++.++||||||+|.+.+||.+|+++|+|+.+ ++ +.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~--~~----~~g-- 86 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV--VD----DLG-- 86 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE--EC----TTS--
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc--cc----ccC--
Confidence 468999999995 67899999999999999999999999999999999999999999999999765 22 111
Q ss_pred ccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHh
Q 001220 608 GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 608 g~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
.+..|||-++.... ..++ .+..+.+-=.+.-+|-+.+|+..-++.++
T Consensus 87 ---------~~~~ly~~~~~~~~-----~~~~---------~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 87 ---------QKITLYLNFVEKVQ-----WKEL---------RPQALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp ---------CEEECEEEECSSEE-----EEEE---------ECCSCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred ---------CceEEEEEEeeccc-----cccc---------ccccCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 23578888775332 1111 12223332334468999999985544444
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.36 E-value=7e-13 Score=122.20 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=63.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4679999999999999999999999999999999864 3899999999999999999999998764 66665
No 105
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.3e-12 Score=116.22 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=66.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999999999999999999999999999999865 5689999999999999999999998765 89988
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.36 E-value=1.4e-12 Score=118.08 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=64.7
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36789999999999999999999999999999999873 5899999999999999999999998765 67665
No 107
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=1.4e-12 Score=127.03 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=63.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCce-EEEEecCHHHHHHHHHhhcCCce----e--EEEEecc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFS----W--RVKFMDV 602 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgf-AFVeF~~i~DAv~A~~~L~G~~~----~--RI~F~r~ 602 (1121)
-.||||||+..+||++|+++|++||+|.+|+++. .||| |||+|.+.+||.+|++.|+|..+ | ||+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3466999999999999999999999999999876 7899 99999999999999999999977 2 8999977
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=8e-13 Score=121.82 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=65.0
Q ss_pred CCceEEeccCCCccCHHHHH---HHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 532 ASKQLWLGSFGPEASEAHIR---FQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~---~~F~~fGpLe~v~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
..++||||||+.+++++||+ ++|++||+|.+|.+.+ +||||||+|.+.+||.+|++.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 9999999999999874 3479999999999999999999998765
Q ss_pred EEEEeccc
Q 001220 596 RVKFMDVG 603 (1121)
Q Consensus 596 RI~F~r~~ 603 (1121)
+|+|+.+.
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 78887664
No 109
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=120.67 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=65.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999864 4799999999999999999999998765 78777
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 55
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.35 E-value=2.5e-12 Score=119.98 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=67.3
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
-..++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999975 5899999999999999999999998664 7888
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 865
No 111
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.34 E-value=1.7e-12 Score=124.75 Aligned_cols=74 Identities=20% Similarity=0.357 Sum_probs=68.1
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.-..+++||||||+.+++++||+++|++||.|++|.+.+ +||||||+|.+.++|..|++.|+|..+. +|+|+++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 345789999999999999999999999999999999987 5999999999999999999999998765 8888866
No 112
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=114.21 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=57.6
Q ss_pred CceEEeccCCCcc------CHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 533 SKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 533 S~~LWVGnL~~~v------te~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
++.||||||+.++ ++++|+++|++||+|.++.+.+ +||||||+|.+.+||.+|++.|+|..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 5789999999999 8899999999999999999863 689999999999999999999999764
No 113
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.34 E-value=6.9e-13 Score=117.40 Aligned_cols=72 Identities=10% Similarity=-0.057 Sum_probs=61.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
+.+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999999766542 6899999999999999999999998765 66665
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 114
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.2e-13 Score=118.66 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=65.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhc-cCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCc-ee----EEEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDR-FGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF-SW----RVKF 599 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~-fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~-~~----RI~F 599 (1121)
.++++||||||+.+++++||+++|++ ||.|.+|.+.. .||||||+|.+.++|..|++.|+|.. +. +|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46899999999999999999999999 99999999875 48999999999999999999999987 54 7777
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+++
T Consensus 87 a~~ 89 (104)
T 2dhg_A 87 AIP 89 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 755
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.4e-12 Score=117.87 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=65.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce---------eEEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS---------WRVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~---------~RI~F~r 601 (1121)
..+++||||||+.+++++||+++|++||+|..+.+... |||||+|.+.+||..|++.|+|+.+ .+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45789999999999999999999999999999999887 9999999999999999999999854 3778876
Q ss_pred cc
Q 001220 602 VG 603 (1121)
Q Consensus 602 ~~ 603 (1121)
+.
T Consensus 92 ~~ 93 (108)
T 1x4c_A 92 PR 93 (108)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 116
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.34 E-value=1.3e-12 Score=131.83 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=64.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCce----e--EEEEeccc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS----W--RVKFMDVG 603 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~----~--RI~F~r~~ 603 (1121)
...||||||+.++||++|+++|++||.|++|+++. .||||||+|.+.+||.+|++.|+|..+ + ||+|+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 35689999999999999999999999999999874 578999999999999999999999977 2 89998773
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.34 E-value=1.6e-12 Score=113.46 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=63.5
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.+++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999864 3899999999999999999 99998765 777776
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=121.97 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=60.9
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
-.++++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|.+.+||.+|++.|+|..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35789999999999999999999999999999999854 5899999999999999999999997654
No 119
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.1e-12 Score=117.83 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=64.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
...++||||||+.+++|+||+++|++||+|++|.+.. .||||||+|.+.++|.+|++.|+| .+. +|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4679999999999999999999999999999999965 468999999999999999999998 443 88988
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 653
No 120
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=118.66 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=60.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCC--cceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc--------eeE
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGP--LEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF--------SWR 596 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGp--Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~--------~~R 596 (1121)
-++||||||++++||++|+++|++||. +.+|++.+ +||||||+|.+.+||.+|++.|+|.. ..+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999996 55888743 68999999999999999999999973 227
Q ss_pred EEEecc
Q 001220 597 VKFMDV 602 (1121)
Q Consensus 597 I~F~r~ 602 (1121)
|+|++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 777754
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.32 E-value=1.7e-12 Score=123.86 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=65.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5689999999999999999999999999999999863 6899999999999999999999998765 77777
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.32 E-value=3.8e-12 Score=123.09 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=69.0
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----R 596 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 596 (1121)
.+...++++||||||+.+++|+||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456889999999999999999999999999999999853 5689999999999999999999998765 8
Q ss_pred EEEeccc
Q 001220 597 VKFMDVG 603 (1121)
Q Consensus 597 I~F~r~~ 603 (1121)
|+|+++.
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 9999764
No 123
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.8e-12 Score=115.99 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=64.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
.++++||||||+.+++++||+++|+.|| |.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4679999999999999999999999999 99999864 3889999999999999999 99998765 8888
Q ss_pred eccc
Q 001220 600 MDVG 603 (1121)
Q Consensus 600 ~r~~ 603 (1121)
+++.
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8774
No 124
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.31 E-value=2.9e-12 Score=113.13 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=64.3
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.+++||||||+.+++|+||++.|++| .|.++.+...||||||+|.+.+||.+|++.|+|..+. +|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 47899999999999999999999999 9999999889999999999999999999999998765 6777644
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.30 E-value=2.9e-12 Score=120.61 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=63.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccC-CcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~v~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
..++||||||+.+++++||++.|++|| .|..+.+. ..||||||+|.+.+||.+|++.|+|..+. +|++++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 467999999999999999999999999 89999985 48999999999999999999999998765 5666543
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3e-12 Score=117.22 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=64.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcc----eEEEe--ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE----HFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe----~v~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||.|+ .+.+. ..||||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4689999999999999999999999999994 44433 37899999999999999999999998765 89998
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=2.9e-12 Score=114.31 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=62.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
...++||||||+.+++++||+++|++||.|..+.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3568999999999999999999999999998655432 5899999999999999999999998765 77776
Q ss_pred c
Q 001220 601 D 601 (1121)
Q Consensus 601 r 601 (1121)
+
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 128
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.30 E-value=1.8e-12 Score=114.91 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=58.2
Q ss_pred ceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fG--pLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.+||||||+.+++++||+++|++|| .|.++++.. .||||||+|.+.+||.+|++.|+|..+. +|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999753 5799999999999999999999998765 666655
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 129
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.29 E-value=2.8e-12 Score=116.35 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=62.9
Q ss_pred CCceEEeccCCC------ccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 532 ASKQLWLGSFGP------EASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~------~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
.++.||||||+. ++++++|+++|++||+|.+|.+. .+||||||+|.+.++|.+|++.|+|..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 99999999999999999999985 26799999999999999999999997543
Q ss_pred -EEEEecc
Q 001220 596 -RVKFMDV 602 (1121)
Q Consensus 596 -RI~F~r~ 602 (1121)
+|+++++
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 6666644
No 130
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=6e-12 Score=119.03 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=65.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++|||||+ +++++||+++|++||+|.+|.+...||||||+|.+.++|..|++.|+|..+. +|+|+++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46899999996 7999999999999999999999899999999999999999999999998765 88888763
No 131
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3e-12 Score=117.61 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=64.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||.|.+|.+. ..||||||+|.+.++|..|+ .|+|..+. +|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999999999999999996 36799999999999999999 99998764 77777
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 55
No 132
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.28 E-value=3.3e-12 Score=118.65 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=64.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.++|..|+ .|+|..+. +|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3899999999999999999 89998765 78888
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
+.
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 66
No 133
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=2.1e-12 Score=113.52 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=61.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.+ |.+|++.|+|..+. +|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999864 4899999999999 99999999998765 7888765
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.28 E-value=9e-12 Score=111.88 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=63.4
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEE-----eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~-----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
--..+++||||||+.+++++||+++|++||.|.+..+ -..||||||+|.+.+||.+|++ |+|..+. +|++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3446899999999999999999999999998877222 2469999999999999999999 9998765 8888
Q ss_pred eccc
Q 001220 600 MDVG 603 (1121)
Q Consensus 600 ~r~~ 603 (1121)
+++.
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8664
No 135
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.4e-12 Score=116.45 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..++||||||+.++|+++|++.|++||+|.+|.+.. .||||||+|.+.++|..|++ |+|..+. +|++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 468999999999999999999999999999999875 68999999999999999999 8887653 55554
No 136
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=7.7e-12 Score=112.96 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=63.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++|| |.+|.+.. .||||||+|.+.+||.+|+ .|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4689999999999999999999999998 99999864 3789999999999999999 89998764 88888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 137
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.27 E-value=4.1e-12 Score=116.03 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=62.3
Q ss_pred cCCceEEeccCCCcc------CHHHHHHHhhccCCcceEEEe----ccCceEEEEecCHHHHHHHHHhhcCCce-----e
Q 001220 531 SASKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFS-----W 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~v------te~dL~~~F~~fGpLe~v~~~----~~rgfAFVeF~~i~DAv~A~~~L~G~~~-----~ 595 (1121)
..+++||||||+.++ ++++|+++|++||+|.+|.+. .+||||||+|.+.++|..|++.|+|..+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 347899999999999 899999999999999999987 3689999999999999999999999754 3
Q ss_pred EEEEec
Q 001220 596 RVKFMD 601 (1121)
Q Consensus 596 RI~F~r 601 (1121)
+|++++
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 555553
No 138
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.27 E-value=8.4e-12 Score=120.17 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=67.4
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
....+++||||||+.+++++||+++|++||.|+++.+.. .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999999999999999854 6799999999999999999999998664 888
Q ss_pred Eeccc
Q 001220 599 FMDVG 603 (1121)
Q Consensus 599 F~r~~ 603 (1121)
|+++.
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 88763
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.27 E-value=4.2e-12 Score=121.11 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=64.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce--------EEE---eccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFF---FPIKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------v~~---~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
.++++||||||+.++|+++|+++|++||.|.+ +.. -..||||||+|.+.++|.+|++.|+|..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 46899999999999999999999999999987 332 248999999999999999999999998765
Q ss_pred EEEEecc
Q 001220 596 RVKFMDV 602 (1121)
Q Consensus 596 RI~F~r~ 602 (1121)
+|+|+++
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 7888866
No 140
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.1e-12 Score=112.57 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=62.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++||||||+.+++++||+++|++||.|.-++.. ..||||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 468999999999999999999999999998433221 26899999999999999999999998764 88888664
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=120.85 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=63.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce--EEEec------cCceEEEEecCHHHHHHHHHhhcCC----cee---
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--FFFFP------IKGFALVEYINIIDAIRAREYIRNH----FSW--- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~----~~~--- 595 (1121)
.++++||||||+.+++|+||+++|++||.|.. |++.. .||||||+|.+. ||.+|++.|+|. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 88753 579999999999 999999999998 553
Q ss_pred -EEEEeccc
Q 001220 596 -RVKFMDVG 603 (1121)
Q Consensus 596 -RI~F~r~~ 603 (1121)
+|+|+++.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 78888763
No 142
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.26 E-value=8.4e-12 Score=115.10 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=59.7
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce----e
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS----W 595 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~----~ 595 (1121)
..|--..+++||||||+.+++|+||+++|++||+|++|.+.+ .||||||+|.+.++|.+|++.| |..+ .
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 455557789999999999999999999999999999999864 4799999999999999999876 3333 2
Q ss_pred EEEEecc
Q 001220 596 RVKFMDV 602 (1121)
Q Consensus 596 RI~F~r~ 602 (1121)
+|+++.+
T Consensus 97 ~V~~a~~ 103 (109)
T 2rs2_A 97 DPKVAFP 103 (109)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 7777755
No 143
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.26 E-value=3e-12 Score=115.72 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=60.9
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 597 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 597 (1121)
.-...++||||||+.+++++||++.|++|| |.+|.+.. .||||||+|.+.++|.+|+ .|+|..+. +|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345689999999999999999999999999 99999864 3799999999999999999 99998764 67
Q ss_pred EEecc
Q 001220 598 KFMDV 602 (1121)
Q Consensus 598 ~F~r~ 602 (1121)
+++++
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 77755
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.26 E-value=9.8e-12 Score=108.61 Aligned_cols=62 Identities=11% Similarity=0.304 Sum_probs=55.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
..+++||||||+.++++++|++.|++||+|.++.+.. .+|||||+|.+.++|.+|++. +|..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~ 76 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR 76 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE
Confidence 4679999999999999999999999999999999864 378999999999999999976 4433
No 145
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.25 E-value=7.1e-12 Score=123.57 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=63.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fG--pLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
...++||||||+.+++|+||+++|++|| .|.+|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999853 5899999999999999999999998765 777
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
++.+
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 7755
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.25 E-value=1e-11 Score=111.17 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=52.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
.+..+||||||+.++||+||++.|++||+|.++.+.. +||||||+|.+.++|.+ |+|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~ 68 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGED 68 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCC
Confidence 4678999999999999999999999999999999876 79999999999999983 56653
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=1.1e-11 Score=118.31 Aligned_cols=70 Identities=24% Similarity=0.390 Sum_probs=63.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 599 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 599 (1121)
.+++||||||+.++|+++|++.|++||.|+++.+.+. +|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 6789999999999999999999999999999999764 899999999999999999999997542 7877
Q ss_pred ec
Q 001220 600 MD 601 (1121)
Q Consensus 600 ~r 601 (1121)
+|
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.25 E-value=7.3e-12 Score=106.61 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=55.1
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+||||||+.+++++||++.|++||+|.++.+.. .||||||+|.+.++|.+|++ |+|..+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 599999999999999999999999999999864 46899999999999999998 8987664
No 149
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=5.1e-12 Score=114.22 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=63.7
Q ss_pred cccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001220 529 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVK 598 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 598 (1121)
--...++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.++|..|++. +|..+. +|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3457899999999999999999999999999999998653 68999999999999999998 887664 566
Q ss_pred Eecc
Q 001220 599 FMDV 602 (1121)
Q Consensus 599 F~r~ 602 (1121)
++.+
T Consensus 91 ~a~~ 94 (105)
T 2dh8_A 91 PCTP 94 (105)
T ss_dssp CSCC
T ss_pred EccC
Confidence 6654
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=7.4e-12 Score=106.57 Aligned_cols=60 Identities=15% Similarity=0.362 Sum_probs=54.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.++|.+|++.|+ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 5799999999999999999999999999999865 37899999999999999999877 443
No 151
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.25 E-value=7.6e-12 Score=119.99 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=66.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999853 5789999999999999999999998775 89988
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
+++
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 773
No 152
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.7e-12 Score=109.63 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=51.1
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHH
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRA 585 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A 585 (1121)
.++++||||||+.+++|+||+++|++||+|.+|.+.. .||||||+|.+.++|.+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 3689999999999999999999999999999999875 799999999999999754
No 153
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=8.8e-12 Score=132.16 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=67.0
Q ss_pred cCCceEEeccCCCcc---------CHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce-------
Q 001220 531 SASKQLWLGSFGPEA---------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS------- 594 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~v---------te~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~------- 594 (1121)
..+++||||||+.++ +|++|+++|++||+|++|.+.+.||||||.|.+.++|..|+++|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 468999999999998 8999999999999999999999999999999999999999999999988
Q ss_pred ---------eEEEEecc
Q 001220 595 ---------WRVKFMDV 602 (1121)
Q Consensus 595 ---------~RI~F~r~ 602 (1121)
.+|+|++.
T Consensus 212 ~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANE 228 (240)
T ss_dssp GGGGGGSCCCEEEECC-
T ss_pred ccccCCCCEEEEEEccC
Confidence 28898855
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=113.84 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=63.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
...++||||||+.+++++||+++|++||.|.+|.+.. .||||||+|.+.++|..|++. +|..+. +|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4579999999999999999999999999999999865 378999999999999999998 776654 77777
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
.+.
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 663
No 155
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.24 E-value=1.2e-11 Score=115.07 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=58.3
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.+++||||||+.+++++||+++|++||+|..+.+... |||||+|.+.+||.+|++.|+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999999999999999877 99999999999999999999998664
No 156
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.23 E-value=1.3e-11 Score=121.11 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.++++++|+.+|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999754 799999999999999999999998765 88888
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
.+
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 66
No 157
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.5e-11 Score=110.84 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=61.4
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHh---hcCCceeEEEEe
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFM 600 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~---L~G~~~~RI~F~ 600 (1121)
..++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++. |+| +.++|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g-~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG-RWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETT-EEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCC-eEEEEEec
Confidence 35689999999999999999999999999999999854 368999999999999999996 333 22377777
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=110.61 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=60.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCc-eEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rg-fAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
+.+++||||||+.+++++||+++|++||+|.+|.+.+..| ||||+|.+.++|.+|++ |+|..+. +|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 3578999999999999999999999999999995544322 99999999999999999 9998765 555553
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.6e-11 Score=113.55 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=63.9
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCc-ceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RV 597 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpL-e~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 597 (1121)
+.-.+.++||||||+.+++|+||+++|+.||.| .+|.+.. .||||||+|.+.+||..|++. +|..+. +|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 445678999999999999999999999999999 8888853 789999999999999999988 887654 56
Q ss_pred EEecc
Q 001220 598 KFMDV 602 (1121)
Q Consensus 598 ~F~r~ 602 (1121)
+++.+
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 66543
No 160
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=109.34 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=61.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeccc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 603 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~---~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 603 (1121)
.++++||||||+.+++++||+++|+.|+.+.-+.-. ..||||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 478999999999999999999999999754443321 25799999999999999999999998765 88888763
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.8e-11 Score=115.38 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
.+++||||||+.++++++|++.|++||.|+++.+.. ++|||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 577999999999999999999999999999999864 4889999999999999999999998765 777764
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=107.55 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=63.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEE-Eec--cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFP--IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~-~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
..+++||||||+.+++++||+++|++||+|.++. +.. ..|.|||+|.+.++|..|++.|+|..+. +|+|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 554 4556999999999999999999998765 8888865
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=114.47 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---------ccCceEEEEecCHHHHHHHHHhh---cCCc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYI---RNHF 593 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~---------~~rgfAFVeF~~i~DAv~A~~~L---~G~~ 593 (1121)
..+++||||||+.+++|+||+++|++||+|. +.+. ..||||||+|.+.++|.+|++.| +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 4579999999999999999999999999999 5543 35899999999999999999999 6654
No 164
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.20 E-value=3.3e-11 Score=118.82 Aligned_cols=76 Identities=28% Similarity=0.397 Sum_probs=69.3
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 600 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 600 (1121)
.+..+++.||||||+.++++++|+++|++|| .|.+|.+.+ .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 115 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 115 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred cCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3456899999999999999999999999999 999999976 9999999999999999999999998664 78888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 165
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-12 Score=120.13 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=65.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 595 (1121)
.++++||||||+.+++++||+++|++||.|.+ |.+.. .||||||+|.+.++|..|++.|+|..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 56899999999999999999999999999998 77653 4799999999999999999999998765
Q ss_pred ---EEEEeccc
Q 001220 596 ---RVKFMDVG 603 (1121)
Q Consensus 596 ---RI~F~r~~ 603 (1121)
+|+++++.
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 78888664
No 166
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=4.1e-11 Score=105.70 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=62.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
...++||||||+.+++++||++.|++| .|.+|.+.. .+|||||+|.+.+||..|++ |+|..+. +|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 357899999999999999999999999 999999864 48899999999999999999 9998765 666665
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
+
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 4
No 167
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4.9e-11 Score=109.33 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=60.4
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
-...++||||||+.++||+||++.|+.||.+ +|.+.. .||||||+|.+.+||.+|++ |+|+.+. +|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4567899999999999999999999999965 888753 58999999999999999995 7888765 56655
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 168
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.19 E-value=1.6e-11 Score=104.18 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=53.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
+||||||+.+++++||++.|++||+|.++.+.. .||||||+|.+.++|.+|++. +|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 589999999999999999999999999999853 589999999999999999995 66544
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.17 E-value=4.3e-11 Score=118.38 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=66.9
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
...+++||||||+.+++++||+++|++||.|+.|.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 356799999999999999999999999999999999764 899999999999999999999998765 8888
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+.+
T Consensus 202 a~~ 204 (216)
T 2qfj_A 202 AVT 204 (216)
T ss_dssp CSS
T ss_pred ecC
Confidence 866
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.17 E-value=4.8e-11 Score=121.84 Aligned_cols=76 Identities=28% Similarity=0.397 Sum_probs=69.5
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 600 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 600 (1121)
++..+++.||||||+.++++++|+++|++|| .|.+|.+.+ .||||||+|.+.+||..|++.|+|..+. +|.|+
T Consensus 146 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp TCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred cCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 4567899999999999999999999999999 999999976 9999999999999999999999998654 88888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
++.
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 763
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.17 E-value=4.6e-11 Score=124.09 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=67.5
Q ss_pred cccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001220 527 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 600 (1121)
Q Consensus 527 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~r-gfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 600 (1121)
+....++++||||||+.+++++||+++|++||.|.+|.+.+.+ |||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 201 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 201 LSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred ccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3445678999999999999999999999999999999999866 99999999999999999999998764 67776
Q ss_pred c
Q 001220 601 D 601 (1121)
Q Consensus 601 r 601 (1121)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 4
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.17 E-value=5.1e-11 Score=112.46 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=59.1
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
.+++||||||+.++++++|+++|++||+|+.+.+.+. +|||||+|.+.++|.+|++.|+|..+.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4688999999999999999999999999999998653 799999999999999999999998653
No 173
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.2e-11 Score=114.05 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=59.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce-EEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~-v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
...++||||||+.+++|+||+++|+.||.|.+ +.+. ..+|||||+|.+.+||..|++ |+|..+. +|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999987 3333 268999999999999999999 9998764 55554
No 174
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.16 E-value=7.1e-11 Score=118.52 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=66.6
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999864 5799999999999999999999998765 88888
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 55
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.16 E-value=1.1e-11 Score=111.52 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=59.0
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHH---hhcCCceeEEEEe
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRARE---YIRNHFSWRVKFM 600 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~---~L~G~~~~RI~F~ 600 (1121)
.+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.++|.+|++ .|+|+.+ +|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l-~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKL-KLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEEC-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEE-EEEEC
Confidence 468999999999999999999999999999999875 57999999999999999999 6666433 44444
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=4.7e-11 Score=114.11 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=62.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
+++||||||+.+++++||++.|++||+|+++.+.+. +|||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 899999999999999999999999999999998764 799999999999999999999998765 55543
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=6e-11 Score=115.84 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=66.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||.|.++.+.+. +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999998764 899999999999999999999998765 78888
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 178
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.13 E-value=7.4e-11 Score=119.23 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=64.7
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
..+++||||||+.+++++||+++|++||.|+.+.+.+ .||||||+|.+.++|..|++.|+|..+. +|+++++
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3567899999999999999999999999999999864 6899999999999999999999998765 6777654
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.13 E-value=1e-10 Score=111.05 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=58.9
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCce
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
++++|||+||+.++++++|+++|++||.|+.+.+.+. +|||||+|.+.+||.+|++.|+|..+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 5689999999999999999999999999999998764 59999999999999999999999865
No 180
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.13 E-value=4.9e-11 Score=124.08 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fG--pLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
..++||||||+.++||+||+++|++|| .|.+|.+.. .||||||+|.+.++|.+|++.|+|+.+. +|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 999999853 5799999999999999999999998764 7777
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 654
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.12 E-value=7e-11 Score=110.55 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=58.2
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp---Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...+.||||||+.++||+||++.|+.||. |.+|++.. .||||||+|.+.+||.+|++ |+|+.+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 45789999999999999999999999999 89998863 58999999999999999999 9997664
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.7e-10 Score=105.20 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=57.4
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcce-EEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~-v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...+.||||||+.+++|+||++.|++||.|.+ |.+. +.||||||+|.+.+||.+|++. +|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 45789999999999999999999999999987 7664 3689999999999999999998 887665
No 183
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.08 E-value=7.6e-11 Score=107.97 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=58.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp---Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...+.||||||+.++|++||++.|+.||. |.+|.+.. .||||||+|.+.+||.+|++ |+|..+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 46789999999999999999999999998 89999853 68999999999999999999 9997654
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.08 E-value=1.6e-10 Score=117.96 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=61.5
Q ss_pred ccccCCceEEeccCCCccCHHHHHHHhhccCCc--ceEEEecc----CceEEEEecCHHHHHHHHHhhcCCce
Q 001220 528 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL--EHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 528 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpL--e~v~~~~~----rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
.+..++++||||||+.++|++||+++|+.||.| .+|.+++. +|||||+|.+.+||..|+..|+|..+
T Consensus 118 ~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 118 RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 356789999999999999999999999999999 89998864 58999999999999999999999754
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.07 E-value=2.7e-10 Score=105.92 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=61.8
Q ss_pred cCCceEEeccCCC-----ccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001220 531 SASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW--- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~-----~vte~dL~~~F~~fGpLe~v~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 595 (1121)
.+|+.|+|+||-. +.+++||+++|++||.|.+|++.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999973 358999999999999999999863 4899999999999999999999998654
Q ss_pred -EEEEecc
Q 001220 596 -RVKFMDV 602 (1121)
Q Consensus 596 -RI~F~r~ 602 (1121)
+++|++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 6777654
No 186
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.07 E-value=1.5e-10 Score=112.62 Aligned_cols=64 Identities=14% Similarity=-0.055 Sum_probs=58.0
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp---Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...++||||||+.++||+||++.|+.||. |++|++.. +||||||+|.+.+||.+|++ |+|+.+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 35789999999999999999999999999 88988863 68999999999999999999 9997654
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.07 E-value=1.4e-10 Score=110.31 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=62.6
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.+++++||++.|++||.|+++.+.. +||||||+|.+.++|.+|++ |+|..+. +|+|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3578999999999999999999999999999999864 46899999999999999998 7876554 77777
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
++
T Consensus 164 ~p 165 (167)
T 2cjk_A 164 EP 165 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.06 E-value=1.9e-10 Score=130.42 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=66.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
.++++||||||+.++|+++|..+|++||.|..|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999999864 4899999999999999999999999775 88888
Q ss_pred cc
Q 001220 601 DV 602 (1121)
Q Consensus 601 r~ 602 (1121)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 65
No 189
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=107.07 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=61.7
Q ss_pred ccCCce-EEeccCCCccCHHH----HHHHhhcc-CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001220 530 FSASKQ-LWLGSFGPEASEAH----IRFQIDRF-GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 599 (1121)
Q Consensus 530 ~~~S~~-LWVGnL~~~vte~d----L~~~F~~f-GpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 599 (1121)
++|+.. ||||||+-++++++ |+++|++| |+|-+|+ .|||||.|.++++|.+|++.|||..+. ||.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 467888 99999999999988 66899999 5999993 399999999999999999999999775 9999
Q ss_pred ecc
Q 001220 600 MDV 602 (1121)
Q Consensus 600 ~r~ 602 (1121)
+..
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 965
No 190
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.04 E-value=3.1e-10 Score=110.66 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=61.5
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 600 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 600 (1121)
..+++||||||+.+++++||+++|++||.|++|.+.. .+|||||+|.+.++|.+|++. +|..+. +|+++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999874 489999999999999999986 566543 78888
Q ss_pred ccc
Q 001220 601 DVG 603 (1121)
Q Consensus 601 r~~ 603 (1121)
.+.
T Consensus 181 ~~k 183 (196)
T 1l3k_A 181 LSK 183 (196)
T ss_dssp C--
T ss_pred CCh
Confidence 663
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=5.2e-10 Score=103.42 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=62.9
Q ss_pred cCCceEEeccCCCcc-----------CHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCcee--
Q 001220 531 SASKQLWLGSFGPEA-----------SEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW-- 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~v-----------te~dL~~~F~~fGpLe~v~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~-- 595 (1121)
++++.|+|.||-... +++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 578999999995443 3789999999999999998853 7999999999999999999999998764
Q ss_pred --EEEEecc
Q 001220 596 --RVKFMDV 602 (1121)
Q Consensus 596 --RI~F~r~ 602 (1121)
+|+|+++
T Consensus 93 ~l~v~~a~~ 101 (112)
T 2dit_A 93 QITAQAWDG 101 (112)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEeCC
Confidence 8888866
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.03 E-value=1.7e-10 Score=111.02 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=62.7
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~-~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.+++||||||+.+++++||+++|++||.|..+... .++|||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 67899999999999999999999999999888211 38999999999999999999999998664 7777755
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.02 E-value=3.9e-10 Score=117.53 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=71.3
Q ss_pred ecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcC-Cc
Q 001220 520 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN-HF 593 (1121)
Q Consensus 520 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G-~~ 593 (1121)
++|-+.-.....++++||||||+.++|+++|+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+| ..
T Consensus 83 i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 83 LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 566666667777899999999999999999999999999999999875 389999999999999999999954 33
Q ss_pred e-------eEEEEecc
Q 001220 594 S-------WRVKFMDV 602 (1121)
Q Consensus 594 ~-------~RI~F~r~ 602 (1121)
+ .+|++++.
T Consensus 163 ~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp ESSSSCCBCEEEECCC
T ss_pred EecCCCceEEEeeccc
Confidence 2 37888765
No 194
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.99 E-value=2.4e-10 Score=111.55 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=59.3
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEec
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 601 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 601 (1121)
...++||||||+.++||+||++.|++|| +.+|.+.. +||||||+|.+.+||.+|+ .|+|..+. +|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4578999999999999999999999999 66888753 6899999999999999999 78887765 454443
Q ss_pred c
Q 001220 602 V 602 (1121)
Q Consensus 602 ~ 602 (1121)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 195
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=7.1e-10 Score=103.85 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=56.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
...+.||||||+.+++|+||++.|+.| .|.+|.+. ++||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 346799999999999999999999999 89999985 36899999999999999999 69997664
No 196
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.97 E-value=9.6e-10 Score=105.85 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=84.5
Q ss_pred ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEecccC------CCCccccceeccccceEEEccCCCcchhHHHHHh
Q 001220 567 PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHE 638 (1121)
Q Consensus 567 ~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~------g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E 638 (1121)
..+|||||+|.+.++|..|++.++|.... .+.+..... ..............+.||||+++..+++|+|..-
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 37899999999999999999998865322 122211100 0000111122346899999999999999999999
Q ss_pred hhcccccCCcee-e---ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 639 SYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 639 ~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|..+|.+..+.+ . ....++.++|+|.+.++|..|++.|+++..+
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 998886655543 2 2456789999999999999999999998765
No 197
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=6e-10 Score=106.64 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=55.0
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCc----ceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPL----EHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpL----e~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
..++||||||+.++||+||++.|+.||+| ++|++. ++||||||+|.+.+||.+|++. +|+.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 46899999999999999999999999986 688875 3689999999999999999996 77544
No 198
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.87 E-value=1.8e-09 Score=109.48 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.3
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcC
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN 591 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G 591 (1121)
.+++||||||+.++++++|++.|++||+|.+|++.+ .||||||+|.+.++|..|++.+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999864 689999999999999999987654
No 199
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.85 E-value=2.9e-09 Score=102.66 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=53.9
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhccCCcc--eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE--HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe--~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
...+.||||||+.++||+||++.|+.| .|. +|.+.. +||||||+|.+.+||.+|++. +|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 457899999999999999999999999 565 888753 689999999999999999985 56544
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.85 E-value=4.2e-09 Score=97.77 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=60.4
Q ss_pred cCCceEEeccCCCc----------cCHHHHHHHhhccCCcceEEEec--------cCceEEEEecCHHHHHHHHHhhcCC
Q 001220 531 SASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNH 592 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~----------vte~dL~~~F~~fGpLe~v~~~~--------~rgfAFVeF~~i~DAv~A~~~L~G~ 592 (1121)
+||+-|-|-|+-.. ..++||+++|++||+|.+|++.+ ++|||||+|.+.++|.+|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46888888887432 24579999999999999999864 4799999999999999999999998
Q ss_pred cee----EEEEecc
Q 001220 593 FSW----RVKFMDV 602 (1121)
Q Consensus 593 ~~~----RI~F~r~ 602 (1121)
.+. ++.|.+.
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 664 7887765
No 201
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.83 E-value=2e-09 Score=103.51 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=86.5
Q ss_pred ccCceEEEEecCHHHHHHHHHhh-cCCce---eEEEEecccCC-------CCccccceeccccceEEEccCCCcchhHHH
Q 001220 567 PIKGFALVEYINIIDAIRAREYI-RNHFS---WRVKFMDVGLG-------TKGVINGVAVGSCFHVYVGNIPNQWAKDEI 635 (1121)
Q Consensus 567 ~~rgfAFVeF~~i~DAv~A~~~L-~G~~~---~RI~F~r~~~g-------~rg~~~Gv~~~~s~~LwVG~iss~~~keEL 635 (1121)
.-+|+++|+|.+.++|.+|++.| +|..+ ++++++..... .............+.||||+++..+++++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 35899999999999999999999 66544 46666543100 000011222347899999999999999999
Q ss_pred HHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 636 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 636 f~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..-|..+|.+..+.+.- ..++.++|||.+.++|..|++.|+++..+
T Consensus 91 ~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVAR-NPPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp HHHHHHHSCEEEEEECS-SSCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred HHHHHhhCCEEEEEEee-CCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 99999887665543321 25899999999999999999999997754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.1e-08 Score=94.84 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred CccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCC--ceeEEEEeccc
Q 001220 543 PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH--FSWRVKFMDVG 603 (1121)
Q Consensus 543 ~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~--~~~RI~F~r~~ 603 (1121)
++++|+||+++|++||.|.+|++.. .||||||+|.+.+||..|++.++|. ...+|+|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCC
Confidence 6799999999999999999999974 9999999999999999999998874 33489988664
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.79 E-value=8.7e-09 Score=98.11 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=60.8
Q ss_pred cCCceEEeccCCCc-----cCHHHHHHHhhccCCcceEEEecc----------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPE-----ASEAHIRFQIDRFGPLEHFFFFPI----------KGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~-----vte~dL~~~F~~fGpLe~v~~~~~----------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
++|+.|.|.|+-.. -.++||+++|++||+|.+|++.++ +|||||+|.+.++|.+|++.|+|+...
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 47999999998532 347999999999999999998652 489999999999999999999998654
Q ss_pred ----EEEEecc
Q 001220 596 ----RVKFMDV 602 (1121)
Q Consensus 596 ----RI~F~r~ 602 (1121)
+++|.+.
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 6777654
No 204
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.74 E-value=3.8e-09 Score=97.75 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=50.9
Q ss_pred eccCCCccCHHHHHHHh------------hccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 538 LGSFGPEASEAHIRFQI------------DRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 538 VGnL~~~vte~dL~~~F------------~~fGpLe~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+++|+.++++++|++.| ++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 67888888888887776 9999999999975 4899999999999999999999998654
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.71 E-value=3.4e-08 Score=93.65 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=58.8
Q ss_pred CCceEEeccCCCc----------cCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001220 532 ASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW---- 595 (1121)
Q Consensus 532 ~S~~LWVGnL~~~----------vte~dL~~~F~~fGpLe~v~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 595 (1121)
+|+-|-+-|+-.. -.++||+++|++||.|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5666777766443 24678999999999999999976 5899999999999999999999998654
Q ss_pred EEEEecc
Q 001220 596 RVKFMDV 602 (1121)
Q Consensus 596 RI~F~r~ 602 (1121)
+++|.+.
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 7777755
No 206
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.3e-08 Score=100.21 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=57.6
Q ss_pred ceEEeccC----CCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecC----HHH----HHHHHH--hhcCCc
Q 001220 534 KQLWLGSF----GPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYIN----IID----AIRARE--YIRNHF 593 (1121)
Q Consensus 534 ~~LWVGnL----~~~vte~dL~~~F~~fGpLe~v~~~------~~rgfAFVeF~~----i~D----Av~A~~--~L~G~~ 593 (1121)
.+|||||| +..++|.+|+..|+.||+|.++.+. ++||||||+|.| +.+ |..|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999984 489999999997 544 788888 788877
Q ss_pred ee----EEEEecc
Q 001220 594 SW----RVKFMDV 602 (1121)
Q Consensus 594 ~~----RI~F~r~ 602 (1121)
+. ||++-|-
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 64 6665554
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=3e-07 Score=88.94 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=58.8
Q ss_pred cccCCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEeccCceEEEEecC-HHHHHHHHHhhc
Q 001220 529 IFSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYIN-IIDAIRAREYIR 590 (1121)
Q Consensus 529 v~~~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~-i~DAv~A~~~L~ 590 (1121)
.+.+.+-|+||||+.+ ++++||+++|+.||+|..|.+.+++.+|||.|.+ ..+|.+|++.|+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 3578899999999999 9999999999999999999999999999999999 899999999995
No 208
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.37 E-value=1.9e-07 Score=89.51 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=58.4
Q ss_pred eEEEEecCHHHHHHHHHhhcCCcee-E--EEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001220 571 FALVEYINIIDAIRAREYIRNHFSW-R--VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 647 (1121)
Q Consensus 571 fAFVeF~~i~DAv~A~~~L~G~~~~-R--I~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgp 647 (1121)
++|.+|.|..=|..|+..|+|.... + +.+.++ .-...+++.|||||++..+++++|..-|..++.+..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp -----------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 4566666666666666777665322 1 111111 111237889999999999999999999999887666
Q ss_pred ceee----ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 648 YMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 648 v~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.+. ....++.++|||++.++|..|++.|+++...
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5442 2345779999999999999999999987755
No 209
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.22 E-value=8.2e-07 Score=87.05 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=55.6
Q ss_pred EEecCHHHHHHHHHhhcCCcee------EEEEeccc-CCCCccc----------cceeccccceEEEccCCCcchhHHHH
Q 001220 574 VEYINIIDAIRAREYIRNHFSW------RVKFMDVG-LGTKGVI----------NGVAVGSCFHVYVGNIPNQWAKDEIL 636 (1121)
Q Consensus 574 VeF~~i~DAv~A~~~L~G~~~~------RI~F~r~~-~g~rg~~----------~Gv~~~~s~~LwVG~iss~~~keELf 636 (1121)
++|++.+||.+|+..|+++... +.+...+. .+....+ ......+++.|||||++..++.++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7999999999999999997654 22221110 0000000 11112367789999999999999999
Q ss_pred HhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 637 HESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 637 ~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.-|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 999998866655442 2 234689999999999999999999997654
No 210
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.17 E-value=3.1e-07 Score=104.31 Aligned_cols=129 Identities=9% Similarity=0.043 Sum_probs=89.4
Q ss_pred HHHHHhhccCCcceEEEe--------ccCceE-----EEEecCHHHHHHHHHhhcCCcee-----------------EEE
Q 001220 549 HIRFQIDRFGPLEHFFFF--------PIKGFA-----LVEYINIIDAIRAREYIRNHFSW-----------------RVK 598 (1121)
Q Consensus 549 dL~~~F~~fGpLe~v~~~--------~~rgfA-----FVeF~~i~DAv~A~~~L~G~~~~-----------------RI~ 598 (1121)
+|.++|..+|||..+... ...+|+ |++|.+..+|..++..+...... .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999887211 123455 89998877766555433322110 122
Q ss_pred EecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHHH
Q 001220 599 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMA 674 (1121)
Q Consensus 599 F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~ 674 (1121)
...+.... .....+++.|||||++..++.++|...|..+|.+..+.+. ....++.+||+|.+.++|..|++
T Consensus 88 ~~~p~~~~-----~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 88 MWDPHNDP-----NAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred hcCCcccc-----cccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 22221000 1112467899999999999999999999999877766442 23457899999999999999999
Q ss_pred HHhhhccc
Q 001220 675 HLRQHRKS 682 (1121)
Q Consensus 675 ~l~~~r~~ 682 (1121)
.|+++.++
T Consensus 163 ~lng~~i~ 170 (437)
T 3pgw_S 163 HADGKKID 170 (437)
T ss_pred HcCCCEEC
Confidence 99997765
No 211
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=3.1e-06 Score=75.46 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=56.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+ ...++.++|||++.++|..|++.|+++...
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH--VKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE--CSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE--eCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 458899999999999999999999988876655433 345889999999999999999999987654
No 212
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.09 E-value=2.4e-06 Score=73.82 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=57.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.|||||++..+++++|...+..+|.+..+.+ .+ ...++.++|||++.++|..|++.|+++..+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457899999999999999999999999886665543 22 345788999999999999999999998754
No 213
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=4.2e-06 Score=73.73 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=59.3
Q ss_pred ccceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 610 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 610 ~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.+-...+++.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34444568899999999999999999999999886666544 22 345679999999999999999999987654
No 214
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.04 E-value=5.2e-06 Score=84.43 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=51.0
Q ss_pred cCHHHHHHHhhccCCcceEEEe----------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 545 ASEAHIRFQIDRFGPLEHFFFF----------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 545 vte~dL~~~F~~fGpLe~v~~~----------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
-.++||.++|++||.|.+|.+. +.+||+||+|.+.++|.+|++.|+|+... ++.|.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3678999999999999999996 57899999999999999999999998654 6777643
No 215
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=5e-06 Score=73.20 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+. ++.++|||++.++|..|++.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 3478999999999999999999999998866665554 899999999999999999999997654
No 216
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=6.4e-06 Score=76.41 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=54.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.+++.|||||++..+++++|...|..+|.+..+.+ ...|+.+||||++.++|..|++.|+++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MPFKRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE--ECCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 48999999999999999999999999887666443 3469999999999999999999998753
No 217
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.01 E-value=5.2e-06 Score=73.90 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=56.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|++.|||||++..+++++|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999998866655442 2 344789999999999999999999998765
No 218
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=7.5e-06 Score=73.26 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=56.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+ ..+++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~--~~~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI--HKDKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE--ETTTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE--ecCCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 47899999999999999999999999887665443 466899999999999999999999987755
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=1.1e-05 Score=70.02 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=56.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..++.++|..-+..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 36899999999999999999999988876655543 22 344789999999999999999999998765
No 220
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=6.4e-06 Score=72.79 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=57.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc-ee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv-~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+ .+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999998877665 44 22 345789999999999999999999997765
No 221
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.1e-05 Score=73.49 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=57.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++|+|..-|..++.+..+.+ .+-..++.++|||++.|+|..|++.|+++...
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 347899999999999999999999999887766644 33445789999999999999999999987655
No 222
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=7.8e-06 Score=73.24 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.|||||++..+++|+|..-|..+|.+..+.+. ..++.++|||++.++|..|++.|+++..+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999998876665443 67999999999999999999999987755
No 223
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=7.2e-06 Score=73.41 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=58.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..++.++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 348899999999999999999999999887777644 22 346789999999999999999999997765
No 224
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=9.2e-06 Score=72.58 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=57.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...++.||||+++..+++++|..-|..++.+. +.+.....++.++|||++.+||..|++.|+++...
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34689999999999999999999999988775 44444477899999999999999999999998754
No 225
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=6.6e-06 Score=73.28 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=56.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+. ....++.++|||++.++|..|++.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999998866555442 2345689999999999999999999997765
No 226
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.96 E-value=6e-06 Score=74.54 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=54.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..++.++|..-|..++.+..+.+. ++.++|||++.|+|..|++.|+++...
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 3478999999999999999999999888766554432 679999999999999999999997665
No 227
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.96 E-value=6.8e-06 Score=76.86 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.+++.|||||++..++++||..-+..+|.+..+. -+..|+.++|||++.++|.+|++.|++.-
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~--i~~~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVV--VMPKKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEE--EEcCCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 4899999999999999999999998887665543 34679999999999999999999999863
No 228
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=7.3e-06 Score=76.30 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=54.7
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 616 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 616 ~~s~~LwVG~iss-~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.+++.|||||++. .++++||..-|..+|.+..+.+ +.+++.+||||++.+||..|+++|+++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI--LNKINEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE--CSSSSCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE--EcCCCEEEEEECCHHHHHHHHHHHcCCC
Confidence 3899999999999 9999999998888877666443 4678999999999999999999999753
No 229
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.94 E-value=8.6e-06 Score=75.15 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=57.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.|||||++..+++++|...|..+|.+..+.+. ++.++|||++.++|..|++.|+++..+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3478999999999999999999999998877766555 899999999999999999999998764
No 230
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=7.3e-06 Score=74.87 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=57.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccC----CceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKG----PYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kg----pv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..++.|+|..-|..++.+. .+.......++.++|||++.++|..|++.|+++...
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3789999999999999999999999888763 333345667899999999999999999999997764
No 231
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.93 E-value=6.1e-06 Score=71.54 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=55.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..+++++|..-|..+|.+..+.+ .+ ...++.++|||.+.++|..|++.|+++..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46889999999999999999999999887666544 22 334679999999999999999999987654
No 232
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.93 E-value=9e-06 Score=74.44 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=58.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..++.++|...|..+|.+..+.+ .+...++.++|||.+.++|..|++.|+++..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46899999999999999999999999887766644 45666889999999999999999999998764
No 233
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=1e-05 Score=72.39 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=55.3
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss-~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++. .+++++|..-|..+|.+..+.+. ++.++|||++.++|..|++.|+++...
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 4789999999998 99999999999998877766553 899999999999999999999987654
No 234
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=1.2e-05 Score=70.93 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999998866665442 2 334679999999999999999999997765
No 235
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=1.6e-05 Score=71.43 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=56.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D-l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..++.++|..-|..++.+..+.+. + -..++.++|+|++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4588999999999999999999999988866655442 2 224789999999999999999999987765
No 236
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=9.8e-06 Score=71.31 Aligned_cols=68 Identities=10% Similarity=-0.014 Sum_probs=57.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3489999999999999999999999998876665442 2 344678999999999999999999987754
No 237
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=71.29 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+. ++.++|||++.++|..|++.|+++...
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3478999999999999999999999998876665443 569999999999999999999998765
No 238
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=73.60 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=55.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..++.++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 37899999999999999999999999886655533 22 233678999999999999999999997765
No 239
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.1e-05 Score=71.15 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=54.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccc-cCCceeeccCCCccccccccCHHHHHHHHHHHhh-hccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ-HRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~-kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~-~r~~ 682 (1121)
.+++.||||+++..+++|+|...|..++. +..+.+ ..++.++|||++.++|..|++.|++ +...
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 47899999999999999999999999886 444443 4589999999999999999999998 5544
No 240
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=7.4e-06 Score=72.98 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=57.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC-Ccee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kg-pv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+. .+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 44789999999999999999999999988766 5544 22 234578999999999999999999997765
No 241
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.89 E-value=9e-06 Score=70.43 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=55.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ecc----CCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~Dl----~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.|||||++..++.++|...|..+|.+..+.+ .+- ..++.++|||++.++|..|++.|+++..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 3678999999999999999999999886665543 222 26889999999999999999999997765
No 242
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=9.7e-06 Score=74.97 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=53.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhh
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
..+++.|||||++..+++++|..-|..+|.+..+.+ ..+++.+||||++.++|..|+++|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM--LKGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--ECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 348999999999999999999999988887665433 45699999999999999999998875
No 243
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=1.2e-05 Score=72.05 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=55.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++|+|..-|..++.+.-+.......++.++|||++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34799999999999999999999988876542111123456889999999999999999999987755
No 244
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.89 E-value=1e-05 Score=70.95 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=57.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+.- ...++.++|||++.++|..|++.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34789999999999999999999999988666654432 335689999999999999999999997765
No 245
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.88 E-value=1.2e-05 Score=72.71 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=55.1
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss-~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++. .+++++|..-|..+|.+..+.+ .++.++|||++.++|..|++.|+++..+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4799999999998 9999999999998876665554 3899999999999999999999987653
No 246
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=8.6e-06 Score=73.19 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D-l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 378999999999999999999999998866665443 2 345779999999999999999999998765
No 247
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.87 E-value=2.1e-05 Score=70.40 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=53.6
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.||||+++..+++++|..-|..++.+..+.+..- .++.++|||++.++|..|++.|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 47999999999999999999999887666544211 6899999999999999999999997655
No 248
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=2.2e-05 Score=71.67 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=56.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC--------Ccee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG--------PYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kg--------pv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...++.|||||++..+++++|..-|..++.+. .+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999988766 3433 22 344779999999999999999999997765
No 249
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=9.8e-06 Score=71.31 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=54.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..++.++|..-|..++.+..+.+. ++.++|||++.++|..|++.|+++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999988766554443 569999999999999999999997755
No 250
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=1.8e-05 Score=71.13 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec-cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D-l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..++.||||+++..++.++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 47899999999999999999999998886665544 22 235789999999999999999999997765
No 251
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=6.9e-06 Score=78.47 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=56.3
Q ss_pred cccceEEE--ccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 616 GSCFHVYV--GNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 616 ~~s~~LwV--G~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
.++++||| ||++..+++|+|...|..+|.+..+.+ ..+++.++|||++.|||..|++.||++..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 37899999 889999999999999999887665433 35689999999999999999999999865
No 252
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.9e-05 Score=70.69 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=57.2
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347899999999999999999999999887766544 22 235679999999999999999999997754
No 253
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=1.1e-05 Score=76.54 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=55.5
Q ss_pred cccceEEEccCCCc-chhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 616 GSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 616 ~~s~~LwVG~iss~-~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
.+++.|||||++.. ++++||...|..+|.+..+.+ +..++.+||||++.++|..|+++|++..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL--MRMKSQAFIEMETREDAMAMVDHCLKKA 86 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE--ecCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 37999999999998 999999999999887777655 4679999999999999999999998743
No 254
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.85 E-value=1.4e-05 Score=70.53 Aligned_cols=68 Identities=22% Similarity=0.161 Sum_probs=55.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..++++||..-|..++.+..+.+ .+ ...++.++|||++.+||..|++.|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 336799999999999999999999999887665533 32 234678999999999999999999998764
No 255
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.85 E-value=1.6e-05 Score=71.70 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=57.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|+|++.++|..|++.|+++..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 347899999999999999999999999887666644 22 34678999999999999999999999763
No 256
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.2e-05 Score=76.99 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=54.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
.+++.||||+++..+++++|..-|..+|.+..+.+ +.+++.+||||++.++|..|++.|++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i--~~~kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LKGKNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE--EGGGTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhccC
Confidence 47999999999999999999999999887777544 345899999999999999999999864
No 257
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.84 E-value=9.9e-06 Score=73.82 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=54.6
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...|||||++..++.|+|..-|..+|.+..+.+ .| ...++.++|||++.+||..|++.|+++..+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457999999999999999999999886666544 22 345678999999999999999999998765
No 258
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.2e-05 Score=72.34 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=56.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||.+.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 378999999999999999999999988866665442 2 334568999999999999999999997765
No 259
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.84 E-value=1.5e-05 Score=74.05 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=56.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..++.++|...|..++.+..+.+. ....++.++|||.+.++|..|++.|+++...
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368899999999999999999999998866555442 2344889999999999999999999997765
No 260
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.84 E-value=1.4e-05 Score=68.63 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=54.2
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+..|||||++..++.++|...+..+|.+..+.+. + ...++.++|+|++.++|..|++.|+++..+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 4689999999999999999999998866655442 2 334788999999999999999999987754
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.83 E-value=1.6e-05 Score=74.57 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=57.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.+.|||||++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++..+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 348999999999999999999999999886665544 22 446889999999999999999999987654
No 262
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.6e-05 Score=71.58 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=56.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+++.|||||++..++.++|..-|..+|.+..+.+ .+ ...++.++|||.+.++|..|++.|+++..+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 6788999999999999999999999887666644 23 344789999999999999999999997754
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=1.5e-05 Score=73.70 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=55.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.|||||++..++.++|..-|..+|.+..+.+ ...++.++|||++.++|..|++.|+++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--PEGGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--CSSSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--eCCCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 6789999999999999999999998876655433 457899999999999999999999998755
No 264
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.3e-05 Score=71.69 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=53.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcc--cccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~ka--g~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..++.++|..-|..+ +.+..+.+ .++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 478999999999999999999999998 44333222 3789999999999999999999997765
No 265
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.83 E-value=9.3e-06 Score=70.31 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=53.2
Q ss_pred cceEEEccCCCcc------hhHHHHHhhhcccccCCceee--ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~------~keELf~E~~kag~kgpv~f~--Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
++.|||||++... ++++|...|..+|.+..+.+. ....++.++|||++.++|..|++.|+++...
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 4789999999988 679999999888866555443 2345789999999999999999999987654
No 266
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.83 E-value=8.5e-06 Score=72.15 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=54.4
Q ss_pred cccceEEEccCCCcchhHHHH----HhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf----~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..++.++|. .-+..+|.+..+.+ .....++.++|||++.++|..|++.|+++..+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 378999999999999999988 77777665544433 22356789999999999999999999997754
No 267
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=8.9e-06 Score=72.91 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=56.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..+++++|..-|..+|.+..+.+. + ...++.++|||.+.++|..|++.|+++..+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 468999999999999999999999998877666442 2 334789999999999999999999987765
No 268
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.6e-05 Score=71.04 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=56.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999998866665442 2 234588999999999999999999987755
No 269
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=72.45 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=56.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||.+.|+|..|++.|+++...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 478999999999999999999999998866655442 2 345789999999999999999999997765
No 270
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=1.8e-05 Score=70.67 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=56.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++ |+++...
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 347899999999999999999999999886666544 22 3457899999999999999999 9887655
No 271
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.82 E-value=1.7e-05 Score=72.10 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..++.++|..-|..+|.+..+.+ .+ ...++.++|||.+.++|..|++.|+++..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 36889999999999999999999999886665544 22 344789999999999999999999997754
No 272
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=8.2e-06 Score=72.55 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-cc------CCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-Dl------~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. +- ..++.++|||.+.++|..|++.|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999998876665443 21 34679999999999999999999987765
No 273
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.82 E-value=1.2e-05 Score=74.62 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=54.5
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ec-cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D-l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+..|||||++..+++|+|..-|..+|.+..+.+ .+ -..++.++|||++.|+|..|++.|+++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 567999999999999999999999887666544 22 224678999999999999999999998765
No 274
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.82 E-value=1.2e-05 Score=73.55 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=56.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||.+.++|..|++.|+++..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999998876665442 2 334679999999999999999999987765
No 275
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=1.3e-05 Score=73.70 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=57.0
Q ss_pred eeccccceEEEccCCCcchhHHHH---HhhhcccccCCceee-cc------CCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 613 VAVGSCFHVYVGNIPNQWAKDEIL---HESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 613 v~~~~s~~LwVG~iss~~~keELf---~E~~kag~kgpv~f~-Dl------~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.+...+.|||||++..+++|+|. ..|..++.+..+.+. +- ..++.++|||++.|||..|++.|+++...
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345578999999999999999999 888888766665442 21 23469999999999999999999998765
No 276
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2.1e-05 Score=70.76 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=56.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+ . ....++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 47899999999999999999999999886655533 2 2345679999999999999999999987655
No 277
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.81 E-value=1.5e-05 Score=71.66 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 468999999999999999999999998876665442 2 23368999999999999999999998764
No 278
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.81 E-value=2.1e-05 Score=70.34 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=56.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--------cee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgp--------v~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.+.|||||++..+++++|..-|..+|.+.. +.+ .+ ...++.++|||++.++|..|++.|+++..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 36899999999999999999999999887665 433 22 344679999999999999999999998654
No 279
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.81 E-value=1.6e-05 Score=72.95 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=56.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.+.||||+++..+++|+|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 67899999999999999999999998877766442 2 334568999999999999999999997765
No 280
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.80 E-value=2.1e-05 Score=69.22 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=54.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.|||||++..+++++|..-+..+ .+..+.+ + ..++.++|||++.++|..|++.|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-D-RNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-E-GGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-e-CCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999887 5555444 2 77899999999999999999999998755
No 281
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=1.7e-05 Score=71.33 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-----ccCCCccccccccCHHHHHHHHHHH-hhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-----DLSCEGALLMEFRTPEEATTAMAHL-RQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-----Dl~ek~~LpVEF~t~edA~~A~~~l-~~~r~~ 682 (1121)
.+++.||||+++..++.++|..-|..++.+..+.+. ....++.++|||++.++|..|++.| +++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 478999999999999999999999998866554331 2334789999999999999999999 776654
No 282
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.80 E-value=1.3e-05 Score=77.87 Aligned_cols=107 Identities=9% Similarity=0.074 Sum_probs=57.4
Q ss_pred CceEEEEecCHHHHHHHHHhhcCCceeEEEEecccCCCCccccceeccccceEEEccCCCcchhHHHHHhhhcccc---c
Q 001220 569 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---K 645 (1121)
Q Consensus 569 rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~g~rg~~~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~---k 645 (1121)
+||.|-+|..++.++-....+....-. .+-|.-+.+.+-.....+.|||||++..+++|+|..-|..++. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg------~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v 74 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGG------QQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGA 74 (136)
T ss_dssp ----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSS
T ss_pred CccccccccchHHHHhhccCCCcccCC------CCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCce
Confidence 367888899888888887776653211 0001111122222347889999999999999999999999887 4
Q ss_pred CCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 646 GPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 646 gpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.+ .+ ...++.++|||++.+||..|++ |+++..+
T Consensus 75 ~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 75 AGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred eEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 55544 33 4457799999999999999999 9987765
No 283
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.80 E-value=1.6e-05 Score=72.65 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred ccceEEEccCCCc-chhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~-~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.||||+++.. +++++|..-|..++.+..+.+ .++.++|||++.++|..|++.|+++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5689999999999 999999999999887766655 6899999999999999999999997765
No 284
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.79 E-value=2.2e-05 Score=71.74 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=56.7
Q ss_pred cceeccccceEEEccCCCcchhHHHHHhhhcccccCCcee---ec---cCCCccccccccCHHHHHHHHHHHhhhc
Q 001220 611 NGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 680 (1121)
Q Consensus 611 ~Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f---~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r 680 (1121)
|+-....-+.|||||++..+++|+|...|..+|.+....+ .| ...++.++|||.+.|+|..|++.||++.
T Consensus 2 g~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 2 GHHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CcccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 3334556788999999999999999999999886443323 23 4567899999999999999999999863
No 285
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.79 E-value=1.9e-05 Score=69.71 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=56.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347899999999999999999999999886666544 22 234678999999999999999999987754
No 286
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.79 E-value=1.6e-05 Score=68.97 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=54.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcc----cccC----Cc-eeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKV----VYKG----PY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~ka----g~kg----pv-~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.|||||++..++.++|..-|..+ +... ++ .+.-..+++.++|||++.++|..|+ .|+++...
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 3478999999999999999999998887 4110 33 3444567999999999999999999 99987654
No 287
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.77 E-value=1.8e-05 Score=70.85 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=51.0
Q ss_pred cceEEEccCCCcchhHHHHHhhhccc-ccCCcee-ec---cCCCccccccccCHHHHHHHHHHHh
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~kag-~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
|+.|||+|++..+++|||...|..+| .+..+.+ .| ...++.++|||.+.|||..||+.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 68999999999999999999999988 5555543 22 5678899999999999999998774
No 288
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=2.2e-05 Score=70.27 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=54.4
Q ss_pred cccceEEEccCCCcchhHHHH----HhhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf----~E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.|||||++..+++++|. .-|..+|.+..+.+ .+-..++.++|||++.++|..|++.|+++..+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357899999999999999998 77777776555543 23222889999999999999999999998655
No 289
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.76 E-value=1.9e-05 Score=71.31 Aligned_cols=68 Identities=16% Similarity=0.042 Sum_probs=56.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3478999999999999999999999998876655442 2 344678999999999999999999997754
No 290
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=1.4e-05 Score=69.06 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=54.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHH-hhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL-RQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l-~~~r~~ 682 (1121)
..++.|||||++..+++++|..-+..+|.+..+.+ ..+++.++|+|++.++|..|++.| +++...
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~--~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV--VQRQQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE--EGGGTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE--ECCCCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 47899999999999999999999988876555433 346899999999999999999998 765543
No 291
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=2.5e-05 Score=71.40 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=52.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..++.||||+++..++.++|..-|..++.+..+.+ ..+ +.++|||++.+||..|++.|+++..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i--~~~-g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV--YRD-GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE--ETT-TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE--ecC-CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 46899999999999999999999988776555433 122 8999999999999999999998654
No 292
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=3.3e-05 Score=70.98 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=58.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D-l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...++.|||||++..+++|+|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4578999999999999999999999999877776552 2 235889999999999999999999987654
No 293
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=2.1e-05 Score=71.69 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=54.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.||||+++..+++++|..-|..+|.+..+. -..+++.++|+|++.++|..|++.|+++..+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~--i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR--VFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 678999999999999999999998877655443 3445899999999999999999999997665
No 294
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.75 E-value=1.7e-05 Score=70.23 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=56.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++.+.-+ -.....++.++|||++.++|..|++.|+++..+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999887755443 233456789999999999999999999987654
No 295
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=2e-05 Score=71.34 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=53.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
.+++.||||+++..++.|+|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 478999999999999999999999998866555442 2 3468899999999999999999998
No 296
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=2.1e-05 Score=74.08 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=53.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
.+++.|||||++..+++++|..-|..+|.+..+.+ +.+|+.+||||++.+||..|++.|++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i--~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--EcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 37899999999999999999999988887666544 34699999999999999999999875
No 297
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=73.48 Aligned_cols=67 Identities=9% Similarity=-0.048 Sum_probs=57.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.+.||||+++..+++++|...|.++|.+..+.+ .| ...++.++|+|++.|+|..|++.||++...
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 47899999999999999999999999887777644 33 445789999999999999999999997655
No 298
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=1.7e-05 Score=71.80 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=52.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccc-cCCceee--c---cCCCccccccccCHHHHHHHHHHHh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVT--D---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~-kgpv~f~--D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
.+++.|||||++..+++|+|...|..++. +..+.+. + ...++.++|||++.++|..|++.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 36889999999999999999999998875 5554443 1 2568899999999999999999996
No 299
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.7e-05 Score=71.93 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeec------cCCCccccccccCHHHHHHHHHHH
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD------LSCEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~D------l~ek~~LpVEF~t~edA~~A~~~l 676 (1121)
..++.||||+++..+++|+|..-|..+|.+....+.+ ...++.++|||++.++|..|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4689999999999999999999999988666222222 355889999999999999999998
No 300
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=6.1e-05 Score=70.05 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 548 AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 548 ~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.+|...|..||.|..+++..++ +||+|++.+.|.+|++ |+|..++ +|+.+.+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 7899999999999999998876 8999999999999999 9999886 6666655
No 301
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.71 E-value=1.7e-05 Score=72.98 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=56.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+++.|||||++..+++|+|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 67999999999999999999999998866665442 2 345789999999999999999999987654
No 302
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.70 E-value=4.8e-05 Score=70.80 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=57.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.|||||++..+++++|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4578999999999999999999999998876665442 2 346789999999999999999999998754
No 303
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=5.3e-05 Score=67.33 Aligned_cols=68 Identities=22% Similarity=0.160 Sum_probs=56.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
....+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++..+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346789999999999999999999999887665433 33 234688999999999999999999987654
No 304
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.69 E-value=2.3e-05 Score=70.12 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=54.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee---eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f---~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.+.|||||++..+++++|..-|..++.+....+ .....++.++|||++.++|..|++ |+++...
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 36889999999999999999988888874433222 335678999999999999999999 9998765
No 305
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.69 E-value=3.7e-05 Score=71.62 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=56.5
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee---ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.|||||++..+++++|..-|..+|.+..+.+. ....++.++|||++.++|..|++.|+++..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57899999999999999999999998877665442 2345689999999999999999999987765
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3.9e-05 Score=67.95 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=52.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCce-eeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~-f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.|||||++..++.++|..-|..+|.+..+. +..-...+.++|||++.++|..|++.|+++..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999998887665542 221122233999999999999999999998765
No 307
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.67 E-value=2.8e-05 Score=71.56 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..++.++|..-|..+|.+..+.+. + ...++.++|||.+.++|..|++.|+++..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 478999999999999999999999998866665442 2 334679999999999999999999997754
No 308
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.67 E-value=3.2e-05 Score=73.68 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=57.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 488999999999999999999999998877666442 2 356789999999999999999999997754
No 309
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=2.6e-05 Score=70.02 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=56.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhc-ccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhc-cc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHR-KS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~k-ag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r-~~ 682 (1121)
.+++.|||||++..++.++|..-|.. ++.+..+.+ .+ ...++.++|||++.++|..|++.|+++. .+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 47899999999999999999999998 886665543 22 3357789999999999999999999977 44
No 310
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.66 E-value=3.5e-05 Score=69.77 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=56.5
Q ss_pred cccceEEEccCCC------cchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPN------QWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss------~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.++.|||||++. .+++++|..-|..+|.+..+.+ .+ ...++.++|+|++.++|..|++.|+++...
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4688999999999 9999999999999886665543 23 456789999999999999999999997754
No 311
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.66 E-value=2.5e-05 Score=73.71 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=56.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..++.||||+++..+++|+|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 47899999999999999999999999887766644 22 234778999999999999999999997765
No 312
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.65 E-value=3.6e-05 Score=72.45 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=56.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhccc-ccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag-~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.|||||++..++.++|..-|..+| .+..+.+..-..++.++|||++.|||..|++.|+++..+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3578999999999999999999998887 555544432357899999999999999999999997654
No 313
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.65 E-value=3.3e-05 Score=71.77 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=51.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.++.|||||++..+++++|..-|..++.+..+.+ ..+ +.++|||++.+||..|++.|+++...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i--~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV--YRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE--CTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--ecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5789999999999999999999988775544433 222 89999999999999999999997654
No 314
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.61 E-value=3.9e-05 Score=67.81 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=51.7
Q ss_pred ceEEEccCCCcchhHHHHHhhhccc--ccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag--~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..|||||++..+++++|..-|..+| ....+.+ .+ ...++.++|||.+.++|..|++.|+++...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3699999999999999999999988 6666544 22 345678999999999999999999997654
No 315
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=3.7e-05 Score=70.63 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=55.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.+.||||+++..+++|+|...|..++.+..+.+ .+ ...++.++|||++.++|..|++.|++.-.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 458899999999999999999999999886655544 22 335679999999999999999999874333
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=4.5e-05 Score=67.74 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=53.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..++.||||+++..++.++|..-|..++.+..+ +.+-.....++|||.+.++|..|++ |+++..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 467899999999999999999999988866654 3332222289999999999999999 9987765
No 317
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.60 E-value=3.4e-05 Score=67.09 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=55.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.|||||++..+++++|...|..+|.+..+.+. ....++.++|||++.++|..|+ .|+++...
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 57899999999999999999999998876665442 2345789999999999999999 89987755
No 318
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=4.5e-05 Score=68.77 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=54.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec----cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D----l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..++ +..+.+ .+ ...++.++|||++.++|..|+ .|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 34789999999999999999999999987 555433 22 344789999999999999999 99987655
No 319
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=69.65 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=52.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.||||+++..+++++|..-|..+. .+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34789999999999999999998888653 2322 22 233579999999999999999999998765
No 320
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.60 E-value=3.3e-05 Score=70.38 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcc------hhHHHHHhhhcccccCCceee--ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~------~keELf~E~~kag~kgpv~f~--Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.++.|||||++..+ ++++|..-|..+|.+..+.+. ....++.++|||++.++|..|++.|+++..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 357899999999988 778999888888766555443 2355789999999999999999999987654
No 321
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=6.1e-05 Score=68.84 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|+|.+.++|..|++.|+++...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 47899999999999999999999999886666544 22 334678999999999999999999998764
No 322
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=3.8e-05 Score=70.32 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..++.|||||++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|+ .|+++..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 368899999999999999999999998866665442 2 346789999999999999999 99987754
No 323
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.57 E-value=4e-05 Score=69.13 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=52.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-----ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-----Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.|||||++..+++++|..-|..+| +..+.+. ....++.++|||++.++|..|+ .|+++..+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 4689999999999999999999999988 6555442 2335789999999999999999 89987754
No 324
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.54 E-value=5.1e-05 Score=64.30 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=50.7
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceee----ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 620 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 620 ~LwVG~iss~~~keELf~E~~kag~kgpv~f~----Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.|||||++..+++++|..-+..+|.+..+.+. ....++.++|||++.++|..|++ |+++..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 48999999999999999999998866665442 24457899999999999999987 7776543
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.54 E-value=5e-05 Score=72.35 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=57.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc------e---eeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------M---VTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv------~---f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|||||++..++.++|..-|..+|.+..+ . ......++.++|+|.+.++|..|++.|+++...
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 478999999999999999999999998866553 1 134677899999999999999999999997765
No 326
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.53 E-value=6.4e-05 Score=72.22 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=51.0
Q ss_pred cccceEEEccCCCcchhHHHHH----hhhcccccCCcee-eccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILH----ESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~----E~~kag~kgpv~f-~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..++.++|.. -|..+|.+..+.+ .....++.+||+|++.++|..|++.|+++...
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 4789999999999998887543 3344443333322 33567899999999999999999999997654
No 327
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.53 E-value=7e-05 Score=69.98 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=56.2
Q ss_pred ceeccccceEEEccCCCcchhHHHHHhhhcccc---cCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 612 GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---KGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 612 Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~---kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+-.....+.||||+++..+++|||..-|..++. +..+.+ .+ ...++.++|||++.+||..|++ |+++.++
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 333457889999999999999999999999887 344433 22 4457799999999999999999 9887765
No 328
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.53 E-value=5.6e-05 Score=72.98 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 37899999999999999999999999887666644 22 234579999999999999999999987655
No 329
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=6.8e-05 Score=63.50 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=50.9
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHh
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
+.|||||++..+++++|..-+..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 469999999999999999999999877776552 2 3457899999999999999999888
No 330
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=7.7e-05 Score=68.76 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=54.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
...+.|||||++..++.|+|..-|..+|.+..+.+. + ...++.++|||++.|+|..|++ ++++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY 76 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE
Confidence 467999999999999999999999998876666442 2 4578999999999999999998 776543
No 331
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.49 E-value=4.8e-05 Score=84.72 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=56.0
Q ss_pred ccccceEEEcc--CCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 615 VGSCFHVYVGN--IPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 615 ~~~s~~LwVG~--iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..++++||||| ++..+++|+|...|.++|.+..+.+ ...|+.+||||++.|||..|++.||++..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~--~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC--CTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34999999998 5678999999999999887765433 35799999999999999999999999875
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.48 E-value=3.5e-05 Score=75.25 Aligned_cols=106 Identities=14% Similarity=0.050 Sum_probs=51.8
Q ss_pred CceEEEEecCHHHHHHHHHhhcCCceeEEEEecccCCCCccccc--eeccccceEEEccCCCcchhHHHHHhhhcccccC
Q 001220 569 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 646 (1121)
Q Consensus 569 rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~g~rg~~~G--v~~~~s~~LwVG~iss~~~keELf~E~~kag~kg 646 (1121)
.||||-+|+-..-++.|++.+....-. .+.|..+.-.+ ......+.||||+++..+++|||..-|..++ ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg------~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~ 73 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGG------QQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PV 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CS
T ss_pred CCcccccccCccccchhcccchhccCC------CCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce
Confidence 378899999999888888777653211 11111111111 1223678999999999999999999999988 33
Q ss_pred Ccee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 647 PYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 647 pv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.+ .+ ...++.++|||++.|||..|+ .|+++..+
T Consensus 74 ~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 74 RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 4333 22 445779999999999999999 67776655
No 333
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.45 E-value=0.00027 Score=66.76 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=54.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--cee-e---ccCCCccccccccCHHHHHHHHHHHhhh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--YMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgp--v~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
.+++.|||||++..+++|+|...|..+|.+.. +.+ . ....++.+||||++. ||..|++.|+++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 47899999999999999999999999987755 433 2 245689999999999 999999999997
No 334
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.44 E-value=7e-05 Score=73.85 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=54.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccc--ccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag--~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.|||||++..+++|+|..-|..+| .+..+.+ .| ...++.++|||++.++|..|++.|+++..+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 568999999999999999999999988 6666544 23 445779999999999999999999987755
No 335
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.43 E-value=4.9e-05 Score=70.45 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=55.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~---Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.||||+++..+++|+|..-|..+|.+..+.+ . ....++.++|||++.++|..|+ .|+++..+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 6899999999999999999999999887666644 2 2455789999999999999999 79987765
No 336
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=6.7e-05 Score=67.62 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=55.6
Q ss_pred eccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 614 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 614 ~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.....+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++. +++...
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 3458899999999999999999999999886666544 22 23457899999999999999998 876655
No 337
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.42 E-value=0.0001 Score=66.22 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=50.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHH
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
..+.+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.++|..|++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 347899999999999999999999999886665544 22 34467899999999999999996
No 338
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.42 E-value=7.4e-05 Score=68.77 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=50.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHh
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
.+.+.|||||++..+++++|..-|..+|.+..+.+ .+ ...++.++|+|++.++|..|++.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 36899999999999999999999999887766644 22 4557899999999999999998775
No 339
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.41 E-value=0.00015 Score=66.22 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=54.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccc---cCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVY---KGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~---kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
....+.|||||++..+++|+|..-|..++. +..+.+ .+ ...++.++|||.+.+||..|++ |+++.++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 457889999999999999999999998776 444433 22 4567899999999999999999 8887765
No 340
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.41 E-value=0.00013 Score=67.60 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=54.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.|.-|||||++.++++++|..=|..+|.+..+. -...++.+||||.+.+||..|++.||+...+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~--l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~ 69 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFH--PYLNQGIALCKYTTREEANKAQMALNNCVLA 69 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEE--EcCCCcEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 588999999999999998888777766555533 3458999999999999999999999997765
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.40 E-value=0.00015 Score=72.79 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=57.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++.|||||++..+++++|..-|..++.+..+.+. + ...++.++|+|++.+||..|++.|+++...
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4578999999999999999999999998877665442 2 445789999999999999999999987654
No 342
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.00023 Score=66.67 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=52.5
Q ss_pred cCCceEEeccCCCc-----cCH----HHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001220 531 SASKQLWLGSFGPE-----ASE----AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~-----vte----~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 595 (1121)
+|.-++.|-.++++ ... .+|.+.|..||.+..|+|..++ +||+|++-++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45667778777643 222 6799999999999999999988 9999999999999999 9999886
No 343
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.00012 Score=65.43 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=53.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+. .+++++|..-|..++.+..+.+ ...++.++|+|++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe--cCCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 37889999995 7899999999988886665544 467899999999999999999999997654
No 344
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=64.69 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=53.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.|||||++..+++++|..-|..+ .+..+.+ .+ ...++.++|||++.+||..|++ |+++..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 468899999999999999999999887 5544433 33 3346789999999999999999 9987765
No 345
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.39 E-value=9.6e-05 Score=66.52 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=53.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.+.||||+++..+++++|..-|..++ +..+.+ .+ ...++.++|||++.++|..|+ .|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 34889999999999999999999998874 444333 22 234569999999999999999 89987665
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.38 E-value=0.00012 Score=74.22 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=55.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
....|||||++..+++|+|..-|.++|.+..+.+..-..++.+||||++.+||..|++.|+++.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45668999999999999999999998877776554333456899999999999999999999875
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.38 E-value=0.00013 Score=71.19 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=52.5
Q ss_pred cceeccccceEE--EccCCCcchhHHHHHhhhcccccCCceeeccCCCcc-ccccccCHHHHHHHHHHHhhhcc
Q 001220 611 NGVAVGSCFHVY--VGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 611 ~Gv~~~~s~~Lw--VG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~-LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
+|....+++.|+ |||++-.++.|+|..-|..+|.+..+.+.. ..++. ++|||++.+||..||+.|+++..
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 445555666555 999999999999998888888776664433 33566 99999999999999999999775
No 348
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.38 E-value=0.00011 Score=78.10 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcc---------hhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 616 GSCFHVYVGNIPNQW---------AKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~---------~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
..++.||||+++..+ ++++|...|..+|.+..+.+ +..++.+||+|.+.++|..|++.|+++..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v--~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY--VESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE--EGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE--ECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 478999999999988 78999999998887776544 35799999999999999999999999886
No 349
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.35 E-value=7.9e-05 Score=64.80 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=50.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHH
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHL 676 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l 676 (1121)
.+.+.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|++.++|..|++.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 478999999999999999999999988866665442 2 344678999999999999999763
No 350
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.35 E-value=6.5e-05 Score=65.76 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=53.2
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-c---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.|||||++..+++++|..-|..+|.+..+.+. + ...++.++|||++.+ |..|++.|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 579999999999999999999988876666442 2 445789999999999 99999999987755
No 351
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.34 E-value=9.6e-05 Score=69.06 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc-eeec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv-~f~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.|||||++..+++++|..-|..++.+..+ .+.+ ...++.++|||++.+||..|++ |+++..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 467899999999999999999999998877653 3332 3457799999999999999999 9887655
No 352
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.00023 Score=65.69 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=54.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhccccc-CCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~k-gpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+.+.||||+++..+++++|..-|..++.+ ..+.+ .+ ...++.++|||++.|+|..|++. +++..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 478899999999999999999999998877 55543 22 45688999999999999999877 765544
No 353
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00016 Score=66.46 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|+|++.++|..|++. +++..+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 94 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID 94 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC
Confidence 6799999999999999999999999887766644 22 34578999999999999999987 665544
No 354
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.38 E-value=3.8e-05 Score=70.67 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=55.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCC--------cee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgp--------v~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+++.|||||++..+++++|..-|..++.+.. +.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 6889999999999999999999988886654 322 22 345789999999999999999999997765
No 355
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.28 E-value=0.00024 Score=68.54 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=51.4
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCcc-ccccccCHHHHHHHHHHHhhhcc
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~-LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
.+||||+++-.+++|+|..-|..+|.+..+.+.. .++. ++|||++.+||..||+.|+++.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4468999999999999999999988777765533 2464 99999999999999999999875
No 356
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00025 Score=64.48 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=53.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC-cee-e--ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV-T--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgp-v~f-~--Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
...+.||||+++..+++++|..-|..++.+.. +.+ . ....++.++|||++.+||..|++. +++.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 46899999999999999999999998886544 322 2 345678999999999999999987 665544
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.23 E-value=0.00038 Score=65.75 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=54.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.||||+. .+++++|..-|..+|.+..+.+ ...++.++|+|++.++|..|++.|+++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 37899999995 5999999999999888777655 378999999999999999999999997754
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.19 E-value=5.5e-05 Score=67.80 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=53.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHH---HHhhhccc
Q 001220 616 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMA---HLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~---~l~~~r~~ 682 (1121)
..++.||||+++..+++++|..-|..+|.+..+.+ .+ ...++.++|||++.++|..|++ .|++++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEE
Confidence 36899999999999999999999998886655533 22 3356899999999999999999 66665543
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.00038 Score=60.88 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=46.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHH
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTA 672 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A 672 (1121)
.++.||||+++..+++|+|..-|..++.+..+.+. ...++.++|||++.++|..|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-SSCCSCCEEECSCHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-cCCCCEEEEEECCHHHHHHH
Confidence 58999999999999999999999988876665442 13689999999999999643
No 360
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.11 E-value=0.00022 Score=60.25 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=46.9
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccCHHHHHHHHHH
Q 001220 620 HVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAH 675 (1121)
Q Consensus 620 ~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~ 675 (1121)
.|||||++..+++++|..-+..+|....+.+ .+ ...++.++|||++.++|..|++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 4899999999999999999999886665543 22 45688999999999999999884
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.00096 Score=61.49 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=56.5
Q ss_pred cccceEEEccCCCcc-----------hhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQW-----------AKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~~-----------~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|+|.++-... .+|+|..+|.++|.+..+.+.+-..++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 489999999995443 2578999999999888776666668999999999999999999999997654
No 362
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.03 E-value=0.0005 Score=61.30 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=45.3
Q ss_pred ceeccccceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHH
Q 001220 612 GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEAT 670 (1121)
Q Consensus 612 Gv~~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~ 670 (1121)
+.+..+...||||+++..+++|+|...|..+|.+..+.+.- ..++.++|||++.++|.
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHH
Confidence 34456889999999999999999999999988766654432 37899999999999997
No 363
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.01 E-value=0.00019 Score=74.71 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=53.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccc--ccCCcee-ec---cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag--~kgpv~f-~D---l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.||||+++..+++++|..-|..++ .+..+.+ .| ...++.+||||++.++|..|++.|+++.+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 567899999999999999999999988 6666544 22 345678999999999999999999987643
No 364
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=96.92 E-value=0.00014 Score=79.38 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 001220 347 SRYKKLCN 354 (1121)
Q Consensus 347 ~~ykklc~ 354 (1121)
-||-.+|.
T Consensus 132 dRy~aI~~ 139 (448)
T 2z73_A 132 DRYNVIGR 139 (448)
T ss_dssp HHHHHTTS
T ss_pred HHHHhccc
Confidence 34444443
No 365
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.91 E-value=0.00051 Score=62.82 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=52.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 615 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 615 ~~~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
....+.||||+++..+++|||..-|..++.. .+.+ .+ ...++.++|||++.|||..|++ ++++.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 3478899999999999999999999888733 3322 22 3346689999999999999995 6776655
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.00091 Score=62.81 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=46.6
Q ss_pred ccce-EEEccCCCcchhHHHHHhhhc-ccccC-CceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFH-VYVGNIPNQWAKDEILHESYK-VVYKG-PYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~-LwVG~iss~~~keELf~E~~k-ag~kg-pv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+|.. |||+|++-.+.+|+|...++. |...| . +.++.. +.++|+|.+.|+|.+|++.|+++-..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~--Vl~Vtg-G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK--VLSITG-CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC--EEECCT-TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe--eEEEec-CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 6777 999999999998875544432 11221 2 333333 99999999999999999999997654
No 367
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.84 E-value=0.00051 Score=66.25 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=47.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccC--Ccee-e--ccCCCccccccccCHHHHHHHHHHHh
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKG--PYMV-T--DLSCEGALLMEFRTPEEATTAMAHLR 677 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kg--pv~f-~--Dl~ek~~LpVEF~t~edA~~A~~~l~ 677 (1121)
..+.|||||++..+++|+|..-|..++ +. .+.+ . +...++.++|||++.|||..|++..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC
Confidence 578899999999999999998888873 22 3322 1 24568899999999999999998543
No 368
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.001 Score=62.24 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=51.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--ccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f-~--Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.|||||++..+++++|..-|..+ .+..+.+ . +...++.++|||.+.|||..|+ .|+++.++
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 56899999999999999999999887 4444433 2 2456889999999999999999 68877665
No 369
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.79 E-value=0.0014 Score=60.80 Aligned_cols=67 Identities=18% Similarity=0.055 Sum_probs=55.1
Q ss_pred cccceEEEccCCCc-----chhHHHHHhhhcccccCCceee-c----cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 616 GSCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 616 ~~s~~LwVG~iss~-----~~keELf~E~~kag~kgpv~f~-D----l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.+++.|+|.|+-.. -.+|+|..|+.++|.+..+.+. + ...++.++|+|.+.++|..|++.|+++..+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 48999999999742 3678999999999987777553 2 245889999999999999999999998754
No 370
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.52 E-value=0.0015 Score=62.50 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=51.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccccc----CCcee-ec--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYK----GPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~k----gpv~f-~D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.|||||++-..++|+|..-|..++.+ ..+.+ .+ ...++.++|||++.|||..|++. +++.++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 56899999999999999999999988754 34433 33 44568999999999999999986 666554
No 371
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.52 E-value=0.001 Score=67.49 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=53.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~~~keELf~E~~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+.|||||++..++.|+|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.+++.-.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 57899999999999999999999998866665442 2 446789999999999999999877654333
No 372
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.19 E-value=0.0081 Score=57.20 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=58.6
Q ss_pred CceEEeccCCCccC-----HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEecc
Q 001220 533 SKQLWLGSFGPEAS-----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 602 (1121)
Q Consensus 533 S~~LWVGnL~~~vt-----e~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 602 (1121)
.++|.|-||..+|- ++.+|++|..|+++-+|-.+++=.=..|.|.+.++|++|+..|+|.... |+.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 46789999987763 3678999999999999988875556799999999999999999998654 7777753
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.91 E-value=0.011 Score=56.12 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=53.1
Q ss_pred eeccccceEEEccCCCc----------chhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 613 VAVGSCFHVYVGNIPNQ----------WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 613 v~~~~s~~LwVG~iss~----------~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+.-.+++.|.+-|+=.. -.+|+|..|+.++|.+..+.+..-..++.++|+|.+.++|..|++.|||+..+
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 33456777777776542 24568888888888777665533345899999999999999999999998755
No 374
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.62 E-value=0.032 Score=51.76 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=53.9
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC--------ceEEEEecCHHHHHHHHHhhcCCc
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK--------GFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~r--------gfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
.+|-|-+|+|+.||+++.++++.++.++-+.+.+++ +-|||.|.+.+|+.+=.+.++|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 478899999999999999999999998888775433 689999999999999999999985
No 375
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.35 E-value=0.018 Score=53.34 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=52.2
Q ss_pred cccceEEEccCCCc--c--------hhHHHHHhhhcccccCCcee-ecc-----CCCccccccccCHHHHHHHHHHHhhh
Q 001220 616 GSCFHVYVGNIPNQ--W--------AKDEILHESYKVVYKGPYMV-TDL-----SCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 616 ~~s~~LwVG~iss~--~--------~keELf~E~~kag~kgpv~f-~Dl-----~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
.|++.|.+-|+-.. . .+|+|..|+.++|.+..+.+ .+- ..++.++|+|.+.++|..|++.||++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999987442 2 34789999999887766644 222 35789999999999999999999998
Q ss_pred ccc
Q 001220 680 RKS 682 (1121)
Q Consensus 680 r~~ 682 (1121)
..+
T Consensus 83 ~f~ 85 (105)
T 3v4m_A 83 KFA 85 (105)
T ss_dssp EET
T ss_pred EeC
Confidence 754
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=95.26 E-value=0.015 Score=55.38 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=52.0
Q ss_pred ccceEEEccCCCc-----chhHHHHHhhhcccccCCcee-eccC-------CCccccccccCHHHHHHHHHHHhhhccc
Q 001220 617 SCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMV-TDLS-------CEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 617 ~s~~LwVG~iss~-----~~keELf~E~~kag~kgpv~f-~Dl~-------ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
+++.|++.|+-.. -.+|||..|+.++|.+..+.+ .+-. .++.++|+|.+.|+|..|++.|+++..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 7999999998543 247899999999887776644 3321 2478999999999999999999997654
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.11 Score=50.45 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=57.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhcc-----CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRF-----GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~f-----GpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
.+.|=+=+|+.-++++.|+.+.+.| |+|..+...++-+=|+|+|+|..+|-.|.=+|+|..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCee
Confidence 3567777999999999999999999 999999999999999999999999999999999964
No 378
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=93.80 E-value=0.034 Score=51.29 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=36.9
Q ss_pred HHHHHhh-hcccccCCceee-c--cCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 633 DEILHES-YKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 633 eELf~E~-~kag~kgpv~f~-D--l~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
|+|..|+ .++|.+..+.+. + ...++.++|+|.+.++|..|++.||++..+
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3444555 777766655442 2 235789999999999999999999997654
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.73 E-value=0.065 Score=51.94 Aligned_cols=62 Identities=6% Similarity=-0.051 Sum_probs=50.3
Q ss_pred eeccccceEEEccCCCc-chhHHHHHhhhcccccCCceeec-cCCCccccccccC-HHHHHHHHHHHh
Q 001220 613 VAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRT-PEEATTAMAHLR 677 (1121)
Q Consensus 613 v~~~~s~~LwVG~iss~-~~keELf~E~~kag~kgpv~f~D-l~ek~~LpVEF~t-~edA~~A~~~l~ 677 (1121)
+.....+.|||||++.. .++|+|...|..++ ++.+++ ..++...+|+|.+ .++|..|++.|+
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G---~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHG---EIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSC---CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcC---CEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 34457899999999999 99999888888754 554544 5566689999999 899999999885
No 380
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.37 E-value=0.031 Score=64.80 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=42.8
Q ss_pred ccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCc-eEEEEecCHHHHHHH
Q 001220 530 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRA 585 (1121)
Q Consensus 530 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rg-fAFVeF~~i~DAv~A 585 (1121)
.++.|.++|. .++..++.+|.+.|.+||+|.++.+|..+| ||.|||.+.+.|..+
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHH
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHH
Confidence 3568999996 799999999999999999999999998555 999999997766654
No 381
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.51 E-value=0.098 Score=48.44 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=41.5
Q ss_pred CcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhh
Q 001220 628 NQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 679 (1121)
Q Consensus 628 s~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~ 679 (1121)
..+++++|..-|..+|.+..+.+. ...++.++|||++.++|..|++.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~~ 77 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVGL 77 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCCC
Confidence 347889998888888877666555 367899999999999999999986553
No 382
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.22 E-value=0.48 Score=55.47 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccceeee
Q 001220 54 EIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVAL 133 (1121)
Q Consensus 54 e~r~v~~~y~~~k~~~~~~~~~~~~~leq~y~~li~~s~gc~svqri~a~liprya~~cptaleaa~kv~i~m~~~~~a~ 133 (1121)
-|..+|++|.||-..= | -..+=|.+|..+|.++.|=..++|+.|.+||||..+=|.--|.|.-..+|.-
T Consensus 6 ~ie~LY~~~~~L~da~---d--k~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLc------ 74 (507)
T 3u0r_A 6 TVEELYRNYGILADAT---E--QVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLC------ 74 (507)
T ss_dssp CHHHHHHHHHHHHHTG---G--GGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHH------
T ss_pred hHHHHHHHhhHhhhcc---c--cccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH------
Confidence 3789999999996541 1 2244578899999999999999999999999999999999999988777753
Q ss_pred eccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHH
Q 001220 134 INRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEV 213 (1121)
Q Consensus 134 ~~rged~~gva~~ta~aci~gl~dic~~a~s~~~~s~v~~gics~v~~~vl~ff~~~f~gkdi~~~~~~~~~~~qd~~e~ 213 (1121)
-+||.+ .-+.-|-||.+||.. +. ...+
T Consensus 75 --EDed~~-----IR~qaik~Lp~~ck~---~~-------------------------------------------i~ki 101 (507)
T 3u0r_A 75 --EDEDVS-----IRRQAIKELPQFATG---EN-------------------------------------------LPRV 101 (507)
T ss_dssp --TCSSHH-----HHHHHHHHGGGGCCT---TC-------------------------------------------HHHH
T ss_pred --hcccHH-----HHHHHHHhhHHHhhh---hh-------------------------------------------hhhH
Confidence 234433 345568889999954 11 1234
Q ss_pred HHhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCcccccccc
Q 001220 214 FLGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNPSVLEGIH 268 (1121)
Q Consensus 214 ~~~lk~~~~~~~~~~~~~l~~~~~l~ll~if~~~p~~~l~acf~l~~s~~~e~~~ 268 (1121)
-++|-|-+.-|+..-+.-. --||+.+|-..||+.|.+=|..+.+.+ |.+.
T Consensus 102 aDvL~QlLqtdd~~E~~~V----~~sL~sllk~Dpk~tl~~lf~~i~~~~-e~~R 151 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLV----NNALLSIFKMDAKGTLGGLFSQILQGE-DIVR 151 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHSC-HHHH
T ss_pred HHHHHHHHhccchHHHHHH----HHHHHHHHhcChHHHHHHHHHHHcccc-hHHH
Confidence 4555555554444333322 247888888999999999998888864 4333
No 383
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.70 E-value=0.56 Score=45.65 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=51.4
Q ss_pred eeecCCccccccccCCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001220 518 WYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 594 (1121)
Q Consensus 518 ~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 594 (1121)
.|-.|++...+-.-..+-|-|=..++.. .+.|..+|++||.|.........++-.|.|.+..+|.+|+.. +|+.+
T Consensus 9 f~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 9 FYTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp ------------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred ceeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 3456777666655555556666666664 678889999999999999866899999999999999999987 77543
No 384
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=89.43 E-value=0.14 Score=50.91 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=50.1
Q ss_pred ceEEEccC----CCcchhHHHHHhhhcccccCCcee-ec---cCCCccccccccC----HHH----HHHHHH--HHhhhc
Q 001220 619 FHVYVGNI----PNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRT----PEE----ATTAMA--HLRQHR 680 (1121)
Q Consensus 619 ~~LwVG~i----ss~~~keELf~E~~kag~kgpv~f-~D---l~ek~~LpVEF~t----~ed----A~~A~~--~l~~~r 680 (1121)
+.||||++ +..++.++|-.=|..+|.+..+.+ .| ...++..+|||.. +++ |..|++ .|++++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 999999999999999987777743 55 4558999999996 655 667766 677777
Q ss_pred cc
Q 001220 681 KS 682 (1121)
Q Consensus 681 ~~ 682 (1121)
.+
T Consensus 83 I~ 84 (136)
T 2j8a_A 83 IM 84 (136)
T ss_dssp ET
T ss_pred ec
Confidence 66
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.94 E-value=1.1 Score=42.81 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred cCCceEEeccCCCccCHHHHHHHhhc-c----CCcceEEEeccCceEEEEecCHHHHHHHHHh----hcCCcee
Q 001220 531 SASKQLWLGSFGPEASEAHIRFQIDR-F----GPLEHFFFFPIKGFALVEYINIIDAIRAREY----IRNHFSW 595 (1121)
Q Consensus 531 ~~S~~LWVGnL~~~vte~dL~~~F~~-f----GpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~----L~G~~~~ 595 (1121)
+..+.+-|-||++++.++.|+--|+. - |++++|...+ +-|+|.|.+..+|..-++- |+|..+-
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 35688999999999999999999998 2 8999999887 9999999999999877665 7776544
No 386
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.93 E-value=0.43 Score=44.98 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=50.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 533 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 533 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~--------~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
|-+|-|-.|+|+.||+++.++++..=+++-+.+.+ --+-|||.|.+.+|..+-.+..+|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 56899999999999999999988776655444432 23678999999999999999999975
No 387
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=87.08 E-value=0.31 Score=49.39 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=42.3
Q ss_pred chhHHHHHhhhcccccCCceee-cc-------CCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 630 WAKDEILHESYKVVYKGPYMVT-DL-------SCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 630 ~~keELf~E~~kag~kgpv~f~-Dl-------~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
..+++|..|+.++|....+.+. +. ..++..+|||.+.++|..|++.|+++-.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 4678899999998877766552 21 34578999999999999999999997643
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=86.49 E-value=0.55 Score=44.66 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=45.8
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCc
Q 001220 535 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 593 (1121)
Q Consensus 535 ~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~ 593 (1121)
-|+| +.++.---.||+.+|+.|| .|.+.= +-.-|||-|.+.+.|..|+..|.-..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHTTCS
T ss_pred EEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCC
Confidence 4566 9999999999999999999 555432 56889999999999999999885333
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=85.58 E-value=2.1 Score=40.69 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEEE
Q 001220 534 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 598 (1121)
Q Consensus 534 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~ 598 (1121)
.-|+| ..++.--..||+.+|+.||-+.==|+ +-.-|||-|.+.+.|..|+..|.=...++|+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 33555 99999999999999999996665555 4578999999999999999988644444443
No 390
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.49 E-value=0.19 Score=66.19 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.6
Q ss_pred ceeeeecC
Q 001220 515 QIVWYFDE 522 (1121)
Q Consensus 515 ~~~~~~~g 522 (1121)
+||.|+||
T Consensus 868 ~ivQF~YG 875 (1752)
T 3h0g_A 868 DIIQFAYG 875 (1752)
T ss_dssp CEEESSSS
T ss_pred cEEEEecC
Confidence 34444444
No 391
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.13 E-value=0.27 Score=64.82 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=14.5
Q ss_pred eeeccCCCCcchhhhhhhhhh----ccccccccccc
Q 001220 132 ALINRGEDADGVAFQTASACI----FGLGDICRTAS 163 (1121)
Q Consensus 132 a~~~rged~~gva~~ta~aci----~gl~dic~~a~ 163 (1121)
-+|..||-..|+-- |.=+ .||++.|.--.
T Consensus 611 v~i~~gell~g~l~---K~~lg~~~~~li~~i~~~~ 643 (1752)
T 3h0g_A 611 MLIENGEIIYGVVD---KKTVGASQGGLVHTIWKEK 643 (1752)
T ss_dssp EEECBSCEEEECCS---HHHHSSCTTCHHHHSSSSS
T ss_pred EEEEcCeEEecccc---hHHhccCcccHHHHHHHHH
Confidence 35556666665532 2222 46666665443
No 392
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=81.89 E-value=0.47 Score=54.69 Aligned_cols=111 Identities=11% Similarity=0.169 Sum_probs=66.6
Q ss_pred eeecccccCCccceeEEeecccccccccccCCCCCCCCcccccCCc--cccccccccccccCCCCcccccc---------
Q 001220 975 QWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTK--RTDFRHVKSTFTSTPPNKREVCR--------- 1043 (1121)
Q Consensus 975 ~WqG~l~kSganyCtIl~s~lds~IC~Ai~a~sepS~Wps~eD~t~--RtDfq~Le~TFSstPpkKREV~R--------- 1043 (1121)
+|++...|++.||-.|.... +++.++|....+-.. ..+|..|+++|+......+....
T Consensus 3 ~~~P~~~mK~l~W~ki~~~~-----------~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~ 71 (457)
T 3obv_E 3 VYKPEVQLRRPNWSKFVAED-----------LSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKS 71 (457)
T ss_dssp CCCCSSCBCCCCCCEECTTT-----------TCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC------------------
T ss_pred CCCCCCCCcCCCceeCCccc-----------cCCCceeeeCccccccChhHHHHHHHHhccccccccccccccccccccc
Confidence 58899999999999887665 568899995444332 23378899999976432111100
Q ss_pred -----cccCCCCCCcchhcHHHHHhhcCc------cceeeccc--h-hhHHHHhhhccCCchhhhcc
Q 001220 1044 -----LVPSSPGDHKGFQDFVSYLKQREC------AGVIKIPA--V-KSIWARLMFILPYSQDICSM 1096 (1121)
Q Consensus 1044 -----LvPas~~D~k~fqDFisyLkqkd~------AGViKips--~-k~~w~rlL~LlP~SeEvcs~ 1096 (1121)
.-.-+.=|.|.-|...+.|+.... ..+..++. . ......|+.++|..||+...
T Consensus 72 ~~~kk~~~v~lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l 138 (457)
T 3obv_E 72 VQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 138 (457)
T ss_dssp -----CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHH
T ss_pred ccccCCceeEecCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHH
Confidence 000011255666777777766531 12222332 1 23778899999999998763
No 393
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.69 E-value=2.5 Score=49.32 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=50.7
Q ss_pred CCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCceeEE
Q 001220 532 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSWRV 597 (1121)
Q Consensus 532 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI 597 (1121)
-..-|+|| +++.....||++.|+.||. |.+.. +...|||.|.+.++|..+++.+.-...++|
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEECSSSEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEEcCCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 35567787 8888899999999999994 44444 778899999999999999999976655544
No 394
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=63.56 E-value=1 Score=47.17 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=68.6
Q ss_pred cccceeeecccccCCccceeEEee--cccccccccccCCCCCCCCcccccCCcccc-----ccccccccccCCCCccccc
Q 001220 970 QLLQYQWQGALCKSGVHYCTIYAQ--REESDICKYTHDISEPAEWPAKLDMTKRTD-----FRHVKSTFTSTPPNKREVC 1042 (1121)
Q Consensus 970 ~~i~~~WqG~l~kSganyCtIl~s--~lds~IC~Ai~a~sepS~Wps~eD~t~RtD-----fq~Le~TFSstPpkKREV~ 1042 (1121)
+..-..|+|.+..|-.. ..+.++ .++.++..... ++... ...+-.+.|.- +++|.+.... .....++
T Consensus 34 ~~~p~~WqG~L~LKn~~-f~v~mh~v~Gn~~l~~~~L--~~~~~-~~~LRItQRmRLd~~qLe~V~rRi~~--~~~~cil 107 (195)
T 1ow1_A 34 KKYPIVWQGLLALKNDT-AAVQLHFVSGNNVLAHRSL--PLSEG-GPPLRIAQRMRLEATQLEGVARRMTV--ETDYCLL 107 (195)
T ss_dssp HHSCEEEEEEEEETTEE-EEEEEEEEEECHHHHHHHS--CCC----CCEEECEEEECSHHHHHHHHHHTSS--TTTEEEE
T ss_pred hhCchhceeeeeeecch-hhhEEEEEeCcHHHHHHhC--CCCCC-CCceeeehhhccChHHHHHHHHHHhC--CCCceEE
Confidence 34456799999988765 334443 44666554322 22111 01122222222 3334433332 2333343
Q ss_pred ccccCCCCCC-------cchhcHHHHHhhcCccceeeccchhh-HHHHhhhccCCchhhhcccc
Q 001220 1043 RLVPSSPGDH-------KGFQDFVSYLKQRECAGVIKIPAVKS-IWARLMFILPYSQDICSMLS 1098 (1121)
Q Consensus 1043 RLvPas~~D~-------k~fqDFisyLkqkd~AGViKips~k~-~w~rlL~LlP~SeEvcs~Ls 1098 (1121)
=.+|++.... +-.+.|+.||++|+.||||-++.... -=+=.||+.|+.|+.-+-|.
T Consensus 108 LAlp~~~~~~d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~ 171 (195)
T 1ow1_A 108 LALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLS 171 (195)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHH
T ss_pred EEecCCCCchhhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHH
Confidence 3455543221 13567999999999999999985322 22357999999999877444
No 395
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.83 E-value=13 Score=36.16 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=51.0
Q ss_pred cceEEEccCCCcchhHHHHHhhhc--ccccCCc-eeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 618 CFHVYVGNIPNQWAKDEILHESYK--VVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 618 s~~LwVG~iss~~~keELf~E~~k--ag~kgpv-~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
-+.|=+=+||..+.+.+|-.=+.. ....+++ .+.-.++-++++|||++..+|..|+..|++.-.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec
Confidence 466778899999999988443333 3344554 5667888999999999999999999999997655
No 396
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.38 E-value=5.8 Score=37.34 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=39.1
Q ss_pred ceEEEccCCC-----cchhHHHHHhhh-cccccCCc-eeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 619 FHVYVGNIPN-----QWAKDEILHESY-KVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 619 ~~LwVG~iss-----~~~keELf~E~~-kag~kgpv-~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
-.+.|--.++ .|-.|+|..++. +|...|.+ .+....++ ++|+|++-++|.+|++ |+++..+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 3566655543 366655554432 22234432 34444344 9999999999999998 9999877
No 397
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.16 E-value=4.7 Score=37.61 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=33.7
Q ss_pred cchhHHHHHhhhc-ccccCCc-eeeccCCCccccccccCHHHHHHHHHHHhhhccc
Q 001220 629 QWAKDEILHESYK-VVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 682 (1121)
Q Consensus 629 ~~~keELf~E~~k-ag~kgpv-~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~~ 682 (1121)
.|-.|+|..++.. |...|.+ .++...++ ++|+|++-+.|.+|+. |+++..+
T Consensus 22 ~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 22 NFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEET
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeC
Confidence 4666555544432 2234433 33444433 8999999999999998 9998876
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=37.90 E-value=65 Score=30.75 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=42.7
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhh
Q 001220 619 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 678 (1121)
Q Consensus 619 ~~LwVG~iss~~~keELf~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~ 678 (1121)
.|+++=+.|+.|...+|+.=|..++ .+.+.=+ +...+++=|.+.+.|..||..|+.
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fg---gv~I~Wi-dDTsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFG---NIQISWI-DDTSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTC---SCCCEEE-ETTEEEEECSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccC---CEEEEEE-cCCeEEEEecCHHHHHHHHHhccc
Confidence 3444449999999999988888876 4333333 367888999999999999999873
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=36.49 E-value=22 Score=35.30 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=35.7
Q ss_pred CccCHHHHHHHhhccCCcce-EE----------------Eec---cCceEEEEecCHHHHHHHHHh
Q 001220 543 PEASEAHIRFQIDRFGPLEH-FF----------------FFP---IKGFALVEYINIIDAIRAREY 588 (1121)
Q Consensus 543 ~~vte~dL~~~F~~fGpLe~-v~----------------~~~---~rgfAFVeF~~i~DAv~A~~~ 588 (1121)
+......+-..|++||.|-. +- .++ ..++--|-|.+..+|.+|++.
T Consensus 16 p~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 16 PETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 44566778899999999965 31 222 578889999999999999864
No 400
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=35.82 E-value=11 Score=43.55 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=62.6
Q ss_pred eecccccCCccceeEEeecccccccccccCCCCCCCCcccccCC--ccccccccccccccCCCCcc----------ccc-
Q 001220 976 WQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMT--KRTDFRHVKSTFTSTPPNKR----------EVC- 1042 (1121)
Q Consensus 976 WqG~l~kSganyCtIl~s~lds~IC~Ai~a~sepS~Wps~eD~t--~RtDfq~Le~TFSstPpkKR----------EV~- 1042 (1121)
+++...++..||-+|-... .+.++|..+.+.. ...|++.++++|+.++.... +..
T Consensus 9 ~~P~~klK~l~W~ki~~~~------------~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s 76 (483)
T 2j1d_G 9 PQPTNALKSFNWSKLPENK------------LEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADA 76 (483)
T ss_dssp CCCSSCBCCCCCCCCCGGG------------CSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC------------------
T ss_pred CCCCCCCCCcCceECCccc------------ccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccc
Confidence 3445567889998664333 2458999765542 24678899999997543221 100
Q ss_pred --ccccC-------CCCCCcchhcHHHHHhhcCc------cceeeccc---hh-hHHHHhhhccCCchhhhccccc
Q 001220 1043 --RLVPS-------SPGDHKGFQDFVSYLKQREC------AGVIKIPA---VK-SIWARLMFILPYSQDICSMLSI 1099 (1121)
Q Consensus 1043 --RLvPa-------s~~D~k~fqDFisyLkqkd~------AGViKips---~k-~~w~rlL~LlP~SeEvcs~Lsl 1099 (1121)
..... +.=|.|.-|.+-+.|+.... ..+..++. .. .....|+.++|..||+...-..
T Consensus 77 ~~~~~~~~kk~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~ 152 (483)
T 2j1d_G 77 IDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEH 152 (483)
T ss_dssp -----------CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTT
T ss_pred cccccccccCCCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHh
Confidence 00000 11245566777777666542 12222332 11 2678899999999998864443
No 401
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=31.12 E-value=37 Score=39.15 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=54.0
Q ss_pred ccccccCCceEEec--cCCCccCHHHHHHHhh----ccCCcceEEEe--c---cCceEEEEecCHHHHHHHHHhhc---C
Q 001220 526 AMDIFSASKQLWLG--SFGPEASEAHIRFQID----RFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIR---N 591 (1121)
Q Consensus 526 a~dv~~~S~~LWVG--nL~~~vte~dL~~~F~----~fGpLe~v~~~--~---~rgfAFVeF~~i~DAv~A~~~L~---G 591 (1121)
++.|+.+..+++-. .+..+.+.-||+.+|- .||=|..+++. + .+..+++.|.++++|.+|+..++ |
T Consensus 177 ~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~g 256 (476)
T 3pm9_A 177 GVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAA 256 (476)
T ss_dssp EEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHHHG
T ss_pred EEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHhcC
Confidence 55666666665542 2344445556666653 56677887763 3 24578999999999999999985 4
Q ss_pred CceeEEEEeccc
Q 001220 592 HFSWRVKFMDVG 603 (1121)
Q Consensus 592 ~~~~RI~F~r~~ 603 (1121)
-.+..+||||..
T Consensus 257 ~~p~a~El~d~~ 268 (476)
T 3pm9_A 257 GNLTSFELIAET 268 (476)
T ss_dssp GGEEEEEEEEHH
T ss_pred CCceEEEecCHH
Confidence 467799999873
No 402
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=30.97 E-value=10 Score=50.43 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=3.7
Q ss_pred CHHHHHHH
Q 001220 665 TPEEATTA 672 (1121)
Q Consensus 665 t~edA~~A 672 (1121)
=+|.|+++
T Consensus 1340 GIEAAR~~ 1347 (1733)
T 1twf_A 1340 GIEAGRAA 1347 (1733)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 34445444
No 403
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=30.33 E-value=18 Score=41.09 Aligned_cols=113 Identities=8% Similarity=0.105 Sum_probs=65.3
Q ss_pred cceeeecccccCCccceeEEeecccccccccccCCCCCCCCcccccCCc--cccccccccccccCCCCc--------ccc
Q 001220 972 LQYQWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTK--RTDFRHVKSTFTSTPPNK--------REV 1041 (1121)
Q Consensus 972 i~~~WqG~l~kSganyCtIl~s~lds~IC~Ai~a~sepS~Wps~eD~t~--RtDfq~Le~TFSstPpkK--------REV 1041 (1121)
+.-.|+...-|+..||.+|-...+ ..++|....|... ..|++.++++|+.+.... +.+
T Consensus 9 ~Kk~~~~k~kmk~l~W~kl~~~~i------------~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~ 76 (402)
T 4eah_A 9 IKKPIKTKFRLPVFNWTALKPNQI------------NGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKT 76 (402)
T ss_dssp -CCCCCCSSCCCCCCCCEECHHHH------------TTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------
T ss_pred CCCCCCCCCCCCCcCceeCChHhc------------cCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccc
Confidence 334477788899999998776542 2357886555443 567888999999764311 000
Q ss_pred cccccC--CCCCCcchhcHHHHHhhcCc------cceeecc--ch-hhHHHHhhhccCCchhhhcc
Q 001220 1042 CRLVPS--SPGDHKGFQDFVSYLKQREC------AGVIKIP--AV-KSIWARLMFILPYSQDICSM 1096 (1121)
Q Consensus 1042 ~RLvPa--s~~D~k~fqDFisyLkqkd~------AGViKip--s~-k~~w~rlL~LlP~SeEvcs~ 1096 (1121)
..-.|. +.=|.|.-|.+.+.|+.... ..+..++ .. ......|+.++|..||+...
T Consensus 77 ~~k~~~~v~lLd~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l 142 (402)
T 4eah_A 77 AQKAASKVTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLL 142 (402)
T ss_dssp ------CBCSSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHH
T ss_pred cccCCCceeeCCHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHH
Confidence 000011 11255667777777776541 1222222 11 13778899999999998753
No 404
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=30.33 E-value=26 Score=41.50 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=53.6
Q ss_pred ccccccCCceEEeccCCCccCHHHHHHHhh----ccCCcceEEEe--c-c--CceEEEEecCHHHHHHHHHhhc--CCce
Q 001220 526 AMDIFSASKQLWLGSFGPEASEAHIRFQID----RFGPLEHFFFF--P-I--KGFALVEYINIIDAIRAREYIR--NHFS 594 (1121)
Q Consensus 526 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~----~fGpLe~v~~~--~-~--rgfAFVeF~~i~DAv~A~~~L~--G~~~ 594 (1121)
++.|+.+..++..|.+..+.+.-||+.+|- .||=|..+++. + + +.++++.|.+.++|.+|++.+. |-.+
T Consensus 266 ~levVl~dG~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p 345 (584)
T 2uuu_A 266 SFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIP 345 (584)
T ss_dssp EEEEEETTEEECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHHTCCC
T ss_pred eEEEEeCCCCEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 567888888887776655566667777764 56778887763 3 2 3577899999999999999876 5456
Q ss_pred eEEEEecc
Q 001220 595 WRVKFMDV 602 (1121)
Q Consensus 595 ~RI~F~r~ 602 (1121)
..+||+|.
T Consensus 346 ~a~El~d~ 353 (584)
T 2uuu_A 346 TMIRVYDP 353 (584)
T ss_dssp SEEEEECH
T ss_pred eEEEEech
Confidence 69999987
No 405
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=29.05 E-value=36 Score=40.69 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=58.6
Q ss_pred cccccccCCceEEec-cCCCccCHHHHHHHh----hccCCcceEEEe--c---cCceEEEEecCHHHHHHHHHhhcCC--
Q 001220 525 AAMDIFSASKQLWLG-SFGPEASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIRNH-- 592 (1121)
Q Consensus 525 ~a~dv~~~S~~LWVG-nL~~~vte~dL~~~F----~~fGpLe~v~~~--~---~rgfAFVeF~~i~DAv~A~~~L~G~-- 592 (1121)
..+.|+.+...|+-| ....+++--||..+| +-+|=|..+++. + .+.+++|.|.+.++|.+|++.+...
T Consensus 334 lgleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~ 413 (658)
T 4bby_A 334 VHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRC 413 (658)
T ss_dssp EEEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred eeEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCC
Confidence 367888888888754 344555556888887 367888887763 3 4567899999999999999988544
Q ss_pred ceeEEEEecc
Q 001220 593 FSWRVKFMDV 602 (1121)
Q Consensus 593 ~~~RI~F~r~ 602 (1121)
.+..+||+|.
T Consensus 414 ~psa~El~D~ 423 (658)
T 4bby_A 414 APASIRLMDN 423 (658)
T ss_dssp CCSEEEEECH
T ss_pred CccccccccH
Confidence 3448999976
No 406
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.03 E-value=32 Score=32.90 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=40.8
Q ss_pred cceEEEccCCCcc-hhHHH----HHhhhcccccCCceeeccCCCccccccccCHHHHHHHHHHHhhhcc
Q 001220 618 CFHVYVGNIPNQW-AKDEI----LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 681 (1121)
Q Consensus 618 s~~LwVG~iss~~-~keEL----f~E~~kag~kgpv~f~Dl~ek~~LpVEF~t~edA~~A~~~l~~~r~ 681 (1121)
-+.|+|-++...+ ..+|+ +.=+.+++... .|.-+..=..+.|-|.+.|+|++|...|++...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f 71 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT--TFQYFKSFKRVRINFSNPLSAADARLRLHKTEF 71 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--EEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--ceeecCcceEEEEEeCChHHHHHHHHHhcccee
Confidence 3568888887754 33333 33333333222 354455556899999999999999988887653
No 407
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=24.30 E-value=25 Score=34.43 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.5
Q ss_pred HHHhcCchHHHHHHHHhhCcc
Q 001220 242 QIFFSSPKNLLAACFELFNPS 262 (1121)
Q Consensus 242 ~if~~~p~~~l~acf~l~~s~ 262 (1121)
+||+-+=||+.+--|.||+-.
T Consensus 50 ~~fl~~yknif~eff~lfrrv 70 (151)
T 4ffe_X 50 EIFLPFYKNVFSEFFSLFRRV 70 (151)
T ss_dssp SSHHHHHHHHHHHHHHTCCCC
T ss_pred eeehHHHHHHHHHHHHHHhhC
Confidence 368888899999999999644
Done!