Query 001221
Match_columns 1121
No_of_seqs 424 out of 1474
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02194 PXA: PXA domain; Int 100.0 3.1E-35 6.7E-40 309.3 18.1 181 106-287 1-184 (185)
2 smart00313 PXA Domain associat 100.0 7.8E-34 1.7E-38 296.7 17.4 173 106-287 1-174 (176)
3 PF08628 Nexin_C: Sorting nexi 99.9 2E-24 4.3E-29 210.0 11.7 112 941-1081 1-113 (113)
4 cd06872 PX_SNX19_like_plant Th 99.9 1.7E-23 3.7E-28 201.1 11.9 106 666-771 1-106 (107)
5 cd06878 PX_SNX25 The phosphoin 99.9 8E-22 1.7E-26 195.2 11.7 109 663-772 6-127 (127)
6 cd06873 PX_SNX13 The phosphoin 99.8 6.6E-21 1.4E-25 187.2 12.2 109 663-772 2-120 (120)
7 cd06877 PX_SNX14 The phosphoin 99.8 1.5E-20 3.2E-25 184.2 12.5 107 665-772 2-119 (119)
8 cd07276 PX_SNX16 The phosphoin 99.8 1.2E-20 2.6E-25 182.7 11.3 107 665-772 3-110 (110)
9 cd07279 PX_SNX20_21_like The p 99.8 2.6E-20 5.6E-25 180.9 11.3 105 666-771 1-111 (112)
10 cd06870 PX_CISK The phosphoino 99.8 6.4E-20 1.4E-24 177.3 11.1 100 670-771 7-108 (109)
11 cd07301 PX_SNX21 The phosphoin 99.8 7.6E-20 1.6E-24 177.4 11.3 104 667-771 2-111 (112)
12 cd06882 PX_p40phox The phospho 99.8 1.5E-19 3.4E-24 177.9 12.2 110 664-776 2-122 (123)
13 cd07280 PX_YPT35 The phosphoin 99.8 1.5E-19 3.2E-24 177.8 11.3 105 667-771 4-120 (120)
14 cd06861 PX_Vps5p The phosphoin 99.8 2.1E-19 4.5E-24 174.5 11.7 104 667-771 2-111 (112)
15 cd06876 PX_MDM1p The phosphoin 99.8 7E-19 1.5E-23 176.0 12.3 119 647-770 5-132 (133)
16 cd06867 PX_SNX41_42 The phosph 99.8 5.9E-19 1.3E-23 171.5 10.3 100 668-772 2-112 (112)
17 cd06875 PX_IRAS The phosphoino 99.8 1.2E-18 2.6E-23 170.1 12.1 102 666-773 4-106 (116)
18 cd06859 PX_SNX1_2_like The pho 99.8 1E-18 2.3E-23 170.1 11.1 104 667-771 2-113 (114)
19 cd06898 PX_SNX10 The phosphoin 99.8 1.4E-18 3E-23 168.9 11.7 103 668-771 2-112 (113)
20 cd07295 PX_Grd19 The phosphoin 99.8 1.7E-18 3.6E-23 169.0 12.0 106 666-772 2-114 (116)
21 cd06871 PX_MONaKA The phosphoi 99.8 1.9E-18 4E-23 169.7 12.4 106 662-773 4-111 (120)
22 cd07293 PX_SNX3 The phosphoino 99.8 2E-18 4.4E-23 169.9 12.4 107 666-772 2-121 (123)
23 cd06865 PX_SNX_like The phosph 99.8 1.4E-18 3.1E-23 170.7 11.1 104 668-771 2-119 (120)
24 cd07282 PX_SNX2 The phosphoino 99.8 1.6E-18 3.5E-23 171.0 11.5 105 667-771 2-123 (124)
25 cd07281 PX_SNX1 The phosphoino 99.8 1.8E-18 4E-23 170.9 11.6 106 666-771 1-123 (124)
26 cd06894 PX_SNX3_like The phosp 99.8 2.5E-18 5.3E-23 169.5 12.2 107 666-772 2-121 (123)
27 cd07286 PX_SNX18 The phosphoin 99.8 1.6E-18 3.5E-23 170.5 10.7 102 667-772 2-107 (127)
28 cd06862 PX_SNX9_18_like The ph 99.8 1.8E-18 3.9E-23 170.7 10.8 103 667-773 2-108 (125)
29 cd06860 PX_SNX7_30_like The ph 99.8 2.4E-18 5.2E-23 168.1 11.5 105 667-771 2-115 (116)
30 cd06863 PX_Atg24p The phosphoi 99.8 3.1E-18 6.7E-23 167.9 11.7 106 666-771 1-117 (118)
31 cd07300 PX_SNX20 The phosphoin 99.8 3.6E-18 7.7E-23 166.1 11.3 104 668-772 3-112 (114)
32 cd06886 PX_SNX27 The phosphoin 99.8 3.3E-18 7.1E-23 164.4 10.9 100 666-771 4-105 (106)
33 cd06864 PX_SNX4 The phosphoino 99.8 3.6E-18 7.7E-23 169.7 11.0 104 668-771 3-128 (129)
34 cd06883 PX_PI3K_C2 The phospho 99.8 4.5E-18 9.7E-23 164.3 11.4 103 668-771 2-108 (109)
35 cd07283 PX_SNX30 The phosphoin 99.8 5.4E-18 1.2E-22 165.3 11.8 105 667-771 2-115 (116)
36 cd06897 PX_SNARE The phosphoin 99.7 5E-18 1.1E-22 163.8 11.2 100 668-771 3-107 (108)
37 cd06880 PX_SNX22 The phosphoin 99.7 7.6E-18 1.7E-22 163.0 11.8 100 667-773 2-103 (110)
38 cd07294 PX_SNX12 The phosphoin 99.7 1.6E-17 3.5E-22 165.1 12.9 108 666-773 4-124 (132)
39 cd07285 PX_SNX9 The phosphoino 99.7 1E-17 2.2E-22 164.5 10.5 104 667-774 2-110 (126)
40 cd06866 PX_SNX8_Mvp1p_like The 99.7 1.2E-17 2.6E-22 160.3 10.7 87 681-771 16-104 (105)
41 cd07284 PX_SNX7 The phosphoino 99.7 1.7E-17 3.6E-22 161.8 11.8 106 666-771 1-115 (116)
42 cd06893 PX_SNX19 The phosphoin 99.7 9.2E-18 2E-22 167.1 10.1 107 665-771 3-131 (132)
43 cd07277 PX_RUN The phosphoinos 99.7 1.2E-17 2.7E-22 163.1 10.5 103 667-772 2-106 (118)
44 cd06881 PX_SNX15_like The phos 99.7 3.2E-17 6.9E-22 160.5 10.7 101 667-771 4-116 (117)
45 cd06884 PX_PI3K_C2_68D The pho 99.7 5.2E-17 1.1E-21 157.0 11.3 104 667-771 3-110 (111)
46 cd06868 PX_HS1BP3 The phosphoi 99.7 4.1E-17 8.9E-22 160.0 10.7 92 677-771 14-119 (120)
47 cd07287 PX_RPK118_like The pho 99.7 5.2E-17 1.1E-21 158.6 11.3 100 668-771 5-117 (118)
48 cd06885 PX_SNX17_31 The phosph 99.7 3.8E-17 8.2E-22 156.6 9.0 96 670-771 4-102 (104)
49 cd06874 PX_KIF16B_SNX23 The ph 99.7 1.2E-16 2.5E-21 158.1 11.3 97 667-765 2-101 (127)
50 cd06888 PX_FISH The phosphoino 99.7 1.8E-16 3.9E-21 154.8 12.0 105 667-772 3-119 (119)
51 cd07288 PX_SNX15 The phosphoin 99.7 1.4E-16 3.1E-21 155.7 10.7 100 668-771 5-117 (118)
52 cd06869 PX_UP2_fungi The phosp 99.7 2.9E-16 6.2E-21 153.7 11.2 87 678-771 28-118 (119)
53 cd06879 PX_UP1_plant The phosp 99.7 2.8E-16 6.1E-21 155.6 10.2 91 680-771 41-137 (138)
54 cd06895 PX_PLD The phosphoinos 99.7 4.3E-16 9.2E-21 156.4 11.1 106 664-772 2-140 (140)
55 cd07296 PX_PLD1 The phosphoino 99.6 5.3E-16 1.2E-20 152.9 10.9 108 664-772 2-135 (135)
56 cd07289 PX_PI3K_C2_alpha The p 99.6 6.5E-16 1.4E-20 147.8 11.0 102 668-771 2-108 (109)
57 cd06887 PX_p47phox The phospho 99.6 1.4E-15 3E-20 148.2 12.0 103 667-773 3-117 (118)
58 cd06093 PX_domain The Phox Hom 99.6 2.3E-15 4.9E-20 143.0 11.8 102 668-770 2-105 (106)
59 smart00312 PX PhoX homologous 99.6 1.2E-15 2.5E-20 145.7 9.4 92 679-770 8-105 (105)
60 cd07290 PX_PI3K_C2_beta The ph 99.6 5.9E-15 1.3E-19 141.4 11.6 100 670-771 4-108 (109)
61 PF00787 PX: PX domain; Inter 99.6 3.7E-15 8.1E-20 143.1 9.3 106 665-772 3-113 (113)
62 cd06890 PX_Bem1p The phosphoin 99.6 1.9E-14 4.2E-19 139.8 11.2 99 667-771 2-111 (112)
63 cd06891 PX_Vps17p The phosphoi 99.5 2.6E-14 5.7E-19 142.5 11.1 106 663-771 27-139 (140)
64 KOG2527 Sorting nexin SNX11 [I 99.5 2E-14 4.4E-19 138.3 6.0 108 665-772 17-130 (144)
65 cd07297 PX_PLD2 The phosphoino 99.5 1.9E-13 4E-18 132.0 9.5 108 664-772 2-130 (130)
66 cd06889 PX_NoxO1 The phosphoin 99.4 2E-12 4.3E-17 126.0 11.7 104 663-771 3-120 (121)
67 cd07292 PX_SNX6 The phosphoino 99.3 8.7E-12 1.9E-16 122.6 10.0 102 666-771 3-140 (141)
68 cd07291 PX_SNX5 The phosphoino 99.3 1.1E-11 2.3E-16 122.2 9.7 102 666-771 3-140 (141)
69 KOG1259 Nischarin, modulator o 99.2 1.4E-11 3.1E-16 133.9 7.7 91 680-772 24-115 (490)
70 cd06892 PX_SNX5_like The phosp 99.2 3.8E-11 8.3E-16 119.6 10.1 91 681-771 14-140 (141)
71 cd06896 PX_PI3K_C2_gamma The p 99.1 1.4E-10 3.1E-15 107.5 8.1 84 684-770 13-99 (101)
72 KOG2273 Membrane coat complex 99.1 3.7E-10 7.9E-15 137.1 10.1 108 666-773 110-228 (503)
73 KOG2528 Sorting nexin SNX9/SH3 98.8 7.8E-09 1.7E-13 117.6 7.1 114 664-781 184-303 (490)
74 KOG2101 Intermediate filament- 98.6 9.2E-08 2E-12 111.6 10.8 92 961-1081 270-361 (362)
75 COG5391 Phox homology (PX) dom 98.3 8.8E-07 1.9E-11 106.7 8.4 86 678-763 146-244 (524)
76 KOG3784 Sorting nexin protein 98.3 1.4E-06 2.9E-11 99.0 7.4 90 679-774 13-104 (407)
77 KOG0905 Phosphoinositide 3-kin 98.0 9.4E-06 2E-10 101.1 8.2 105 667-772 1377-1485(1639)
78 KOG4773 NADPH oxidase [Energy 97.7 2.5E-05 5.5E-10 87.2 3.7 107 664-773 20-138 (386)
79 cd07298 PX_RICS The phosphoino 97.2 0.0011 2.4E-08 63.3 8.0 81 684-770 28-114 (115)
80 cd07299 PX_TCGAP The phosphoin 96.6 0.0078 1.7E-07 57.2 8.0 84 681-770 23-112 (113)
81 cd07278 PX_RICS_like The phosp 96.6 0.0077 1.7E-07 57.5 7.7 84 681-770 24-113 (114)
82 KOG2101 Intermediate filament- 93.1 0.066 1.4E-06 62.9 3.3 90 677-766 129-232 (362)
83 KOG1660 Sorting nexin SNX6/TFA 58.9 22 0.00048 41.1 6.5 90 684-773 40-164 (399)
84 KOG1329 Phospholipase D1 [Lipi 44.3 24 0.00052 45.6 4.3 100 666-773 47-165 (887)
85 PLN02866 phospholipase D 41.1 17 0.00036 47.9 2.4 92 684-776 33-175 (1068)
86 PF03649 UPF0014: Uncharacteri 32.9 96 0.0021 34.9 6.4 49 9-59 32-80 (250)
87 PF11674 DUF3270: Protein of u 29.8 1.1E+02 0.0024 29.1 5.2 36 21-56 44-79 (90)
88 PF14571 Di19_C: Stress-induce 25.2 85 0.0018 30.6 3.8 24 1028-1051 81-104 (105)
89 PF04304 DUF454: Protein of un 25.0 1.7E+02 0.0037 26.0 5.5 42 17-60 27-68 (71)
90 KOG0431 Auxilin-like protein a 23.4 1.6E+02 0.0036 36.0 6.6 74 975-1078 370-443 (453)
No 1
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=100.00 E-value=3.1e-35 Score=309.32 Aligned_cols=181 Identities=31% Similarity=0.606 Sum_probs=158.4
Q ss_pred ChHHHHHHHHHHHHHHHhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 001221 106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185 (1121)
Q Consensus 106 sp~Vd~~L~~li~~IirDfV~~~WY~~IS~d~~F~~eir~~l~~~~~~l~~Rl~~vD~~~ll~~~lv~ll~~Hl~~fr~A 185 (1121)
||.|+++|++++++|+|||| ++||+.||+|++|+++++..|++++.++..|+++||+.++++.+++++++.|++.||+|
T Consensus 1 s~~vd~~l~~li~~I~rdfV-~sWY~~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl~~~r~a 79 (185)
T PF02194_consen 1 SPEVDEALHELIDLILRDFV-NSWYSKISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHLRDYREA 79 (185)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcchhhhhHHHHHHHHhcc-CCCcc-cCChHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhh
Q 001221 186 QAKIEKQHSEPLTIERRDIEIRCVLAAEN-KLHPA-LFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACA 263 (1121)
Q Consensus 186 ~~~~~~~~~~~~s~e~~~~~l~~~l~~~~-~lHpa-l~s~e~E~~yLR~l~~~LL~~LLp~~~~~s~~~r~llREILa~~ 263 (1121)
++..+.........+.............. .+||| +.+++.|.+|||.+++.||+.+||+++.+|++++.|+||||||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~a~~~~~~~e~~ylr~l~~~ll~~llp~~~~~s~~~~~l~rEILa~~ 159 (185)
T PF02194_consen 80 RERLSEDSSSSSQSESSELDLFIASEYEKAHLHPAVLSSPESELEYLRKLSERLLPFLLPPEELSSPPVRLLLREILACQ 159 (185)
T ss_pred HhhhccccccccccchhhhHHHHHHhccccCCCchhccccchHHHHHHHHHHHHHHHHCChhhccccHHHHHHHHHHHHH
Confidence 99884322221111111222233333334 49999 88999999999999999999999999999999999999999999
Q ss_pred hHhhhcc-cCChhHHHHHHHHHHHH
Q 001221 264 VMRPVLN-LANPRFINERIESLAVS 287 (1121)
Q Consensus 264 VL~Pli~-LSdPD~IN~~Ii~l~~~ 287 (1121)
||.|+|+ +|||||||++|++++++
T Consensus 160 VL~p~i~~lsdPd~iN~~ii~~~~~ 184 (185)
T PF02194_consen 160 VLLPLIDKLSDPDFINQLIIKLLEK 184 (185)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 99999999999998764
No 2
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=100.00 E-value=7.8e-34 Score=296.67 Aligned_cols=173 Identities=23% Similarity=0.354 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHHHHHHHhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 001221 106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185 (1121)
Q Consensus 106 sp~Vd~~L~~li~~IirDfV~~~WY~~IS~d~~F~~eir~~l~~~~~~l~~Rl~~vD~~~ll~~~lv~ll~~Hl~~fr~A 185 (1121)
.|.|+++|+++|++|||||| ++||++||+|++|+++++..|++++++++.|++++|++++++..++..+..|++. |
T Consensus 1 ~~~i~~~L~~li~~IirdfV-~sWY~~is~d~~F~~~i~~~l~~~~~~l~~Rl~~vD~~~ll~~~i~~~~~~~~~~---a 76 (176)
T smart00313 1 PAQLEEPLQLLISKIIRDYV-QGWYKGVSEDPSFLREIEQTLEYILRQLYRRLSRQDSAHLILYEILKNLISTITN---A 76 (176)
T ss_pred ChhhHHHHHHHHHHHHHHHH-HHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH---H
Confidence 36899999999999999999 5999999999999999999999999999999999999999966666666666554 4
Q ss_pred HHHHhhccCCCcchhhhhHHHHHHHHhccCCCcccCChHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhhH
Q 001221 186 QAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVM 265 (1121)
Q Consensus 186 ~~~~~~~~~~~~s~e~~~~~l~~~l~~~~~lHpal~s~e~E~~yLR~l~~~LL~~LLp~~~~~s~~~r~llREILa~~VL 265 (1121)
++.+..... +. .....++..++ +..+|||+.+++.|.+|||.+++.||+.+||+++..|+++|+|+||||||+||
T Consensus 77 ~~a~~~~~~-~~---~~~~~~~~~~~-~~~lh~al~~~~~e~~ylR~~~~~lL~~lLp~~~~~s~~~r~llREIla~~VL 151 (176)
T smart00313 77 LEAVLRFAS-PQ---IPSTEIDLQYA-ETAIHKALSSPSNELTYRRQLVEMLLKFLLPEDSLCSRLHRCLLREVLAMQVI 151 (176)
T ss_pred HHHHHcccC-Cc---CccccHHHHHh-hccCChhhcCcchHHHHHHHHHHHHHHHhCCHhhccChHHHHHHHHHHHHHHH
Confidence 333322111 00 01123333333 35599999999999999999999999999999999999999999999999999
Q ss_pred hhhcc-cCChhHHHHHHHHHHHH
Q 001221 266 RPVLN-LANPRFINERIESLAVS 287 (1121)
Q Consensus 266 ~Pli~-LSdPD~IN~~Ii~l~~~ 287 (1121)
.|+|+ +|||||||++|++++++
T Consensus 152 ~p~i~~lsdPd~iN~~Ii~l~~~ 174 (176)
T smart00313 152 LPLITHLSDPDTINLCIILLFSS 174 (176)
T ss_pred HHHHHHccCchHHHHHHHHHhhc
Confidence 99999 99999999999998875
No 3
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=99.91 E-value=2e-24 Score=210.03 Aligned_cols=112 Identities=26% Similarity=0.525 Sum_probs=104.3
Q ss_pred ccc-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhchhHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCcC
Q 001221 941 WIR-RKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRPKRRQVPPSSSSQGSPQVR 1019 (1121)
Q Consensus 941 WlR-r~~~~v~kqilq~~~G~tI~~~i~~~i~~l~se~~v~~~i~~l~~~lWP~G~~~~~~p~r~~~~~~~~~~~~~~~~ 1019 (1121)
||| |++++++|++++++||++||+||.+.|.++++|++|+.||..|++++||||.+++..|
T Consensus 1 Wlr~r~i~~~l~~~l~~~~g~tI~r~i~~~v~~l~se~~v~~~i~~l~~~lwP~g~~~~~~~------------------ 62 (113)
T PF08628_consen 1 WLRRRQILAVLQQILRQTFGSTIERKIRDQVEWLTSEEQVARYIQLLRESLWPNGKLAEPPP------------------ 62 (113)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhCCCCCCCCCCC------------------
Confidence 998 9999999999999999999999999999999999999999999999999998753221
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcccccccChHHHHHHHHHHHHHhcChHH
Q 001221 1020 QPAEISSPGLSEEQKQEADRRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVC 1081 (1121)
Q Consensus 1020 ~~~~~~~~r~s~eek~et~~~A~~~~~~ll~~~P~~L~~lvG~~~~~~~~~~if~~lQ~~~l 1081 (1121)
|| |++||.+|+.+|+ ..|++.+|+.|+++||++++++|+.+||+||||++|
T Consensus 63 -------~R-t~~ek~~tr~~A~---~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~~~L 113 (113)
T PF08628_consen 63 -------PR-TEEEKLRTRQEAR---ELLLSLLPDTLKKVVGSENSRRGARRIFEMLQNPRL 113 (113)
T ss_pred -------CC-CHHHHHHHHHHHH---HHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCCCcC
Confidence 25 9999999999997 688999999999999999999999999999999975
No 4
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.90 E-value=1.7e-23 Score=201.07 Aligned_cols=106 Identities=63% Similarity=1.064 Sum_probs=99.0
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHccccCCCCCCCccccCCCCChHHHHHHHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKL 745 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~~p~~~p~LP~K~~~~~~~~~~flekRr~~ 745 (1121)
++|+|++++++++|++.|++|.|.|+.+.+..|.|.||||||++||++|++++...++||+|+++.++++++|||+||.+
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~~ 80 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELPPKRFLSSSLDGAFIEERCKL 80 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHhccCCCCCCCCccccCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999865779999999999999999999887667899999998568999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhhccccc
Q 001221 746 LDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 746 Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
||.||+.|+++|.+++|++|++||..
T Consensus 81 Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 81 LDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 99999999999999999999999975
No 5
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.86 E-value=8e-22 Score=195.21 Aligned_cols=109 Identities=26% Similarity=0.472 Sum_probs=97.1
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecC---------CCeeEEEeccchHHHHHHHHHc-cccC---CCCCCCccc
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN---------NNSWSIKRRFRHFEELHRRLKF-FQEY---NLHLPPKHF 729 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~---------~~~w~V~RRYsdF~~Lh~~Lk~-~p~~---~p~LP~K~~ 729 (1121)
..+++|.|.+++++.++++.|++|.|.|++.+ ..+|+|.|||+||++||++|++ |+.. .+|+|+|++
T Consensus 6 ~~~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~ 85 (127)
T cd06878 6 LGKWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKW 85 (127)
T ss_pred CCcceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccc
Confidence 34688999999998999999999999999752 3579999999999999999996 7653 466678888
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 730 LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 730 ~~~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+ ++++++|+|+||.+||.|||.|+++|.++++++|++||+++
T Consensus 86 ~-~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 86 F-KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSPS 127 (127)
T ss_pred c-ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCCC
Confidence 8 78899999999999999999999999999999999999975
No 6
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.84 E-value=6.6e-21 Score=187.16 Aligned_cols=109 Identities=38% Similarity=0.642 Sum_probs=99.7
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCCh
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDV 736 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~ 736 (1121)
.++++|.|+++++++++++.|++|.|+|.... ...|.|+||||||++||++|++ ||.. .|+||+|+++ ++++.
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~-~~~~~ 80 (120)
T cd06873 2 KFKLTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF-NNLDR 80 (120)
T ss_pred CcEEEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc-CCCCH
Confidence 47899999999999999999999999998642 4689999999999999999994 8875 7999999998 89999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCC----hhhhcccccc
Q 001221 737 SVIQERCKLLDRYLKMLLQLPTVSGS----IEVWDFLSVD 772 (1121)
Q Consensus 737 ~flekRr~~Le~YLq~LL~~p~l~~s----~~l~~FL~~~ 772 (1121)
+|+|+||.+||.||+.|+++|.++++ +.|.+||+++
T Consensus 81 ~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~~ 120 (120)
T cd06873 81 AFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEPG 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999 6888998863
No 7
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.84 E-value=1.5e-20 Score=184.21 Aligned_cols=107 Identities=23% Similarity=0.486 Sum_probs=95.2
Q ss_pred eEEEEEecceEEec--CCCceEEEEEEEEec-------CCCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCC
Q 001221 665 KLRCEVLGANIVKS--DSRTFAVYAIAVTDS-------NNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTG 733 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~--~~k~y~vY~I~V~~~-------~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~ 733 (1121)
++++.|.++++..+ +++.|++|.|.|+.. ....|.|.||||||.+||.+|++ |+.. .|+||+|+++ ++
T Consensus 2 ~~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~-~~ 80 (119)
T cd06877 2 AWRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIF-GP 80 (119)
T ss_pred cceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCccc-CC
Confidence 35677888777765 789999999999963 24689999999999999999995 7765 7999999998 78
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 734 ~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
++++|+|+||.+||.||+.|+++|.++.++.|++||++.
T Consensus 81 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 81 KSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 999999999999999999999999999999999999873
No 8
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.84 E-value=1.2e-20 Score=182.67 Aligned_cols=107 Identities=27% Similarity=0.559 Sum_probs=96.5
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHHHHHH
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~flekRr 743 (1121)
++++.|+|.+++.+ .+.|++|.|+|....+..|.|+||||||..||.+|++ ||...|+||+|+++.++++++|+++||
T Consensus 3 ~~~~~i~~~~~~~~-~~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~fie~Rr 81 (110)
T cd07276 3 PIRPPILGYEVMEE-RARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFKDNFDPDFLEERQ 81 (110)
T ss_pred CccceeeeEEEeec-CCCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceecccCCHHHHHHHH
Confidence 35778899888776 5789999999998756799999999999999999995 888788999999885579999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 744 ~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
.+||.||+.|+++|.++++++|++||+.+
T Consensus 82 ~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 82 LGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999863
No 9
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.83 E-value=2.6e-20 Score=180.94 Aligned_cols=105 Identities=26% Similarity=0.517 Sum_probs=96.6
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC---CCeeEEEeccchHHHHHHHHH-ccccC--CCCCCCccccCCCCChHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN---NNSWSIKRRFRHFEELHRRLK-FFQEY--NLHLPPKHFLSTGLDVSVI 739 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~---~~~w~V~RRYsdF~~Lh~~Lk-~~p~~--~p~LP~K~~~~~~~~~~fl 739 (1121)
++|+|+++.+++++++.|++|.|+|.... ...|.|+||||||..||.+|+ .||.. .|+||+|+++ ++++++||
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~-~~~~~~~i 79 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM-GNFSSELI 79 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec-ccCCHHHH
Confidence 47999999999999999999999998652 457999999999999999999 58874 5789999998 78999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
++||.+||.||+.|+++|.+++++++++||..
T Consensus 80 e~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 80 AERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 99999999999999999999999999999974
No 10
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.81 E-value=6.4e-20 Score=177.34 Aligned_cols=100 Identities=27% Similarity=0.517 Sum_probs=89.5
Q ss_pred EecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCC-CCChHHHHHHHHHHH
Q 001221 670 VLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLST-GLDVSVIQERCKLLD 747 (1121)
Q Consensus 670 I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~-~~~~~flekRr~~Le 747 (1121)
|.......++++.|++|.|+|..+ +..|.|+||||||++||++|++ ||...++||+|+++ + +++++|+++||.+||
T Consensus 7 i~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~-~~~~~~~~ie~Rr~~Le 84 (109)
T cd06870 7 IPSSDEDREKKKRFTVYKVVVSVG-RSSWFVFRRYAEFDKLYESLKKQFPASNLKIPGKRLF-GNNFDPDFIKQRRAGLD 84 (109)
T ss_pred eccceeeccCCCCeEEEEEEEEEC-CeEEEEEeehHHHHHHHHHHHHHCcccCcCCCCCccc-ccCCCHHHHHHHHHHHH
Confidence 344344456789999999999876 7799999999999999999995 88876789999999 6 899999999999999
Q ss_pred HHHHHhhcCCCCCCChhhhccccc
Q 001221 748 RYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 748 ~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
.||+.|+++|.++++++|.+||..
T Consensus 85 ~fL~~ll~~p~l~~s~~~~~FL~~ 108 (109)
T cd06870 85 EFIQRLVSDPKLLNHPDVRAFLQM 108 (109)
T ss_pred HHHHHHhCCHhhhcChHHHHHhCc
Confidence 999999999999999999999975
No 11
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.81 E-value=7.6e-20 Score=177.40 Aligned_cols=104 Identities=28% Similarity=0.523 Sum_probs=94.2
Q ss_pred EEEEecceEEecCCCceEEEEEEEEec---CCCeeEEEeccchHHHHHHHHH-ccccC--CCCCCCccccCCCCChHHHH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDS---NNNSWSIKRRFRHFEELHRRLK-FFQEY--NLHLPPKHFLSTGLDVSVIQ 740 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~---~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~--~p~LP~K~~~~~~~~~~fle 740 (1121)
.++|.++.++++|+++|++|.|.|... ++..|.|.||||||++||++|+ +|+.. .++||+|+++ ++++++|+|
T Consensus 2 ~~~v~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~-~~~~~~~ie 80 (112)
T cd07301 2 LFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR-KNFTAETIA 80 (112)
T ss_pred EEEECCCeEeccCCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc-CCCCHHHHH
Confidence 467889999999999999999999753 2568999999999999999999 58874 3689999998 799999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 741 kRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+||.+||.||+.|+++|.++.++.+++||..
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 81 KRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 9999999999999999999999999999964
No 12
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.81 E-value=1.5e-19 Score=177.92 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=96.4
Q ss_pred eeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc---------CCCCCCCccccCCC
Q 001221 664 FKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLSTG 733 (1121)
Q Consensus 664 ~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~---------~~p~LP~K~~~~~~ 733 (1121)
..|.|.|.+.+.. .|.++|++|.|+|+..++..|.|+|||+||++||.+|++ ||. .+|+||+|+++ ++
T Consensus 2 ~~i~~~I~~~~~~-~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~-~~ 79 (123)
T cd06882 2 VAVSATIADIEEK-RGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV-GR 79 (123)
T ss_pred CcEEEEEeeeeEE-eCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec-Cc
Confidence 3588899987644 677999999999998767799999999999999999995 874 27899999998 66
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCC-CCCChhhhccccccccCc
Q 001221 734 LDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQTY 776 (1121)
Q Consensus 734 ~~~~flekRr~~Le~YLq~LL~~p~-l~~s~~l~~FL~~~~~~y 776 (1121)
.+ +|+|+||.+||.||+.|++.|. +++|++|++||...+..|
T Consensus 80 ~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~d~ 122 (123)
T cd06882 80 KA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTESDS 122 (123)
T ss_pred cH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCcccc
Confidence 55 9999999999999999999975 999999999999987654
No 13
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.80 E-value=1.5e-19 Score=177.75 Aligned_cols=105 Identities=26% Similarity=0.356 Sum_probs=93.6
Q ss_pred EEEEecceEEecC--CCceEEEEEEEEecC--CCeeEEEeccchHHHHHHHHH-ccccC----CCCCCCccccCC---CC
Q 001221 667 RCEVLGANIVKSD--SRTFAVYAIAVTDSN--NNSWSIKRRFRHFEELHRRLK-FFQEY----NLHLPPKHFLST---GL 734 (1121)
Q Consensus 667 ~a~I~g~~~~~~~--~k~y~vY~I~V~~~~--~~~w~V~RRYsdF~~Lh~~Lk-~~p~~----~p~LP~K~~~~~---~~ 734 (1121)
.+.|.|+.+++++ ++.|++|.|+|+.+. +..|.|+||||||..||++|+ .||.. +|+||+|+++.. ++
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~~ 83 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVNL 83 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccccC
Confidence 3567888888665 699999999998764 579999999999999999999 58863 699999998832 89
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 735 ~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+.+|+|+|+.+||.||+.|+++|.+++|++|++||.+
T Consensus 84 ~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 84 NKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 9999999999999999999999999999999999974
No 14
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.80 E-value=2.1e-19 Score=174.54 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=95.0
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQ 740 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~fle 740 (1121)
.+.|.++.+++++.+.|++|.|+++... ...|.|.|||+||..||++|+ +||+. .|+||+|+++ ++++++|+|
T Consensus 2 ~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~-~~~~~~fie 80 (112)
T cd06861 2 EITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV-GRFDDNFVE 80 (112)
T ss_pred EEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc-cCCCHHHHH
Confidence 4667888888888899999999998752 468999999999999999999 58886 8999999998 789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 741 kRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+||.+||.||+.|+++|.++++++|++||+.
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 81 QRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 9999999999999999999999999999985
No 15
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.78 E-value=7e-19 Score=175.99 Aligned_cols=119 Identities=31% Similarity=0.484 Sum_probs=100.4
Q ss_pred CCCCCCccccccccccceeEEEEEecceEEec-CCCceEEEEEEEEecCC----CeeEEEeccchHHHHHHHHHc-cccC
Q 001221 647 HSSTVNPVQNSLMVDSFFKLRCEVLGANIVKS-DSRTFAVYAIAVTDSNN----NSWSIKRRFRHFEELHRRLKF-FQEY 720 (1121)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~i~a~I~g~~~~~~-~~k~y~vY~I~V~~~~~----~~w~V~RRYsdF~~Lh~~Lk~-~p~~ 720 (1121)
++|+.+...+++++... +.|.++.+..+ +++.|++|.|+|+..++ ..|.|.||||||.+||.+|++ ||..
T Consensus 5 ~~~~~~~~~~~~~~~~~----i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~ 80 (133)
T cd06876 5 QQYMVQENDNSLYGRTR----VSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGV 80 (133)
T ss_pred hhhhhhcccccccCcce----EEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCC
Confidence 36788888888887543 44555444333 47899999999997532 489999999999999999995 8875
Q ss_pred -CCCCCCccccCCCC--ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccc
Q 001221 721 -NLHLPPKHFLSTGL--DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLS 770 (1121)
Q Consensus 721 -~p~LP~K~~~~~~~--~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~ 770 (1121)
.|+||+|+++ ++. +.+|+++||.+||.||+.|+++|.+++++.+.+||+
T Consensus 81 ~~p~~P~K~~~-~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 81 LKLDFPQKRKI-SLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred CCCCCCccccc-cCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 7999999988 555 899999999999999999999999999999999995
No 16
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.78 E-value=5.9e-19 Score=171.46 Aligned_cols=100 Identities=28% Similarity=0.484 Sum_probs=88.8
Q ss_pred EEEecceEEecC-CCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccC--------CCCCh
Q 001221 668 CEVLGANIVKSD-SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLS--------TGLDV 736 (1121)
Q Consensus 668 a~I~g~~~~~~~-~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~--------~~~~~ 736 (1121)
.+|+++..+++| ++.|++|.|+|.. |.|+||||||+.||+.|++ ||+. .|+||+|+.+. ++++.
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~-----~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~ 76 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG-----SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDA 76 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee-----EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcH
Confidence 367888888875 5789999998853 9999999999999999995 8885 89999999652 25899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 737 ~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+|+|+||++||.||+.|+++|.++.|+.|.+||+++
T Consensus 77 ~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 77 KIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 999999999999999999999999999999999863
No 17
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.78 E-value=1.2e-18 Score=170.05 Aligned_cols=102 Identities=28% Similarity=0.463 Sum_probs=90.8
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHHHHHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
..+.|.+.+.. +.|++|.|+|+.+ +..|.|+||||||.+||++|++ ++...|+||+|+++ ++++++|+++||.
T Consensus 4 ~~v~I~~~~~~----~~~~~Y~I~V~~~-~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~-~~~~~~~ie~Rr~ 77 (116)
T cd06875 4 TKIRIPSAETV----EGYTVYIIEVKVG-SVEWTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLI-GNKSPSFVEKRRK 77 (116)
T ss_pred EEEEECCEEEE----CCEEEEEEEEEEC-CeEEEEEecHHHHHHHHHHHHHHcCcccCcCCCcccc-CCCCHHHHHHHHH
Confidence 45667766533 6899999999876 6799999999999999999995 64347889999999 7899999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 745 ~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+||.||+.|++++.++.+++|.+||+..+
T Consensus 78 ~Le~yL~~ll~~~~~~~s~~l~~FL~~~~ 106 (116)
T cd06875 78 ELEIYLQTLLSFFQKTMPRELAHFLDFHK 106 (116)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHhCCCc
Confidence 99999999999999999999999999984
No 18
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.77 E-value=1e-18 Score=170.13 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=93.5
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChH--H
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVS--V 738 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~--f 738 (1121)
.+.|.+++++++|.+.|++|.|.|+.+. +..|.|+|||+||..||++|++ +|+. +|+||+|+++ ++++.+ +
T Consensus 2 ~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~-~~~~~~~~~ 80 (114)
T cd06859 2 EISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAV-GRFKVKFEF 80 (114)
T ss_pred EEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCccc-CccCccHHH
Confidence 5678899999999999999999998642 4689999999999999999995 8875 8999999988 666655 9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 739 IQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 739 lekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+|+||.+||.||+.|+++|.++++++|+.||+.
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCC
Confidence 999999999999999999999999999999975
No 19
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.77 E-value=1.4e-18 Score=168.90 Aligned_cols=103 Identities=25% Similarity=0.359 Sum_probs=91.1
Q ss_pred EEEecceEEec-CCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc-ccc-CCCCCCCccccCCCCC-hHHH
Q 001221 668 CEVLGANIVKS-DSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD-VSVI 739 (1121)
Q Consensus 668 a~I~g~~~~~~-~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~-~p~-~~p~LP~K~~~~~~~~-~~fl 739 (1121)
++|.++.+..+ +++.|++|.|.++.+. ...|.|+||||||..||.+|++ ++. ..|+||+|+++ ++++ ++|+
T Consensus 2 v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~-~~~~~~~fi 80 (113)
T cd06898 2 VEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLF-GRFNNEGFI 80 (113)
T ss_pred eEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccc-cCCCCHHHH
Confidence 46777777765 7889999999998653 2578999999999999999995 887 48999999998 6677 9999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
|+||++||.||+.|+++|.++.++.|..||..
T Consensus 81 e~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 81 EERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 99999999999999999999999999999974
No 20
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.77 E-value=1.7e-18 Score=169.01 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=94.9
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVI 739 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~fl 739 (1121)
+.+.|.++...++|++.|++|.|.+..+. ...|.|+|||+||..||.+|++ ||.. +|+||+|.++ ++++.+|+
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~-~~~~~~~i 80 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT-NRFSDEVI 80 (116)
T ss_pred eEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc-cCCCHHHH
Confidence 46778888888899999999999986542 3579999999999999999994 8875 7999999988 78999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-CChhhhcccccc
Q 001221 740 QERCKLLDRYLKMLLQLPTVS-GSIEVWDFLSVD 772 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~-~s~~l~~FL~~~ 772 (1121)
|+||.+||.||+.|+++|.++ .++.+.+||+..
T Consensus 81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 999999999999999999998 589999999876
No 21
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.77 E-value=1.9e-18 Score=169.72 Aligned_cols=106 Identities=28% Similarity=0.539 Sum_probs=92.6
Q ss_pred cceeEEEEEecceEEecCCCceEEEEEEEEecC--CCeeEEEeccchHHHHHHHHHccccCCCCCCCccccCCCCChHHH
Q 001221 662 SFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN--NNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVI 739 (1121)
Q Consensus 662 ~~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~--~~~w~V~RRYsdF~~Lh~~Lk~~p~~~p~LP~K~~~~~~~~~~fl 739 (1121)
.+.+|+|.|.+.+ +.+.|++|.|+|+.+. +..|.|+||||||+.||++|+... ..++||+|+++ ++++++|+
T Consensus 4 ~~~~~~~~i~~~~----~~~~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~~-~~~plP~K~~~-g~~~~~~i 77 (120)
T cd06871 4 DTVPLTCVIEASQ----NIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISG-ISLPLPPKKLI-GNMDREFI 77 (120)
T ss_pred CCceeEEEEecCC----CccCcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHcC-CCCCCCCcccc-CCCCHHHH
Confidence 3678999998764 4568999999998642 569999999999999999999542 34579999998 78999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
++||.+||.||+.|+++|.+++++.+++||++.+
T Consensus 78 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 111 (120)
T cd06871 78 AERQQGLQNYLNVILMNPILASCLPVKKFLDPNN 111 (120)
T ss_pred HHHHHHHHHHHHHHHcChhhccCHHHHHhcCccc
Confidence 9999999999999999999999999999998763
No 22
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.77 E-value=2e-18 Score=169.91 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=95.7
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHccccC-CCCCCCccccC--------C
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHFLS--------T 732 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~~p~~-~p~LP~K~~~~--------~ 732 (1121)
+.+.|.++....+|.+.|++|.|.++.+. ...|.|+|||+||..||..|+++++. +|+||+|+.+. +
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDDG 81 (123)
T ss_pred eEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhcccccccC
Confidence 46778888888899999999999998753 36899999999999999999976664 89999999762 4
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 733 ~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+++++|+|+||++||.||+.+++||.+++++.|+.||+..
T Consensus 82 ~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 82 IFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 7899999999999999999999999999999999999864
No 23
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.77 E-value=1.4e-18 Score=170.72 Aligned_cols=104 Identities=21% Similarity=0.340 Sum_probs=90.1
Q ss_pred EEEecceEEec------CCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCC--C
Q 001221 668 CEVLGANIVKS------DSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLST--G 733 (1121)
Q Consensus 668 a~I~g~~~~~~------~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~--~ 733 (1121)
+.|.+++...+ +++.|++|.|+++.+. ...|.|+|||+||..||.+|+ +||+. +|++|+|.++.+ +
T Consensus 2 i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~ 81 (120)
T cd06865 2 ITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVM 81 (120)
T ss_pred eEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCcccccccc
Confidence 45566666544 4589999999998752 478999999999999999999 58985 899999998733 3
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 734 ~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
++++|+|+||++||.||+.|+.+|.++++++|..||+.
T Consensus 82 ~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 82 QSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 69999999999999999999999999999999999975
No 24
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.77 E-value=1.6e-18 Score=171.03 Aligned_cols=105 Identities=23% Similarity=0.422 Sum_probs=91.5
Q ss_pred EEEEecceEEecCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHHc-cc--cC-CCCCCCccccCC------
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-FQ--EY-NLHLPPKHFLST------ 732 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk~-~p--~~-~p~LP~K~~~~~------ 732 (1121)
.+.|.+++..++|.++|++|.|+++.. ....|.|.|||+||..||.+|++ |+ +. +|++|+|+++..
T Consensus 2 ~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~~ 81 (124)
T cd07282 2 EIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVG 81 (124)
T ss_pred EEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCccccccccccc
Confidence 456778888888889999999999753 24689999999999999999994 76 43 799999997621
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 733 ---GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 733 ---~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+++++|+|+||.+||.||+.|+++|.+++++.|+.||+.
T Consensus 82 ~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 82 KEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 358999999999999999999999999999999999985
No 25
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.77 E-value=1.8e-18 Score=170.91 Aligned_cols=106 Identities=21% Similarity=0.424 Sum_probs=92.4
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc-ccc--C-CCCCCCccccC------
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE--Y-NLHLPPKHFLS------ 731 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~-~p~--~-~p~LP~K~~~~------ 731 (1121)
|.+.|.++++.++|+++|++|.|.++.+. ...|.|.|||+||..||.+|++ |+. . .|++|+|+++.
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 35778888989899999999999998642 4689999999999999999994 753 3 78999998762
Q ss_pred ---CCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 732 ---TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 732 ---~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
.+++.+|+|+||.+||.||+.|+++|.++.+++|.+||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 1358999999999999999999999999999999999975
No 26
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.76 E-value=2.5e-18 Score=169.51 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=95.9
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHccccC-CCCCCCcccc--------CC
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHFL--------ST 732 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~~p~~-~p~LP~K~~~--------~~ 732 (1121)
|.+.|.++....+|++.|++|.|++..+. ...|.|.|||+||..||.+|++.|+. .|+||+|+++ .+
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDDG 81 (123)
T ss_pred eEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceecccccccccC
Confidence 56778889999999999999999997542 46899999999999999999966764 8999999975 26
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 733 ~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+++.+|+|+||++|+.||+.|++||.+++++.+..||+..
T Consensus 82 ~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 82 IFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 7899999999999999999999999999999999999876
No 27
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.76 E-value=1.6e-18 Score=170.46 Aligned_cols=102 Identities=20% Similarity=0.358 Sum_probs=92.9
Q ss_pred EEEEecceEEe--cCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHH
Q 001221 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQER 742 (1121)
Q Consensus 667 ~a~I~g~~~~~--~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekR 742 (1121)
.|.|.+++... +|+++|++|.|.+.. ..|.|.|||+||..||.+|. .||+. +|++|+|+.+ ++++++||++|
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~---~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~-g~f~~~FIe~R 77 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPSH---TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT-GRFEEDFISKR 77 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEec---CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC-CCCCHHHHHHH
Confidence 46778887775 788999999998754 36999999999999999999 49986 8999999998 88999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 743 r~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
|++||.||+.|+.||.++.++.+..||+.+
T Consensus 78 r~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 78 RKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 999999999999999999999999999976
No 28
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.76 E-value=1.8e-18 Score=170.71 Aligned_cols=103 Identities=24% Similarity=0.402 Sum_probs=92.6
Q ss_pred EEEEecceEEe--cCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHH
Q 001221 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQER 742 (1121)
Q Consensus 667 ~a~I~g~~~~~--~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekR 742 (1121)
+|.|.++.... .|+++|++|.|.+.. ..|.|.|||+||..||.+|+ +||+. +|+||+|+++ ++++.+|+++|
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~-~~~~~~fie~R 77 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH---TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT-GRFEEDFIEKR 77 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec---CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc-cCCCHHHHHHH
Confidence 46677777654 577899999999864 47999999999999999999 58885 8999999988 78999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 743 r~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
|.+||.||+.|+++|.+++++.|.+||+..+
T Consensus 78 r~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 78 RERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 9999999999999999999999999999874
No 29
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.76 E-value=2.4e-18 Score=168.14 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=93.2
Q ss_pred EEEEecceEEecCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCcccc---CCCCChH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFL---STGLDVS 737 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~---~~~~~~~ 737 (1121)
.+.|.+++...++.+.|++|.|+++.. +...|.|.|||+||..||.+|. +||+. +|+||+|+.+ .++++++
T Consensus 2 ~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~ 81 (116)
T cd06860 2 FITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSPE 81 (116)
T ss_pred EEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCHH
Confidence 456778888778889999999998854 2568999999999999999999 58885 8999999974 2568999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 738 flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
|+|+||++||.||+.|++||.++++++|+.||+.
T Consensus 82 fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 82 FVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999999999999999985
No 30
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.76 E-value=3.1e-18 Score=167.93 Aligned_cols=106 Identities=27% Similarity=0.409 Sum_probs=92.9
Q ss_pred EEEEEecceEEe-cCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCcccc----CCCC
Q 001221 666 LRCEVLGANIVK-SDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFL----STGL 734 (1121)
Q Consensus 666 i~a~I~g~~~~~-~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~----~~~~ 734 (1121)
|.+.|.++.... ++++.|++|.|.|..+. ...|.|.|||+||..||+.|+ .||+. +|+||+|+.+ .+++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 356778887765 67889999999997653 257999999999999999999 59985 8999999965 2468
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 735 ~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+.+|+|+||++||.||+.|+++|.++.|++|..||+.
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 9999999999999999999999999999999999975
No 31
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.76 E-value=3.6e-18 Score=166.11 Aligned_cols=104 Identities=31% Similarity=0.453 Sum_probs=90.9
Q ss_pred EEEecceEEecCCCceEEEEEEEEe-c--CCCeeEEEeccchHHHHHHHHH-cccc-C-CCCCCCccccCCCCChHHHHH
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTD-S--NNNSWSIKRRFRHFEELHRRLK-FFQE-Y-NLHLPPKHFLSTGLDVSVIQE 741 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~-~--~~~~w~V~RRYsdF~~Lh~~Lk-~~p~-~-~p~LP~K~~~~~~~~~~flek 741 (1121)
.+|.++..+..++++|++|.|.|.. + ....|.|.||||||.+||..|+ +|+. . .|+||+|+++ ++++++||++
T Consensus 3 ~~i~~~~~~~~~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~-~~~~~~~ie~ 81 (114)
T cd07300 3 FEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT-GNFSEEIIAE 81 (114)
T ss_pred EEecCceeeccCCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc-CCCCHHHHHH
Confidence 3566777777778899999998743 2 2468999999999999999998 5765 3 6889999998 8999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 742 Rr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
||.+||.||+.|+++|.++.++.+.+||...
T Consensus 82 Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 82 RRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 9999999999999999999999999999875
No 32
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.75 E-value=3.3e-18 Score=164.40 Aligned_cols=100 Identities=27% Similarity=0.423 Sum_probs=89.3
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChHHHHHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQERC 743 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~flekRr 743 (1121)
+++.|.++..+.+++++|++|.|.+.. .|.|.||||||+.||.+|++ |+.. .|+||+|+++ + ++.+++|+||
T Consensus 4 ~~i~Ip~~~~~~~~~~~yvvY~I~~~~----~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~-~-~~~~~ie~Rr 77 (106)
T cd06886 4 VPISIPDYKHVEQNGEKFVVYNIYMAG----RQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPF-S-LSEQQLDARR 77 (106)
T ss_pred ceEecCCcceEcCCCCcEEEEEEEEcC----CEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcC-C-CCHHHHHHHH
Confidence 567777777777778899999998863 69999999999999999995 7774 7999999987 3 7899999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 744 ~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
.+||.||+.|+++|.+++|+.|.+||+.
T Consensus 78 ~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 78 RGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999974
No 33
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.75 E-value=3.6e-18 Score=169.72 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=88.2
Q ss_pred EEEecceEEecC-----CCceEEEEEEEEecC--------CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCcccc--
Q 001221 668 CEVLGANIVKSD-----SRTFAVYAIAVTDSN--------NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFL-- 730 (1121)
Q Consensus 668 a~I~g~~~~~~~-----~k~y~vY~I~V~~~~--------~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~-- 730 (1121)
..|.+++...+| +++|++|.|+|+... ...|.|+|||+||..||.+|+ .||.. .|+||+|+++
T Consensus 3 i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~ 82 (129)
T cd06864 3 ITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFM 82 (129)
T ss_pred eEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceecc
Confidence 345555554443 359999999999653 247999999999999999999 48885 8999999863
Q ss_pred -----CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 731 -----STGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 731 -----~~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
.++++++|+|+||++||.||+.|+++|.+++|++|.+||+.
T Consensus 83 ~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 83 WQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTH 128 (129)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCC
Confidence 25789999999999999999999999999999999999975
No 34
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.75 E-value=4.5e-18 Score=164.32 Aligned_cols=103 Identities=27% Similarity=0.418 Sum_probs=88.8
Q ss_pred EEEecceEEecCCCceEEEEEEEEecC-CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHH
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~~~-~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
+.|+|.+... +...|++|.|.|++.+ +..|.|+|||+||++||++|+ .||.. .|+||+|+++..+.+.+++++|+.
T Consensus 2 ~~i~~~~~~~-~~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~~ 80 (109)
T cd06883 2 VSVFGFQKRY-SPEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRKI 80 (109)
T ss_pred cEEEEEEEEe-cCCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHHH
Confidence 4577775443 4467999999999875 578999999999999999999 58875 789999998844567799999999
Q ss_pred HHHHHHHHhhcC-CCCCCChhhhccccc
Q 001221 745 LLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1121)
Q Consensus 745 ~Le~YLq~LL~~-p~l~~s~~l~~FL~~ 771 (1121)
+||.||+.|++. +.+++|+.|++||.+
T Consensus 81 ~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 81 ELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 999999999998 589999999999976
No 35
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.75 E-value=5.4e-18 Score=165.30 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=93.0
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccC---CCCChH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLS---TGLDVS 737 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~---~~~~~~ 737 (1121)
.+.|.++....+|+++|++|.|+++.+. ...|.|.|||+||..||+.|. .+|+. +|+||+|+++. ++++++
T Consensus 2 ~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~ 81 (116)
T cd07283 2 FVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEE 81 (116)
T ss_pred EEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHH
Confidence 4677888888888899999999998652 358999999999999999999 58885 89999998652 457899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 738 flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
|+|+||++||.||+.|++||.++.++++..||..
T Consensus 82 fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 82 FVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999999999999999975
No 36
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.75 E-value=5e-18 Score=163.78 Aligned_cols=100 Identities=26% Similarity=0.435 Sum_probs=87.5
Q ss_pred EEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccC-CCCChHHHHHHHH
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLS-TGLDVSVIQERCK 744 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~-~~~~~~flekRr~ 744 (1121)
+.|.+.... ++.|++|.|+|+.. +..|.|+||||||.+||++|++ ++.. .|+||+|+++. ++++++++|+||.
T Consensus 3 v~ip~~~~~---~~~~~~Y~I~v~~~-~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ie~Rr~ 78 (108)
T cd06897 3 ISIPTTSVS---PKPYTVYNIQVRLP-LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKLVEERRV 78 (108)
T ss_pred EEcCCeEEc---CCCeEEEEEEEEcC-CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHHHHHHHH
Confidence 344444333 57899999999987 7899999999999999999995 7775 78999999882 2899999999999
Q ss_pred HHHHHHHHhhcCC--CCCCChhhhccccc
Q 001221 745 LLDRYLKMLLQLP--TVSGSIEVWDFLSV 771 (1121)
Q Consensus 745 ~Le~YLq~LL~~p--~l~~s~~l~~FL~~ 771 (1121)
+||.||+.|+++| .+++|+++++||+.
T Consensus 79 ~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 79 GLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred HHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 9999999999999 99999999999975
No 37
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.75 E-value=7.6e-18 Score=163.03 Aligned_cols=100 Identities=23% Similarity=0.472 Sum_probs=86.7
Q ss_pred EEEEecceEEec-CCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHHHHHHH
Q 001221 667 RCEVLGANIVKS-DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 667 ~a~I~g~~~~~~-~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
.+.|.....+.+ +++.|++|.|+|..+ +..|.|.||||||++||++|++ |+ .|+||+|++ ++++++|+++||.
T Consensus 2 ~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~-~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P~K~~--~~~~~~~ie~Rr~ 76 (110)
T cd06880 2 EVSIPSYRLEVDESEKPYTVFTIEVLVN-GRRHTVEKRYSEFHALHKKLKKSIK--TPDFPPKRV--RNWNPKVLEQRRQ 76 (110)
T ss_pred EEEeCcEEEeeCCCCCCeEEEEEEEEEC-CeEEEEEccHHHHHHHHHHHHHHCC--CCCCCCCCc--cCCCHHHHHHHHH
Confidence 455656555544 358999999999987 6699999999999999999995 66 789999997 4689999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 745 ~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+||.||+.|+.+|. .+.+|.+||+..+
T Consensus 77 ~Le~yL~~ll~~~~--~s~~l~~FL~~~~ 103 (110)
T cd06880 77 GLEAYLQGLLKINE--LPKQLLDFLGVRH 103 (110)
T ss_pred HHHHHHHHHHcCcc--ccHHHHHHhCCCC
Confidence 99999999999998 5899999999874
No 38
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.74 E-value=1.6e-17 Score=165.09 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=96.0
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHccccC-CCCCCCcccc--------CC
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHFL--------ST 732 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~~p~~-~p~LP~K~~~--------~~ 732 (1121)
|...|.+++.+.+|.+.|++|.|.++.+. ...|.|.|||+||..||++|++.++. +|+||+|+++ .+
T Consensus 4 ~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~~~~ 83 (132)
T cd07294 4 LEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEG 83 (132)
T ss_pred EEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceecccccccccc
Confidence 56778899999999999999999987542 36899999999999999999976664 8999999963 13
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 733 ~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+++++|+|+||++||.||+.|++||.+++++.|+.||+.+.
T Consensus 84 ~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~ 124 (132)
T cd07294 84 IFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDET 124 (132)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCC
Confidence 68999999999999999999999999999999999999884
No 39
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.73 E-value=1e-17 Score=164.49 Aligned_cols=104 Identities=22% Similarity=0.358 Sum_probs=91.8
Q ss_pred EEEEecceEEe--cCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-cccc-C-CCCCCCccccCCCCChHHHHH
Q 001221 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQE-Y-NLHLPPKHFLSTGLDVSVIQE 741 (1121)
Q Consensus 667 ~a~I~g~~~~~--~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~-~-~p~LP~K~~~~~~~~~~flek 741 (1121)
.|.|.+++... .|.++|++|.|..+.. .|.|.||||||..||.+|. +|+. . +|++|+|+++ ++++++||++
T Consensus 2 ~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~~---~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~-g~f~~~FIe~ 77 (126)
T cd07285 2 DCVVADPRKGSKMYGLKSYIEYQLTPTNT---NRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT-GRFEEEFIKM 77 (126)
T ss_pred EEEEcCcccccCCCCCcCeEEEEEEeccC---CeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc-CCCCHHHHHH
Confidence 35677777654 5679999999988753 6999999999999999999 5864 3 8999999988 8899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhhcccccccc
Q 001221 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1121)
Q Consensus 742 Rr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~~ 774 (1121)
||.+||.||+.|++||.++.++.|..||+.+++
T Consensus 78 Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 78 RMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence 999999999999999999999999999998753
No 40
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.73 E-value=1.2e-17 Score=160.25 Aligned_cols=87 Identities=24% Similarity=0.335 Sum_probs=81.0
Q ss_pred CceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 001221 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPT 758 (1121)
Q Consensus 681 k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~~p~ 758 (1121)
..|++|.|++.. ..|.|+||||||..||.+|+ +||.. .|+||+|+++ ++++.+|+++||.+||.||+.|+++|.
T Consensus 16 ~~y~~Y~i~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~-~~~~~~~ie~Rr~~Le~fL~~l~~~p~ 91 (105)
T cd06866 16 LKHVEYEVSSKR---FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIG-GSADREFLEARRRGLSRFLNLVARHPV 91 (105)
T ss_pred cCCEEEEEEEec---CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccc-cCCCHHHHHHHHHHHHHHHHHHhcChh
Confidence 489999999875 47999999999999999999 58874 8999999998 789999999999999999999999999
Q ss_pred CCCChhhhccccc
Q 001221 759 VSGSIEVWDFLSV 771 (1121)
Q Consensus 759 l~~s~~l~~FL~~ 771 (1121)
+++++.|.+||+.
T Consensus 92 l~~s~~l~~FL~~ 104 (105)
T cd06866 92 LSEDELVRTFLTE 104 (105)
T ss_pred hccChHHHhhcCC
Confidence 9999999999975
No 41
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.73 E-value=1.7e-17 Score=161.79 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=93.9
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccC---CCCCh
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLS---TGLDV 736 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~---~~~~~ 736 (1121)
|.+.|.+++...+|.+.|+.|.|.++.+. ...|.|.|||+||..||..|. .||+. +|++|+|+++. +++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 35678888888888999999999998652 468999999999999999999 58886 89999998652 34689
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 737 ~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+|+|+||++||.||+.|+.||.++.+++++.||+.
T Consensus 81 ~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 99999999999999999999999999999999974
No 42
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.73 E-value=9.2e-18 Score=167.09 Aligned_cols=107 Identities=25% Similarity=0.452 Sum_probs=90.1
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecC---------------CCeeEEEeccchHHHHHHHHHcccc---C-CCCCC
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN---------------NNSWSIKRRFRHFEELHRRLKFFQE---Y-NLHLP 725 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~---------------~~~w~V~RRYsdF~~Lh~~Lk~~p~---~-~p~LP 725 (1121)
.|.-.|++++.+++|++.|++|.|++.... ...|.|.||||||..||.+|++.+. . .+++|
T Consensus 3 ~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P 82 (132)
T cd06893 3 RIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGP 82 (132)
T ss_pred cccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCC
Confidence 355567888999999999999999985421 3589999999999999999996432 2 35677
Q ss_pred Ccccc---CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 726 PKHFL---STGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 726 ~K~~~---~~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+|.+. .++++++|||+||.+||.||+.|+++|.++.+++|++||+.
T Consensus 83 ~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 83 PKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 77752 27899999999999999999999999999999999999974
No 43
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.73 E-value=1.2e-17 Score=163.08 Aligned_cols=103 Identities=25% Similarity=0.431 Sum_probs=87.5
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
++.|......++|++.|++|.|+|+.+ +..|.|+||||||++||++|+ +||.. .|+||+|+++ ++++.+|+|+||.
T Consensus 2 ~v~IPs~~~~g~~~~~y~vY~I~v~~~-~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~-g~~~~~~ie~Rr~ 79 (118)
T cd07277 2 NVWIPSVFLRGKGSDAHHVYQVYIRIR-DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAI-GNKDAKFVEERRK 79 (118)
T ss_pred EEEcCcEEEecCCCCCEEEEEEEEEEC-CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCcc-CCCCHHHHHHHHH
Confidence 455555556667889999999999887 679999999999999999999 48774 7899999998 7899999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 745 ~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+||.||+.|+.+ .+..++.+.+||+..
T Consensus 80 ~Le~yL~~ll~~-~~~~~~~~~~~~~~~ 106 (118)
T cd07277 80 RLQVYLRRVVNT-LIQTSPELTACPSKE 106 (118)
T ss_pred HHHHHHHHHHHH-HHHhCchhhcCCCHH
Confidence 999999999997 455666677777654
No 44
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.71 E-value=3.2e-17 Score=160.48 Aligned_cols=101 Identities=19% Similarity=0.298 Sum_probs=86.9
Q ss_pred EEEEecceEEecCCCceEEEEEEEEec------CCCeeEEEeccchHHHHHHHHHc-ccc-----CCCCCCCccccCCCC
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDS------NNNSWSIKRRFRHFEELHRRLKF-FQE-----YNLHLPPKHFLSTGL 734 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~------~~~~w~V~RRYsdF~~Lh~~Lk~-~p~-----~~p~LP~K~~~~~~~ 734 (1121)
+..|.++... ++.|++|.|.+... +...|.|.||||||..||++|++ |+. ..|+||+|+++ +++
T Consensus 4 ~~~V~d~~~~---~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~-g~~ 79 (117)
T cd06881 4 SFTVTDTRRH---KKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF-GRF 79 (117)
T ss_pred EEEecCccee---cCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc-CCC
Confidence 3456676655 35799999999842 13589999999999999999994 653 36899999999 899
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 735 ~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+++||++||.+||.||+.|+++|.++.++++.+||+.
T Consensus 80 ~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 80 DAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 9999999999999999999999999999999999974
No 45
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.71 E-value=5.2e-17 Score=156.96 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=91.1
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCC-CeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERC 743 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~-~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr 743 (1121)
.+.|.|.+.. .+.+.|++|.|+|++.++ ..|.|+|||+||.+||.+|+ +||.. .|+||+|.+++++.++++.|+|+
T Consensus 3 ~v~v~~~~kr-~~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~ 81 (111)
T cd06884 3 RVTVVGFQKR-YDPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRK 81 (111)
T ss_pred EEEEEEEEEE-ecCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHH
Confidence 5778877653 356889999999987655 78999999999999999999 59974 78899998885667889999999
Q ss_pred HHHHHHHHHhhcC-CCCCCChhhhccccc
Q 001221 744 KLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1121)
Q Consensus 744 ~~Le~YLq~LL~~-p~l~~s~~l~~FL~~ 771 (1121)
.+||.||+.|++. |.+++|+.|+.||.+
T Consensus 82 ~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 82 QDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 9999999999996 789999999999975
No 46
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.70 E-value=4.1e-17 Score=160.03 Aligned_cols=92 Identities=22% Similarity=0.392 Sum_probs=81.6
Q ss_pred ecCCCceEEEEEEEEecC----C--------CeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChHHHHHH
Q 001221 677 KSDSRTFAVYAIAVTDSN----N--------NSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQER 742 (1121)
Q Consensus 677 ~~~~k~y~vY~I~V~~~~----~--------~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~flekR 742 (1121)
+++.+.|++|.|.|.... + ..|.|.||||||+.||++|++ ||+. .|+||+|+++ + +.+|+++|
T Consensus 14 ~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~-~--~~~~ie~R 90 (120)
T cd06868 14 GKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF-V--SESDIRER 90 (120)
T ss_pred CCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc-C--CHHHHHHH
Confidence 346789999999987531 1 279999999999999999994 8885 8999999988 4 89999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 743 r~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
|.+||.||+.|+++|.+++|++|.+||..
T Consensus 91 r~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 91 RAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred HHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 99999999999999999999999999975
No 47
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.70 E-value=5.2e-17 Score=158.58 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=84.9
Q ss_pred EEEecceEEecCCCceEEEEEEEEecC--C----CeeEEEeccchHHHHHHHHHc-ccc------CCCCCCCccccCCCC
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTDSN--N----NSWSIKRRFRHFEELHRRLKF-FQE------YNLHLPPKHFLSTGL 734 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~~~--~----~~w~V~RRYsdF~~Lh~~Lk~-~p~------~~p~LP~K~~~~~~~ 734 (1121)
..|.+++..+ +.|++|.|++.... . ..|.|+||||||..||+.|++ |+. ..|++|+|+++ +++
T Consensus 5 ~~V~dp~~~~---~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~-g~~ 80 (118)
T cd07287 5 YTVTDPRRHP---KGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF-GRF 80 (118)
T ss_pred EEecCCeEcC---CCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee-cCC
Confidence 4566776553 34999999886432 1 479999999999999999994 653 26899999998 899
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 735 ~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+++|||+||.+||.||+.|.++|.++++.+|.+||..
T Consensus 81 d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 81 DESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 9999999999999999999999999999999999964
No 48
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.70 E-value=3.8e-17 Score=156.58 Aligned_cols=96 Identities=24% Similarity=0.393 Sum_probs=83.7
Q ss_pred EecceEEec-CCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHHHH
Q 001221 670 VLGANIVKS-DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCKLL 746 (1121)
Q Consensus 670 I~g~~~~~~-~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~~L 746 (1121)
|.+++...+ ++++|++|.|.|+ ..|.+.||||||..||.+|+ +|+.. .|+||+|+++ + ++.+|+|+||.+|
T Consensus 4 I~~~~~~~~~~~~~y~~Y~I~v~----~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~-~-~~~~~ie~Rr~~L 77 (104)
T cd06885 4 IPDTQELSDEGGSTYVAYNIHIN----GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLL-P-LTPAQLEERRLQL 77 (104)
T ss_pred cCCcceeccCCCCcEEEEEEEEC----CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccc-c-CCHHHHHHHHHHH
Confidence 444444433 7899999999985 25899999999999999999 48874 8999999987 3 7889999999999
Q ss_pred HHHHHHhhcCCCCCCChhhhccccc
Q 001221 747 DRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 747 e~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
|.||+.|+++|.++.++.+.+||..
T Consensus 78 e~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 78 EKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHHHHhcChhhccCHHHHHHHHh
Confidence 9999999999999999999999975
No 49
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.69 E-value=1.2e-16 Score=158.12 Aligned_cols=97 Identities=21% Similarity=0.428 Sum_probs=83.8
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
.+.|.+......|.++|++|.|+|+.. +..|.|+||||||.+||++|+ .||.. .|+||+|++| ++++++|+|+||.
T Consensus 2 ~i~Ip~~~~~~~~~~~y~vY~I~v~~~-~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~-g~~~~~~ie~Rr~ 79 (127)
T cd06874 2 KITIPRYVLRGQGKDEHFEFEVKITVL-DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLF-GNKSERVAKERRR 79 (127)
T ss_pred EEEECCeEEecCCCCcEEEEEEEEEEC-CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceec-CCCCHHHHHHHHH
Confidence 455666555556788999999999986 568999999999999999999 48874 7889999999 7899999999999
Q ss_pred HHHHHHHHhhcC-CCCCCChhh
Q 001221 745 LLDRYLKMLLQL-PTVSGSIEV 765 (1121)
Q Consensus 745 ~Le~YLq~LL~~-p~l~~s~~l 765 (1121)
+||.||+.|++. +.+..|+.+
T Consensus 80 ~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 80 QLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHhchhccCCccc
Confidence 999999999986 778888755
No 50
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.68 E-value=1.8e-16 Score=154.85 Aligned_cols=105 Identities=30% Similarity=0.360 Sum_probs=89.8
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc----------CCCCCCCccccCCCCC
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGLD 735 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~----------~~p~LP~K~~~~~~~~ 735 (1121)
.|.|.|.+.... ..+|.+|.|+|++.++..|.|+|||+||++||.+|++ ||. .+|.||+|.+++++..
T Consensus 3 ~~~v~~~ekr~~-~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~ 81 (119)
T cd06888 3 DVKVIDVEKRRA-PSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHI 81 (119)
T ss_pred eEEEEEEEEEec-CCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchh
Confidence 467888776654 4566699999999888999999999999999999994 885 2788999999844456
Q ss_pred hHHHHHHHHHHHHHHHHhhcCC-CCCCChhhhcccccc
Q 001221 736 VSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSVD 772 (1121)
Q Consensus 736 ~~flekRr~~Le~YLq~LL~~p-~l~~s~~l~~FL~~~ 772 (1121)
.++.++|+..|+.||+.|+..| .+++|+.|+.|+.+.
T Consensus 82 ~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p~ 119 (119)
T cd06888 82 RDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEAK 119 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCCC
Confidence 7899999999999999999985 588999999999863
No 51
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.68 E-value=1.4e-16 Score=155.72 Aligned_cols=100 Identities=15% Similarity=0.293 Sum_probs=85.2
Q ss_pred EEEecceEEecCCCceEEEEEEEEec------CCCeeEEEeccchHHHHHHHHHc-ccc------CCCCCCCccccCCCC
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTDS------NNNSWSIKRRFRHFEELHRRLKF-FQE------YNLHLPPKHFLSTGL 734 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~~------~~~~w~V~RRYsdF~~Lh~~Lk~-~p~------~~p~LP~K~~~~~~~ 734 (1121)
..|.++..+++ .|++|.|.+... +...|.|+||||||..||+.|.+ +++ ..|++|+|+++ +++
T Consensus 5 ~~V~dp~~~~~---gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~-g~f 80 (118)
T cd07288 5 YSVTDPRTHPK---GYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF-GRF 80 (118)
T ss_pred EEecCCcCcCC---CcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee-ccC
Confidence 45677765544 499999997642 13589999999999999999993 533 27999999998 789
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 735 ~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+++|||+||.+||.||+.|.++|.++++++|.+||+.
T Consensus 81 ~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 81 EAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 9999999999999999999999999999999999974
No 52
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.67 E-value=2.9e-16 Score=153.72 Aligned_cols=87 Identities=28% Similarity=0.365 Sum_probs=79.1
Q ss_pred cCCCceEEEEEEEEecCC--CeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 001221 678 SDSRTFAVYAIAVTDSNN--NSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKML 753 (1121)
Q Consensus 678 ~~~k~y~vY~I~V~~~~~--~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~L 753 (1121)
.+++.|++|.|+|+..++ ..|.|+|||+||.+||++|+ +||.. +|+||+|+. .++|+||.+||.||+.|
T Consensus 28 ~~~~~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~-------~~~E~Rr~~Le~yL~~L 100 (119)
T cd06869 28 NRSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK-------LPREKLRLSLRQYLRSL 100 (119)
T ss_pred cCCCceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch-------hHHHHHHHHHHHHHHHH
Confidence 356789999999999865 69999999999999999999 59985 889999987 37899999999999999
Q ss_pred hcCCCCCCChhhhccccc
Q 001221 754 LQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 754 L~~p~l~~s~~l~~FL~~ 771 (1121)
+++|.+++|+++.+||..
T Consensus 101 l~~p~l~~s~~~~~FL~~ 118 (119)
T cd06869 101 LKDPEVAHSSILQEFLTS 118 (119)
T ss_pred hcChhhhcChHHHHhhCC
Confidence 999999999999999975
No 53
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.66 E-value=2.8e-16 Score=155.61 Aligned_cols=91 Identities=27% Similarity=0.400 Sum_probs=81.2
Q ss_pred CCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 001221 680 SRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKML 753 (1121)
Q Consensus 680 ~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~L 753 (1121)
+..-++|.|+|.... ...|.|.||||||..||++|+ +|+.. .|++|+|+++ ++++++|+|+||.+||.||+.|
T Consensus 41 ~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l-~~~~~~fiEeRR~gLE~fLq~L 119 (138)
T cd06879 41 NAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLL-RMKNRALLEERRHSLEEWMGKL 119 (138)
T ss_pred CCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccc-cCCCHHHHHHHHHHHHHHHHHH
Confidence 344578999998752 248999999999999999999 58874 8889999998 7899999999999999999999
Q ss_pred hcCCCCCCChhhhccccc
Q 001221 754 LQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 754 L~~p~l~~s~~l~~FL~~ 771 (1121)
+++|.++.++.+.+||+.
T Consensus 120 l~~p~l~~s~~v~~FLel 137 (138)
T cd06879 120 LSDIDLSRSVPVASFLEL 137 (138)
T ss_pred HcCccccCCHHHHHHhCC
Confidence 999999999999999985
No 54
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.65 E-value=4.3e-16 Score=156.38 Aligned_cols=106 Identities=26% Similarity=0.479 Sum_probs=87.9
Q ss_pred eeEEEEEecceEEecC--CCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHcc-ccC--------------------
Q 001221 664 FKLRCEVLGANIVKSD--SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFF-QEY-------------------- 720 (1121)
Q Consensus 664 ~~i~a~I~g~~~~~~~--~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~~-p~~-------------------- 720 (1121)
..++|.|++.+....+ ...|++|.|+|+.+ +..|.|+|||+||.+||++|+.+ +..
T Consensus 2 ~~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g-~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~ 80 (140)
T cd06895 2 EPIKARITDVERSGTTRHLLNPNLYTIELQHG-QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSR 80 (140)
T ss_pred CCcEEEEeEEeccCCCCCCCceEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhcccccc
Confidence 3578999987765543 57889999999987 68999999999999999999974 322
Q ss_pred ----------CCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 721 ----------NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 721 ----------~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+|.||.|... . .+++++++|+++||.||+.||.+|.+++++++.+||+.+
T Consensus 81 ~~~~~~~~~~lP~lP~~~~~-~-~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 81 KPEREKKNRRLPSLPALPDI-L-VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred ccccccccccCCCCCCcccc-c-cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 3445555543 2 378999999999999999999999999999999999864
No 55
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.65 E-value=5.3e-16 Score=152.89 Aligned_cols=108 Identities=29% Similarity=0.596 Sum_probs=88.1
Q ss_pred eeEEEEEecceEEecC----CCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHccccC-CCCCCCccc---------
Q 001221 664 FKLRCEVLGANIVKSD----SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHF--------- 729 (1121)
Q Consensus 664 ~~i~a~I~g~~~~~~~----~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~~p~~-~p~LP~K~~--------- 729 (1121)
.+|+|+|++.+..... ...|++|.|+|+.+ ..+|.|+|||+||.+||+.|..|... .++||+|++
T Consensus 2 ~~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g-~~~w~V~rRy~~F~~Lh~~L~~~~~~~~~plP~k~~~~~r~~~~~ 80 (135)
T cd07296 2 CPIKARVLEVERFTSTSDVKKPSLNVYTIELTHG-EFTWQVKRKFKHFQELHRELLRYKAFIRIPIPTRSHTVRRQTIKR 80 (135)
T ss_pred CceEEEEEEEEEeeccccccccceEEEEEEEEeC-CEEEEEEeehHHHHHHHHHHHhcCCCCCCCCCcccchhhcccccc
Confidence 4799999998875433 45799999999976 67999999999999999999986554 567899887
Q ss_pred --------cCCCCChHHHH----HHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 730 --------LSTGLDVSVIQ----ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 730 --------~~~~~~~~fle----kRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
|....+....| +||++||+||+.||.+|.+++++++.+||+.+
T Consensus 81 ~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeVs 135 (135)
T cd07296 81 GEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDVS 135 (135)
T ss_pred ccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheecC
Confidence 32122222344 89999999999999999999999999999864
No 56
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.65 E-value=6.5e-16 Score=147.81 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=85.1
Q ss_pred EEEecceEEecCCCceEEEEEEEEecCCC--eeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChHHHHHHH
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNN--SWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQERC 743 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~~~~~--~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~flekRr 743 (1121)
|.|.|.+..... ..|.+|.|+|++.++. .| |+|||+||++||++|++ ||.. +|.||+|.+++++..++..|+|+
T Consensus 2 ~~V~~f~Kr~~p-~k~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~ 79 (109)
T cd07289 2 VSVFTYHKRYNP-DKHYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRK 79 (109)
T ss_pred cEEeeEEEEEcC-CCeEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHH
Confidence 457776654433 4456999999997653 55 99999999999999995 8874 89999999884455679999999
Q ss_pred HHHHHHHHHhhcC-CCCCCChhhhccccc
Q 001221 744 KLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1121)
Q Consensus 744 ~~Le~YLq~LL~~-p~l~~s~~l~~FL~~ 771 (1121)
.+|+.||+.|++. +.+++|+.|+.|+.+
T Consensus 80 ~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 80 VELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 9999999999987 579999999999875
No 57
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.64 E-value=1.4e-15 Score=148.21 Aligned_cols=103 Identities=28% Similarity=0.393 Sum_probs=88.8
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-cccc----------CCCCCCCccccCCCCC
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQE----------YNLHLPPKHFLSTGLD 735 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~----------~~p~LP~K~~~~~~~~ 735 (1121)
.+.|+|.+... ..+.|++|.|.|...++..|.|+|||+||++||.+|+ .||. .+|.||+|.++ ++.
T Consensus 3 ~~~~~~~~kr~-~~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~-~~~- 79 (118)
T cd06887 3 HIALLGFEKRF-VPSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF-DGQ- 79 (118)
T ss_pred eEEEEEEEEee-cCCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc-Ccc-
Confidence 46778777554 4568999999999877889999999999999999999 4874 27999999998 432
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-CCCCCChhhhccccccc
Q 001221 736 VSVIQERCKLLDRYLKMLLQL-PTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 736 ~~flekRr~~Le~YLq~LL~~-p~l~~s~~l~~FL~~~~ 773 (1121)
++.|+|+.+||.||+.|+.. +.+++|++++.||.+.+
T Consensus 80 -~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~~ 117 (118)
T cd06887 80 -RAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVRP 117 (118)
T ss_pred -hHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcCC
Confidence 99999999999999999875 57999999999999874
No 58
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.62 E-value=2.3e-15 Score=143.00 Aligned_cols=102 Identities=37% Similarity=0.640 Sum_probs=91.2
Q ss_pred EEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc-CCCCCCCccccCCCCChHHHHHHHHH
Q 001221 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKL 745 (1121)
Q Consensus 668 a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~-~~p~LP~K~~~~~~~~~~flekRr~~ 745 (1121)
+.|.+.....++++.+++|.|.|+...+..|.|+|||+||.+||+.|++ ++. ..|+||+|.++ ++.+.+++++|+.+
T Consensus 2 i~I~~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~-~~~~~~~~~~R~~~ 80 (106)
T cd06093 2 VSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLF-GNLDPEFIEERRKQ 80 (106)
T ss_pred EEeCCceEEcCCCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCccc-ccCCHHHHHHHHHH
Confidence 4567777666678899999999998755899999999999999999995 775 48999999988 56799999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhhcccc
Q 001221 746 LDRYLKMLLQLPTVSGSIEVWDFLS 770 (1121)
Q Consensus 746 Le~YLq~LL~~p~l~~s~~l~~FL~ 770 (1121)
|+.||+.|+++|.+..++.+.+||+
T Consensus 81 L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 81 LEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred HHHHHHHHhcCcccccChHHHHHhC
Confidence 9999999999999999999999986
No 59
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.62 E-value=1.2e-15 Score=145.69 Aligned_cols=92 Identities=32% Similarity=0.557 Sum_probs=77.4
Q ss_pred CCCceEEEEEEEEecC-CCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccC--CCCChHHHHHHHHHHHHHHHHh
Q 001221 679 DSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLS--TGLDVSVIQERCKLLDRYLKML 753 (1121)
Q Consensus 679 ~~k~y~vY~I~V~~~~-~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~--~~~~~~flekRr~~Le~YLq~L 753 (1121)
|++.+++|.|.|+... ...|.|.|||+||.+||++|++ +|.. .|+||+|+++. ++.+++++++|+.+||.||+.|
T Consensus 8 ~~~~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l 87 (105)
T smart00312 8 GDGKHYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSL 87 (105)
T ss_pred CCCceEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3344555555555543 4789999999999999999995 8864 89999999873 2689999999999999999999
Q ss_pred hcCCCCCC-Chhhhcccc
Q 001221 754 LQLPTVSG-SIEVWDFLS 770 (1121)
Q Consensus 754 L~~p~l~~-s~~l~~FL~ 770 (1121)
+++|.++. |++|.+||+
T Consensus 88 ~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 88 LNHPELINESEVVLSFLE 105 (105)
T ss_pred HcCHhhhccChHHHHhcC
Confidence 99999999 999999985
No 60
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.60 E-value=5.9e-15 Score=141.38 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=82.2
Q ss_pred EecceEEecCCCceEEEEEEEEecCC-CeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCC-hHHHHHHHHH
Q 001221 670 VLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLD-VSVIQERCKL 745 (1121)
Q Consensus 670 I~g~~~~~~~~k~y~vY~I~V~~~~~-~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~-~~flekRr~~ 745 (1121)
+.|.+..-..+ +|.+|.|+|++.++ ..|.|+|||+||++||++|++ ||.. +|+||+|.++ +..+ ++..|+|+.+
T Consensus 4 ~~~~~kr~~p~-k~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~-g~s~~~~vae~R~~~ 81 (109)
T cd07290 4 LCRHESTFNPS-KGYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVI-GRSRGEAVAERRKEE 81 (109)
T ss_pred EeeeeEEecCC-CcEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCccc-CccccHHHHHHHHHH
Confidence 45555443444 45569999998754 459999999999999999995 9974 8999999988 4434 7999999999
Q ss_pred HHHHHHHhhcC-CCCCCChhhhccccc
Q 001221 746 LDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1121)
Q Consensus 746 Le~YLq~LL~~-p~l~~s~~l~~FL~~ 771 (1121)
|+.||+.|+.. |.+++|+.|++||.+
T Consensus 82 L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 82 LNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHcCChheecCHHHHHhccc
Confidence 99999998765 789999999999975
No 61
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.58 E-value=3.7e-15 Score=143.15 Aligned_cols=106 Identities=31% Similarity=0.556 Sum_probs=88.3
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecC-CCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCC--CCChHHH
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLST--GLDVSVI 739 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~-~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~--~~~~~fl 739 (1121)
-+.|.|++.+.. +++..++|.+.|+... ...|.|+|||+||.+||++|++ ++.. .|+||+|.++.. +.+.+++
T Consensus 3 ~~~v~v~~~~~~--~~~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~ 80 (113)
T PF00787_consen 3 IIQVSVVDPETS--GNKKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFI 80 (113)
T ss_dssp EEEEEEEEEEEE--SSSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHH
T ss_pred EEEEEEcCCEEE--cCCCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHH
Confidence 367888877666 4445566666666654 3799999999999999999995 7764 899999998732 4899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
++|+..|+.||+.|+++|.++.+++|..||+.+
T Consensus 81 ~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 81 EERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 999999999999999999999999999999864
No 62
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.56 E-value=1.9e-14 Score=139.83 Aligned_cols=99 Identities=24% Similarity=0.243 Sum_probs=85.0
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc--------C-CCCCCCccccCCCCCh
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE--------Y-NLHLPPKHFLSTGLDV 736 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~--------~-~p~LP~K~~~~~~~~~ 736 (1121)
+|.|.+.... ..+.+|.|+|+..++..|.|+|||+||++||.+|.+ ||. . +|.||++... +.+.
T Consensus 2 ~~~V~~~~~~----~~~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~--~~~~ 75 (112)
T cd06890 2 SASVESVLLE----DNRYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD--VVND 75 (112)
T ss_pred eEEEEEEEEE----CCEEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC--cchh
Confidence 4667765544 346899999999889999999999999999999994 873 1 6888887765 3688
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCCChhhhccccc
Q 001221 737 SVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSV 771 (1121)
Q Consensus 737 ~flekRr~~Le~YLq~LL~~p-~l~~s~~l~~FL~~ 771 (1121)
+++++|+.+|+.||+.|+..| .+.+|+.|++||.+
T Consensus 76 ~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 76 SISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 999999999999999999999 99999999999976
No 63
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.54 E-value=2.6e-14 Score=142.48 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=91.9
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecC----CCee-EEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCC
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSW-SIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLD 735 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w-~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~ 735 (1121)
.+.|.+.|.|.+.+++ .|+.|.+.|+.+- .... .|.|||+||..||++|. .++++ +|++|+|.+..+..+
T Consensus 27 ~~~l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~ 103 (140)
T cd06891 27 KYFLRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNN 103 (140)
T ss_pred CceEEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCC
Confidence 5679999999887654 7899999887542 3445 79999999999999999 58885 899999996546778
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 736 VSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 736 ~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
.+|+++||.+||.||+.++.||.+..+++|+.||+.
T Consensus 104 ~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 104 EEDARKLKANLQRWFNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhcc
Confidence 999999999999999999999999999999999975
No 64
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2e-14 Score=138.28 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=90.8
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHccc-c-CCCCCCCccccCCCCChHH
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQ-E-YNLHLPPKHFLSTGLDVSV 738 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~~p-~-~~p~LP~K~~~~~~~~~~f 738 (1121)
-+.+.|.++.+..++.+.|+-|.|.+..+. ...-.|.||||||+.||+.|+.-. . ..|+||+|.++.+.-..+|
T Consensus 17 fLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre~ 96 (144)
T KOG2527|consen 17 FLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFREF 96 (144)
T ss_pred eEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHHH
Confidence 466677777777778889999999998763 346689999999999999999643 4 4899999999833234599
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 739 IQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 739 lekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
||+||++||.||+.++.+|.+.++..|.-||...
T Consensus 97 IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~ 130 (144)
T KOG2527|consen 97 IEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE 130 (144)
T ss_pred HHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence 9999999999999999999998899999999765
No 65
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.46 E-value=1.9e-13 Score=132.03 Aligned_cols=108 Identities=26% Similarity=0.428 Sum_probs=87.2
Q ss_pred eeEEEEEecceEEecCCCce--EEEEEEEEecCCCeeEEEeccchHHHHHHHHHccccC--CCCCCCcc-----ccC---
Q 001221 664 FKLRCEVLGANIVKSDSRTF--AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEY--NLHLPPKH-----FLS--- 731 (1121)
Q Consensus 664 ~~i~a~I~g~~~~~~~~k~y--~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~~p~~--~p~LP~K~-----~~~--- 731 (1121)
.+|+|+|+|++..+.+.+.+ ++|+|+++.+ ..+|.|+|||++|.+||+.|..|... +||+|... ...
T Consensus 2 ~pi~~~V~~~er~~s~s~~~~~~lYtIeltHG-~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~ 80 (130)
T cd07297 2 VPVTAKVENTERYTTGSKVHVCTLYTVRLTHG-EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLT 80 (130)
T ss_pred CceEEEEEEEEEeecccccccceeEEEEEecC-ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhcccccccc
Confidence 47999999999998888888 8999999998 58999999999999999999976542 34555211 100
Q ss_pred ------CCCC---hHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 732 ------TGLD---VSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 732 ------~~~~---~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
.... .+-+..|+++||+||+.||.+|..++.++..+||+.+
T Consensus 81 ~~mP~LP~~~~~~~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeVS 130 (130)
T cd07297 81 EEMPSLPGTDREASRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAVS 130 (130)
T ss_pred CcCCCCCCCCchhhhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeecC
Confidence 0001 3457789999999999999999999999999999864
No 66
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.39 E-value=2e-12 Score=126.01 Aligned_cols=104 Identities=28% Similarity=0.339 Sum_probs=86.0
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-cccc---------C-CCCCCCccccC
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQE---------Y-NLHLPPKHFLS 731 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~---------~-~p~LP~K~~~~ 731 (1121)
.....+..+|.+ + ...+.+|+|.|++.++..|.|+|||+||++||.+|+ .||. . +|.||++.++
T Consensus 3 r~~~~v~~~g~~--k--~~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~- 77 (121)
T cd06889 3 RHPVDVQGVGVM--Q--KRRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL- 77 (121)
T ss_pred cceEEEEEEeee--c--ccceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc-
Confidence 345566666654 3 456679999999999999999999999999999999 4873 2 7999999998
Q ss_pred CCC--ChHHHHHHHHHHHHHHHHhhcC-CCCCCChhhhccccc
Q 001221 732 TGL--DVSVIQERCKLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1121)
Q Consensus 732 ~~~--~~~flekRr~~Le~YLq~LL~~-p~l~~s~~l~~FL~~ 771 (1121)
++. ..+.-++|+..|+.|++.|+.. |.+.+|+.|..|+.+
T Consensus 78 ~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 78 GSLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 443 3345789999999999999998 579999999999976
No 67
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.30 E-value=8.7e-12 Score=122.58 Aligned_cols=102 Identities=16% Similarity=0.270 Sum_probs=81.4
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc---cccC-CCCCCCccccC------
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQEY-NLHLPPKHFLS------ 731 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~---~p~~-~p~LP~K~~~~------ 731 (1121)
+.+.|.++-..+++ +.|.|..+.+. .....|.|||+||..||.+|.+ |+++ +||+|+|..+.
T Consensus 3 l~v~isD~~~~~d~----V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~ 78 (141)
T cd07292 3 LQVDISDALSERDK----VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKL 78 (141)
T ss_pred eEEEcccccccCCc----eEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHH
Confidence 45677777544433 99999987542 4679999999999999999983 6775 89999998651
Q ss_pred -------CCCChHHHH---------------HHHHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 732 -------TGLDVSVIQ---------------ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 732 -------~~~~~~fle---------------kRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+++..++.+ +|+.+||.|||+|.+||.++++..++.||+-
T Consensus 79 ~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 79 QKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 234555555 7778899999999999999999999999973
No 68
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.29 E-value=1.1e-11 Score=122.18 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=79.3
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHHc---cccC-CCCCCCccccC------
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF---FQEY-NLHLPPKHFLS------ 731 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk~---~p~~-~p~LP~K~~~~------ 731 (1121)
+.+.|.++-..+ .++.|.|..+.. .+....|.|||+||..||.+|.+ |+++ +||+|+|..+.
T Consensus 3 l~i~vsD~~~~~----d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~ 78 (141)
T cd07291 3 LQIDIPDALSER----DKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKM 78 (141)
T ss_pred cEEEeccccccC----CCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhh
Confidence 456677764333 449999988653 14679999999999999999983 5775 89999998661
Q ss_pred -------CCCC-hHHHHHH--------------HHHHHHHHHHhhcCCCCCCChhhhccccc
Q 001221 732 -------TGLD-VSVIQER--------------CKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 732 -------~~~~-~~flekR--------------r~~Le~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
+++. .+|++.| +++||.|||+|..||.++++..++.||+.
T Consensus 79 ~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 79 QKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred hhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 2233 3566644 35699999999999999999999999975
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=1.4e-11 Score=133.93 Aligned_cols=91 Identities=27% Similarity=0.437 Sum_probs=76.1
Q ss_pred CCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 001221 680 SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPT 758 (1121)
Q Consensus 680 ~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~~p~ 758 (1121)
...|++|.|+|+.+ ...|.|.|||+||+.||++|. +..-..--||||+++ ++.++.|+|+|+.+||.|||.||.--.
T Consensus 24 ~~~~t~y~i~v~~g-~~ew~v~~ry~df~~lheklv~e~~i~k~llppkk~i-g~~~~s~~e~r~~~leiylq~ll~~f~ 101 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVG-KVEWLVERRYRDFANLHEKLVGEISISKKLLPPKKLV-GNKQPSFLEQRREQLEIYLQELLIYFR 101 (490)
T ss_pred cCceEEEEEEEEec-ceeeeehhhhhHHHHHHHHhhhhheeccccCCchhhc-CCCChhHHHHHHHHHHHHHHHHHHHcc
Confidence 45799999999987 778999999999999999999 543222238999998 899999999999999999999997633
Q ss_pred CCCChhhhcccccc
Q 001221 759 VSGSIEVWDFLSVD 772 (1121)
Q Consensus 759 l~~s~~l~~FL~~~ 772 (1121)
-....++..||...
T Consensus 102 ~~~pr~la~fl~f~ 115 (490)
T KOG1259|consen 102 TELPRALAEFLDFN 115 (490)
T ss_pred ccCHHHHHHHhccc
Confidence 33457788888876
No 70
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.23 E-value=3.8e-11 Score=119.63 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=78.7
Q ss_pred CceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHHc---cccC-CCCCCCcccc----------C---CCCChHHH
Q 001221 681 RTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQEY-NLHLPPKHFL----------S---TGLDVSVI 739 (1121)
Q Consensus 681 k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk~---~p~~-~p~LP~K~~~----------~---~~~~~~fl 739 (1121)
+.++.|.|.++.+. .....|.|||+||..||.+|.+ |+++ +||+|+|..+ . +++..+|+
T Consensus 14 ~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~klg~~d~~~~~ef~ 93 (141)
T cd06892 14 RDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKLGEGEGSMTKEEF 93 (141)
T ss_pred CCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeecccCccccchHHH
Confidence 46799999887542 4689999999999999999993 6875 8999999754 0 35889999
Q ss_pred HHHHHHH---------------HHHHHHhhcCCCCCCChhhhccccc
Q 001221 740 QERCKLL---------------DRYLKMLLQLPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 740 ekRr~~L---------------e~YLq~LL~~p~l~~s~~l~~FL~~ 771 (1121)
++|+..| +.||++|..||.+.++..++.||+.
T Consensus 94 ~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 94 EKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 9999999 5899999999999999999999974
No 71
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.13 E-value=1.4e-10 Score=107.53 Aligned_cols=84 Identities=30% Similarity=0.362 Sum_probs=72.8
Q ss_pred EEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhcC-CCCC
Q 001221 684 AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL-PTVS 760 (1121)
Q Consensus 684 ~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~~-p~l~ 760 (1121)
.+|.|+|.+.++..-.|+|+|.||.+||++|+ +||.. +|.||.+..+ +-.+. -++|.+.||.||+.|+.- ++++
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~-~~~~~--~~~R~~~L~~Yl~~Ll~~~~eVa 89 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHL-PFTDS--DHKRVRDLNHYLEQLLSGSREVA 89 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCcccc-CcccH--HHHHHHHHHHHHHHHHccCHHHh
Confidence 57999999988889999999999999999999 59985 8999999644 22233 478999999999999987 6799
Q ss_pred CChhhhcccc
Q 001221 761 GSIEVWDFLS 770 (1121)
Q Consensus 761 ~s~~l~~FL~ 770 (1121)
+|+.|..|+.
T Consensus 90 ~sd~v~sFF~ 99 (101)
T cd06896 90 NSDCVLSFFL 99 (101)
T ss_pred cchHHHHHhh
Confidence 9999999985
No 72
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.7e-10 Score=137.13 Aligned_cols=108 Identities=26% Similarity=0.390 Sum_probs=91.7
Q ss_pred EEEEEecce-EEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCC----CC
Q 001221 666 LRCEVLGAN-IVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLST----GL 734 (1121)
Q Consensus 666 i~a~I~g~~-~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~----~~ 734 (1121)
+.+.+.+.+ -...+.+.|+.|.|.+.... .....|+|||+||..||..|. .||+. +||+|+|..... .+
T Consensus 110 ~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~~ 189 (503)
T KOG2273|consen 110 LSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDSF 189 (503)
T ss_pred eeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCCC
Confidence 444444444 34467789999999998642 356899999999999999999 59985 899999997633 67
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 735 ~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+.+|+++||++|+.||+.+..||.++++..|+.||+...
T Consensus 190 s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 190 SDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 999999999999999999999999999999999999984
No 73
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=7.8e-09 Score=117.59 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=93.5
Q ss_pred eeEEEEEecceEE--ecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHH
Q 001221 664 FKLRCEVLGANIV--KSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVI 739 (1121)
Q Consensus 664 ~~i~a~I~g~~~~--~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~fl 739 (1121)
....|.|-++... ..|.|+|+.|.+.-+.. ..| |.|||+.|..||.+|. +|+.. +|+||.|..- +.+..+||
T Consensus 184 ~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~t--~~~-v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~-gr~Ee~fi 259 (490)
T KOG2528|consen 184 SPFRCVVDDPKKESKFKGLKSYIAYQLTPTHT--NIS-VSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVT-GRFEEDFI 259 (490)
T ss_pred CCeeEEecCcccccccccchheeEeeeccccc--Ccc-hhhcccccHHHHHHHHhhcccccCCCCCccccc-cchhHHHH
Confidence 3567777665432 34789999999966543 345 9999999999999999 69875 8999999987 78999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhcccccc--ccCcccCCC
Q 001221 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD--SQTYAFSNP 781 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~--~~~y~~~~~ 781 (1121)
++||++|+.|++.++.||.+.+|+.+..||+-. +..+..||.
T Consensus 260 ~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKR 303 (490)
T KOG2528|consen 260 EKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKR 303 (490)
T ss_pred HHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCccccccccccc
Confidence 999999999999999999999999999999874 444544443
No 74
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=9.2e-08 Score=111.65 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCcCCCcccCCCCCCHHHHHHHHHH
Q 001221 961 AFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRPKRRQVPPSSSSQGSPQVRQPAEISSPGLSEEQKQEADRR 1040 (1121)
Q Consensus 961 tI~~~i~~~i~~l~se~~v~~~i~~l~~~lWP~G~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~r~s~eek~et~~~ 1040 (1121)
.+...+.+...|..+++.+...+...+..+|++|.+..... + + +.+.+..+...
T Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------------------~-~~~~~~~~~~~ 323 (362)
T KOG2101|consen 270 EILAKLVDPLKLLLSEEQVPLDLLRFRLHLWLLGLFSPLLQ-----S--------------------R-TAELKQITQLG 323 (362)
T ss_pred hhhhhcCCchhHhHhHhhhhHHHhhhhHhhccccCcCcccc-----C--------------------c-hHHHHHHHhcc
Confidence 67778888889999999999999999999999998853221 0 2 56677776666
Q ss_pred HHHHHHHHHhcCCcccccccChHHHHHHHHHHHHHhcChHH
Q 001221 1041 AKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVC 1081 (1121)
Q Consensus 1041 A~~~~~~ll~~~P~~L~~lvG~~~~~~~~~~if~~lQ~~~l 1081 (1121)
+. ..+.+.+|+.+...+|..+...|+..++.+||...+
T Consensus 324 ~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 361 (362)
T KOG2101|consen 324 AL---NKLDDSLPDELRSLIRAYTSRKGIEAIFEILQPSGL 361 (362)
T ss_pred ch---hhhHHhhhHHHHhhhhhhHHHHHHHHHHHHhccccC
Confidence 64 678899999999999999999999999999998754
No 75
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.34 E-value=8.8e-07 Score=106.68 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=72.8
Q ss_pred cCCCceEEEEEEEEecC----CCee---EEEeccchHHHHHHHHH-ccccC-CCCCCCccccC----CCCChHHHHHHHH
Q 001221 678 SDSRTFAVYAIAVTDSN----NNSW---SIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLS----TGLDVSVIQERCK 744 (1121)
Q Consensus 678 ~~~k~y~vY~I~V~~~~----~~~w---~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~----~~~~~~flekRr~ 744 (1121)
+....|+.|.|....+. ...- +|.||||||..||..|. .||.. +|+||+|++.. ++++++|+++|+.
T Consensus 146 ~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~~~~~~~~i~~r~~ 225 (524)
T COG5391 146 DSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQ 225 (524)
T ss_pred ccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccccccchHHHHHHHH
Confidence 34578899998776542 2233 99999999999999999 48885 89999999873 5899999999999
Q ss_pred HHHHHHHHhhcCCCCCCCh
Q 001221 745 LLDRYLKMLLQLPTVSGSI 763 (1121)
Q Consensus 745 ~Le~YLq~LL~~p~l~~s~ 763 (1121)
+|+.|++.+..+|.+.++.
T Consensus 226 ~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 226 SLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred HHHHHHHHHhcCccccccc
Confidence 9999999999999998755
No 76
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.4e-06 Score=98.98 Aligned_cols=90 Identities=27% Similarity=0.440 Sum_probs=79.5
Q ss_pred CCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhcC
Q 001221 679 DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL 756 (1121)
Q Consensus 679 ~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~~ 756 (1121)
+...|++|.|.+.. ..+..+||+++.+||..|+ +|..+ .|+||+|+.| .+++.-++.||.+||+||+.+.++
T Consensus 13 ~~~~ytaynih~nG----~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f--~L~~~~~~~rr~~leqylqa~~q~ 86 (407)
T KOG3784|consen 13 SLERYTAYNIHING----RQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF--KLTPQQLDSRRRGLEQYLQAVCQD 86 (407)
T ss_pred Ccccccceeeeecc----eeEEEEehHHHHhHHHHHHHHhhcccCCCCCccccc--CCChhhhHHHHHHHHHHHHHHhcC
Confidence 66799999998853 4678899999999999999 56555 8999999997 489999999999999999999999
Q ss_pred CCCCCChhhhcccccccc
Q 001221 757 PTVSGSIEVWDFLSVDSQ 774 (1121)
Q Consensus 757 p~l~~s~~l~~FL~~~~~ 774 (1121)
|.+..+..+..||..-+.
T Consensus 87 ~~l~~s~~~~~fL~~~q~ 104 (407)
T KOG3784|consen 87 PVLARSELVQKFLMRAQP 104 (407)
T ss_pred ccccchhhhhHHHHhccc
Confidence 999999999999987653
No 77
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.03 E-value=9.4e-06 Score=101.14 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=85.8
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCC-CeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHHHH
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQERC 743 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~-~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flekRr 743 (1121)
.+.|++.+..- ..+++..|.|+|++.+. ..-.|+|-|.||.+||.+|+ .||.. .|.||..-.+.++.-.+.-++|+
T Consensus 1377 ~v~v~~f~K~~-~pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grsnikaVA~kR~ 1455 (1639)
T KOG0905|consen 1377 EVTVLKFEKHY-SPNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRSNIKAVAEKRI 1455 (1639)
T ss_pred EEEEEEeeeec-cCCceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeecccchhHHHHHHH
Confidence 45556554332 34567899999998743 57789999999999999999 69985 78899887664555678999999
Q ss_pred HHHHHHHHHhhcC-CCCCCChhhhcccccc
Q 001221 744 KLLDRYLKMLLQL-PTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 744 ~~Le~YLq~LL~~-p~l~~s~~l~~FL~~~ 772 (1121)
..|+.||..|+.- ++++.|+.|+.|+.+-
T Consensus 1456 ~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1456 IELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred HHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 9999999999976 6799999999999875
No 78
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.69 E-value=2.5e-05 Score=87.22 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=86.5
Q ss_pred eeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc---------C-CCCCCCccccCC
Q 001221 664 FKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------Y-NLHLPPKHFLST 732 (1121)
Q Consensus 664 ~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~---------~-~p~LP~K~~~~~ 732 (1121)
+.+.+.|++++....- .++.+|+|+|.+.++...+|+|||.||+++|.+|++ |+. . .|+||.+.+|
T Consensus 20 i~~~~kvi~~eke~~f-~~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~f-- 96 (386)
T KOG4773|consen 20 IAIPAKVIDAEKERSF-TSHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYF-- 96 (386)
T ss_pred ccchHHHHhHHHhccc-chheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEe--
Confidence 3455566776633222 337799999998878899999999999999999995 742 1 6999999998
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCC-CCCChhhhccccccc
Q 001221 733 GLDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDS 773 (1121)
Q Consensus 733 ~~~~~flekRr~~Le~YLq~LL~~p~-l~~s~~l~~FL~~~~ 773 (1121)
.+-.+--|+|...|+.|+..|+..|. +..++.|+.|+-.+.
T Consensus 97 dfkqe~Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fffvsp 138 (386)
T KOG4773|consen 97 DFKQEIAEERIPALNAYCEWLLSLPIGRLGGPGLRPFFFVSP 138 (386)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhhcCCCCceeeeeecc
Confidence 25678899999999999999999997 568899999988775
No 79
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.24 E-value=0.0011 Score=63.32 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=61.8
Q ss_pred EEEEEEEEecCCCeeEEEeccchHHHHHHHHHcc--cc---CCCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhcCC-
Q 001221 684 AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFF--QE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLP- 757 (1121)
Q Consensus 684 ~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~~--p~---~~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~~p- 757 (1121)
.+|.|.|+.. +++|.|+|+|-||.-|.+.|.++ .- .+++||++... .-.++.+ ...|.+||.++-.+.
T Consensus 28 ~~~~v~v~Cq-grsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l--~~~~~~v---~~~l~~YL~RlS~Ia~ 101 (115)
T cd07298 28 LVYLVQIACQ-GRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSL--KDSPESV---TQMLMAYLSRLSAIAG 101 (115)
T ss_pred eEEEEEEEeC-CCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCcccc--cccHHHH---HHHHHHHHHHHHHHhh
Confidence 7899999986 78999999999999999999863 21 37889998754 2345666 468999999998773
Q ss_pred CCCCChhhhcccc
Q 001221 758 TVSGSIEVWDFLS 770 (1121)
Q Consensus 758 ~l~~s~~l~~FL~ 770 (1121)
..-+|-.+..||+
T Consensus 102 ~~~nCGPvLtWle 114 (115)
T cd07298 102 NKINCGPALTWME 114 (115)
T ss_pred CCccchhcceeee
Confidence 3445666666664
No 80
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.63 E-value=0.0078 Score=57.24 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=60.1
Q ss_pred CceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc--ccc---CCCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhc
Q 001221 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQ 755 (1121)
Q Consensus 681 k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~--~p~---~~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~ 755 (1121)
....+|.|+|+.. +++|.|.|.|-||..|.+.|-+ |.- ..++||+---. . ... +.=...|..||.+|-.
T Consensus 23 ~k~~~flv~V~cq-grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l-~-~~~---~~~~~~l~~YL~RlS~ 96 (113)
T cd07299 23 EKDLVFLVQVTCQ-GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEI-G-DRL---QILTPLLSEYLNRLTG 96 (113)
T ss_pred CCceEEEEEEEec-CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccc-c-chH---HHHHHHHHHHHHHHHH
Confidence 4568999999986 7899999999999999999986 322 26777776322 1 122 2334689999999987
Q ss_pred C-CCCCCChhhhcccc
Q 001221 756 L-PTVSGSIEVWDFLS 770 (1121)
Q Consensus 756 ~-p~l~~s~~l~~FL~ 770 (1121)
+ ...-+|-.+..||+
T Consensus 97 Ia~~~inCGPVLtWme 112 (113)
T cd07299 97 IVDSNLNCGPVLTWME 112 (113)
T ss_pred HhcCCccccccceeee
Confidence 7 33456666666664
No 81
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.60 E-value=0.0077 Score=57.47 Aligned_cols=84 Identities=23% Similarity=0.373 Sum_probs=61.2
Q ss_pred CceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc--ccc---CCCCCCCccccCCCCChHHHHHHHHHHHHHHHHhhc
Q 001221 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQ 755 (1121)
Q Consensus 681 k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~--~p~---~~p~LP~K~~~~~~~~~~flekRr~~Le~YLq~LL~ 755 (1121)
.+..+|.|+|+.. +++|.|+|.|-+|.-|.++|-+ |.- ...+||+--.. +-..+-+ ...|..||.++-.
T Consensus 24 ~k~~~~~v~V~cq-g~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~--~~~~~~~---~~~l~~YL~RlS~ 97 (114)
T cd07278 24 GKELVYLVQVQCQ-GKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE--KREQQNL---HQVLSDYLKRLSS 97 (114)
T ss_pred CCceEEEEEEEeC-CcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc--cchHHHH---HHHHHHHHHHHHH
Confidence 4568999999987 7999999999999999999986 322 26778875432 1233333 4689999999987
Q ss_pred C-CCCCCChhhhcccc
Q 001221 756 L-PTVSGSIEVWDFLS 770 (1121)
Q Consensus 756 ~-p~l~~s~~l~~FL~ 770 (1121)
+ ...-+|-.+..||+
T Consensus 98 Ia~~~inCGPvLtWle 113 (114)
T cd07278 98 IAGNLLNCGPVLNWLE 113 (114)
T ss_pred HhcCcccchhcceeee
Confidence 7 34556666777765
No 82
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=93.10 E-value=0.066 Score=62.88 Aligned_cols=90 Identities=30% Similarity=0.496 Sum_probs=66.9
Q ss_pred ecCCCceEEEEEEEEecCCC----eeEEEeccchHHHHHHHHHc-c-ccC---CCCCC---CccccCCCCChHHHHHHHH
Q 001221 677 KSDSRTFAVYAIAVTDSNNN----SWSIKRRFRHFEELHRRLKF-F-QEY---NLHLP---PKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 677 ~~~~k~y~vY~I~V~~~~~~----~w~V~RRYsdF~~Lh~~Lk~-~-p~~---~p~LP---~K~~~~~~~~~~flekRr~ 744 (1121)
++..+.|++|.+.|...... .|.|+|||+||+.||.+|++ | |.. .+.+| .++.+..+++..++..|+.
T Consensus 129 ~~~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 208 (362)
T KOG2101|consen 129 REKSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSE 208 (362)
T ss_pred cccccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhh
Confidence 35567899999999876433 59999999999999999996 7 553 33334 2334448899999999999
Q ss_pred HHHHHH--HHhhcCCCCCCChhhh
Q 001221 745 LLDRYL--KMLLQLPTVSGSIEVW 766 (1121)
Q Consensus 745 ~Le~YL--q~LL~~p~l~~s~~l~ 766 (1121)
.++.|| +..-..+...++..+.
T Consensus 209 ~~~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 209 ALEEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred hHHHHHHhhhhhccccccchHHhh
Confidence 999999 5555555555554444
No 83
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=58.86 E-value=22 Score=41.13 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=61.7
Q ss_pred EEEEEEEEec---CCCeeEEEeccchHHHHHHHHHc---cccC-CCCCCCccccC-------------CCCChHHHHHHH
Q 001221 684 AVYAIAVTDS---NNNSWSIKRRFRHFEELHRRLKF---FQEY-NLHLPPKHFLS-------------TGLDVSVIQERC 743 (1121)
Q Consensus 684 ~vY~I~V~~~---~~~~w~V~RRYsdF~~Lh~~Lk~---~p~~-~p~LP~K~~~~-------------~~~~~~flekRr 743 (1121)
+-|.+.+... ......|.|---+|+.||..+.. |-++ +|+-|++.-|- ++|..+-.-+=+
T Consensus 40 vK~tv~t~t~lp~~~~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK 119 (399)
T KOG1660|consen 40 VKFTVHTRTTLPLFMPEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMK 119 (399)
T ss_pred ceeeEEEeeeccCCCCccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHH
Confidence 3455555432 12456788888999999999984 5554 67777776441 334443333333
Q ss_pred HHH---------------HHHHHHhhcCCCCCCChhhhccccccc
Q 001221 744 KLL---------------DRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 744 ~~L---------------e~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
..| +.||++|..||.++....+.-||+-.+
T Consensus 120 ~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~q 164 (399)
T KOG1660|consen 120 QELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQ 164 (399)
T ss_pred HHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhcc
Confidence 333 579999999999999999999998774
No 84
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=44.29 E-value=24 Score=45.55 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=67.6
Q ss_pred EEEEEecceEEecC--CCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc---cccC--------------CCCCCC
Q 001221 666 LRCEVLGANIVKSD--SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF---FQEY--------------NLHLPP 726 (1121)
Q Consensus 666 i~a~I~g~~~~~~~--~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~---~p~~--------------~p~LP~ 726 (1121)
+.+.++|.+.-..+ ...-..|.+....+ .-.|.|++-+..|..+|..|.. +... .|..|.
T Consensus 47 v~~~~~~~~~~~~~~~~~~~~~y~v~L~hG-~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 125 (887)
T KOG1329|consen 47 VFAAVVGVERPTSHPFVPSSGSYTVELLHG-TLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPR 125 (887)
T ss_pred ccccccceecccccccccCCcceeeeeecC-cEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCcc
Confidence 34445554433222 22346799999876 6689999999999999999952 2111 122232
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 727 KHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 727 K~~~~~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
.... .--+|+..+|.||..+|..+.+.+...+.+||+.+.
T Consensus 126 ~~~~-------~~~~~~~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~ 165 (887)
T KOG1329|consen 126 SSLN-------SSMEKRKTLENYLTVVLHKARYRRTHVIYEFLENSR 165 (887)
T ss_pred CCcc-------cchhhhhhccchheeeechhhhhchhhhhcccccch
Confidence 2221 113455569999999999999999999999988775
No 85
>PLN02866 phospholipase D
Probab=41.07 E-value=17 Score=47.94 Aligned_cols=92 Identities=23% Similarity=0.305 Sum_probs=62.9
Q ss_pred EEEEEEEEecCCCeeEEEeccchHHHHHHHHHc--cc---------------cC-CC---------------CCCC----
Q 001221 684 AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQ---------------EY-NL---------------HLPP---- 726 (1121)
Q Consensus 684 ~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~--~p---------------~~-~p---------------~LP~---- 726 (1121)
-.|+|+++.. .-.|.+++.-++-.-||-.||+ |- +. +- ..|-
T Consensus 33 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1068)
T PLN02866 33 LSYTIELQYK-QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVPLHHDE 111 (1068)
T ss_pred EEEEEEEEEe-eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccccccccccccccchh
Confidence 5799999876 5789999988877766666652 20 00 00 0221
Q ss_pred ---------cccc---C--CCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccccCc
Q 001221 727 ---------KHFL---S--TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTY 776 (1121)
Q Consensus 727 ---------K~~~---~--~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~~~y 776 (1121)
.-.+ . -.-.+.+..+++.+||+||+.+|.+..+.+++++..||+.+...|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~lsf 175 (1068)
T PLN02866 112 SAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSKLSF 175 (1068)
T ss_pred hcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeeceeee
Confidence 1100 0 012445566777789999999999999999999999999996443
No 86
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=32.85 E-value=96 Score=34.92 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=41.1
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhhHhHHHHHHHHHHHHhh
Q 001221 9 VNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRY 59 (1121)
Q Consensus 9 ~~~~dl~ee~k~r~~~~~~~~~~l~~~l~~t~~s~w~n~~~~~l~~~~~~~ 59 (1121)
.-.+|++--+-+-++.++++|++|.|+.. ..|+|+++.+.++++.+..|
T Consensus 32 ~l~~~l~~a~~R~~vQL~~vG~vL~~if~--~~~~~~~~l~~~~M~~~As~ 80 (250)
T PF03649_consen 32 GLERDLLIASLRMVVQLLLVGYVLHYIFK--LNNPWLVILWLLVMILVASF 80 (250)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHH
Confidence 45688898899999999999999999873 35899999998888877655
No 87
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=29.76 E-value=1.1e+02 Score=29.08 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHhHHHHHHHHHHH
Q 001221 21 RIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIIL 56 (1121)
Q Consensus 21 r~~~~~~~~~~l~~~l~~t~~s~w~n~~~~~l~~~~ 56 (1121)
|+..+|++.++++|++--+-.+.|+-+++|+++.++
T Consensus 44 nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~ 79 (90)
T PF11674_consen 44 NIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLA 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 677788888889887644446788888888887754
No 88
>PF14571 Di19_C: Stress-induced protein Di19, C-terminal
Probab=25.16 E-value=85 Score=30.63 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhc
Q 001221 1028 GLSEEQKQEADRRAKFVFELMIDK 1051 (1121)
Q Consensus 1028 r~s~eek~et~~~A~~~~~~ll~~ 1051 (1121)
.++.+|+.|.++||.+|+.+|+..
T Consensus 81 ~lS~ee~eEk~~RseFVQ~LllST 104 (105)
T PF14571_consen 81 SLSDEEQEEKAQRSEFVQGLLLST 104 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 459999999999999999988753
No 89
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=25.03 E-value=1.7e+02 Score=26.00 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcchhhHhHHHHHHHHHHHHhhc
Q 001221 17 EGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYF 60 (1121)
Q Consensus 17 e~k~r~~~~~~~~~~l~~~l~~t~~s~w~n~~~~~l~~~~~~~l 60 (1121)
.||.+++....+++++++++ ...+.|+-+.++++++...-|+
T Consensus 27 k~K~~a~~~m~~~~~~s~~~--~~~~~~~~~~l~~~~~~~~~~i 68 (71)
T PF04304_consen 27 KAKIRALLMMWLSMGISAFF--FVPNLWVRIVLAAILLIVAIYI 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHh
Confidence 37888888888888887444 3345787777777777655544
No 90
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=23.35 E-value=1.6e+02 Score=35.97 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 001221 975 RGSVVASGIKRLEQILWPDGIFLTKRPKRRQVPPSSSSQGSPQVRQPAEISSPGLSEEQKQEADRRAKFVFELMIDKAPA 1054 (1121)
Q Consensus 975 se~~v~~~i~~l~~~lWP~G~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~r~s~eek~et~~~A~~~~~~ll~~~P~ 1054 (1121)
.|.+|-.+|..|+-+|||+-.|- +.+. . . -.|.++=..+.|+|- +-.=||
T Consensus 370 KE~NIRALLSTLh~VLW~es~Wq--------pVsl-----t----D-------LVtp~~VKKaYrKA~------L~VHPD 419 (453)
T KOG0431|consen 370 KEGNIRALLSTLHYVLWPESGWQ--------PVSL-----T----D-------LVTPAQVKKAYRKAV------LCVHPD 419 (453)
T ss_pred ccccHHHHHHHHhHhhcCccCcc--------cCch-----h----h-------ccCHHHHHHHHHhhh------heeCcc
Confidence 68899999999999999977672 1211 1 0 015555555555552 334477
Q ss_pred ccccccChHHHHHHHHHHHHHhcC
Q 001221 1055 PVVGLVGRKEYEQCAKDLYYFIQS 1078 (1121)
Q Consensus 1055 ~L~~lvG~~~~~~~~~~if~~lQ~ 1078 (1121)
.|..==-......-+.+||++|+.
T Consensus 420 Klqq~gas~~qK~Iaekvfd~l~e 443 (453)
T KOG0431|consen 420 KLQQKGASLEQKYIAEKVFDALSE 443 (453)
T ss_pred cccCCcccHHHHHHHHHHHHHHHH
Confidence 765432223445567777777763
Done!