Query 001221
Match_columns 1121
No_of_seqs 424 out of 1474
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq2_A Sorting nexin-7; SNX7, 99.8 7.1E-20 2.4E-24 182.9 12.0 111 663-773 6-125 (138)
2 2csk_A Sorting nexin 12; SNX12 99.8 6E-20 2.1E-24 185.1 11.1 109 665-773 10-131 (146)
3 1xte_A Serine/threonine-protei 99.8 5.9E-20 2E-24 186.8 10.3 107 666-773 8-115 (154)
4 3p0c_A Nischarin; structural g 99.8 2.3E-19 7.7E-24 177.4 9.4 104 666-777 23-127 (130)
5 1ocs_A Sorting nexin GRD19; so 99.8 3.7E-19 1.3E-23 182.4 10.8 108 665-772 35-158 (162)
6 1h6h_A Neutrophil cytosol fact 99.8 5.4E-19 1.8E-23 177.5 10.0 110 663-775 18-138 (143)
7 2ar5_A Phosphoinositide 3-kina 99.8 6.6E-19 2.2E-23 172.0 10.3 108 665-773 5-116 (121)
8 3lui_A Sorting nexin-17, SNX17 99.8 3.4E-19 1.2E-23 172.5 6.9 103 665-773 3-109 (115)
9 2v14_A Kinesin-like motor prot 99.8 2.4E-18 8E-23 171.0 11.2 99 665-765 5-106 (134)
10 2i4k_A Sorting nexin-1, SNX1; 99.8 1.1E-19 3.7E-24 178.9 1.5 108 665-772 3-127 (128)
11 2ett_A Sorting nexin-22; PX do 99.7 1.8E-18 6.1E-23 170.5 9.7 104 664-773 10-117 (128)
12 4az9_A Sorting nexin-24; prote 99.7 6.5E-18 2.2E-22 166.7 11.6 102 665-772 22-125 (129)
13 1kq6_A NCF-1, P47PHOX, neutrop 99.7 8.9E-18 3E-22 168.3 11.2 108 665-776 6-125 (141)
14 2l73_A NADPH oxidase organizer 99.7 4.9E-18 1.7E-22 171.4 8.9 111 667-777 10-132 (149)
15 1kmd_A VAM7P, vacuolar morphog 99.7 5E-18 1.7E-22 164.8 7.9 99 666-773 6-115 (117)
16 2iwl_X Phosphatidylinositol-4- 99.7 4.3E-18 1.5E-22 170.4 7.6 112 663-775 18-133 (140)
17 2v6v_A BUD emergence protein 1 99.7 1.9E-16 6.6E-21 160.9 12.4 109 661-776 14-139 (156)
18 3dyt_A Sorting nexin-9; 3-heli 99.6 1E-16 3.6E-21 184.7 5.7 108 662-773 17-129 (366)
19 4akv_A Sorting nexin-33; trans 99.6 9.1E-17 3.1E-21 186.1 5.0 109 661-773 37-149 (386)
20 2wwe_A Phosphoinositide-3-kina 99.6 2.2E-15 7.5E-20 145.3 6.5 101 663-771 23-126 (127)
21 3hpc_X SNX5 protein; sprting n 99.5 9.9E-15 3.4E-19 148.8 10.1 108 663-774 9-152 (161)
22 2dyb_A Neutrophil cytosol fact 99.4 4.5E-13 1.5E-17 153.0 10.8 110 663-775 21-141 (341)
No 1
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.81 E-value=7.1e-20 Score=182.86 Aligned_cols=111 Identities=22% Similarity=0.319 Sum_probs=98.0
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecC----CCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccC---CC
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLS---TG 733 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~----~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~---~~ 733 (1121)
..++.+.|.++.++++|+++|++|.|.|+... +..|.|+|||+||..||++|+ .||.. +|+||+|+++. ++
T Consensus 6 ~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~ 85 (138)
T 3iq2_A 6 LKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVER 85 (138)
T ss_dssp CCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGG
T ss_pred cceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhcccccc
Confidence 34688899999999999999999999998752 468999999999999999999 58885 89999999872 24
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 734 ~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
++++|||+||++||.||+.|+++|.+++++.|+.||+.++
T Consensus 86 ~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~ 125 (138)
T 3iq2_A 86 FNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQA 125 (138)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCC
Confidence 5999999999999999999999999999999999999885
No 2
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6e-20 Score=185.13 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=98.0
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHHccccC-CCCCCCccccC--------
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHFLS-------- 731 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk~~p~~-~p~LP~K~~~~-------- 731 (1121)
.+.+.|.+++.+.+|++.|++|.|+|+.. .+..|.|.|||+||..||++|++.|.. +|+||+|+++.
T Consensus 10 ~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~~~~~~~ 89 (146)
T 2csk_A 10 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDE 89 (146)
T ss_dssp CCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSSTTCCCS
T ss_pred cEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhccCCcCCCCCCCchhhcccccccc
Confidence 46778888898888899999999999865 256899999999999999999976664 89999999873
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 732 ~~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
++++++|||+||++||.||+.|+++|.+++++.|+.||+...
T Consensus 90 g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~ 131 (146)
T 2csk_A 90 GIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEA 131 (146)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCc
Confidence 578999999999999999999999999999999999999874
No 3
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.80 E-value=5.9e-20 Score=186.83 Aligned_cols=107 Identities=24% Similarity=0.497 Sum_probs=97.7
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHHHHHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
+.+.|.+++.+.++++.|++|.|+|+.+ +..|.|+||||||.+||++|++ ||...++||+|++++.+++++|+|+||.
T Consensus 8 ~~v~I~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~g~~~~~~~ie~Rr~ 86 (154)
T 1xte_A 8 PSVSIPSSDEHREKKKRFTVYKVLVSVG-RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRA 86 (154)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHHHHHHH
T ss_pred CEEEECCcEEEecCCCCEEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCccccCCCCCHHHHHHHHH
Confidence 4778889888888899999999999986 6789999999999999999995 8886667999999832899999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 745 ~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+||.||+.|+.+|.++.++.|+.||+...
T Consensus 87 ~Le~yL~~l~~~p~l~~s~~l~~FL~~~~ 115 (154)
T 1xte_A 87 GLNEFIQNLVRYPELYNHPDVRAFLQMDS 115 (154)
T ss_dssp HHHHHHHHHTTCHHHHTSHHHHHHTTTTC
T ss_pred HHHHHHHHHHcChhhccChHHHHHhCCCC
Confidence 99999999999999999999999998874
No 4
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=177.45 Aligned_cols=104 Identities=30% Similarity=0.480 Sum_probs=93.2
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHHHHHHH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCK 744 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~flekRr~ 744 (1121)
..|+|.|++ .++.|++|.|+|+.+ +..|.|+||||||..||++|++ |+...|+||+|+++ ++++++|+|+||+
T Consensus 23 ~~v~I~~~~----~~~~y~~Y~I~v~~~-~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~-g~~~~~~ie~Rr~ 96 (130)
T 3p0c_A 23 MEARVVGSE----LVDTYTVYIIQVTDG-SHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKII-GKNSRSLVEKREK 96 (130)
T ss_dssp CEEEEEEEE----CSSSSCEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCC-SCCCSCSHHHHHH
T ss_pred eEEEEEecc----ccCCEEEEEEEEEEC-CeEEEEEehHHHHHHHHHHHHHHcCCCCCCCCCcccc-ccCCHHHHHHHHH
Confidence 457777764 457899999999986 7899999999999999999995 77667899999998 7889999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhhccccccccCcc
Q 001221 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYA 777 (1121)
Q Consensus 745 ~Le~YLq~LL~~p~l~~s~~l~~FL~~~~~~y~ 777 (1121)
+||.||+.|+++|.++.++.|..||++. .|+
T Consensus 97 ~Le~yL~~l~~~p~l~~s~~l~~FL~~~--~~~ 127 (130)
T 3p0c_A 97 DLEVYLQKLLAAFPGVTPRVLAHFLHFH--FYE 127 (130)
T ss_dssp HHHHHHHHHHHTSCSEECHHHHHHHHSC--TTC
T ss_pred HHHHHHHHHHcChhhhcCHHHHHHhCCC--ccc
Confidence 9999999999999999999999999997 454
No 5
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.78 E-value=3.7e-19 Score=182.41 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=97.0
Q ss_pred eEEEEEecceEE---e-cCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHHc-c-----ccC-CCCCCCccc
Q 001221 665 KLRCEVLGANIV---K-SDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-F-----QEY-NLHLPPKHF 729 (1121)
Q Consensus 665 ~i~a~I~g~~~~---~-~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk~-~-----p~~-~p~LP~K~~ 729 (1121)
.+.+.|.+++.+ + ++++.|++|.|+|+.+ .+..|.|+|||+||..||++|++ | |.. +|+||+|++
T Consensus 35 ~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~ 114 (162)
T 1ocs_A 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKIL 114 (162)
T ss_dssp CEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCC
T ss_pred eEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCcc
Confidence 478888888888 6 7789999999999864 25789999999999999999994 8 775 899999998
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhcCCCCCC-Chhhhcccccc
Q 001221 730 LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSG-SIEVWDFLSVD 772 (1121)
Q Consensus 730 ~~~~~~~~flekRr~~Le~YLq~LL~~p~l~~-s~~l~~FL~~~ 772 (1121)
+.++++++|||+||++||.||+.|+++|.+++ ++.|+.||+.+
T Consensus 115 ~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 115 LSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence 75678999999999999999999999999998 99999999986
No 6
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.77 E-value=5.4e-19 Score=177.51 Aligned_cols=110 Identities=23% Similarity=0.335 Sum_probs=96.1
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc---------CCCCCCCccccCC
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLST 732 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~---------~~p~LP~K~~~~~ 732 (1121)
...+.|.|.+++... +...|++|.|+|+..++..|.|+|||+||++||++|++ ||. .+|+||+|+++ +
T Consensus 18 ~~~i~v~I~~~e~~~-~~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~-~ 95 (143)
T 1h6h_A 18 DVAISANIADIEEKR-GFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV-G 95 (143)
T ss_dssp TCEEEEEEEEEEEEC-SSSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS-S
T ss_pred CCeEEEEEcCccccC-CCCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCccc-C
Confidence 357899999887443 44689999999997767899999999999999999994 873 25999999998 6
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCC-CCCChhhhccccccccC
Q 001221 733 GLDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQT 775 (1121)
Q Consensus 733 ~~~~~flekRr~~Le~YLq~LL~~p~-l~~s~~l~~FL~~~~~~ 775 (1121)
+ +.+|+|+||.+||.||+.|+++|. +++|+.|++||+..+..
T Consensus 96 ~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~d 138 (143)
T 1h6h_A 96 V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYD 138 (143)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHH
T ss_pred c-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCccc
Confidence 6 899999999999999999999997 89999999999998644
No 7
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.77 E-value=6.6e-19 Score=172.03 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=93.3
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecCC-CeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHHH
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQE 741 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~-~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~flek 741 (1121)
.+.|.|.|.+....+++.|+ |.|+|+..++ ..|.|+|||+||.+||++|+ .||.. +|+||+|++++.+.+.+|+|+
T Consensus 5 i~~v~V~~~ek~~~~~k~y~-Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e~ 83 (121)
T 2ar5_A 5 IKEVSVFTYHKKYNPDKHYI-YVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAK 83 (121)
T ss_dssp EEEEEEEEEECCCSSSSCCE-EEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHHH
T ss_pred EEEEEECcEEEEecCCCcEE-EEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHHH
Confidence 45788898876665555555 9999999865 69999999999999999999 59985 899999999843447799999
Q ss_pred HHHHHHHHHHHhhcC-CCCCCChhhhccccccc
Q 001221 742 RCKLLDRYLKMLLQL-PTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 742 Rr~~Le~YLq~LL~~-p~l~~s~~l~~FL~~~~ 773 (1121)
||.+||.||+.|++. |.+++|+.++.||+++-
T Consensus 84 Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 84 RKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 999999999999997 68999999999999984
No 8
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.76 E-value=3.4e-19 Score=172.48 Aligned_cols=103 Identities=18% Similarity=0.354 Sum_probs=88.7
Q ss_pred eEEEEEecceEEec--CCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChHHHH
Q 001221 665 KLRCEVLGANIVKS--DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQ 740 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~--~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~fle 740 (1121)
.+.+.|.+++.+.+ |+++|++|.|.|. ..|.|+||||||..||++|++ ||.. +|+||+|+++ +++++|+|
T Consensus 3 ~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~----~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~--~~~~~~ie 76 (115)
T 3lui_A 3 AMHFSIPETESRSGDSGGSAYVAYNIHVN----GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLTPAEVE 76 (115)
T ss_dssp --CEEEEEEEEEC-----CCEEEEEEEET----TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSS--CCCHHHHH
T ss_pred cEEEEECCeEEecCCCCCCCEEEEEEEEC----CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCccc--CCCHHHHH
Confidence 35567777777654 6689999999984 379999999999999999995 8875 8999999997 38999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 741 kRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+||.+||.||+.|+++|.+++++.++.||+.++
T Consensus 77 ~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 109 (115)
T 3lui_A 77 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 109 (115)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChhhhcChHHHHHHCcCH
Confidence 999999999999999999999999999999874
No 9
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=171.04 Aligned_cols=99 Identities=23% Similarity=0.467 Sum_probs=89.4
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccC-CCCCCCccccCCCCChHHHHHH
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQER 742 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~-~p~LP~K~~~~~~~~~~flekR 742 (1121)
.+.+.|.+++++.++++.|++|.|+|+.+ +..|.|+||||||.+||++|++ ||.. .|+||+|+++ ++++++|+|+|
T Consensus 5 ~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~-~~~~~~~ie~R 82 (134)
T 2v14_A 5 PIKISIPRYVLCGQGKDAHFEFEVKITVL-DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLF-GNKDERVIAER 82 (134)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEET-TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSS-CTTSHHHHHHH
T ss_pred CEEEEECcEEEEecCCCCEEEEEEEEEEC-CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccc-cCCCHHHHHHH
Confidence 46788888888888889999999999986 7899999999999999999995 8875 8999999998 78999999999
Q ss_pred HHHHHHHHHHhhcCCC-CCCChhh
Q 001221 743 CKLLDRYLKMLLQLPT-VSGSIEV 765 (1121)
Q Consensus 743 r~~Le~YLq~LL~~p~-l~~s~~l 765 (1121)
|.+||.||+.|+++|. +++|+.+
T Consensus 83 r~~Le~yL~~ll~~~~~l~~sp~~ 106 (134)
T 2v14_A 83 RSHLEKYLRDFFSVMLQSATSPLH 106 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTC
T ss_pred HHHHHHHHHHHHhChHhhcCCHHH
Confidence 9999999999999986 7777743
No 10
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-19 Score=178.86 Aligned_cols=108 Identities=20% Similarity=0.401 Sum_probs=94.4
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHHc-ccc---CCCCCCCccccCC----
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-FQE---YNLHLPPKHFLST---- 732 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk~-~p~---~~p~LP~K~~~~~---- 732 (1121)
+|.+.|.+++.+++|+++|++|.|+|+.. .+..|.|.||||||..||++|++ ||. .+|+||+|+++..
T Consensus 3 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~ 82 (128)
T 2i4k_A 3 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 82 (128)
T ss_dssp SCCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCC
T ss_pred eEEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhh
Confidence 46677888888888889999999999864 25789999999999999999995 753 3799999998731
Q ss_pred -----CCChHHHHHHHHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 733 -----GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 733 -----~~~~~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
+++++|+|+||++||.||+.|+++|.+++++.++.||+.+
T Consensus 83 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 83 VGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 2489999999999999999999999999999999999875
No 11
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=170.45 Aligned_cols=104 Identities=21% Similarity=0.418 Sum_probs=92.7
Q ss_pred eeEEEEEecceEE---ecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHH
Q 001221 664 FKLRCEVLGANIV---KSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVI 739 (1121)
Q Consensus 664 ~~i~a~I~g~~~~---~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~fl 739 (1121)
.++++.++|.++. .++++.|++|.|+|+.. +..|.|.||||||.+||++|++ |+ +|+||+|+++ +++++|+
T Consensus 10 ~~~~~~~vg~ev~Ip~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYSdF~~Lh~~L~~~~~--iP~lP~K~~~--~~~~~~i 84 (128)
T 2ett_A 10 LEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCS-GRRHTVPRRYSEFHALHKRIKKLYK--VPDFPSKRLP--NWRTRGL 84 (128)
T ss_dssp EEEEEEEEESCCCCCSSCSSCCCCEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHTTSS--CCCCCCSSCC--CSSSSCH
T ss_pred ecccccEEeeEEEeccccCCCCEEEEEEEEEEC-CcEEEEECCHHHHHHHHHHHHHHCC--CCCCCCCccC--CCCHHHH
Confidence 5788999998873 34678999999999986 7799999999999999999995 65 6899999964 6899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
|+||.+||.||+.|+.+|.++ ++.+.+||+.+.
T Consensus 85 e~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~~ 117 (128)
T 2ett_A 85 EQRRQGLEAYIQGILYLNQEV-PKELLEFLRLRH 117 (128)
T ss_dssp HHHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhCchhc-CHHHHHhcCCcc
Confidence 999999999999999999877 799999999884
No 12
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=166.71 Aligned_cols=102 Identities=24% Similarity=0.400 Sum_probs=87.4
Q ss_pred eEEEEEecceEEecC-CCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCCCCCCccccCCCCChHHHHHH
Q 001221 665 KLRCEVLGANIVKSD-SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQER 742 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~-~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p~LP~K~~~~~~~~~~flekR 742 (1121)
.+.+.|.++.++.++ ++.|++|.|+|+.+ +..|.|+||||||.+||++|++ |+ .|+||+|.+ ++++++|||+|
T Consensus 22 ~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~-~~~w~V~RRYsdF~~L~~~L~~~~~--~p~lP~K~~--~~~~~~~ie~R 96 (129)
T 4az9_A 22 SMEVYIPSFRYEESDLERGYTVFKIEVLMN-GRKHFVEKRYSEFHALHKKLKKCIK--TPEIPSKHV--RNWVPKVLEQR 96 (129)
T ss_dssp CCEEEEEEEEEECCTTSCCEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHTTTSC--CCCCCCSCC--SCCCHHHHHHH
T ss_pred eeEEEECcEEEEecCCCCCEEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHhCC--CCCCCcccc--cCCCHHHHHHH
Confidence 456677777666554 57899999999986 7899999999999999999995 65 478898886 57899999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhcccccc
Q 001221 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1121)
Q Consensus 743 r~~Le~YLq~LL~~p~l~~s~~l~~FL~~~ 772 (1121)
|.+||.||+.|+.+|.++ +++|.+||+..
T Consensus 97 r~~Le~yL~~ll~~~~~~-~~~l~~FL~~~ 125 (129)
T 4az9_A 97 RQGLETYLQAVILENEEL-PKLFLDFLNVR 125 (129)
T ss_dssp HHHHHHHHHHHHHHCSSC-CHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCchhh-CHHHHHHCCCC
Confidence 999999999999999875 78999999986
No 13
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.73 E-value=8.9e-18 Score=168.30 Aligned_cols=108 Identities=25% Similarity=0.345 Sum_probs=92.4
Q ss_pred eEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc----------CCCCCCCccccCCC
Q 001221 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTG 733 (1121)
Q Consensus 665 ~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~----------~~p~LP~K~~~~~~ 733 (1121)
-..|.|.|.+....+ ..|++|.|+|+..++..|.|+|||+||++||++|++ ||. .+|+||+|+++ ++
T Consensus 6 i~~v~V~~~ek~~~~-~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~-~~ 83 (141)
T 1kq6_A 6 IRHIALLGFEKRFVP-SQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWF-DG 83 (141)
T ss_dssp EEEEEEEEEEEECSS-SCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCC-CS
T ss_pred EEEEEEccEEEecCC-CCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCcccc-CC
Confidence 457889988766544 456679999998778899999999999999999995 874 25899999988 43
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCC-CCCCChhhhccccccccCc
Q 001221 734 LDVSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSVDSQTY 776 (1121)
Q Consensus 734 ~~~~flekRr~~Le~YLq~LL~~p-~l~~s~~l~~FL~~~~~~y 776 (1121)
.+|+|+||.+||.||+.|+.+| .+++|++|++||+..+..+
T Consensus 84 --~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~d~ 125 (141)
T 1kq6_A 84 --QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDL 125 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcccc
Confidence 8999999999999999999987 4899999999999987554
No 14
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=171.43 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=96.3
Q ss_pred EEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc---------C-CCCCCCccccCCCCC
Q 001221 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------Y-NLHLPPKHFLSTGLD 735 (1121)
Q Consensus 667 ~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~---------~-~p~LP~K~~~~~~~~ 735 (1121)
++.|.|.+....+++.|++|.|+|++.++..|.|+|||+||++||++|++ ||. . +|.||+|++++.+.+
T Consensus 10 ~v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~~ 89 (149)
T 2l73_A 10 RYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGR 89 (149)
T ss_dssp CCEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCCH
T ss_pred EEEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccccc
Confidence 45677777777778899999999998878899999999999999999995 873 1 579999999843357
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCC-CCCChhhhccccccccCcc
Q 001221 736 VSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQTYA 777 (1121)
Q Consensus 736 ~~flekRr~~Le~YLq~LL~~p~-l~~s~~l~~FL~~~~~~y~ 777 (1121)
.+++|+|+.+||.||+.|++.|. +++|++|++||+..+..+.
T Consensus 90 ~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~ 132 (149)
T 2l73_A 90 TSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPLDLE 132 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCGGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCccccC
Confidence 89999999999999999998764 9999999999999987664
No 15
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.72 E-value=5e-18 Score=164.81 Aligned_cols=99 Identities=23% Similarity=0.282 Sum_probs=85.7
Q ss_pred EEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-cccCCC-CCCCccccC------CCCChH
Q 001221 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNL-HLPPKHFLS------TGLDVS 737 (1121)
Q Consensus 666 i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~~~p-~LP~K~~~~------~~~~~~ 737 (1121)
+.+.|.++.+ ++.|++|.|+| ..|.|.||||||..||++|++ |+..+| +||+|+++. ++++++
T Consensus 6 ~~v~I~~~~~----~~~~~~Y~I~v-----~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP~K~~~~~~~~~~~~~~~~ 76 (117)
T 1kmd_A 6 LRIKVDDVKI----NPKYVLYGVST-----PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPE 76 (117)
T ss_dssp CCCEEEEEEE----CSSCEEEEEEC-----SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTCHH
T ss_pred EEEEECCcee----cCCEEEEEEEE-----ceEEEEechHHHHHHHHHHHHHcCccCCCCCCCCCEecccccccCCCCHH
Confidence 4455666655 47899999999 379999999999999999995 786578 999999852 578999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC---CCChhhhccccccc
Q 001221 738 VIQERCKLLDRYLKMLLQLPTV---SGSIEVWDFLSVDS 773 (1121)
Q Consensus 738 flekRr~~Le~YLq~LL~~p~l---~~s~~l~~FL~~~~ 773 (1121)
|+|+||.+||.||+.|+++|.+ ++++++.+||+.++
T Consensus 77 ~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 77 MIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp HHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 9999999999999999999965 78999999999874
No 16
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.72 E-value=4.3e-18 Score=170.39 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=88.2
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecCC-CeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHH
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVI 739 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~-~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~fl 739 (1121)
...+.+.|.|.+....++ +|++|.|+|+..++ ..|.|+|||+||++||++|+ .||.. +|+||+|+++..+.+.+|+
T Consensus 18 ~~i~~v~I~~~ek~~~~~-k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~~~~~~~ 96 (140)
T 2iwl_X 18 GRIKEVSVFTYHKKYNPD-KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVA 96 (140)
T ss_dssp CCEEEEEEEEEEECCSSS-SCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC----------CCC
T ss_pred CeeEEEEECcEEEEecCC-CeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCccchHHHH
Confidence 445688999988666554 45569999998755 68999999999999999999 59985 8999999998333367899
Q ss_pred HHHHHHHHHHHHHhhc-CCCCCCChhhhccccccccC
Q 001221 740 QERCKLLDRYLKMLLQ-LPTVSGSIEVWDFLSVDSQT 775 (1121)
Q Consensus 740 ekRr~~Le~YLq~LL~-~p~l~~s~~l~~FL~~~~~~ 775 (1121)
|+||.+||.||+.|++ ++.+++|+.|++||+..+..
T Consensus 97 e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~D 133 (140)
T 2iwl_X 97 AKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLRD 133 (140)
T ss_dssp CHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCCTTT
T ss_pred HHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCCCCC
Confidence 9999999999999999 57899999999999987543
No 17
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.67 E-value=1.9e-16 Score=160.94 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=91.5
Q ss_pred ccceeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHHc-ccc--------------C-CCCC
Q 001221 661 DSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE--------------Y-NLHL 724 (1121)
Q Consensus 661 ~~~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk~-~p~--------------~-~p~L 724 (1121)
+....+.|.|.+.... ++ +.+|.|.|+..++..|.|+|||+||++||.+|++ ||. . +|.|
T Consensus 14 ~~~~~~~~sI~~~~~~---~~-~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~L 89 (156)
T 2v6v_A 14 DGELLVKASVESFGLE---DE-KYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYI 89 (156)
T ss_dssp TTCCEEEEEEEEEEEE---TT-EEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCC
T ss_pred CCCcceEEEEeeEEEE---CC-EEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCC
Confidence 4456788999876554 23 4459999999778899999999999999999994 863 2 5789
Q ss_pred CCccccCCCCChHHHHHHHHHHHHHHHHhhcCC-CCCCChhhhccccccccCc
Q 001221 725 PPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSVDSQTY 776 (1121)
Q Consensus 725 P~K~~~~~~~~~~flekRr~~Le~YLq~LL~~p-~l~~s~~l~~FL~~~~~~y 776 (1121)
|+|.++ . +.+|+|+||.+||.||+.|+..| .++.|+.|++||...+..+
T Consensus 90 P~K~~~-~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~ 139 (156)
T 2v6v_A 90 PGPVPY-V--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGF 139 (156)
T ss_dssp CCCCSS-C--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSS
T ss_pred CCCccc-C--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCccc
Confidence 999987 2 57999999999999999999955 6999999999999987554
No 18
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.63 E-value=1e-16 Score=184.65 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=86.8
Q ss_pred cceeEEEEEecceEEe--cCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-cccc-C-CCCCCCccccCCCCCh
Q 001221 662 SFFKLRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQE-Y-NLHLPPKHFLSTGLDV 736 (1121)
Q Consensus 662 ~~~~i~a~I~g~~~~~--~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~-~-~p~LP~K~~~~~~~~~ 736 (1121)
....+.+.|.+++.++ .|.+.|++|.|.++. ..|.|+||||||..||.+|. .||. . +|+||+|+++ +++++
T Consensus 17 ~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~-g~~~~ 92 (366)
T 3dyt_A 17 PTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN---TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT-GRFEE 92 (366)
T ss_dssp CSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT---CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-----------
T ss_pred CCCCeEEEEcCceeecCCCCCcCeEEEEEEEec---CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCccc-CCCCH
Confidence 3456778889988775 677899999999875 37999999999999999999 5998 5 8999999998 78999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 737 ~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+|+|+||.+||.||+.|+.||.+++++.|+.||+.++
T Consensus 93 ~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 93 EFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD 129 (366)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCc
Confidence 9999999999999999999999999999999999864
No 19
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.63 E-value=9.1e-17 Score=186.13 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=84.5
Q ss_pred ccceeEEEEEecceEEe--cCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCCh
Q 001221 661 DSFFKLRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDV 736 (1121)
Q Consensus 661 ~~~~~i~a~I~g~~~~~--~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~ 736 (1121)
.....+.+.|.++..++ +|.++|++|.|.++.. .|.|+||||||..||.+|. .||.. +|+||+|+++ +++++
T Consensus 37 ~~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~~---~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~-g~~~~ 112 (386)
T 4akv_A 37 ANPHPFACSVEDPTKQTKFKGIKSYISYKLTPTHA---ASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT-GRFEE 112 (386)
T ss_dssp CCSSCCCEEEECC------------CCEEEEETTS---SSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC-------C
T ss_pred cCCCCeEEEEcCceEecCCCCCcCeEEEEEEEEeC---CeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCccc-CCCCH
Confidence 33456788899998876 6778999999999753 6999999999999999999 59985 8999999998 78999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChhhhccccccc
Q 001221 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1121)
Q Consensus 737 ~flekRr~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~ 773 (1121)
+|||+||.+||.||+.|+.+|.++.++.|+.||+.++
T Consensus 113 ~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 113 DFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp CTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC
Confidence 9999999999999999999999999999999999863
No 20
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=145.34 Aligned_cols=101 Identities=28% Similarity=0.377 Sum_probs=83.5
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-ccccC-CCCCCCccccCCCCChHHHH
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEY-NLHLPPKHFLSTGLDVSVIQ 740 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~~-~p~LP~K~~~~~~~~~~fle 740 (1121)
.....|.|+|. .+. +...|+|+|++.++..|.|+|||+||++||++|+ .||.. +|+||+|+++. +...-++
T Consensus 23 ~~i~~~~v~~~--~k~---~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~--~t~~~~e 95 (127)
T 2wwe_A 23 MSIERATILGF--SKK---SSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP--FTNSDHR 95 (127)
T ss_dssp SSEEEEEEEEE--ETT---EEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH--HHHCHHH
T ss_pred CcEEEEEEEEE--Eec---ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC--cCHHHHH
Confidence 33457888865 222 4456999999988899999999999999999999 59985 89999999762 2333455
Q ss_pred HHHHHHHHHHHHhhc-CCCCCCChhhhccccc
Q 001221 741 ERCKLLDRYLKMLLQ-LPTVSGSIEVWDFLSV 771 (1121)
Q Consensus 741 kRr~~Le~YLq~LL~-~p~l~~s~~l~~FL~~ 771 (1121)
||++||.||+.|++ ++.+++|+.|.+||..
T Consensus 96 -Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 96 -RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp -HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 99999999999999 6999999999999865
No 21
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.54 E-value=9.9e-15 Score=148.83 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=89.2
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEec----CCCeeEEEeccchHHHHHHHHHc---cccC-CCCCCCccccC---
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF---FQEY-NLHLPPKHFLS--- 731 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~----~~~~w~V~RRYsdF~~Lh~~Lk~---~p~~-~p~LP~K~~~~--- 731 (1121)
...+.|.|.++...++ |++|.|.++.+ .+..|.|.|||+||..||.+|.+ ||+. +|+||+|.++.
T Consensus 9 ~~~l~i~V~dp~~~~~----~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~ 84 (161)
T 3hpc_X 9 DPSLQIDIPDALSERD----KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPR 84 (161)
T ss_dssp SCSEEEEEEEEEEETT----EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHH
T ss_pred CCeEEEEECCCeEecC----CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchh
Confidence 3458888988865533 89999999875 25689999999999999999994 7875 89999999762
Q ss_pred ----------CCC------------ChHHHHHHH---HHHHHHHHHhhcCCCCCCChhhhcccccccc
Q 001221 732 ----------TGL------------DVSVIQERC---KLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1121)
Q Consensus 732 ----------~~~------------~~~flekRr---~~Le~YLq~LL~~p~l~~s~~l~~FL~~~~~ 774 (1121)
+++ +++|||+|| .+||.||+.|++||.+++++.|+.||+.+.+
T Consensus 85 ~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 85 EKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSC
T ss_pred hhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCcc
Confidence 133 467999654 5699999999999999999999999998853
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=153.05 Aligned_cols=110 Identities=23% Similarity=0.333 Sum_probs=93.9
Q ss_pred ceeEEEEEecceEEecCCCceEEEEEEEEecCCCeeEEEeccchHHHHHHHHH-cccc---------CCCCCCCccccCC
Q 001221 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQE---------YNLHLPPKHFLST 732 (1121)
Q Consensus 663 ~~~i~a~I~g~~~~~~~~k~y~vY~I~V~~~~~~~w~V~RRYsdF~~Lh~~Lk-~~p~---------~~p~LP~K~~~~~ 732 (1121)
...+.|.|.+.+..... .+|++|.|+|+..++..|.|+|||+||++||.+|+ .||. .+|.||+|+++ +
T Consensus 21 ~~~~~v~I~~~~~~~~~-~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~-~ 98 (341)
T 2dyb_A 21 DVAISANIADIEEKRGF-TSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYV-G 98 (341)
T ss_dssp TSEEEEEEEEEEEEESS-SEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCC-S
T ss_pred CCcEEEEECCeEEecCC-CcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCcccc-C
Confidence 34678888887755444 46889999999877889999999999999999999 4873 26899999998 4
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCC-CCCChhhhccccccccC
Q 001221 733 GLDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQT 775 (1121)
Q Consensus 733 ~~~~~flekRr~~Le~YLq~LL~~p~-l~~s~~l~~FL~~~~~~ 775 (1121)
+ ..+++|+|+..|+.||+.|+..|. ++.|+.|+.||.+....
T Consensus 99 ~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~d 141 (341)
T 2dyb_A 99 V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYD 141 (341)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHHH
T ss_pred c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccc
Confidence 4 788999999999999999999986 99999999999987643
Done!