Query 001222
Match_columns 1120
No_of_seqs 677 out of 5498
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 19:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10841 hybrid sensory kinase 100.0 5.9E-59 1.3E-63 596.5 75.1 484 428-1111 437-920 (924)
2 PRK11107 hybrid sensory histid 100.0 7.2E-58 1.6E-62 593.9 77.8 502 429-1111 284-788 (919)
3 PRK15347 two component system 100.0 2E-56 4.2E-61 580.6 69.2 424 428-1109 388-811 (921)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 3.3E-53 7.1E-58 553.3 56.5 370 428-1110 454-823 (968)
5 PRK11091 aerobic respiration c 100.0 1.6E-52 3.5E-57 534.3 48.7 370 430-1111 275-646 (779)
6 PRK11466 hybrid sensory histid 100.0 2.6E-51 5.6E-56 532.3 56.4 364 430-1111 436-801 (914)
7 PRK09959 hybrid sensory histid 100.0 2.5E-47 5.4E-52 508.0 49.9 375 427-1109 701-1075(1197)
8 KOG0519 Sensory transduction h 100.0 7.7E-48 1.7E-52 481.6 15.7 579 409-1109 190-785 (786)
9 PRK10618 phosphotransfer inter 100.0 2.6E-44 5.6E-49 455.3 45.8 235 427-700 439-673 (894)
10 PRK13837 two-component VirA-li 100.0 3.2E-42 6.9E-47 441.0 53.8 367 436-1111 448-815 (828)
11 COG5002 VicK Signal transducti 100.0 9.2E-41 2E-45 358.8 19.5 224 437-701 224-450 (459)
12 COG2205 KdpD Osmosensitive K+ 100.0 4.2E-37 9.2E-42 363.4 34.2 228 430-702 652-882 (890)
13 PRK13557 histidine kinase; Pro 100.0 1.5E-35 3.3E-40 361.4 48.3 368 438-1111 163-536 (540)
14 PRK09303 adaptive-response sen 100.0 4.4E-35 9.6E-40 343.2 32.9 233 426-700 139-378 (380)
15 PRK11006 phoR phosphate regulo 100.0 9.5E-33 2.1E-37 328.9 29.7 221 437-700 203-424 (430)
16 COG4191 Signal transduction hi 100.0 5.6E-30 1.2E-34 295.7 50.2 211 439-699 385-601 (603)
17 PRK10604 sensor protein RstB; 100.0 1.1E-31 2.4E-36 320.0 35.8 222 431-702 205-426 (433)
18 PRK10815 sensor protein PhoQ; 100.0 8.8E-31 1.9E-35 315.9 38.5 217 435-700 263-479 (485)
19 PRK10364 sensor protein ZraS; 100.0 3.2E-30 7E-35 309.6 43.2 214 437-701 236-450 (457)
20 PRK09835 sensor kinase CusS; P 100.0 8.7E-30 1.9E-34 307.1 46.1 224 432-699 256-480 (482)
21 TIGR03785 marine_sort_HK prote 100.0 7.1E-30 1.5E-34 320.0 45.2 224 431-698 478-703 (703)
22 PRK10549 signal transduction h 100.0 2.7E-30 5.8E-35 310.4 37.6 228 431-702 233-461 (466)
23 TIGR01386 cztS_silS_copS heavy 100.0 7.9E-30 1.7E-34 304.8 35.4 219 435-698 238-457 (457)
24 PRK09470 cpxA two-component se 100.0 4.4E-29 9.5E-34 299.1 41.6 222 432-700 237-458 (461)
25 PRK10755 sensor protein BasS/P 100.0 1.4E-29 3.1E-34 293.8 35.0 216 434-700 133-351 (356)
26 PRK10490 sensor protein KdpD; 100.0 3.7E-30 8.1E-35 329.6 31.6 226 432-702 658-885 (895)
27 TIGR02938 nifL_nitrog nitrogen 100.0 6E-30 1.3E-34 307.7 30.6 214 436-699 274-494 (494)
28 PRK11100 sensory histidine kin 100.0 5.6E-28 1.2E-32 290.1 43.4 220 436-700 254-474 (475)
29 PRK10337 sensor protein QseC; 100.0 2.7E-28 5.9E-33 291.9 38.2 215 435-697 234-449 (449)
30 PRK09467 envZ osmolarity senso 100.0 2.9E-28 6.3E-33 290.3 34.2 214 430-700 221-434 (435)
31 COG3852 NtrB Signal transducti 100.0 1.4E-28 3E-33 262.5 24.6 222 436-701 130-356 (363)
32 COG4251 Bacteriophytochrome (l 100.0 3.5E-28 7.6E-33 279.3 25.6 230 427-702 513-744 (750)
33 TIGR02966 phoR_proteo phosphat 100.0 7.4E-28 1.6E-32 274.3 27.8 219 437-697 113-333 (333)
34 PRK11073 glnL nitrogen regulat 100.0 1.9E-26 4E-31 266.6 29.3 217 437-699 129-347 (348)
35 COG0642 BaeS Signal transducti 99.9 9E-25 2E-29 246.4 30.2 217 437-701 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 5.9E-25 1.3E-29 270.9 31.1 213 438-701 390-603 (607)
37 TIGR02916 PEP_his_kin putative 99.9 6.7E-24 1.5E-28 266.8 28.1 203 438-698 475-679 (679)
38 PRK11086 sensory histidine kin 99.9 3.8E-22 8.3E-27 244.2 39.8 194 439-701 340-537 (542)
39 PRK13560 hypothetical protein; 99.9 1.3E-23 2.8E-28 269.1 25.6 208 427-701 594-805 (807)
40 COG5000 NtrY Signal transducti 99.9 6.4E-22 1.4E-26 227.8 29.0 206 441-699 489-708 (712)
41 PRK11644 sensory histidine kin 99.9 2E-21 4.4E-26 234.9 30.4 196 435-699 299-494 (495)
42 PRK15053 dpiB sensor histidine 99.9 5E-21 1.1E-25 235.1 26.6 196 440-701 340-541 (545)
43 COG4192 Signal transduction hi 99.9 7E-20 1.5E-24 203.4 27.3 210 440-699 453-666 (673)
44 COG0745 OmpR Response regulato 99.9 5.4E-21 1.2E-25 207.4 17.3 121 965-1113 1-121 (229)
45 COG3290 CitA Signal transducti 99.8 1.8E-17 3.8E-22 191.9 37.3 194 440-701 335-533 (537)
46 PRK13559 hypothetical protein; 99.8 3.5E-18 7.6E-23 198.8 23.2 186 437-700 169-360 (361)
47 PF02518 HATPase_c: Histidine 99.8 7.9E-19 1.7E-23 169.1 12.7 110 550-700 1-111 (111)
48 PRK10935 nitrate/nitrite senso 99.8 8.1E-17 1.8E-21 198.6 26.8 194 441-701 363-561 (565)
49 COG3706 PleD Response regulato 99.7 2.8E-16 6E-21 181.6 21.4 123 964-1112 132-254 (435)
50 COG3437 Response regulator con 99.7 2.7E-17 5.8E-22 181.7 12.5 121 963-1108 13-133 (360)
51 COG4753 Response regulator con 99.7 7.6E-17 1.6E-21 187.0 13.9 118 965-1110 2-122 (475)
52 PRK10600 nitrate/nitrite senso 99.7 1.9E-15 4.1E-20 186.9 27.2 184 450-701 374-558 (569)
53 PF00072 Response_reg: Respons 99.7 3E-16 6.5E-21 150.4 15.7 111 967-1105 1-112 (112)
54 COG2204 AtoC Response regulato 99.7 2.5E-16 5.4E-21 183.3 16.2 118 965-1110 5-122 (464)
55 COG0784 CheY FOG: CheY-like re 99.7 1.1E-15 2.3E-20 150.5 16.5 121 963-1110 4-126 (130)
56 COG4566 TtrR Response regulato 99.6 3E-15 6.5E-20 151.4 13.5 120 964-1111 4-123 (202)
57 COG2197 CitB Response regulato 99.6 5.5E-15 1.2E-19 159.0 16.5 119 965-1111 1-121 (211)
58 COG4565 CitB Response regulato 99.6 5.5E-15 1.2E-19 152.4 14.4 118 965-1110 1-120 (224)
59 PRK10547 chemotaxis protein Ch 99.6 1E-13 2.2E-18 170.4 25.4 145 513-701 344-525 (670)
60 PLN03029 type-a response regul 99.6 1.8E-14 4E-19 156.4 16.6 136 964-1107 8-145 (222)
61 PRK09581 pleD response regulat 99.6 2.3E-13 5.1E-18 162.7 25.1 119 964-1109 155-273 (457)
62 PRK10046 dpiA two-component re 99.6 5.1E-14 1.1E-18 153.3 17.0 117 964-1108 4-122 (225)
63 PRK10816 DNA-binding transcrip 99.5 9.2E-14 2E-18 149.9 17.3 119 965-1111 1-119 (223)
64 PRK11173 two-component respons 99.5 1E-13 2.3E-18 151.3 17.4 118 965-1111 4-121 (237)
65 PRK10529 DNA-binding transcrip 99.5 1.3E-13 2.7E-18 148.9 17.2 118 965-1111 2-119 (225)
66 PRK09836 DNA-binding transcrip 99.5 1.6E-13 3.4E-18 148.5 17.4 119 965-1111 1-119 (227)
67 COG3947 Response regulator con 99.5 2.5E-14 5.4E-19 152.6 10.2 117 965-1111 1-117 (361)
68 PRK10643 DNA-binding transcrip 99.5 3.6E-13 7.9E-18 144.4 17.8 119 965-1111 1-119 (222)
69 PRK10766 DNA-binding transcrip 99.5 2.8E-13 6.1E-18 145.8 16.9 118 965-1111 3-120 (221)
70 PRK09468 ompR osmolarity respo 99.5 3.6E-13 7.8E-18 147.0 17.7 120 964-1111 5-124 (239)
71 PRK10161 transcriptional regul 99.5 4.7E-13 1E-17 145.0 17.4 121 965-1111 3-123 (229)
72 TIGR02154 PhoB phosphate regul 99.5 6.5E-13 1.4E-17 142.7 17.9 121 965-1111 3-123 (226)
73 PRK13856 two-component respons 99.5 5.1E-13 1.1E-17 146.5 16.9 117 966-1111 3-120 (241)
74 PRK10701 DNA-binding transcrip 99.5 5.6E-13 1.2E-17 145.7 17.2 117 966-1111 3-119 (240)
75 PRK10430 DNA-binding transcrip 99.5 5.1E-13 1.1E-17 146.7 16.8 117 965-1107 2-120 (239)
76 PRK10336 DNA-binding transcrip 99.5 6.5E-13 1.4E-17 142.3 17.0 119 965-1111 1-119 (219)
77 PRK10955 DNA-binding transcrip 99.5 6E-13 1.3E-17 144.1 16.8 116 966-1111 3-118 (232)
78 PRK04184 DNA topoisomerase VI 99.5 5.4E-13 1.2E-17 158.7 17.4 117 548-701 30-154 (535)
79 TIGR02875 spore_0_A sporulatio 99.5 6.3E-13 1.4E-17 147.9 16.9 121 964-1110 2-124 (262)
80 PRK11517 transcriptional regul 99.5 9.2E-13 2E-17 141.7 17.2 118 965-1111 1-118 (223)
81 TIGR03787 marine_sort_RR prote 99.5 1.1E-12 2.4E-17 141.7 17.2 118 966-1111 2-121 (227)
82 PRK11083 DNA-binding response 99.4 1.9E-12 4.1E-17 139.5 16.8 119 965-1111 4-122 (228)
83 TIGR01387 cztR_silR_copR heavy 99.4 2.8E-12 6.1E-17 137.1 17.1 117 967-1111 1-117 (218)
84 PRK10840 transcriptional regul 99.4 2.7E-12 5.8E-17 138.7 16.5 119 964-1110 3-126 (216)
85 CHL00148 orf27 Ycf27; Reviewed 99.4 3.3E-12 7.3E-17 139.0 17.4 119 964-1111 6-124 (240)
86 PRK09958 DNA-binding transcrip 99.4 3.8E-12 8.2E-17 135.1 16.4 118 965-1110 1-119 (204)
87 PRK14084 two-component respons 99.4 4.4E-12 9.6E-17 139.6 16.7 116 965-1110 1-118 (246)
88 smart00387 HATPase_c Histidine 99.4 4.5E-12 9.8E-17 119.5 14.3 109 550-699 1-110 (111)
89 COG4567 Response regulator con 99.4 3.4E-12 7.4E-17 124.1 11.9 114 966-1107 11-124 (182)
90 PRK10923 glnG nitrogen regulat 99.4 6.1E-12 1.3E-16 152.1 16.9 117 965-1109 4-120 (469)
91 PRK15115 response regulator Gl 99.4 5.1E-12 1.1E-16 151.6 15.7 119 964-1110 5-123 (444)
92 PRK09483 response regulator; P 99.4 1.1E-11 2.5E-16 132.8 16.7 118 965-1110 2-121 (217)
93 PRK12555 chemotaxis-specific m 99.4 6.8E-12 1.5E-16 145.1 15.8 117 965-1110 1-130 (337)
94 PRK10365 transcriptional regul 99.4 5.1E-12 1.1E-16 151.4 14.6 118 964-1109 5-122 (441)
95 PRK10360 DNA-binding transcrip 99.4 1.3E-11 2.8E-16 130.1 15.9 115 965-1110 2-118 (196)
96 PRK09935 transcriptional regul 99.4 1.9E-11 4E-16 130.0 17.1 120 964-1111 3-124 (210)
97 PRK11361 acetoacetate metaboli 99.3 1.1E-11 2.4E-16 149.3 16.7 118 964-1109 4-121 (457)
98 PRK11697 putative two-componen 99.3 1.2E-11 2.6E-16 135.2 15.5 115 965-1110 2-118 (238)
99 TIGR02915 PEP_resp_reg putativ 99.3 8.9E-12 1.9E-16 149.6 15.8 113 967-1109 1-118 (445)
100 PRK15479 transcriptional regul 99.3 3.1E-11 6.8E-16 129.3 17.5 119 965-1111 1-119 (221)
101 PRK10710 DNA-binding transcrip 99.3 3.2E-11 6.9E-16 131.3 17.7 118 965-1111 11-128 (240)
102 TIGR01818 ntrC nitrogen regula 99.3 1.4E-11 3E-16 148.7 15.6 115 967-1109 1-115 (463)
103 PF00512 HisKA: His Kinase A ( 99.3 1.5E-11 3.2E-16 107.7 9.9 67 437-503 1-68 (68)
104 PRK00742 chemotaxis-specific m 99.3 4.9E-11 1.1E-15 139.0 16.5 117 964-1109 3-132 (354)
105 PRK10100 DNA-binding transcrip 99.3 3.9E-11 8.5E-16 129.6 14.4 114 964-1110 10-127 (216)
106 COG2201 CheB Chemotaxis respon 99.3 4.6E-11 9.9E-16 134.6 15.0 103 965-1096 2-108 (350)
107 PRK09390 fixJ response regulat 99.3 4.8E-11 1E-15 125.2 14.1 119 964-1110 3-121 (202)
108 PRK14868 DNA topoisomerase VI 99.2 4E-11 8.8E-16 145.0 14.0 128 530-698 21-160 (795)
109 PRK09581 pleD response regulat 99.2 1.1E-10 2.3E-15 139.8 17.3 118 966-1109 4-121 (457)
110 TIGR01052 top6b DNA topoisomer 99.2 3.7E-11 8.1E-16 141.7 12.7 106 548-693 22-134 (488)
111 PRK10610 chemotaxis regulatory 99.2 4.1E-10 9E-15 107.7 16.9 122 964-1111 5-127 (129)
112 PRK11475 DNA-binding transcrip 99.2 1.2E-10 2.5E-15 125.1 13.3 107 977-1111 3-116 (207)
113 PRK13435 response regulator; P 99.2 4E-10 8.6E-15 113.5 16.1 116 964-1111 5-122 (145)
114 PRK13558 bacterio-opsin activa 99.2 1.2E-10 2.5E-15 147.1 14.5 118 964-1109 7-126 (665)
115 PRK15369 two component system 99.2 5.4E-10 1.2E-14 117.8 16.8 119 964-1110 3-123 (211)
116 PRK10403 transcriptional regul 99.2 4.7E-10 1E-14 119.2 16.4 118 965-1110 7-126 (215)
117 PRK14867 DNA topoisomerase VI 99.2 1.2E-10 2.6E-15 141.2 13.1 114 549-701 28-151 (659)
118 PRK10651 transcriptional regul 99.2 5E-10 1.1E-14 119.2 16.4 119 964-1110 6-126 (216)
119 cd00075 HATPase_c Histidine ki 99.2 2.2E-10 4.7E-15 106.2 11.8 101 555-697 1-103 (103)
120 COG3707 AmiR Response regulato 99.1 2.5E-10 5.5E-15 117.0 11.9 116 964-1108 5-121 (194)
121 PRK15411 rcsA colanic acid cap 99.1 4.4E-10 9.6E-15 120.8 14.4 117 966-1111 2-124 (207)
122 COG0643 CheA Chemotaxis protei 99.1 2.3E-09 5E-14 132.8 18.8 140 516-701 394-575 (716)
123 TIGR01925 spIIAB anti-sigma F 99.1 8.1E-10 1.8E-14 110.7 12.1 97 550-696 35-135 (137)
124 PRK09191 two-component respons 99.1 2.3E-09 5.1E-14 118.9 15.9 117 964-1111 137-255 (261)
125 PRK10693 response regulator of 99.0 1.1E-09 2.4E-14 124.7 12.3 89 993-1109 2-91 (303)
126 COG4585 Signal transduction hi 99.0 2.4E-07 5.3E-12 108.5 30.4 114 527-699 252-365 (365)
127 PRK03660 anti-sigma F factor; 99.0 3.2E-09 7E-14 107.5 12.5 103 550-702 35-141 (146)
128 COG3851 UhpB Signal transducti 98.9 5.1E-07 1.1E-11 99.7 27.3 194 435-698 300-493 (497)
129 cd00156 REC Signal receiver do 98.9 1.4E-08 3E-13 92.8 13.2 112 968-1107 1-112 (113)
130 COG2972 Predicted signal trans 98.8 1.5E-06 3.2E-11 104.9 28.3 186 437-700 258-453 (456)
131 COG3920 Signal transduction hi 98.8 1.4E-06 2.9E-11 94.6 24.9 192 437-701 18-217 (221)
132 KOG0519 Sensory transduction h 98.8 1E-07 2.3E-12 121.0 18.2 391 426-868 374-783 (786)
133 PRK15029 arginine decarboxylas 98.8 4.3E-08 9.4E-13 122.1 13.2 108 965-1100 1-122 (755)
134 COG3279 LytT Response regulato 98.7 3.3E-08 7.2E-13 108.9 10.0 115 965-1109 2-118 (244)
135 COG3850 NarQ Signal transducti 98.6 8.6E-06 1.9E-10 95.1 26.5 185 444-698 375-567 (574)
136 COG4564 Signal transduction hi 98.6 3.4E-05 7.4E-10 84.6 28.7 185 451-701 264-449 (459)
137 PRK04069 serine-protein kinase 98.6 3.4E-07 7.5E-12 94.5 12.4 102 551-700 39-144 (161)
138 KOG0787 Dehydrogenase kinase [ 98.5 7.8E-06 1.7E-10 91.4 19.1 182 475-699 175-380 (414)
139 COG3275 LytS Putative regulato 98.4 2.6E-05 5.6E-10 89.7 22.9 130 509-701 414-553 (557)
140 smart00388 HisKA His Kinase A 98.4 9.1E-07 2E-11 75.3 8.4 64 438-502 2-65 (66)
141 PRK15426 putative diguanylate 98.4 4.7E-05 1E-09 94.5 26.6 72 217-292 220-294 (570)
142 TIGR01924 rsbW_low_gc serine-p 98.4 3.5E-06 7.5E-11 86.9 12.0 101 552-700 40-144 (159)
143 PF14501 HATPase_c_5: GHKL dom 98.2 1.8E-05 4E-10 74.9 12.5 92 551-697 2-97 (100)
144 PRK11107 hybrid sensory histid 98.2 1.4E-05 3E-10 104.9 15.1 118 961-1108 533-650 (919)
145 cd00082 HisKA Histidine Kinase 98.2 9.3E-06 2E-10 68.4 8.5 62 438-499 4-65 (65)
146 COG3706 PleD Response regulato 98.2 1.8E-06 3.8E-11 100.9 5.3 93 989-1111 13-105 (435)
147 PF02743 Cache_1: Cache domain 98.0 3.4E-06 7.3E-11 76.6 3.3 71 220-293 1-72 (81)
148 TIGR00585 mutl DNA mismatch re 97.8 9.8E-05 2.1E-09 84.7 11.6 97 553-696 21-125 (312)
149 COG1389 DNA topoisomerase VI, 97.6 0.00017 3.6E-09 82.8 8.7 115 550-703 32-154 (538)
150 PF13581 HATPase_c_2: Histidin 97.4 0.0009 1.9E-08 65.7 10.0 93 551-696 28-124 (125)
151 smart00448 REC cheY-homologous 96.7 0.0099 2.1E-07 46.0 8.1 55 965-1042 1-55 (55)
152 PF06490 FleQ: Flagellar regul 96.5 0.015 3.2E-07 56.1 9.6 106 966-1107 1-107 (109)
153 PRK00095 mutL DNA mismatch rep 96.3 0.016 3.5E-07 72.5 10.5 88 553-687 21-114 (617)
154 COG2172 RsbW Anti-sigma regula 96.1 0.054 1.2E-06 55.0 11.1 94 550-693 36-134 (146)
155 cd02071 MM_CoA_mut_B12_BD meth 95.2 0.47 1E-05 46.6 13.9 107 971-1105 10-121 (122)
156 PF13589 HATPase_c_3: Histidin 94.9 0.021 4.6E-07 57.3 3.3 66 627-697 35-105 (137)
157 PRK02261 methylaspartate mutas 94.8 0.5 1.1E-05 47.5 12.9 118 964-1109 3-135 (137)
158 TIGR00640 acid_CoA_mut_C methy 94.0 1.7 3.7E-05 43.4 14.7 112 971-1108 13-127 (132)
159 cd02067 B12-binding B12 bindin 92.6 1.5 3.3E-05 42.6 11.6 95 971-1093 10-109 (119)
160 PRK05559 DNA topoisomerase IV 91.2 0.39 8.4E-06 60.4 7.1 83 551-676 34-131 (631)
161 TIGR01055 parE_Gneg DNA topois 91.2 0.26 5.5E-06 61.8 5.4 50 627-676 63-124 (625)
162 PF03709 OKR_DC_1_N: Orn/Lys/A 89.7 2.8 6.1E-05 40.8 10.1 103 978-1108 7-112 (115)
163 TIGR03815 CpaE_hom_Actino heli 89.7 0.99 2.1E-05 52.1 8.2 85 988-1108 1-86 (322)
164 COG4999 Uncharacterized domain 88.2 1.7 3.6E-05 41.9 7.0 113 961-1105 8-122 (140)
165 PRK05218 heat shock protein 90 88.0 1.8 4E-05 54.3 9.4 57 627-687 74-142 (613)
166 TIGR01059 gyrB DNA gyrase, B s 87.9 0.84 1.8E-05 57.8 6.5 82 551-675 27-123 (654)
167 COG5381 Uncharacterized protei 86.8 1.8 3.8E-05 43.1 6.5 24 557-580 66-89 (184)
168 TIGR01501 MthylAspMutase methy 86.6 12 0.00027 37.4 12.5 109 973-1109 14-133 (134)
169 COG2185 Sbm Methylmalonyl-CoA 86.4 17 0.00036 36.8 13.2 120 964-1109 12-138 (143)
170 PRK05644 gyrB DNA gyrase subun 86.3 1.2 2.7E-05 56.0 6.6 82 551-675 34-130 (638)
171 cd02072 Glm_B12_BD B12 binding 85.9 13 0.00028 37.0 12.1 105 973-1105 12-127 (128)
172 PRK14083 HSP90 family protein; 85.8 0.93 2E-05 56.5 5.1 46 627-672 64-116 (601)
173 cd04728 ThiG Thiazole synthase 85.4 8 0.00017 42.5 11.2 90 983-1108 118-224 (248)
174 COG0323 MutL DNA mismatch repa 85.1 1 2.2E-05 56.7 5.0 27 627-653 54-80 (638)
175 PRK00208 thiG thiazole synthas 84.9 8.6 0.00019 42.3 11.3 90 983-1108 118-224 (250)
176 PF02310 B12-binding: B12 bind 84.1 7.5 0.00016 37.5 9.7 93 973-1094 13-112 (121)
177 PF00072 Response_reg: Respons 83.8 20 0.00044 33.4 12.4 109 719-865 2-111 (112)
178 PRK11677 hypothetical protein; 81.0 16 0.00035 36.5 10.6 78 395-488 8-85 (134)
179 cd02070 corrinoid_protein_B12- 80.2 19 0.00041 38.6 11.8 99 965-1092 83-190 (201)
180 PTZ00130 heat shock protein 90 78.8 2.9 6.2E-05 53.4 5.7 46 627-672 136-192 (814)
181 PRK15399 lysine decarboxylase 78.1 17 0.00037 46.2 12.1 99 966-1094 2-106 (713)
182 PTZ00272 heat shock protein 83 75.9 2.8 6.1E-05 53.1 4.5 20 627-646 73-92 (701)
183 PRK15400 lysine decarboxylase 75.7 19 0.00042 45.8 11.7 79 966-1074 2-86 (714)
184 COG0745 OmpR Response regulato 75.6 35 0.00076 37.4 12.4 116 718-871 3-118 (229)
185 PRK09426 methylmalonyl-CoA mut 73.4 29 0.00063 44.5 12.5 117 965-1109 583-708 (714)
186 cd02069 methionine_synthase_B1 72.9 29 0.00064 37.6 10.9 101 965-1093 89-201 (213)
187 PRK00043 thiE thiamine-phospha 72.6 49 0.0011 35.3 12.6 73 1031-1109 124-209 (212)
188 smart00433 TOP2c Topoisomerase 71.4 4.8 0.0001 50.5 5.0 48 627-674 34-93 (594)
189 PRK00278 trpC indole-3-glycero 68.9 84 0.0018 35.2 13.7 96 968-1092 139-239 (260)
190 COG5385 Uncharacterized protei 66.1 1.7E+02 0.0036 30.3 17.5 185 441-688 18-204 (214)
191 PRK01130 N-acetylmannosamine-6 63.9 70 0.0015 34.7 11.6 56 1031-1092 139-201 (221)
192 PRK10558 alpha-dehydro-beta-de 60.1 93 0.002 34.8 11.9 73 1031-1107 40-113 (256)
193 COG0326 HtpG Molecular chapero 59.2 15 0.00033 45.4 5.8 48 627-674 75-133 (623)
194 PF06295 DUF1043: Protein of u 59.0 82 0.0018 31.3 10.0 20 469-488 62-81 (128)
195 PF05690 ThiG: Thiazole biosyn 58.9 87 0.0019 34.4 10.7 97 978-1105 113-221 (247)
196 TIGR00007 phosphoribosylformim 58.6 92 0.002 33.9 11.5 56 1031-1092 158-217 (230)
197 TIGR02370 pyl_corrinoid methyl 58.6 43 0.00092 35.8 8.6 98 966-1092 86-192 (197)
198 COG3105 Uncharacterized protei 58.2 96 0.0021 30.7 9.7 18 471-488 73-90 (138)
199 TIGR01334 modD putative molybd 56.1 40 0.00087 38.1 8.1 71 990-1091 191-261 (277)
200 TIGR03239 GarL 2-dehydro-3-deo 56.0 1.3E+02 0.0029 33.4 12.2 73 1031-1107 33-106 (249)
201 PRK14939 gyrB DNA gyrase subun 54.5 10 0.00022 48.6 3.4 80 553-675 36-130 (756)
202 cd04729 NanE N-acetylmannosami 54.4 1.5E+02 0.0033 32.0 12.2 42 1045-1092 164-205 (219)
203 PRK05458 guanosine 5'-monophos 54.4 1.8E+02 0.0039 33.7 13.2 98 966-1093 113-230 (326)
204 PRK10128 2-keto-3-deoxy-L-rham 54.1 1.5E+02 0.0032 33.5 12.2 74 1031-1109 39-113 (267)
205 PRK07896 nicotinate-nucleotide 51.0 61 0.0013 36.9 8.5 72 990-1092 202-273 (289)
206 cd00331 IGPS Indole-3-glycerol 50.5 2.3E+02 0.005 30.5 12.9 43 1046-1092 158-200 (217)
207 cd00452 KDPG_aldolase KDPG and 50.4 1E+02 0.0022 32.6 9.8 76 986-1093 95-171 (190)
208 CHL00162 thiG thiamin biosynth 49.8 1.7E+02 0.0037 32.6 11.2 98 980-1108 129-238 (267)
209 COG2204 AtoC Response regulato 49.7 1.5E+02 0.0033 36.0 11.9 117 717-871 6-122 (464)
210 PF03602 Cons_hypoth95: Conser 48.4 62 0.0013 34.2 7.7 68 965-1055 66-139 (183)
211 TIGR00736 nifR3_rel_arch TIM-b 47.8 85 0.0018 34.5 8.8 57 1031-1092 161-219 (231)
212 PRK13111 trpA tryptophan synth 47.6 52 0.0011 36.8 7.3 60 1045-1109 75-140 (258)
213 cd04727 pdxS PdxS is a subunit 47.5 68 0.0015 36.1 8.0 61 1045-1111 181-248 (283)
214 cd04726 KGPDC_HPS 3-Keto-L-gul 47.5 2.4E+02 0.0053 29.7 12.3 84 978-1092 93-185 (202)
215 TIGR00343 pyridoxal 5'-phospha 47.3 64 0.0014 36.4 7.8 60 1045-1110 184-250 (287)
216 KOG2353 L-type voltage-depende 47.1 18 0.00039 48.0 4.0 80 214-293 422-510 (1104)
217 KOG1979 DNA mismatch repair pr 46.7 27 0.00059 42.5 5.0 25 628-652 59-83 (694)
218 PF01408 GFO_IDH_MocA: Oxidore 46.3 2.1E+02 0.0046 27.1 10.6 45 1065-1109 65-111 (120)
219 PRK05703 flhF flagellar biosyn 46.2 1.8E+02 0.004 35.0 12.1 110 964-1097 251-369 (424)
220 TIGR02311 HpaI 2,4-dihydroxyhe 45.6 2.5E+02 0.0054 31.2 12.3 74 1031-1108 33-107 (249)
221 TIGR03151 enACPred_II putative 45.3 1.7E+02 0.0038 33.6 11.3 83 980-1092 101-189 (307)
222 PRK15347 two component system 44.7 1.6E+02 0.0034 39.0 12.5 120 716-869 691-810 (921)
223 COG3105 Uncharacterized protei 44.3 3.1E+02 0.0068 27.2 10.8 17 480-496 61-77 (138)
224 cd05212 NAD_bind_m-THF_DH_Cycl 44.1 71 0.0015 32.3 7.0 55 961-1043 25-83 (140)
225 PF10087 DUF2325: Uncharacteri 44.0 1.5E+02 0.0033 27.6 8.9 90 966-1083 1-93 (97)
226 PRK13125 trpA tryptophan synth 43.8 2.3E+02 0.0051 31.3 11.7 89 977-1094 118-215 (244)
227 PRK00748 1-(5-phosphoribosyl)- 43.7 94 0.002 33.8 8.6 56 1031-1092 159-219 (233)
228 PLN02591 tryptophan synthase 43.6 58 0.0013 36.3 6.8 59 1045-1109 65-129 (250)
229 PRK13587 1-(5-phosphoribosyl)- 43.4 1.1E+02 0.0023 33.8 8.9 55 1032-1092 163-220 (234)
230 PRK11677 hypothetical protein; 43.0 3.1E+02 0.0068 27.6 11.1 78 387-464 4-85 (134)
231 cd04723 HisA_HisF Phosphoribos 42.9 1.9E+02 0.004 31.8 10.7 54 1033-1092 161-217 (233)
232 PRK06096 molybdenum transport 42.8 87 0.0019 35.6 8.1 72 990-1092 192-263 (284)
233 PTZ00314 inosine-5'-monophosph 42.7 2.1E+02 0.0045 35.3 12.0 43 1047-1092 330-372 (495)
234 PF01596 Methyltransf_3: O-met 42.6 1E+02 0.0022 33.3 8.3 70 964-1054 70-142 (205)
235 PF10669 Phage_Gp23: Protein g 42.4 2.9E+02 0.0063 25.8 11.9 17 432-448 64-80 (121)
236 PF14827 Cache_3: Sensory doma 41.9 21 0.00045 34.6 2.7 32 226-260 83-114 (116)
237 cd00564 TMP_TenI Thiamine mono 41.7 1.7E+02 0.0037 30.3 10.0 55 1031-1092 115-177 (196)
238 PRK11840 bifunctional sulfur c 40.7 2.8E+02 0.006 32.1 11.6 54 1047-1106 238-296 (326)
239 COG0512 PabA Anthranilate/para 40.5 44 0.00096 35.4 5.0 94 965-1091 2-97 (191)
240 PRK05848 nicotinate-nucleotide 40.0 2.3E+02 0.0049 32.1 10.8 84 978-1092 170-256 (273)
241 TIGR01058 parE_Gpos DNA topois 39.9 23 0.00049 44.8 3.3 50 627-676 67-128 (637)
242 PRK05458 guanosine 5'-monophos 39.8 81 0.0018 36.6 7.4 54 1032-1091 112-166 (326)
243 PRK07428 nicotinate-nucleotide 39.7 1.1E+02 0.0023 34.9 8.3 71 991-1092 200-270 (288)
244 TIGR00262 trpA tryptophan synt 39.5 90 0.002 34.9 7.6 59 1045-1108 73-137 (256)
245 TIGR01302 IMP_dehydrog inosine 39.3 2.7E+02 0.0059 33.8 12.3 99 964-1092 236-355 (450)
246 PF02254 TrkA_N: TrkA-N domain 39.2 2.4E+02 0.0052 26.6 9.7 94 964-1092 21-115 (116)
247 cd04730 NPD_like 2-Nitropropan 38.2 3.8E+02 0.0082 29.0 12.3 57 1031-1093 122-185 (236)
248 PRK05567 inosine 5'-monophosph 37.7 3.5E+02 0.0077 33.2 13.0 43 1047-1092 317-359 (486)
249 cd02068 radical_SAM_B12_BD B12 36.8 3.2E+02 0.0069 26.6 10.3 105 975-1108 3-111 (127)
250 TIGR00693 thiE thiamine-phosph 36.6 2E+02 0.0044 30.2 9.5 56 1031-1092 116-179 (196)
251 PRK11889 flhF flagellar biosyn 36.2 4.2E+02 0.009 31.9 12.5 112 964-1097 269-389 (436)
252 PRK12724 flagellar biosynthesi 36.2 3.4E+02 0.0074 32.7 12.0 108 964-1096 252-370 (432)
253 PRK00811 spermidine synthase; 36.1 1.5E+02 0.0034 33.5 9.0 70 965-1058 101-182 (283)
254 cd02065 B12-binding_like B12 b 36.0 1.9E+02 0.0041 27.7 8.6 79 971-1076 10-92 (125)
255 PRK06543 nicotinate-nucleotide 35.2 2.9E+02 0.0063 31.4 10.7 67 991-1091 197-263 (281)
256 TIGR02956 TMAO_torS TMAO reduc 34.9 2.5E+02 0.0054 37.4 12.1 121 715-870 702-822 (968)
257 TIGR01163 rpe ribulose-phospha 34.7 3E+02 0.0064 29.2 10.5 61 1031-1093 126-193 (210)
258 PRK11359 cyclic-di-GMP phospho 34.5 1.7E+02 0.0037 37.9 10.3 102 979-1107 682-794 (799)
259 PRK09966 putative inner membra 34.4 6.1E+02 0.013 29.8 14.2 32 261-292 74-106 (407)
260 cd04724 Tryptophan_synthase_al 34.3 1.3E+02 0.0029 33.1 7.9 58 1045-1108 63-126 (242)
261 PRK10841 hybrid sensory kinase 34.3 3.4E+02 0.0073 36.3 12.9 117 715-869 801-917 (924)
262 PF07652 Flavi_DEAD: Flaviviru 34.1 1.1E+02 0.0023 31.3 6.4 27 963-989 32-58 (148)
263 TIGR00735 hisF imidazoleglycer 33.9 3.4E+02 0.0075 30.1 11.2 52 1047-1104 188-246 (254)
264 PRK12723 flagellar biosynthesi 33.5 4.7E+02 0.01 31.2 12.6 109 964-1096 206-323 (388)
265 PF06795 Erythrovirus_X: Eryth 33.4 23 0.0005 30.2 1.2 28 6-33 49-80 (81)
266 PLN02274 inosine-5'-monophosph 33.2 3E+02 0.0066 34.0 11.4 99 964-1092 260-379 (505)
267 PRK07695 transcriptional regul 32.6 3.4E+02 0.0073 28.9 10.5 72 1031-1109 115-198 (201)
268 TIGR01037 pyrD_sub1_fam dihydr 32.5 84 0.0018 35.8 6.2 59 1047-1111 223-287 (300)
269 cd04732 HisA HisA. Phosphorib 32.0 4.3E+02 0.0094 28.5 11.5 54 1033-1092 162-218 (234)
270 PLN03237 DNA topoisomerase 2; 31.9 68 0.0015 44.0 5.8 54 627-680 112-177 (1465)
271 PF02581 TMP-TENI: Thiamine mo 31.7 2.7E+02 0.0058 29.1 9.4 81 980-1091 88-175 (180)
272 PF01729 QRPTase_C: Quinolinat 31.4 1.6E+02 0.0034 30.8 7.4 71 991-1092 84-154 (169)
273 PF08348 PAS_6: YheO-like PAS 31.2 46 0.001 32.6 3.2 73 186-267 39-114 (118)
274 PRK11466 hybrid sensory histid 30.8 3.4E+02 0.0074 35.9 12.3 120 714-870 680-799 (914)
275 COG2022 ThiG Uncharacterized e 30.6 4.2E+02 0.0091 29.2 10.3 86 978-1093 120-211 (262)
276 TIGR00566 trpG_papA glutamine 30.6 1.2E+02 0.0025 32.1 6.4 32 967-998 2-33 (188)
277 COG4122 Predicted O-methyltran 30.6 1.3E+02 0.0029 32.7 6.9 57 966-1043 86-144 (219)
278 PF09936 Methyltrn_RNA_4: SAM- 30.4 3.2E+02 0.0069 28.9 9.2 102 966-1096 44-161 (185)
279 PRK08385 nicotinate-nucleotide 30.3 2.4E+02 0.0053 32.0 9.1 97 966-1092 156-258 (278)
280 PRK07107 inosine 5-monophospha 30.2 2.2E+02 0.0049 35.1 9.5 29 1064-1092 352-380 (502)
281 PRK06774 para-aminobenzoate sy 29.8 80 0.0017 33.4 5.0 38 967-1004 2-39 (191)
282 PRK08883 ribulose-phosphate 3- 29.5 2.3E+02 0.005 30.9 8.6 106 980-1108 98-215 (220)
283 PRK06731 flhF flagellar biosyn 29.1 5.2E+02 0.011 29.2 11.5 111 964-1096 103-222 (270)
284 PRK12726 flagellar biosynthesi 29.1 5.7E+02 0.012 30.6 12.0 112 964-1097 234-354 (407)
285 cd00429 RPE Ribulose-5-phospha 28.8 4.3E+02 0.0093 27.9 10.6 59 1032-1092 128-193 (211)
286 PRK14974 cell division protein 28.8 5.3E+02 0.012 30.1 11.8 112 964-1097 168-291 (336)
287 cd02809 alpha_hydroxyacid_oxid 28.6 4.9E+02 0.011 29.6 11.5 58 1031-1092 193-255 (299)
288 cd00381 IMPDH IMPDH: The catal 28.5 5.3E+02 0.011 29.9 11.8 43 1047-1092 183-225 (325)
289 PRK05742 nicotinate-nucleotide 28.4 2.6E+02 0.0056 31.7 8.9 67 992-1092 194-260 (277)
290 PRK05749 3-deoxy-D-manno-octul 28.3 4.1E+02 0.0089 31.6 11.4 111 964-1110 262-388 (425)
291 PRK05581 ribulose-phosphate 3- 28.3 5.4E+02 0.012 27.5 11.3 73 1031-1106 131-216 (220)
292 TIGR03088 stp2 sugar transfera 28.1 3.7E+02 0.008 31.0 10.8 108 964-1110 229-338 (374)
293 PRK09016 quinolinate phosphori 28.0 2.2E+02 0.0047 32.6 8.2 69 990-1092 211-279 (296)
294 PRK04180 pyridoxal biosynthesi 28.0 90 0.002 35.3 5.1 60 1045-1110 190-256 (293)
295 PRK12704 phosphodiesterase; Pr 27.7 50 0.0011 40.8 3.4 44 1066-1109 251-296 (520)
296 KOG1977 DNA mismatch repair pr 27.6 1E+02 0.0022 38.7 5.7 28 625-652 49-76 (1142)
297 COG0134 TrpC Indole-3-glycerol 27.5 5.6E+02 0.012 28.6 11.1 81 980-1092 148-235 (254)
298 PRK10669 putative cation:proto 27.4 5.1E+02 0.011 32.3 12.3 71 1030-1111 480-550 (558)
299 TIGR00734 hisAF_rel hisA/hisF 27.4 1.7E+02 0.0036 32.0 7.0 55 1032-1092 155-212 (221)
300 PRK07259 dihydroorotate dehydr 27.3 5E+02 0.011 29.5 11.4 60 1046-1111 222-287 (301)
301 PRK01130 N-acetylmannosamine-6 27.2 1.8E+02 0.0038 31.5 7.3 55 1046-1106 44-116 (221)
302 TIGR01304 IMP_DH_rel_2 IMP deh 27.0 2.7E+02 0.0058 33.0 9.0 29 1064-1092 255-283 (369)
303 PRK06978 nicotinate-nucleotide 27.0 2.1E+02 0.0045 32.7 7.8 68 991-1092 209-276 (294)
304 cd01573 modD_like ModD; Quinol 27.0 2.2E+02 0.0049 32.1 8.2 71 991-1092 187-257 (272)
305 PRK06106 nicotinate-nucleotide 26.7 2.2E+02 0.0048 32.3 8.0 68 991-1092 198-265 (281)
306 CHL00200 trpA tryptophan synth 26.6 1.8E+02 0.0038 32.7 7.2 57 1045-1107 78-140 (263)
307 PRK04457 spermidine synthase; 26.5 4.6E+02 0.01 29.3 10.6 71 964-1058 90-168 (262)
308 KOG1978 DNA mismatch repair pr 26.3 67 0.0014 40.2 4.0 24 627-650 51-74 (672)
309 cd01572 QPRTase Quinolinate ph 26.2 1.5E+02 0.0032 33.5 6.5 64 1048-1117 170-233 (268)
310 PLN02823 spermine synthase 26.0 2.3E+02 0.0049 33.1 8.2 55 965-1043 128-188 (336)
311 PRK15041 methyl-accepting chem 25.7 1.4E+03 0.03 28.5 15.8 22 22-43 22-43 (554)
312 TIGR00417 speE spermidine synt 25.7 3.6E+02 0.0079 30.2 9.6 70 965-1058 97-177 (270)
313 smart00052 EAL Putative diguan 25.4 2.6E+02 0.0057 29.9 8.3 93 979-1098 137-240 (241)
314 PRK13566 anthranilate synthase 25.3 1.9E+02 0.0042 37.3 8.0 38 961-998 523-560 (720)
315 PRK15484 lipopolysaccharide 1, 25.3 1.1E+03 0.023 27.6 14.0 110 964-1110 224-344 (380)
316 PTZ00170 D-ribulose-5-phosphat 25.1 2.2E+02 0.0048 31.2 7.5 108 979-1109 105-222 (228)
317 COG0157 NadC Nicotinate-nucleo 24.8 6.9E+02 0.015 28.3 11.1 75 985-1091 183-260 (280)
318 PF04131 NanE: Putative N-acet 24.8 3.2E+02 0.007 29.1 8.1 68 994-1092 99-172 (192)
319 PRK04302 triosephosphate isome 24.8 7.5E+02 0.016 26.8 11.6 57 1047-1108 161-219 (223)
320 PRK08649 inosine 5-monophospha 24.6 6.5E+02 0.014 29.8 11.6 54 1031-1092 154-214 (368)
321 TIGR00078 nadC nicotinate-nucl 24.5 2.4E+02 0.0053 31.7 7.8 68 991-1092 182-249 (265)
322 COG4566 TtrR Response regulato 24.5 6.7E+02 0.015 26.9 10.3 116 717-870 6-121 (202)
323 PRK02083 imidazole glycerol ph 24.3 6.3E+02 0.014 27.9 11.1 69 1031-1105 166-245 (253)
324 TIGR03128 RuMP_HxlA 3-hexulose 24.3 8.6E+02 0.019 25.7 14.4 95 978-1105 92-203 (206)
325 PLN02871 UDP-sulfoquinovose:DA 24.2 6.1E+02 0.013 30.7 11.9 106 964-1110 290-400 (465)
326 COG0313 Predicted methyltransf 23.9 2.5E+02 0.0053 31.7 7.5 83 962-1074 28-116 (275)
327 PRK09140 2-dehydro-3-deoxy-6-p 23.9 6.4E+02 0.014 27.2 10.7 96 982-1105 5-101 (206)
328 cd01568 QPRTase_NadC Quinolina 23.8 3.5E+02 0.0077 30.4 9.0 70 991-1092 185-254 (269)
329 PRK06843 inosine 5-monophospha 23.8 1.1E+03 0.023 28.4 13.2 101 964-1092 165-284 (404)
330 cd04722 TIM_phosphate_binding 23.6 4.7E+02 0.01 26.6 9.6 56 1031-1092 136-198 (200)
331 cd04741 DHOD_1A_like Dihydroor 23.4 1.3E+02 0.0028 34.3 5.5 40 1048-1091 231-270 (294)
332 PF10090 DUF2328: Uncharacteri 23.4 9E+02 0.019 25.6 19.8 170 454-686 2-174 (182)
333 PHA02569 39 DNA topoisomerase 23.2 40 0.00087 42.4 1.4 52 627-678 80-145 (602)
334 COG3290 CitA Signal transducti 23.0 1E+02 0.0022 37.9 4.6 36 229-267 135-170 (537)
335 PRK03958 tRNA 2'-O-methylase; 23.0 9.1E+02 0.02 25.5 13.3 88 965-1081 32-121 (176)
336 PRK05718 keto-hydroxyglutarate 22.9 9.9E+02 0.022 25.9 12.9 92 982-1102 10-102 (212)
337 PRK07649 para-aminobenzoate/an 22.9 99 0.0022 33.0 4.2 38 967-1004 2-39 (195)
338 PLN02617 imidazole glycerol ph 22.8 6.3E+02 0.014 31.6 11.5 69 1032-1106 453-531 (538)
339 cd04731 HisF The cyclase subun 22.6 3.8E+02 0.0082 29.4 8.9 56 1031-1092 40-99 (243)
340 cd02810 DHOD_DHPD_FMN Dihydroo 22.4 3.2E+02 0.007 30.8 8.5 41 1047-1091 230-270 (289)
341 PRK05637 anthranilate synthase 22.3 2.4E+02 0.0053 30.4 7.1 33 966-998 3-35 (208)
342 PF00977 His_biosynth: Histidi 22.2 4.1E+02 0.0089 29.0 9.0 55 1032-1092 162-219 (229)
343 TIGR01302 IMP_dehydrog inosine 22.1 2.5E+02 0.0054 34.2 7.9 55 1031-1091 236-291 (450)
344 cd01571 NAPRTase_B Nicotinate 22.1 7.2E+02 0.016 28.5 11.2 58 1031-1090 211-270 (302)
345 PRK08745 ribulose-phosphate 3- 21.9 5.7E+02 0.012 28.0 9.8 105 980-1107 102-218 (223)
346 PRK12727 flagellar biosynthesi 21.9 6.1E+02 0.013 31.6 10.9 104 964-1096 380-495 (559)
347 cd00331 IGPS Indole-3-glycerol 21.8 3.3E+02 0.0072 29.2 8.1 66 1035-1106 49-116 (217)
348 PF03328 HpcH_HpaI: HpcH/HpaI 21.8 7.3E+02 0.016 26.7 10.8 76 1030-1110 20-108 (221)
349 cd03823 GT1_ExpE7_like This fa 21.6 9.9E+02 0.021 26.4 12.5 108 964-1110 220-329 (359)
350 PF00218 IGPS: Indole-3-glycer 21.5 5.8E+02 0.013 28.6 9.9 87 978-1093 148-238 (254)
351 PRK06895 putative anthranilate 21.5 2.5E+02 0.0054 29.7 6.9 32 965-996 2-33 (190)
352 cd03820 GT1_amsD_like This fam 21.5 8.6E+02 0.019 26.6 11.8 109 964-1110 209-319 (348)
353 PLN02366 spermidine synthase 21.3 5.6E+02 0.012 29.5 10.1 71 965-1058 116-197 (308)
354 KOG1478 3-keto sterol reductas 21.3 80 0.0017 35.0 3.0 30 662-701 12-41 (341)
355 PRK11091 aerobic respiration c 21.2 7.4E+02 0.016 32.1 12.6 121 714-870 524-644 (779)
356 TIGR00064 ftsY signal recognit 21.1 6.9E+02 0.015 28.1 10.7 111 964-1096 100-228 (272)
357 PRK06559 nicotinate-nucleotide 20.9 3.1E+02 0.0067 31.3 7.7 67 991-1091 201-267 (290)
358 cd01948 EAL EAL domain. This d 20.9 2.7E+02 0.0059 29.7 7.3 93 979-1098 136-239 (240)
359 cd01748 GATase1_IGP_Synthase T 20.7 3E+02 0.0065 29.2 7.4 32 967-998 1-32 (198)
360 cd04962 GT1_like_5 This family 20.7 6.3E+02 0.014 28.7 10.8 106 965-1109 228-335 (371)
361 PRK14098 glycogen synthase; Pr 20.7 7.6E+02 0.017 30.3 11.8 111 964-1108 336-449 (489)
362 PF01081 Aldolase: KDPG and KH 20.6 4.1E+02 0.0089 28.5 8.2 94 982-1103 3-97 (196)
363 PRK13143 hisH imidazole glycer 20.5 2.6E+02 0.0055 29.9 6.8 33 965-997 1-33 (200)
364 PF04131 NanE: Putative N-acet 20.5 2.7E+02 0.0058 29.7 6.6 70 988-1091 45-117 (192)
365 PF01564 Spermine_synth: Sperm 20.4 2.2E+02 0.0048 31.6 6.4 70 965-1058 101-182 (246)
366 PTZ00108 DNA topoisomerase 2-l 20.2 89 0.0019 42.9 3.8 51 627-677 95-157 (1388)
367 TIGR00078 nadC nicotinate-nucl 20.1 2.5E+02 0.0053 31.7 6.7 64 1048-1117 166-229 (265)
368 PF07568 HisKA_2: Histidine ki 20.0 6.3E+02 0.014 22.5 9.3 72 445-526 2-73 (76)
No 1
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=5.9e-59 Score=596.51 Aligned_cols=484 Identities=26% Similarity=0.411 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001222 428 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 507 (1120)
Q Consensus 428 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l 507 (1120)
+++++++++.|++|+++|||||||||++|.|++++|.. ...++++.+++..|..++.+|..+|+++||++|++++.+.+
T Consensus 437 ~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~-~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l 515 (924)
T PRK10841 437 AQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQT-KELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI 515 (924)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 34456778889999999999999999999999999864 45678888899999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCC
Q 001222 508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 587 (1120)
Q Consensus 508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 587 (1120)
+.++|++.+++++++..+...+..|++.+.+.++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.+.+...
T Consensus 516 ~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~----- 590 (924)
T PRK10841 516 EPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD----- 590 (924)
T ss_pred eeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe-----
Confidence 999999999999999999999999999999988888887899999999999999999999999999988765321
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
...+.|+|.|||+||+++.+++||+|||+.+....+..+|+||||
T Consensus 591 -----------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL 635 (924)
T PRK10841 591 -----------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 635 (924)
T ss_pred -----------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhH
Confidence 124789999999999999999999999998876666778999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001222 668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 747 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 747 (1120)
+||++|+++|||+|+++|.+|+||+|+|.||+...............+..+.+..........+..|+..+|..+.....
T Consensus 636 ~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~ 715 (924)
T PRK10841 636 AICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEG 715 (924)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEccc
Confidence 99999999999999999999999999999998654332222333445666777777777778888899988876543321
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhcccee
Q 001222 748 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 827 (1120)
Q Consensus 748 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 827 (1120)
... .+..+++.|.... .... .... .
T Consensus 716 ~~~-----------------------------------------~~~d~~i~d~~~~-~~~~-----~~~~--------~ 740 (924)
T PRK10841 716 QEP-----------------------------------------TPEDVLITDDPVQ-KKWQ-----GRAV--------I 740 (924)
T ss_pred ccC-----------------------------------------CcCcEEEEcCccc-cccc-----hhhh--------h
Confidence 000 0011122121000 0000 0000 0
Q ss_pred EeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhc
Q 001222 828 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 907 (1120)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1120)
.+...+... . ...........|.....+...+.........
T Consensus 741 ~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------------------------------- 781 (924)
T PRK10841 741 TFCRRHIGI---P---LEIAPGEWVHSTATPHELPALLARIYRIELE--------------------------------- 781 (924)
T ss_pred hhhhccccC---h---hhcccCceeeccCChHHHHHHHHHHhhcccc---------------------------------
Confidence 000000000 0 0000011122222222222222221110000
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhc
Q 001222 908 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 987 (1120)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~ 987 (1120)
........+ ..........+++||||||++.++..+..+|++.
T Consensus 782 --------------------------------~~~~~~~~~-----~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~ 824 (924)
T PRK10841 782 --------------------------------SDDSANALP-----STDKAVSDNDDMMILVVDDHPINRRLLADQLGSL 824 (924)
T ss_pred --------------------------------ccccccccc-----ccccccccCCCCEEEEECCCHHHHHHHHHHHHHc
Confidence 000000000 0000011124679999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222 988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus 988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
||.|..+.||.+|++.+.. ..||+||||++||+|||++++++||+.. ..+||
T Consensus 825 G~~v~~a~~g~eal~~l~~-----------------------~~~DlVl~D~~mP~mdG~el~~~ir~~~-----~~~pI 876 (924)
T PRK10841 825 GYQCKTANDGVDALNVLSK-----------------------NHIDIVLTDVNMPNMDGYRLTQRLRQLG-----LTLPV 876 (924)
T ss_pred CCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----CCCCE
Confidence 9999999999999999864 3799999999999999999999999853 35899
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1068 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1068 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|++|++...++..+|+++|||+||.||++.++|...|.++..+.
T Consensus 877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=7.2e-58 Score=593.90 Aligned_cols=502 Identities=31% Similarity=0.463 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001222 429 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 508 (1120)
Q Consensus 429 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~ 508 (1120)
++++++++.|++|+++|||||||||++|+|+++++.. ...++++++++..|.+++.+|..+|+++++++|++++++.++
T Consensus 284 ~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~-~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 284 KRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLK-TPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4556677789999999999999999999999998864 446788889999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCC
Q 001222 509 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 588 (1120)
Q Consensus 509 ~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~ 588 (1120)
..+|++.+++++++..+...+..|++.+.++++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.+.+....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~----- 437 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRA----- 437 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEe-----
Confidence 999999999999999999999999999999998888878999999999999999999999999998877654321
Q ss_pred CCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHH
Q 001222 589 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 668 (1120)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLa 668 (1120)
..++...++|+|.|+|+|||++.+++||+|||+++.+.+++.+|+||||+
T Consensus 438 ------------------------------~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~ 487 (919)
T PRK11107 438 ------------------------------LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLV 487 (919)
T ss_pred ------------------------------cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHH
Confidence 11233468899999999999999999999999999888888899999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCcccc--ccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecc
Q 001222 669 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ--IYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 746 (1120)
Q Consensus 669 Ivk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 746 (1120)
|||++++.|||+|+++|.+|+||+|+|.||+........ .....+.+..+++...+...+..+..++...|..+...+
T Consensus 488 i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~ 567 (919)
T PRK11107 488 ITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSP 567 (919)
T ss_pred HHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999999999999999999875432211 112235577888888888899999999999988776554
Q ss_pred chhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchH-HHHHhhhhhhhhccc
Q 001222 747 EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDL-WREQLNSLDIFHRKA 825 (1120)
Q Consensus 747 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~-~~e~~~~~~~~~~~~ 825 (1120)
....+ ...+.+++++|..+.+..... ..+..+. .....
T Consensus 568 ~~~~l--------------------------------------~~~~~d~il~~~~~~~~~~~~~~~~~~~~---~~~~~ 606 (919)
T PRK11107 568 TLSQL--------------------------------------PEAHYDILLLGLPVTFREPLTMLHERLAK---AKSMT 606 (919)
T ss_pred CHHHh--------------------------------------ccCCCCEEEecccCCCCCCHHHHHHHHHh---hhhcC
Confidence 32220 012344566666665544322 1122211 11111
Q ss_pred eeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhh
Q 001222 826 MFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQ 905 (1120)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1120)
....+..............+.|...++.||+....+...+.........
T Consensus 607 ~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~------------------------------- 655 (919)
T PRK11107 607 DFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQP------------------------------- 655 (919)
T ss_pred CcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhccccc-------------------------------
Confidence 2222222222333444566678888899999998887766443210000
Q ss_pred hccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHH
Q 001222 906 KFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 985 (1120)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~ 985 (1120)
+ . .........+++||||||++.++..++.+|+
T Consensus 656 -------------~--~--------------------------------~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~ 688 (919)
T PRK11107 656 -------------P--L--------------------------------LPPTDESRLPLTVMAVDDNPANLKLIGALLE 688 (919)
T ss_pred -------------c--c--------------------------------ccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 0 0 0000011235799999999999999999999
Q ss_pred hcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCc
Q 001222 986 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1065 (1120)
Q Consensus 986 ~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~i 1065 (1120)
..|+.|..+.+|.+|++.+.. ..||+||||+.||+|||+++++.||+... ..++
T Consensus 689 ~~~~~v~~~~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~g~~~~~~lr~~~~---~~~~ 742 (919)
T PRK11107 689 EQVEHVVLCDSGHQAVEQAKQ-----------------------RPFDLILMDIQMPGMDGIRACELIRQLPH---NQNT 742 (919)
T ss_pred HcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCCcHHHHHHHHHhccc---CCCC
Confidence 999999999999999998864 47999999999999999999999998643 2469
Q ss_pred ceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1066 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1066 pIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|||++|++...+...+|+++||++||.||++.++|...|.+++...
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999987654
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=2e-56 Score=580.65 Aligned_cols=424 Identities=31% Similarity=0.486 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001222 428 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 507 (1120)
Q Consensus 428 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l 507 (1120)
+++++.+++.|++|++++||||||||++|+|++++|.. ...++++++++..|..++.+|..+++++|+++|+|++++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~-~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 466 (921)
T PRK15347 388 KQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQN-TPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQMTL 466 (921)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34556677789999999999999999999999999864 45778889999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCC
Q 001222 508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 587 (1120)
Q Consensus 508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 587 (1120)
+.+++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+|||.|||+||+|||++|.|.|++...
T Consensus 467 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~----- 541 (921)
T PRK15347 467 SLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH----- 541 (921)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc-----
Confidence 999999999999999999999999999999988888888899999999999999999999999999988875321
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
...++|+|.|||+||+++.+++||+||+|.+. ..+|+||||
T Consensus 542 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 582 (921)
T PRK15347 542 -----------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGL 582 (921)
T ss_pred -----------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHH
Confidence 12478999999999999999999999998764 246999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001222 668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 747 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 747 (1120)
+||++++++|||+|+++|++|+||+|+|.||+........ ..+.. .....+..++..++........
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 649 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----LKGEL--------SAPLALHRQLSAWGITCQPGHQ 649 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----ccccc--------cchHHHHHHHHHcCCccccccc
Confidence 9999999999999999999999999999999864211100 00000 0000111111111111000000
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhcccee
Q 001222 748 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 827 (1120)
Q Consensus 748 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 827 (1120)
. ...
T Consensus 650 ~-----------------------------~~~----------------------------------------------- 653 (921)
T PRK15347 650 N-----------------------------PAL----------------------------------------------- 653 (921)
T ss_pred c-----------------------------hhh-----------------------------------------------
Confidence 0 000
Q ss_pred EeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhc
Q 001222 828 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 907 (1120)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1120)
...+ .+..+..+...+.......
T Consensus 654 -----------~~~~-----------~~~~~~~~~~~~~~~~~~~----------------------------------- 676 (921)
T PRK15347 654 -----------LDPE-----------LAYLPGRLYDLLQQIIQGA----------------------------------- 676 (921)
T ss_pred -----------cchh-----------hhhcchHHHHHHHHHhhcC-----------------------------------
Confidence 0000 0000011111111100000
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhc
Q 001222 908 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 987 (1120)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~ 987 (1120)
+.. .+. .......+++||||||++.++..+..+|+..
T Consensus 677 -----------~~~-------------------------~~~-------~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~ 713 (921)
T PRK15347 677 -----------PNE-------------------------PVI-------NLPLQPWQLQILLVDDVETNRDIIGMMLVEL 713 (921)
T ss_pred -----------CCc-------------------------ccc-------cCCCCcccCCEEEEeCCHHHHHHHHHHHHHc
Confidence 000 000 0000123568999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222 988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus 988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
|++|..|.+|.+|++.+.. ..||+||||++||+|||++++++||+.... ..+++||
T Consensus 714 g~~v~~a~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~G~~~~~~ir~~~~~-~~~~~pi 769 (921)
T PRK15347 714 GQQVTTAASGTEALELGRQ-----------------------HRFDLVLMDIRMPGLDGLETTQLWRDDPNN-LDPDCMI 769 (921)
T ss_pred CCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhchhh-cCCCCcE
Confidence 9999999999999998853 479999999999999999999999975422 1256999
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1068 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1068 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|++|++.+.+...+|+++||++||.||++.++|..++.++..
T Consensus 770 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 770 VALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987754
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=3.3e-53 Score=553.28 Aligned_cols=370 Identities=34% Similarity=0.567 Sum_probs=322.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001222 428 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 507 (1120)
Q Consensus 428 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l 507 (1120)
+.+++++++.|++|+++|||||||||++|.|++++|.. ..+++++++++..|.+++.+|..+++++|+++|+|.+...+
T Consensus 454 ~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~ 532 (968)
T TIGR02956 454 RAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGD-TGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSI 532 (968)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 34456677889999999999999999999999999864 45678888999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCC
Q 001222 508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 587 (1120)
Q Consensus 508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 587 (1120)
+.++|++.+++++++..+...+..|++.+.++++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.|.+....
T Consensus 533 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~---- 608 (968)
T TIGR02956 533 SPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLND---- 608 (968)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcC----
Confidence 9999999999999999999999999999999998788888999999999999999999999999999888764321
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
+ ..++|+|.|+|+|||++.+++||+||++.+ ..+..+|+||||
T Consensus 609 ----------------------------------~-~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL 651 (968)
T TIGR02956 609 ----------------------------------D-SSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGL 651 (968)
T ss_pred ----------------------------------C-CeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHH
Confidence 1 117899999999999999999999999988 345568999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001222 668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 747 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 747 (1120)
+|||++++.|||+|+++|.+|+||+|+|.||+.........
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~--------------------------------------- 692 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDS--------------------------------------- 692 (968)
T ss_pred HHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccc---------------------------------------
Confidence 99999999999999999999999999999997531100000
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhcccee
Q 001222 748 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 827 (1120)
Q Consensus 748 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 827 (1120)
T Consensus 693 -------------------------------------------------------------------------------- 692 (968)
T TIGR02956 693 -------------------------------------------------------------------------------- 692 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhc
Q 001222 828 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 907 (1120)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1120)
. . .
T Consensus 693 ------------------~----------------------~-------~------------------------------ 695 (968)
T TIGR02956 693 ------------------A----------------------T-------L------------------------------ 695 (968)
T ss_pred ------------------c----------------------c-------c------------------------------
Confidence 0 0 0
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhc
Q 001222 908 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 987 (1120)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~ 987 (1120)
......+.+||||||++.++..+..+|+..
T Consensus 696 --------------------------------------------------~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~ 725 (968)
T TIGR02956 696 --------------------------------------------------TVIDLPPQRVLLVEDNEVNQMVAQGFLTRL 725 (968)
T ss_pred --------------------------------------------------ccccccccceEEEcCcHHHHHHHHHHHHHc
Confidence 000011348999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222 988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus 988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
||+|..+.||.+|++.+.. .+||+||||++||+|||+++++.||+..... .++||
T Consensus 726 g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~--~~~pi 780 (968)
T TIGR02956 726 GHKVTLAESGQSALECFHQ-----------------------HAFDLALLDINLPDGDGVTLLQQLRAIYGAK--NEVKF 780 (968)
T ss_pred CCEEEEECCHHHHHHHHHC-----------------------CCCCEEEECCCCCCCCHHHHHHHHHhCcccc--CCCeE
Confidence 9999999999999999863 4799999999999999999999999864321 12899
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1068 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1068 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|++|++...+...+|+++||++||.||++.++|...|.+++..
T Consensus 781 i~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 781 IAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998753
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.6e-52 Score=534.30 Aligned_cols=370 Identities=33% Similarity=0.526 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001222 430 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 509 (1120)
Q Consensus 430 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~ 509 (1120)
+.+++++.|++|+++|||||||||++|.|++++|.. ...++++++++..|..++.+|..+++++++++|++++++.+..
T Consensus 275 ~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 353 (779)
T PRK11091 275 ALEKASRDKTTFISTISHELRTPLNGIVGLSRILLD-TELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDN 353 (779)
T ss_pred HHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEe
Confidence 344556678999999999999999999999998864 4567888899999999999999999999999999999999999
Q ss_pred eeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCC
Q 001222 510 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 510 ~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~ 589 (1120)
.++++.++++++...+...+..+++.+.++++++.|..+.+|+.+|+|||.||++||+||++.|.|.+.+....
T Consensus 354 ~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~------ 427 (779)
T PRK11091 354 QPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE------ 427 (779)
T ss_pred eccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc------
Confidence 99999999999999999999999999999988888878999999999999999999999999999888764320
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccC-CCCCCCCCCCccchHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG-DPSTTRKHGGTGLGLS 668 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~-~~s~~~~~~GtGLGLa 668 (1120)
...+.|+|.|+|+|||++.+++||+|||+. +.+.++..+|+||||+
T Consensus 428 ---------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~ 474 (779)
T PRK11091 428 ---------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLA 474 (779)
T ss_pred ---------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHH
Confidence 123789999999999999999999999998 5555556789999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccch
Q 001222 669 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEW 748 (1120)
Q Consensus 669 Ivk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 748 (1120)
|||+||+.|||+|+++|.+|+||+|+|+||+........
T Consensus 475 i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~----------------------------------------- 513 (779)
T PRK11091 475 VSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVE----------------------------------------- 513 (779)
T ss_pred HHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccc-----------------------------------------
Confidence 999999999999999999999999999999743210000
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhccceeE
Q 001222 749 HGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFA 828 (1120)
Q Consensus 749 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~ 828 (1120)
T Consensus 514 -------------------------------------------------------------------------------- 513 (779)
T PRK11091 514 -------------------------------------------------------------------------------- 513 (779)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhcc
Q 001222 829 WVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFR 908 (1120)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1120)
. . + .
T Consensus 514 ------~--~----------------~---------------------~------------------------------- 517 (779)
T PRK11091 514 ------D--A----------------F---------------------D------------------------------- 517 (779)
T ss_pred ------c--c----------------c---------------------c-------------------------------
Confidence 0 0 0 0
Q ss_pred ccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhcC
Q 001222 909 KCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 988 (1120)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~g 988 (1120)
.......+++||||||++.++..+..+|+..|
T Consensus 518 ------------------------------------------------~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g 549 (779)
T PRK11091 518 ------------------------------------------------EDDMPLPALNILLVEDIELNVIVARSVLEKLG 549 (779)
T ss_pred ------------------------------------------------cccccccccceEEEcCCHHHHHHHHHHHHHcC
Confidence 00000124689999999999999999999999
Q ss_pred CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCC-cce
Q 001222 989 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IPI 1067 (1120)
Q Consensus 989 ~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~-ipI 1067 (1120)
+.|..+.+|.+|++.+.. ..||+||||+.||+|||++++++||+..+. .. +||
T Consensus 550 ~~v~~a~~~~eal~~~~~-----------------------~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~---~~~~~i 603 (779)
T PRK11091 550 NSVDVAMTGKEALEMFDP-----------------------DEYDLVLLDIQLPDMTGLDIARELRERYPR---EDLPPL 603 (779)
T ss_pred CEEEEECCHHHHHHHhhc-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcccc---CCCCcE
Confidence 999999999999998853 479999999999999999999999976421 24 499
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1068 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1068 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|++|++... +..+|+++||++||.||++.++|..+|.+++...
T Consensus 604 i~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 604 VALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 999998764 4678999999999999999999999999988543
No 6
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=2.6e-51 Score=532.35 Aligned_cols=364 Identities=31% Similarity=0.534 Sum_probs=315.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--ccc
Q 001222 430 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK--MEL 507 (1120)
Q Consensus 430 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~--~~l 507 (1120)
++++..+.|.+|+++|||||||||++|.|++++|.. ...++++++++..|..++.+|..+|++++++++++.|. +.+
T Consensus 436 ~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~ 514 (914)
T PRK11466 436 EAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD-NPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSV 514 (914)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccee
Confidence 445566788999999999999999999999999864 44677888999999999999999999999999999884 567
Q ss_pred cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCC
Q 001222 508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 587 (1120)
Q Consensus 508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 587 (1120)
+.++|++.+++++++..+...+..|++.+.++++++.|..+.+|+.+|+|||.|||+||+||++.|.|.|.+...
T Consensus 515 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~----- 589 (914)
T PRK11466 515 SDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD----- 589 (914)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-----
Confidence 778999999999999999999999999999999888887899999999999999999999999999988765321
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
...+.|+|.|+|+|||++.++++|+||++.+. ..+|+||||
T Consensus 590 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 630 (914)
T PRK11466 590 -----------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGL 630 (914)
T ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccH
Confidence 12477999999999999999999999998642 347999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001222 668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 747 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 747 (1120)
+|||++++.|||+|+++|.+|+||+|+|.||+..+.....
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------------------------------------- 670 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP---------------------------------------- 670 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc----------------------------------------
Confidence 9999999999999999999999999999999742100000
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhcccee
Q 001222 748 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 827 (1120)
Q Consensus 748 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 827 (1120)
T Consensus 671 -------------------------------------------------------------------------------- 670 (914)
T PRK11466 671 -------------------------------------------------------------------------------- 670 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhc
Q 001222 828 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 907 (1120)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1120)
. . +
T Consensus 671 ----------~-------~--------~---------------------------------------------------- 673 (914)
T PRK11466 671 ----------K-------T--------V---------------------------------------------------- 673 (914)
T ss_pred ----------c-------c--------c----------------------------------------------------
Confidence 0 0 0
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhc
Q 001222 908 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 987 (1120)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~ 987 (1120)
.......+++||||||++.++..+..+|+..
T Consensus 674 -------------------------------------------------~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~ 704 (914)
T PRK11466 674 -------------------------------------------------NQAVRLDGLRLLLIEDNPLTQRITAEMLNTS 704 (914)
T ss_pred -------------------------------------------------ccccccCCcceEEEeCCHHHHHHHHHHHHhc
Confidence 0000012468999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222 988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus 988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
|++|..+.+|.+|++.+.. ..+||+||||++||+|||++++++||+.. +++||
T Consensus 705 g~~v~~a~~~~~al~~~~~----------------------~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~-----~~~~i 757 (914)
T PRK11466 705 GAQVVAVGNAAQALETLQN----------------------SEPFAAALVDFDLPDYDGITLARQLAQQY-----PSLVL 757 (914)
T ss_pred CCceEEeCCHHHHHHHHHc----------------------CCCCCEEEEeCCCCCCCHHHHHHHHHhhC-----CCCCE
Confidence 9999999999999998852 24699999999999999999999999743 46899
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1068 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1068 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|++|++...+...+|+++|+++||.||++.++|..+|.++++..
T Consensus 758 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 758 IGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988653
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=2.5e-47 Score=507.97 Aligned_cols=375 Identities=29% Similarity=0.485 Sum_probs=311.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001222 427 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 506 (1120)
Q Consensus 427 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~ 506 (1120)
+++++++++..|.+|+++|||||||||++|.|++++|.......++..+.+..+..++++|..+|+++++++|++++...
T Consensus 701 ~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~ 780 (1197)
T PRK09959 701 ERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQ 780 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 34455666778999999999999999999999999986543333444567888899999999999999999999999999
Q ss_pred ccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCC
Q 001222 507 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 586 (1120)
Q Consensus 507 l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~ 586 (1120)
+..+++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.|||.|||+||+||++.|.+.+.+....
T Consensus 781 ~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~--- 857 (1197)
T PRK09959 781 LQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGH--- 857 (1197)
T ss_pred eeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEee---
Confidence 99999999999999999999999999999887654333346899999999999999999999999998776543211
Q ss_pred CCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccch
Q 001222 587 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 666 (1120)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLG 666 (1120)
..++...+.|+|.|+|+|||++.+++||+||++.+. .+..+|+|||
T Consensus 858 --------------------------------~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--~~~~~G~GLG 903 (1197)
T PRK09959 858 --------------------------------IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGLG 903 (1197)
T ss_pred --------------------------------ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc--CCCCCCcCch
Confidence 012234578999999999999999999999998754 2345799999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecc
Q 001222 667 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 746 (1120)
Q Consensus 667 LaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 746 (1120)
|+|||+||+.|||+|+++|.+|+||+|+|.||+........ ..
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~-------------------------------------~~ 946 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT-------------------------------------VE 946 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc-------------------------------------cc
Confidence 99999999999999999999999999999999742100000 00
Q ss_pred chhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhccce
Q 001222 747 EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAM 826 (1120)
Q Consensus 747 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~ 826 (1120)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhh
Q 001222 827 FAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQK 906 (1120)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1120)
. .. ..
T Consensus 947 -------------------~----------------------~~-----~~----------------------------- 951 (1197)
T PRK09959 947 -------------------A----------------------KA-----EQ----------------------------- 951 (1197)
T ss_pred -------------------c----------------------cc-----cc-----------------------------
Confidence 0 00 00
Q ss_pred ccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHh
Q 001222 907 FRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEK 986 (1120)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~ 986 (1120)
+ .......+||||||++.++..+..+|+.
T Consensus 952 ------------~---------------------------------------~~~~~~~~iLivdd~~~~~~~l~~~L~~ 980 (1197)
T PRK09959 952 ------------P---------------------------------------ITLPEKLSILIADDHPTNRLLLKRQLNL 980 (1197)
T ss_pred ------------c---------------------------------------cccccCceEEEcCCCHHHHHHHHHHHHH
Confidence 0 0000135899999999999999999999
Q ss_pred cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcc
Q 001222 987 VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1066 (1120)
Q Consensus 987 ~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ip 1066 (1120)
.|++|..+.++.+|++.+.. ..||+||+|++||+|+|+++++.||+.. +++|
T Consensus 981 ~g~~v~~~~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~g~~~~~~i~~~~-----~~~p 1032 (1197)
T PRK09959 981 LGYDVDEATDGVQALHKVSM-----------------------QHYDLLITDVNMPNMDGFELTRKLREQN-----SSLP 1032 (1197)
T ss_pred cCCEEEEECCHHHHHHHhhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CCCC
Confidence 99999999999999998853 4799999999999999999999999743 3689
Q ss_pred eEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1067 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1067 IIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||++|++.......+|+++||++||.||++.++|..+|.++..
T Consensus 1033 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1033 IWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987754
No 8
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-48 Score=481.63 Aligned_cols=579 Identities=33% Similarity=0.443 Sum_probs=358.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 001222 409 NGVSKEMKLRAELISHLDARRKAEASNNYKSQ--FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 486 (1120)
Q Consensus 409 ~~i~~~~~l~~~l~~~~~a~~~ae~~~~~Ks~--Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~ 486 (1120)
..+.+...++..+....+....++++...+++ |+++++|||||||++ |+...+ .+...+.+++.+......++..
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~-~~t~~~~~~~~~~~~~~~~~~~ 266 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGL-SDTDLDSDQRLILNTDRVSAKS 266 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--CcceEE-eccccchHHHHHHHHHhhhccc
Confidence 34445555566666666666667777777888 999999999999998 666554 3566788999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHH
Q 001222 487 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 566 (1120)
Q Consensus 487 L~~LIndiLdlskiesg~~~l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NA 566 (1120)
++.++++++|.+++++|.+++...+|++..+++.+++.+...+..++..+...++.+.|..+.+|+.+++||+.|+++||
T Consensus 267 ~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~na 346 (786)
T KOG0519|consen 267 LLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNA 346 (786)
T ss_pred cchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccce
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred hhccCCCcEEEEEeecccCCCCCCC--CCCccccccchhhhhhhhhhhccccccc-c------CCceEEEEEEEeCCCCC
Q 001222 567 IKFTSSGHIIIRGWCENLDTSKNTA--EFPTDRKKFGRAFRTKLKQQANNAMNFR-E------DNKLALCFEVDDTGCGI 637 (1120)
Q Consensus 567 IKfT~~G~v~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~l~~~V~DtG~GI 637 (1120)
||||..|++.++.+........+.. ++.......+....... +...+..... . .......+.+.|+|.||
T Consensus 347 ik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i 425 (786)
T KOG0519|consen 347 IKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFL-QKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEI 425 (786)
T ss_pred ecccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHH-HHhccccccccccccccchhhHhheEeccCCceeE
Confidence 9999999999887765433222111 11111111111000000 0000000000 0 00123457899999999
Q ss_pred ChhhHhh-hhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCc
Q 001222 638 DQSKWET-VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT 716 (1120)
Q Consensus 638 ~~e~l~~-IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~ 716 (1120)
+.+.... +|.+|-|++.+.++.++|+|+|+.||+.++++|+|.+.+.+....|++|+|.+++...........
T Consensus 426 ~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------ 499 (786)
T KOG0519|consen 426 QTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGD------ 499 (786)
T ss_pred ehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhh------
Confidence 9999998 999999999999999999999999999999999999999999999999999998865322111000
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeee-ccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLE-TSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+ ..+-...-.|..... .+.+.. ........ ...
T Consensus 500 ---------~~~-~~~~~~~~~G~~~~~~~~~~~~-------------------------------~~~~~~~~---~~~ 535 (786)
T KOG0519|consen 500 ---------EKR-LFQIILDFNGMLALLIDTKLGR-------------------------------EQIFQVLA---ELL 535 (786)
T ss_pred ---------hhh-hhhhhhhhcchhhhhhccccCc-------------------------------ceeEEEEe---ccc
Confidence 000 000000000100000 000000 00000000 000
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhccccc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILG 875 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~ 875 (1120)
...+|... ++....|.......+ ...++........ ....++-...|++.. .+...
T Consensus 536 ~~~vd~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~-----------~~~~~ 591 (786)
T KOG0519|consen 536 GISVDVSL-SLSLAFWFLDLSLSD-----LEVCKQIEDNEEG-------SNNGDISSSNPLHKS-----------LRDLT 591 (786)
T ss_pred Cccccccc-cchhhhhhccccccc-----chheEEeeecccc-------ccCCCcchhhhhhhc-----------cccch
Confidence 00111111 122222222211111 0001111000000 000000000000000 00000
Q ss_pred cc---cc-ccccCCCCCCccccccccccccchhhhccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCC
Q 001222 876 MQ---NR-ISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSS 951 (1120)
Q Consensus 876 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 951 (1120)
.. .. .............+....-.+... .........+....-.+.....+.....+..
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~- 654 (786)
T KOG0519|consen 592 SKLSSGSGLSLALCPENSQLMEGNIGLVPSSD----------------GLPKSPSLCLEACLRVELNSMGSKLSGNPEK- 654 (786)
T ss_pred hhcccccccccccchhhHHhhhcccccccccc----------------cCCccHHHHHHhhccccccccccccCCCccc-
Confidence 00 00 000000000000000000000000 0000000000000000000000000000000
Q ss_pred CCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCC
Q 001222 952 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPR 1031 (1120)
Q Consensus 952 ~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1120)
.........+.+.+|||||||++||++++.+|+++|+++.++.+|.||+++++ ..+.
T Consensus 655 -~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------------------~~~~ 711 (786)
T KOG0519|consen 655 -LAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------------------PPHS 711 (786)
T ss_pred -ccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------------------CCCc
Confidence 01111334567899999999999999999999999999999999999999995 2468
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1032 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1032 ~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||+|||||+||+|||||++++||+.+. .++|||||||++.++..++|++.|||+||.|||+.+.|...+++++.
T Consensus 712 y~~ifmD~qMP~mDG~e~~~~irk~~~----~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 712 YDVIFMDLQMPEMDGYEATREIRKKER----WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred ccEEEEEcCCcccchHHHHHHHHHhhc----CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999999999999999999999999875 57999999999999999999999999999999999999999998864
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=2.6e-44 Score=455.34 Aligned_cols=235 Identities=22% Similarity=0.310 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001222 427 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 506 (1120)
Q Consensus 427 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~ 506 (1120)
++++++++++.|++|+++|||||||||++|.|++++|.. ...++++.+.+..|..++.+|.++|+++++++|+|+|+..
T Consensus 439 a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~-~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~~~ 517 (894)
T PRK10618 439 AQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQ-TSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQDWK 517 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 344566677889999999999999999999999999864 3457788889999999999999999999999999999999
Q ss_pred ccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCC
Q 001222 507 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 586 (1120)
Q Consensus 507 l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~ 586 (1120)
++.++|++.+++++++..+...+.+|++.+.+.++...+..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...
T Consensus 518 l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~---- 593 (894)
T PRK10618 518 PEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD---- 593 (894)
T ss_pred ccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc----
Confidence 9999999999999999999999999999999888766666799999999999999999999999999988775421
Q ss_pred CCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccch
Q 001222 587 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 666 (1120)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLG 666 (1120)
.+....+.|+|.|||+|||++.+++||+||++.+. ..+..+|+|||
T Consensus 594 ---------------------------------~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~-~~~~~~GtGLG 639 (894)
T PRK10618 594 ---------------------------------ESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQ-GDRYGKASGLT 639 (894)
T ss_pred ---------------------------------cCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCC-CCCCCCCcChh
Confidence 11123588999999999999999999999998653 23445799999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 667 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 667 LaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
|+|||+||++|||+|+++|.+|+||+|+|+||+.
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 9999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=3.2e-42 Score=441.03 Aligned_cols=367 Identities=21% Similarity=0.263 Sum_probs=293.1
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 436 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 436 ~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
+...+|++++||||||||++|.|+++++........+..+++..|..++.++..+|++++++++.+.+ ..+++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 35678999999999999999999999987655555677788999999999999999999999996544 35689999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCC
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
+++++++..+... ..+++.+.++.++. +..+.+|+.+|.|||.||++||+||++. |.|.|.+...........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~---- 597 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVL---- 597 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccccc----
Confidence 9999999988754 45788888877655 3468999999999999999999999865 566666543211000000
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
. .........++|+|.|+|+|||++.+++||+|||+.+. +|+||||+|||+++
T Consensus 598 ------------------~---~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv 650 (828)
T PRK13837 598 ------------------S---HGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GGTGLGLATVHGIV 650 (828)
T ss_pred ------------------c---cccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CCCcchHHHHHHHH
Confidence 0 00001234588999999999999999999999996432 79999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHH
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQI 754 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 754 (1120)
+.|||+|+++|.+|+||+|+|+||.......... .
T Consensus 651 ~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~--------------------------------------~------- 685 (828)
T PRK13837 651 SAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ--------------------------------------A------- 685 (828)
T ss_pred HHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc--------------------------------------c-------
Confidence 9999999999999999999999997431100000 0
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccC
Q 001222 755 LRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQ 834 (1120)
Q Consensus 755 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 834 (1120)
T Consensus 686 -------------------------------------------------------------------------------- 685 (828)
T PRK13837 686 -------------------------------------------------------------------------------- 685 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhcccccccc
Q 001222 835 TTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEF 914 (1120)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1120)
.. .|
T Consensus 686 ~~-----------------~~----------------------------------------------------------- 689 (828)
T PRK13837 686 FF-----------------GP----------------------------------------------------------- 689 (828)
T ss_pred cC-----------------CC-----------------------------------------------------------
Confidence 00 00
Q ss_pred ccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEE
Q 001222 915 SSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVV 994 (1120)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a 994 (1120)
.......+.+||||||++.++..+...|+..||++..+
T Consensus 690 ------------------------------------------~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~ 727 (828)
T PRK13837 690 ------------------------------------------GPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGF 727 (828)
T ss_pred ------------------------------------------cccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 00000124589999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccC
Q 001222 995 PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1074 (1120)
Q Consensus 995 ~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~ 1074 (1120)
.++.+|++.+... ..+||+||+ .||.|+|+++++.||+.. +.+|||++|++.
T Consensus 728 ~s~~~al~~l~~~---------------------~~~~DlVll--~~~~~~g~~l~~~l~~~~-----~~ipIIvls~~~ 779 (828)
T PRK13837 728 STLAAAIAWISKG---------------------PERFDLVLV--DDRLLDEEQAAAALHAAA-----PTLPIILGGNSK 779 (828)
T ss_pred CCHHHHHHHHHhC---------------------CCCceEEEE--CCCCCCHHHHHHHHHhhC-----CCCCEEEEeCCC
Confidence 9999999988531 235899999 799999999999998743 468999999999
Q ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1075 MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1075 ~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
......+++.+| ++||.||++.++|..+|.+++++.
T Consensus 780 ~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 780 TMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred chhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 999999999999 999999999999999999998754
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-41 Score=358.77 Aligned_cols=224 Identities=27% Similarity=0.466 Sum_probs=194.8
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE-QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~-~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
-+.+|+||+||||||||+++.+++|.|.++...+.+ ...++..-.++++||.+||||||.+||++....+++.+.+|+.
T Consensus 224 ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft 303 (459)
T COG5002 224 ERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFT 303 (459)
T ss_pred HHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHhH
Confidence 356899999999999999999999999755332222 3467888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcE-EEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCCCCCC
Q 001222 516 KELEELVDMFSVQCSNHNVE-TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEF 593 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~-l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~ 593 (1120)
..+..+++.|...++++.+. +.-+++. -+.++..|++++-||+.|+|+||+||+|+| .|.+.+..
T Consensus 304 ~fl~~ii~R~e~~~~~e~~~~~vR~~p~-~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~------------ 370 (459)
T COG5002 304 AFLNEIINRFEMILKKETIARFVRDIPK-QDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ------------ 370 (459)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcCCC-CceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEee------------
Confidence 99999999998886665554 4445443 467899999999999999999999999986 56665421
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001222 594 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 673 (1120)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 673 (1120)
....+.++|.|.|.|||++++++||++|||+|..++|+.|||||||+|+|.|
T Consensus 371 ----------------------------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakei 422 (459)
T COG5002 371 ----------------------------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEI 422 (459)
T ss_pred ----------------------------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHH
Confidence 1235789999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 674 VNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 674 Ve~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|+.|||.||.+|++|+||+|+|+||...
T Consensus 423 V~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 423 VQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred HHHhCCeEEEecccCCceEEEEEecccC
Confidence 9999999999999999999999999753
No 12
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-37 Score=363.40 Aligned_cols=228 Identities=29% Similarity=0.496 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC-CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001222 430 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD-DQLTNE-QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 507 (1120)
Q Consensus 430 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~-~~l~~~-~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l 507 (1120)
.+.+..+.++.|++++||||||||++|.|.++.|... ..++++ +.+.+..|.+.+.+|.++|++|||++|+++|.+++
T Consensus 652 l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l 731 (890)
T COG2205 652 LAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNL 731 (890)
T ss_pred HHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Confidence 3445667889999999999999999999999998754 345555 56778889999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-EEEEEeecccCC
Q 001222 508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDT 586 (1120)
Q Consensus 508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~ 586 (1120)
+.++..+.+++.+++.........+. +.++++++++ .+.+|...|.|||.|||+||+||+++|. |.|.++..
T Consensus 732 ~~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~---- 804 (890)
T COG2205 732 KLDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE---- 804 (890)
T ss_pred ccchhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe----
Confidence 99999999999999987776665555 5666777776 5899999999999999999999999885 77776432
Q ss_pred CCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccch
Q 001222 587 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 666 (1120)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLG 666 (1120)
...++|+|.|+|+|||++++++||++||++++... ..|+|||
T Consensus 805 ------------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G~GLG 846 (890)
T COG2205 805 ------------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA--TRGVGLG 846 (890)
T ss_pred ------------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC--CCCcccc
Confidence 12488999999999999999999999999976333 6799999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 667 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 667 LaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
|+||+.||+.|||+|++++.+++|++|.|+||....
T Consensus 847 LsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 847 LAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 999999999999999999999999999999998653
No 13
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=1.5e-35 Score=361.43 Aligned_cols=368 Identities=22% Similarity=0.313 Sum_probs=284.1
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001222 438 KSQFLANMSHELRTPMAAIIGLLEILKSDD----QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 513 (1120)
Q Consensus 438 Ks~Fla~~SHELRTPL~~I~g~~elL~~~~----~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~d 513 (1120)
..++++.++||+||||+.|.|++++|.... .......+.+..|...+.++..++++++++++.. .+....++
T Consensus 163 l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~~ 238 (540)
T PRK13557 163 LGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVLN 238 (540)
T ss_pred hhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcccC
Confidence 457899999999999999999999875321 1234455678889999999999999999998853 34556789
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-EEEEEeecccCCCCCCCC
Q 001222 514 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAE 592 (1120)
Q Consensus 514 L~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~~~ 592 (1120)
+..+++.+...+. ....+++.+.+.+++..+ .+.+|+.++.|+|.||+.||+||++.|+ +.+............
T Consensus 239 l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~--- 313 (540)
T PRK13557 239 LNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDL--- 313 (540)
T ss_pred HHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcccc---
Confidence 9999998877654 334577888777766654 4789999999999999999999997654 444332111000000
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001222 593 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 672 (1120)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 672 (1120)
...........+.|+|.|+|+|||++.++++|++||+.+. ..+|+||||+|||+
T Consensus 314 ----------------------~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~ 367 (540)
T PRK13557 314 ----------------------AMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE----EGKGTGLGLSMVYG 367 (540)
T ss_pred ----------------------ccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----CCCCCCccHHHHHH
Confidence 0000001223578999999999999999999999996542 34699999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhH
Q 001222 673 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLT 752 (1120)
Q Consensus 673 LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 752 (1120)
+++.|||+|+++|.+|+||+|+|+||......... ..
T Consensus 368 ~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------------------------------~~----- 404 (540)
T PRK13557 368 FAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------------------------------QE----- 404 (540)
T ss_pred HHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC--------------------------------------CC-----
Confidence 99999999999999999999999998742100000 00
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeec
Q 001222 753 QILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVN 832 (1120)
Q Consensus 753 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 832 (1120)
T Consensus 405 -------------------------------------------------------------------------------- 404 (540)
T PRK13557 405 -------------------------------------------------------------------------------- 404 (540)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCccccccccccccchhhhcccccc
Q 001222 833 HQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 912 (1120)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1120)
.. .
T Consensus 405 ------------------------------------~~------~----------------------------------- 407 (540)
T PRK13557 405 ------------------------------------PK------A----------------------------------- 407 (540)
T ss_pred ------------------------------------CC------C-----------------------------------
Confidence 00 0
Q ss_pred ccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhcccCcEEEEEeCCHHHHHHHHHHHHhcCCEEE
Q 001222 913 EFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVS 992 (1120)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~ 992 (1120)
.......+.+|||+||++..+..+..+|+..|+.+.
T Consensus 408 --------------------------------------------~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~ 443 (540)
T PRK13557 408 --------------------------------------------RAIDRGGTETILIVDDRPDVAELARMILEDFGYRTL 443 (540)
T ss_pred --------------------------------------------cccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEE
Confidence 000001245899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-CCHHHHHHHHHhcccccCCCCcceEEEe
Q 001222 993 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALT 1071 (1120)
Q Consensus 993 ~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~-mdG~e~~~~IR~~~~~~~~~~ipIIalT 1071 (1120)
.+.++.+|++.+.. ...||+|++|+.||. ++|+++++.||+.. +.+|||++|
T Consensus 444 ~~~~~~~~~~~~~~----------------------~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~-----~~~~ii~~~ 496 (540)
T PRK13557 444 VASNGREALEILDS----------------------HPEVDLLFTDLIMPGGMNGVMLAREARRRQ-----PKIKVLLTT 496 (540)
T ss_pred EeCCHHHHHHHHhc----------------------CCCceEEEEeccCCCCCCHHHHHHHHHHhC-----CCCcEEEEc
Confidence 99999999998742 136999999999997 99999999999753 358999999
Q ss_pred ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1072 AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1072 a~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
.+........++.+|+++|+.||++.++|..++.+++...
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCC
Confidence 9988888888999999999999999999999999887654
No 14
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=4.4e-35 Score=343.19 Aligned_cols=233 Identities=23% Similarity=0.330 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001222 426 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL------TNEQYSTVCQIKKSSYALLRLLNRILDLSK 499 (1120)
Q Consensus 426 ~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l------~~~~~~~l~~I~~s~~~L~~LIndiLdlsk 499 (1120)
++++++++..+.|.+|++++||||||||++|.+++++|...... .+...+++..+..+..+|..++++++++++
T Consensus 139 ~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~ 218 (380)
T PRK09303 139 QENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGR 218 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677899999999999999999999999998743221 122556778899999999999999999999
Q ss_pred hccCCccccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEE
Q 001222 500 VESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIR 578 (1120)
Q Consensus 500 iesg~~~l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~ 578 (1120)
.+.+...++.+++++.+++++++..+...+..+++.+.++++.+.| .+.+|+.+|.|||.|||+||+||++.| .|.+.
T Consensus 219 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~ 297 (380)
T PRK09303 219 TRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTITLS 297 (380)
T ss_pred hhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999999999999999999999999999999999999877766 589999999999999999999999875 55554
Q ss_pred EeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCC
Q 001222 579 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 658 (1120)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~ 658 (1120)
+.. .....++|+|.|+|+|||++.+++||+|||+.+. .+
T Consensus 298 ~~~---------------------------------------~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~ 336 (380)
T PRK09303 298 MLH---------------------------------------RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DE 336 (380)
T ss_pred EEe---------------------------------------cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CC
Confidence 321 1122478999999999999999999999998865 34
Q ss_pred CCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 659 KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 659 ~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
..+|+||||+||+++|+.|||+|+++|.+++||+|+|+||+.
T Consensus 337 ~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 337 GTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 467999999999999999999999999999999999999974
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=9.5e-33 Score=328.91 Aligned_cols=221 Identities=25% Similarity=0.390 Sum_probs=189.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 516 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~ 516 (1120)
.+.+|++++||||||||++|.|++++|.......+...+.+..|.+++.+|..++++++++++++.+........+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999875444455666788899999999999999999999999988776778899999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCCCCCCCc
Q 001222 517 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPT 595 (1120)
Q Consensus 517 li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~~~ 595 (1120)
+++.+...+...+ .+++.+.+++++.. .+.+|+.+|+||+.||++||+||+++| .|.+.+..
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~-------------- 345 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQR-------------- 345 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE--------------
Confidence 9988877665555 67788888876654 588999999999999999999999876 45554321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 596 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
+...+.|+|.|+|+|||++.+++||+|||+.+...+++.+|+||||+|||++++
T Consensus 346 --------------------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 346 --------------------------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALS 399 (430)
T ss_pred --------------------------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHH
Confidence 112377999999999999999999999999887666677899999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecC
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
.|||+|+++|.+|+||+|+|+||..
T Consensus 400 ~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 400 HHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred HCCCEEEEEecCCCceEEEEEechH
Confidence 9999999999999999999999864
No 16
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-30 Score=295.73 Aligned_cols=211 Identities=24% Similarity=0.344 Sum_probs=180.8
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 439 SQFLANMSHELRTPMAAIIGLLEI---LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 439 s~Fla~~SHELRTPL~~I~g~~el---L~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
.++.+.+||||..||++|.++++- |.+ ....++-.+.+..|..-++||-.+...|-.|++--... ..++.+.
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLe-rgr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLE-RGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHH-cCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 468999999999999999999873 333 33467778899999999999999999999999865444 4689999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccC---CCcEEEEEeecccCCCCCCCC
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS---SGHIIIRGWCENLDTSKNTAE 592 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~---~G~v~v~~~~~~~~~~~~~~~ 592 (1120)
+.|++++..+..+.+..+..+..+.++. |.+|.+|+.||+|||.|||+||+..+. ++.|.|+++.+
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~---------- 528 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE---------- 528 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec----------
Confidence 9999999999999999999999887654 458999999999999999999999974 56777665321
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001222 593 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 672 (1120)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 672 (1120)
...+.++|.|||+||++|.+.++|+||+..+ ....|.||||+||++
T Consensus 529 ------------------------------~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK----~~~~GLGLGLaIS~~ 574 (603)
T COG4191 529 ------------------------------GGQVVLTVRDNGPGIAPEALPHLFEPFFTTK----PVGKGLGLGLAISQN 574 (603)
T ss_pred ------------------------------CCeEEEEEccCCCCCCHHHHHhhcCCccccC----cccCCcchhHHHHHH
Confidence 1247899999999999999999999999433 235699999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEec
Q 001222 673 LVNKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 673 LVe~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
|++-|||+|.+.+.++.|+.|++.|+.
T Consensus 575 i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 575 IARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred HHHHhCCeEEeecCCCCceEEEEEeec
Confidence 999999999999999999999999974
No 17
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=1.1e-31 Score=320.00 Aligned_cols=222 Identities=24% Similarity=0.352 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001222 431 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 510 (1120)
Q Consensus 431 ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~ 510 (1120)
.++..+.+.+|++++||||||||+.|.+.++++.. .++++.+ .+.+...+|..++++++.++|++.+...+..+
T Consensus 205 l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~---~~~~~~~---~i~~~~~~l~~li~~ll~~~rl~~~~~~~~~~ 278 (433)
T PRK10604 205 INALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN---LSAAESQ---ALNRDIGQLEALIEELLTYARLDRPQNELHLS 278 (433)
T ss_pred HHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcC---CCcHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Confidence 34444567889999999999999999999998752 2223222 37788999999999999999999999888999
Q ss_pred eccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCC
Q 001222 511 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 590 (1120)
Q Consensus 511 ~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~ 590 (1120)
++++.+++++++..+......+++++.++.+ +..+.+|+..+.||+.|||+||+||+. |.|.|.+...
T Consensus 279 ~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~-------- 346 (433)
T PRK10604 279 EPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLD-------- 346 (433)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEE--------
Confidence 9999999999999998888888877765433 234778999999999999999999985 6676665321
Q ss_pred CCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001222 591 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 670 (1120)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 670 (1120)
...++|+|.|+|+|||++++++||+|||+.+.+.+++.+|+||||+||
T Consensus 347 --------------------------------~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~iv 394 (433)
T PRK10604 347 --------------------------------GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIV 394 (433)
T ss_pred --------------------------------CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHH
Confidence 123789999999999999999999999999887777778999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 671 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 671 k~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
|++++.|||+|.++|.+++||+|++.+|...+
T Consensus 395 k~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 395 HSIALAMGGSVNCDESELGGARFSFSWPVWHN 426 (433)
T ss_pred HHHHHHCCCEEEEEecCCCeeEEEEEEeCCCC
Confidence 99999999999999999999999999998653
No 18
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=8.8e-31 Score=315.93 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=184.8
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
.+...+|++++||||||||++|.++++.|......+.++. ...+.+...++..+++++++.++.+++...+..+.+++
T Consensus 263 ~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~~~--~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~~l 340 (485)
T PRK10815 263 YTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVEQA--EPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELHSV 340 (485)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceecH
Confidence 3445679999999999999999999999875543444332 34567788899999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
..+++++++.+...+..+++.+.++++++. .+.+|+..|.||+.||++||+||++++ +.|.+..
T Consensus 341 ~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~~~~------------- 404 (485)
T PRK10815 341 APLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLEF-VEISARQ------------- 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEE-------------
Confidence 999999999999999999999998886554 578999999999999999999999753 4444321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
....+.|+|.|+|+|||++.+++||+||++.+.. .+|+||||+||++++
T Consensus 405 ---------------------------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk~iv 453 (485)
T PRK10815 405 ---------------------------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTL----RPGQGLGLSVAREIT 453 (485)
T ss_pred ---------------------------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----CCCcchhHHHHHHHH
Confidence 1124779999999999999999999999987532 359999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+.|||+|.++|.+++||+|++.||..
T Consensus 454 ~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 454 EQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred HHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 99999999999999999999999875
No 19
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=3.2e-30 Score=309.55 Aligned_cols=214 Identities=25% Similarity=0.437 Sum_probs=184.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 516 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~ 516 (1120)
...+|.+++||||||||++|.|+++++.......++..+.+..|.+.+.++..++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 34579999999999999999999999876555556666778889999999999999999999843 34567899999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCCc
Q 001222 517 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPT 595 (1120)
Q Consensus 517 li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~ 595 (1120)
++++++..+...+.++++.+.++.++..+ .+.+|+.+|.|++.||++||+||++. |.|.|.+...
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------- 377 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------- 377 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-------------
Confidence 99999999999999999999998876554 57899999999999999999999865 4566654221
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 596 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
...+.|+|+|+|+|||++.++++|++||+.+ .+|+||||+|||++++
T Consensus 378 ---------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 378 ---------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTTK------AEGTGLGLAVVHNIVE 424 (457)
T ss_pred ---------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccCC------CCCCcccHHHHHHHHH
Confidence 1237899999999999999999999998532 3589999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
.|||+|+++|.+|+||+|++.||+..
T Consensus 425 ~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 425 QHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred HCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 99999999999999999999999853
No 20
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=8.7e-30 Score=307.10 Aligned_cols=224 Identities=26% Similarity=0.416 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001222 432 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 511 (1120)
Q Consensus 432 e~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~ 511 (1120)
++....+.+|++++||||||||+.|.+.++.+........+..+.+..+.....++..++++++++++.+.+.......+
T Consensus 256 ~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 335 (482)
T PRK09835 256 EDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKM 335 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcee
Confidence 33444567899999999999999999999987655444455556677778888999999999999999999988888889
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-EEEEEeecccCCCCCC
Q 001222 512 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNT 590 (1120)
Q Consensus 512 ~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~ 590 (1120)
+++.+++++++..+...+.++++.+.+..+ +..+.+|+.+|+||+.||++||+||+++|+ |.|.+...
T Consensus 336 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~-------- 404 (482)
T PRK09835 336 LDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV-------- 404 (482)
T ss_pred ecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe--------
Confidence 999999999999999999999988876532 346899999999999999999999998654 66654211
Q ss_pred CCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001222 591 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 670 (1120)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 670 (1120)
...++|+|.|+|+|||++.++++|+|||+.+.+..+..+|+||||+||
T Consensus 405 --------------------------------~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~ 452 (482)
T PRK09835 405 --------------------------------DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIV 452 (482)
T ss_pred --------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHH
Confidence 113779999999999999999999999999876666668999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001222 671 RTLVNKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 671 k~LVe~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
+++++.|||+|+++|. ++||+|++.||.
T Consensus 453 ~~i~~~~~g~i~~~s~-~~g~~~~i~lP~ 480 (482)
T PRK09835 453 KSIVVAHKGTVAVTSD-ARGTRFVISLPR 480 (482)
T ss_pred HHHHHHCCCEEEEEEC-CCcEEEEEEeeC
Confidence 9999999999999997 469999999985
No 21
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=100.00 E-value=7.1e-30 Score=319.97 Aligned_cols=224 Identities=23% Similarity=0.345 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001222 431 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 510 (1120)
Q Consensus 431 ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~ 510 (1120)
.++..+...+|.+.+|||+||||+.|.+.++.+... ...++..+++..+...+.+|..++++++++++++.+......+
T Consensus 478 L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~-~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~ 556 (703)
T TIGR03785 478 LRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQ-ALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVE 556 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce
Confidence 334445567899999999999999999999998643 3566677788999999999999999999999999988888889
Q ss_pred eccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCC
Q 001222 511 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKN 589 (1120)
Q Consensus 511 ~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~ 589 (1120)
++++.+++++++..+...+..+++.+.++.+ +..+.+|+..|.||+.|||+||+||+++| .|.|.+..
T Consensus 557 ~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~-------- 625 (703)
T TIGR03785 557 DFDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQ-------- 625 (703)
T ss_pred eecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEE--------
Confidence 9999999999999999998888877766532 23689999999999999999999999765 45554321
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
+...+.|+|.|+|+||+++.+++||+|||+.+.......+|+||||+|
T Consensus 626 --------------------------------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 626 --------------------------------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred --------------------------------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 112477999999999999999999999998765444455689999999
Q ss_pred HHHHHHHcCCEEEEEEeCC-CceEEEEEEe
Q 001222 670 VRTLVNKMGGEIKVVKKNS-PGTLMQLYLL 698 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g-~GT~f~~~lp 698 (1120)
||+|++.|||+|.++|..+ .|++|+|.||
T Consensus 674 vr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 9999999999999999875 8999999987
No 22
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=2.7e-30 Score=310.38 Aligned_cols=228 Identities=29% Similarity=0.463 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001222 431 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 510 (1120)
Q Consensus 431 ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~ 510 (1120)
.++..+.+.+|++.+|||+||||+.|.+.++.+.... .+...+.+..+...+.+|..++++++++++.+.+...+...
T Consensus 233 l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~--~~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~~~~ 310 (466)
T PRK10549 233 LEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGV--RKFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYRKT 310 (466)
T ss_pred HHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Confidence 3444556788999999999999999999999987542 22223456778888999999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCC
Q 001222 511 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKN 589 (1120)
Q Consensus 511 ~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~ 589 (1120)
++++.+++++++..+...+..+++++.+++++.. .+.+|+.++.|++.|||+||+||+++| .|.|.+..
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~-------- 380 (466)
T PRK10549 311 PVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ-------- 380 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE--------
Confidence 9999999999999999999999999998876654 477999999999999999999999865 56655421
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
....++|+|.|+|+|||++.+++||+|||+.+.+..+..+|+||||+|
T Consensus 381 --------------------------------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 381 --------------------------------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred --------------------------------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 112478999999999999999999999999987666667899999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 670 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
|+++++.|||++.++|.+++||+|+|.||+..+
T Consensus 429 v~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~~ 461 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPFGGVSITVELPLERD 461 (466)
T ss_pred HHHHHHHcCCEEEEEECCCCeEEEEEEccCCCC
Confidence 999999999999999999999999999998653
No 23
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=7.9e-30 Score=304.79 Aligned_cols=219 Identities=27% Similarity=0.422 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
.+...+|.+++||||||||+.+.+.++.+.......++..+.+..+.....++..++++++++++++........+++++
T Consensus 238 ~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 317 (457)
T TIGR01386 238 FQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALERVRLDL 317 (457)
T ss_pred HHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCH
Confidence 33455799999999999999999999987655444455566777888889999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEF 593 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~ 593 (1120)
.++++++++.+...+.++++.+.++.+ ..+.+|+..|.+++.||++||+||+++ |.|.|.....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~----------- 382 (457)
T TIGR01386 318 AAELAKVAEYFEPLAEERGVRIRVEGE----GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR----------- 382 (457)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEecCC----ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec-----------
Confidence 999999999999999999988766532 358999999999999999999999976 4666654211
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001222 594 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 673 (1120)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 673 (1120)
...+.|+|.|+|+|||++.++++|++||+.+.+.++..+|+||||+||+++
T Consensus 383 -----------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 383 -----------------------------SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred -----------------------------CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHH
Confidence 124789999999999999999999999999877666678999999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEe
Q 001222 674 VNKMGGEIKVVKKNSPGTLMQLYLL 698 (1120)
Q Consensus 674 Ve~mGG~I~v~S~~g~GT~f~~~lp 698 (1120)
++.|||+|.+++ +++||+|++.||
T Consensus 434 ~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 434 MEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred HHHCCCEEEEEe-CCCceEEEEecC
Confidence 999999999999 999999999987
No 24
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=4.4e-29 Score=299.13 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001222 432 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 511 (1120)
Q Consensus 432 e~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~ 511 (1120)
++....+.+|++++||||||||++|.+.++++...... . ..+..+...+.+|..++++++++++.+... .+..+.
T Consensus 237 ~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~-~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~~ 311 (461)
T PRK09470 237 ERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGE-S---KELERIETEAQRLDSMINDLLVLSRNQQKN-HLERET 311 (461)
T ss_pred HHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCC-h---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccce
Confidence 33444566899999999999999999999987643221 1 245668889999999999999999987654 567788
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCC
Q 001222 512 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 591 (1120)
Q Consensus 512 ~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~ 591 (1120)
+++.+++++++..+...+..+++.+.++..++ +..+.+|+..|.+++.||++||+||++ +.|.|.+...
T Consensus 312 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~--------- 380 (461)
T PRK09470 312 FKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD--------- 380 (461)
T ss_pred ecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE---------
Confidence 99999999999988888888999888874333 446899999999999999999999986 5566654321
Q ss_pred CCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001222 592 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 671 (1120)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 671 (1120)
...+.|+|.|+|+||+++.++++|+|||+.+....+..+|+||||+||+
T Consensus 381 -------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~ 429 (461)
T PRK09470 381 -------------------------------KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVE 429 (461)
T ss_pred -------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHH
Confidence 1237799999999999999999999999988766666789999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 672 TLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 672 ~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
++++.|||++.+.|.+++||+|++.+|+.
T Consensus 430 ~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 430 NAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred HHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 99999999999999999999999999985
No 25
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=1.4e-29 Score=293.84 Aligned_cols=216 Identities=25% Similarity=0.348 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001222 434 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 513 (1120)
Q Consensus 434 ~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~d 513 (1120)
..+.+.+|++++||||||||++|.++++++.... ..+ ...+.+...++..++++++++++.+..........++
T Consensus 133 ~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~--~~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~ 206 (356)
T PRK10755 133 TLDQERLFTADVAHELRTPLAGIRLHLELLEKQH--HID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVK 206 (356)
T ss_pred HHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhcc--chh----HHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhh
Confidence 3344567999999999999999999999876432 121 2345566788999999999999988776666667788
Q ss_pred H-HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCCCC
Q 001222 514 L-QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTA 591 (1120)
Q Consensus 514 L-~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~ 591 (1120)
+ .+++..++..+...+..+++.+.++..+ .+..+.+|+.++++|+.||++||+||+++| .|.+.+..
T Consensus 207 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~---------- 275 (356)
T PRK10755 207 LLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ---------- 275 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE----------
Confidence 8 8899998888988888999888774322 234689999999999999999999999765 56665421
Q ss_pred CCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001222 592 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 671 (1120)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 671 (1120)
+...+.|+|+|+|+||+++.++++|++||+.+. ..+|+||||+||+
T Consensus 276 ------------------------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~ 321 (356)
T PRK10755 276 ------------------------------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVS 321 (356)
T ss_pred ------------------------------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHH
Confidence 112378999999999999999999999998653 3469999999999
Q ss_pred HHHHHcCCEEEEEEeCC-CceEEEEEEecC
Q 001222 672 TLVNKMGGEIKVVKKNS-PGTLMQLYLLLG 700 (1120)
Q Consensus 672 ~LVe~mGG~I~v~S~~g-~GT~f~~~lpl~ 700 (1120)
++++.|||+|+++|.++ +||+|++.||..
T Consensus 322 ~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 322 RITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred HHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 99999999999999998 999999999864
No 26
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=3.7e-30 Score=329.61 Aligned_cols=226 Identities=26% Similarity=0.433 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001222 432 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ-LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 510 (1120)
Q Consensus 432 e~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~-l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~ 510 (1120)
.+..+.|.+|++.+||||||||++|.|++++|..+.. ...+..+.+..|.+...++.+++++++++++++++.+.+...
T Consensus 658 ~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~ 737 (895)
T PRK10490 658 SEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKE 737 (895)
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 3445678899999999999999999999998864322 223344567889999999999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCC
Q 001222 511 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKN 589 (1120)
Q Consensus 511 ~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~ 589 (1120)
++++.+++++++..+...+..+++.+. ++++.+ .+.+|+.+|.|||.|||+||+||+++| .|.+.+...
T Consensus 738 ~~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~------- 807 (895)
T PRK10490 738 WLTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE------- 807 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-------
Confidence 999999999999999888877776654 455544 589999999999999999999999876 455543211
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
...+.|+|.|+|+|||++.+++||+|||+.+.. ...+|+||||+|
T Consensus 808 ---------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~I 852 (895)
T PRK10490 808 ---------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLAI 852 (895)
T ss_pred ---------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHHH
Confidence 124789999999999999999999999987643 334699999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 670 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
||++++.|||+|+++|.+++||+|+|.||+..+
T Consensus 853 vk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~~ 885 (895)
T PRK10490 853 CRAIVEVHGGTIWAENRPEGGACFRVTLPLETP 885 (895)
T ss_pred HHHHHHHcCCEEEEEECCCCeEEEEEEeECCCC
Confidence 999999999999999999999999999998643
No 27
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=6e-30 Score=307.73 Aligned_cols=214 Identities=18% Similarity=0.244 Sum_probs=166.9
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001222 436 NYKSQFLANMSHELRTPMAAIIGLLEILKSDD--QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 513 (1120)
Q Consensus 436 ~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~--~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~d 513 (1120)
+...++++.++|||||||++|.|++++|.... ...++....+..+...+.++...+.++++ ........+||
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~d 347 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVN 347 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCccccccccc
Confidence 33456788999999999999999999986431 11233333344444444333333343332 22344567899
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-----EEEEEeecccCCCC
Q 001222 514 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-----IIIRGWCENLDTSK 588 (1120)
Q Consensus 514 L~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-----v~v~~~~~~~~~~~ 588 (1120)
+..++++++..+...+..+++.+.++.++.+| .+.+|+.+|+|||.||++||+||++.|. |.+....
T Consensus 348 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------- 419 (494)
T TIGR02938 348 LNQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL------- 419 (494)
T ss_pred HHHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-------
Confidence 99999999999999999999999998877766 5889999999999999999999997662 3332211
Q ss_pred CCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHH
Q 001222 589 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 668 (1120)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLa 668 (1120)
....+.|+|+|||+|||++.+++||+|||+.+... .+||||||+
T Consensus 420 ---------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL~ 463 (494)
T TIGR02938 420 ---------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGLS 463 (494)
T ss_pred ---------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccHH
Confidence 12247899999999999999999999999876432 579999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001222 669 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 669 Ivk~LVe~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
|||+||++|||+|+++|.+|+||+|+|+||+
T Consensus 464 i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 464 VAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred HHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 9999999999999999999999999999985
No 28
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.97 E-value=5.6e-28 Score=290.14 Aligned_cols=220 Identities=29% Similarity=0.428 Sum_probs=190.1
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 436 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 436 ~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
+...+|++.++||||||++.+.+.++.|.. ....++..+.+..+...+.++..++++++++++++.+.......++++.
T Consensus 254 ~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK11100 254 AYVEQYVQTLTHELKSPLAAIRGAAELLQE-DPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALA 332 (475)
T ss_pred HHHHHHHHHhhhhhcCcHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHH
Confidence 345679999999999999999999999875 3335566678889999999999999999999999998877788999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCC
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
+++++++..+...+..+++.+.++++ +..+.+|...|.+++.||+.||+||+.+ |.|.|.+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~------------ 397 (475)
T PRK11100 333 ALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD------------ 397 (475)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------------
Confidence 99999999999999999999988765 3468899999999999999999999965 5666654211
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
...+.++|.|+|+|||++.++++|++|++.+.. ....+|+||||+||++++
T Consensus 398 ----------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 398 ----------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVA 448 (475)
T ss_pred ----------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHH
Confidence 124779999999999999999999999976532 234579999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+.|||+|.++|.++.||+|++.||..
T Consensus 449 ~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 449 RLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred HHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 99999999999999999999999864
No 29
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=2.7e-28 Score=291.85 Aligned_cols=215 Identities=23% Similarity=0.322 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
.+...+|++++||||||||+.+.+.++.+.......+.....+..+...+.++..++++++.+++++.+......+++++
T Consensus 234 ~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~~~~~~l 313 (449)
T PRK10337 234 MVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPL 313 (449)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCH
Confidence 34456799999999999999999999987543333334456788899999999999999999999998876667789999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEF 593 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~ 593 (1120)
.+++++++..+...+..+++.+.+++++. +..+.+|+..+.+++.||++||+||+++| .|.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~------------- 379 (449)
T PRK10337 314 EDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLN------------- 379 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE-------------
Confidence 99999999999999999999999887654 33578999999999999999999999875 4544321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001222 594 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 673 (1120)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 673 (1120)
...++|.|+|+|||+++++++|+|||+.+. +..+|+||||+||+++
T Consensus 380 -------------------------------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~iv~~i 425 (449)
T PRK10337 380 -------------------------------ARNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLSIVRRI 425 (449)
T ss_pred -------------------------------eeEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHHHHHHH
Confidence 014889999999999999999999998653 2346999999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEE
Q 001222 674 VNKMGGEIKVVKKNSPGTLMQLYL 697 (1120)
Q Consensus 674 Ve~mGG~I~v~S~~g~GT~f~~~l 697 (1120)
+++|||+|+++|.+++|++|++.|
T Consensus 426 ~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 426 AKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred HHHcCCEEEEEecCCCeEEEEEeC
Confidence 999999999999999999998864
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=2.9e-28 Score=290.29 Aligned_cols=214 Identities=24% Similarity=0.385 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001222 430 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 509 (1120)
Q Consensus 430 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~ 509 (1120)
+.++..+.+..|++++||||||||+.|.+.++++..+ .......+.+...+|..++++++++.+.+.. ...
T Consensus 221 ~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~---~~~ 291 (435)
T PRK09467 221 GIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLRTGQE---MPM 291 (435)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCc
Confidence 3445566788899999999999999999999876421 1223446788899999999999999987653 345
Q ss_pred eeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCC
Q 001222 510 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 510 ~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~ 589 (1120)
.++++.+++++++..+. ..+..+.+++++. +..+.+|+..|++++.||++||+||+ .|.|.|.....
T Consensus 292 ~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~------- 358 (435)
T PRK09467 292 EMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE------- 358 (435)
T ss_pred cccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec-------
Confidence 68899999999887654 3445555555444 33789999999999999999999998 56677654321
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
...++|+|.|+|+||+++.++++|+||++++.. +..+|+||||+|
T Consensus 359 ---------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--~~~~g~GlGL~i 403 (435)
T PRK09467 359 ---------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--RGSSGTGLGLAI 403 (435)
T ss_pred ---------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC--CCCCCeehhHHH
Confidence 124789999999999999999999999998754 334799999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 670 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
|+++++.|||+|.+.|.+++|++|++.||+.
T Consensus 404 v~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred HHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 9999999999999999999999999999974
No 31
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-28 Score=262.52 Aligned_cols=222 Identities=23% Similarity=0.391 Sum_probs=178.6
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 436 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 436 ~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
++-+.++++++||||+||.+|.|.+++|...- .++..+++.+.|.++++||.+|++.+.-|+--. .....++|+.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l-pd~~~~~lt~lIieE~DRl~~LVDRme~~~~~r----p~~r~~~NIH 204 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERAL-PDEALRELTQLIIEEADRLRNLVDRLEVLGPQR----PGDRVPVNIH 204 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CcccccchHH
Confidence 34567899999999999999999999996432 234478888899999999999999997766422 3445589999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccC---C--CcEEEEEeecccCCCCCC
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS---S--GHIIIRGWCENLDTSKNT 590 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~---~--G~v~v~~~~~~~~~~~~~ 590 (1120)
.+++.+.......+ ..++.+.-++++.+|. +.+|+++|.|+|.||+.||+..-. . |.|+++.+....
T Consensus 205 ~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q------ 276 (363)
T COG3852 205 EVLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQ------ 276 (363)
T ss_pred HHHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceE------
Confidence 99999887655443 4678999999999985 899999999999999999999865 3 777776532100
Q ss_pred CCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001222 591 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 670 (1120)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 670 (1120)
+.. .....+..+.++|.|+|+|||++-++++|.||..+ +.+||||||+|+
T Consensus 277 -------------~~i-----------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------r~~GsGLGLala 326 (363)
T COG3852 277 -------------LTI-----------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------REGGTGLGLALA 326 (363)
T ss_pred -------------EEc-----------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------CCCCccccHHHH
Confidence 000 00123445788999999999999999999999843 357999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 671 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 671 k~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
++|+..|||.|+++|.+| .|+|++.+|+..
T Consensus 327 ~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 327 QNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred HHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 999999999999999997 699999999865
No 32
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-28 Score=279.28 Aligned_cols=230 Identities=27% Similarity=0.383 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001222 427 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD--DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 504 (1120)
Q Consensus 427 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~--~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~ 504 (1120)
.+++.+++|.--..|...+||+||.||+.|.+++++|.+. +.++.+.++++..+.+.+.++.+||+|++.+|++..-.
T Consensus 513 l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~ 592 (750)
T COG4251 513 LRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTE 592 (750)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 3456677888888999999999999999999999999876 77889999999999999999999999999999996654
Q ss_pred ccccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeeccc
Q 001222 505 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 584 (1120)
Q Consensus 505 ~~l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~ 584 (1120)
.. .++.|+.+++++++..........++++.+.. +| .+.+|+.++.|++.||+.|||||..++.-.|.++.+.
T Consensus 593 ~~--l~~td~~~vv~~vl~~l~~ri~dtgaei~i~~---lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r- 665 (750)
T COG4251 593 AP--LQPTDVQKVVDKVLLELSQRIADTGAEIRIAP---LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER- 665 (750)
T ss_pred CC--CCCcchHHHHHHHHHhcccccccccceEEecc---cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec-
Confidence 44 45889999999999999999999999887653 56 4899999999999999999999987663333332211
Q ss_pred CCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCcc
Q 001222 585 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 664 (1120)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtG 664 (1120)
....++|.|.|+|+||+++..++||..|.+... ..++.|||
T Consensus 666 -------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG 706 (750)
T COG4251 666 -------------------------------------QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTG 706 (750)
T ss_pred -------------------------------------cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc--hhhhcCCC
Confidence 112378999999999999999999999998753 45678999
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 665 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 665 LGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
+||+|||+|++.|+|+|+|+|.+|+|+||.|++|....
T Consensus 707 ~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~ 744 (750)
T COG4251 707 LGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGE 744 (750)
T ss_pred ccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCc
Confidence 99999999999999999999999999999999998754
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=7.4e-28 Score=274.33 Aligned_cols=219 Identities=30% Similarity=0.474 Sum_probs=189.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~-~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
.+.+|++.++|||||||++|.++++.|... ....++..+++..|...+.++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 3445566677888999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCCCCCCC
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
++++.++..+...+..+++.+.+.+++ +..+.+|+..|.+||.||+.||+||++.+ .|.|.+...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 999999999999999999999988733 34689999999999999999999998754 455543211
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
+ ..+.|.|.|+|+|||++.++++|++|++.+...+...+|+||||+||++++
T Consensus 259 --------------------------~--~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 259 --------------------------G--GGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred --------------------------C--CEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHH
Confidence 1 137799999999999999999999999877655556689999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEE
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYL 697 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~l 697 (1120)
+.|||+|++.|.+++||+|+++|
T Consensus 311 ~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 311 SRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred HHCCCEEEEEecCCCCeEEEEEC
Confidence 99999999999999999999874
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=1.9e-26 Score=266.56 Aligned_cols=217 Identities=24% Similarity=0.409 Sum_probs=170.8
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 516 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~ 516 (1120)
...+|++.+||||||||++|.|++++|.+.. .+++..+++..|..++.++..++++++++.+... ...+++..
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~ 201 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKAL-PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHK 201 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHH
Confidence 4468999999999999999999999986533 3556677888899999999999999998765432 34678999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcc-C-CCcEEEEEeecccCCCCCCCCCC
Q 001222 517 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-S-SGHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 517 li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-~-~G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
+++.+...+.... .+++.+.++.+++.+ .+.+|+.+|.||+.||++||+||+ + .|.|.+.........
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~-------- 271 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT-------- 271 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc--------
Confidence 9999888776554 467888887766655 489999999999999999999997 3 445555432110000
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
.........+.++|.|+|+|||++.++++|+|||.. +.+|+||||+|||++|
T Consensus 272 ----------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g~GlGL~i~~~iv 323 (348)
T PRK11073 272 ----------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLI 323 (348)
T ss_pred ----------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCCccCCHHHHHHHH
Confidence 000011224679999999999999999999999853 2469999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEec
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
+.|||+|+++|.+| ||+|+++||+
T Consensus 324 ~~~gG~i~~~s~~~-~~~f~i~lP~ 347 (348)
T PRK11073 324 DQHSGKIEFTSWPG-HTEFSVYLPI 347 (348)
T ss_pred HHcCCeEEEEecCC-ceEEEEEEec
Confidence 99999999999888 4999999996
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=9e-25 Score=246.40 Aligned_cols=217 Identities=40% Similarity=0.602 Sum_probs=182.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-ccccceeccHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK-MELENTEFDLQ 515 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~-~~l~~~~~dL~ 515 (1120)
.+..|++.++||+|||++++.+.++.+... . .......+..+...+.++..++++++++++.+.+. .......+++.
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-L-LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLA 191 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHH
Confidence 478999999999999999999999865432 1 22256677778889999999999999999998873 44446778899
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCc
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 595 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~ 595 (1120)
.++++++..+...+..+++.+....+ .+..+.+|+.++.|+|.||++||+||++.+.|.|.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~------------- 256 (336)
T COG0642 192 ELLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQD------------- 256 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEec-------------
Confidence 99999999999888888888886654 234689999999999999999999999966676654211
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 596 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
++ .+.++|.|+|+||+++.++++|+||++.+... .|+||||+||+++++
T Consensus 257 -------------------------~~--~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~----~g~GlGL~i~~~~~~ 305 (336)
T COG0642 257 -------------------------DE--QVTISVEDTGPGIPEEELERIFEPFFRTDKSR----SGTGLGLAIVKRIVE 305 (336)
T ss_pred -------------------------CC--eEEEEEEcCCCCCCHHHHHHhccCeeccCCCC----CCCCccHHHHHHHHH
Confidence 11 57899999999999999999999999876432 299999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
.|||+|.++|.++.||+|++++|...
T Consensus 306 ~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 306 LHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred HcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999864
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=5.9e-25 Score=270.92 Aligned_cols=213 Identities=25% Similarity=0.516 Sum_probs=183.2
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001222 438 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 517 (1120)
Q Consensus 438 Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~l 517 (1120)
..+|+++++|||||||+.|.|+++++... ..+++..+.+..|.+.+.++..++++++++++.+... ..++++..+
T Consensus 390 l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 390 LGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 56899999999999999999999988654 4566777889999999999999999999999876543 468999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCCcc
Q 001222 518 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTD 596 (1120)
Q Consensus 518 i~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~ 596 (1120)
++++...+...+..+++.+.++++++.+ .+.+|+..|.|++.||+.||+||++. |.|.|.+...
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~-------------- 529 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQY-------------- 529 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEc--------------
Confidence 9999999998888899999888876655 47899999999999999999999764 5666654321
Q ss_pred ccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHH
Q 001222 597 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~ 676 (1120)
++. .+.|+|+|+|+|||++.++++|+||++.+ ..|+||||++||++|++
T Consensus 530 ------------------------~~~-~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~glGL~~~~~~~~~ 578 (607)
T PRK11360 530 ------------------------SDG-QVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGTGLGLALSQRIINA 578 (607)
T ss_pred ------------------------CCC-EEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCCchhHHHHHHHHHH
Confidence 111 17899999999999999999999999643 35899999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEecCC
Q 001222 677 MGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 677 mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|||+|+++|.+|+||+|+++||+..
T Consensus 579 ~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 579 HGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred cCCEEEEEEcCCCceEEEEEecCCC
Confidence 9999999999999999999999853
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=6.7e-24 Score=266.82 Aligned_cols=203 Identities=24% Similarity=0.366 Sum_probs=162.0
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001222 438 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 517 (1120)
Q Consensus 438 Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~l 517 (1120)
..++.+.++||||||++.+..+++.+......++...+.++.+.++.+++.++++++.+.. ...+..++++.++
T Consensus 475 ~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~l 548 (679)
T TIGR02916 475 FNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDL 548 (679)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHH
Confidence 3568899999999999999998887654443344455677788899999999888775432 2456678999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCCcc
Q 001222 518 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTD 596 (1120)
Q Consensus 518 i~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~ 596 (1120)
++++.+.+... ...+++ +++++ ..+.+|+.++.||+.||++||+||+++ |.|.|.+...
T Consensus 549 l~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~-------------- 608 (679)
T TIGR02916 549 LRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE-------------- 608 (679)
T ss_pred HHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc--------------
Confidence 99998876543 233333 33333 368999999999999999999999975 5677765321
Q ss_pred ccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhh-HhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 597 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK-WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~-l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
+ ..++|+|+|+|+|||++. .+++|+||++.+ .+|+||||+|||++++
T Consensus 609 ------------------------~--~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 609 ------------------------C--GAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GAGMGIGVYECRQYVE 656 (679)
T ss_pred ------------------------C--CEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CCCcchhHHHHHHHHH
Confidence 1 247899999999999999 999999998543 2699999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEe
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLL 698 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lp 698 (1120)
.|||+|+++|.+|+||+|+++||
T Consensus 657 ~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 657 EIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred HcCCEEEEEecCCCceEEEEEeC
Confidence 99999999999999999999987
No 38
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.92 E-value=3.8e-22 Score=244.15 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=136.3
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHH
Q 001222 439 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 518 (1120)
Q Consensus 439 s~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li 518 (1120)
.++++.+|||+||||++|.|++++... ++..+++.. .+.+....++++++..+ .+ ++
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~-----~~ 396 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY-----DQLEDYILK---TANNYQEEIGSLLGKIK----------SP-----VI 396 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch-----HHHHHHHHH---HHHHHHHHHHHHHHhcc----------CH-----HH
Confidence 457888999999999999999986421 222223222 22222233333332111 01 12
Q ss_pred HHHHHHHHHHhhcCCcEEEEEeCCCCCceE-EeCHHHHHHHHHHHHHHHhhccC---CCcEEEEEeecccCCCCCCCCCC
Q 001222 519 EELVDMFSVQCSNHNVETVLDLSDNIPRNV-RGDPGRVFQIFSNLINNSIKFTS---SGHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 519 ~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v-~gD~~rL~QIL~NLL~NAIKfT~---~G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
...+......+.++++.+.++.++.+|... ..+...|.|||.||++||+||+. .|.|.+.+...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222222334567788988887766554321 23446899999999999999963 35566554211
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
...+.|+|.|+|+|||++.++++|+||+.. +.+|+||||+|||++|
T Consensus 465 ----------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~g~GlGL~iv~~iv 510 (542)
T PRK11086 465 ----------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGSNRGVGLYLVKQSV 510 (542)
T ss_pred ----------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCCCCcCcHHHHHHHH
Confidence 124789999999999999999999999843 2459999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+.|||+|+++|.+|+||+|+|+||+..
T Consensus 511 ~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 511 ENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred HHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 999999999999999999999999864
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=269.15 Aligned_cols=208 Identities=17% Similarity=0.187 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001222 427 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 506 (1120)
Q Consensus 427 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~ 506 (1120)
+.++++++.+.|++|+++|||||||||++|.|+++++.... .+++....+..+......+..+++.++..
T Consensus 594 aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 663 (807)
T PRK13560 594 AEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKL-HDEEAKCAFAESQDRICAMALAHEKLYQS--------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 33445566777999999999999999999999999876432 34455555544444444444444443321
Q ss_pred ccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC----CcEEEEEeec
Q 001222 507 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCE 582 (1120)
Q Consensus 507 l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~ 582 (1120)
....++++.+++++++..+...+..+...+.+.++.+.+.....+...+.|||.||++||+||+.. |.|.|.+..
T Consensus 664 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~- 742 (807)
T PRK13560 664 EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE- 742 (807)
T ss_pred ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE-
Confidence 234578999999999998887776666556555554433333456677899999999999999843 456554321
Q ss_pred ccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001222 583 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 662 (1120)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G 662 (1120)
.+...+.|+|+|||+|||++.. ...|
T Consensus 743 --------------------------------------~~~~~v~i~V~D~G~GI~~~~~----------------~~~~ 768 (807)
T PRK13560 743 --------------------------------------QGDGMVNLCVADDGIGLPAGFD----------------FRAA 768 (807)
T ss_pred --------------------------------------cCCCEEEEEEEeCCCcCCcccc----------------cccc
Confidence 1123578999999999998731 1236
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 663 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 663 tGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+||||+|||+||+.|||+|+|+|. +||+|+|+||+..
T Consensus 769 ~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 769 ETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred CCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 789999999999999999999994 7999999999853
No 40
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.90 E-value=6.4e-22 Score=227.77 Aligned_cols=206 Identities=19% Similarity=0.338 Sum_probs=165.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 441 FLANMSHELRTPMAAIIGLLEILKSD--DQLTN---EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 441 Fla~~SHELRTPL~~I~g~~elL~~~--~~l~~---~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
-...++||||+||+-|.-.+|-|+.. ..+++ .-.+..+.|.+....+.+||++.-+|+|+-+- +.++.||.
T Consensus 489 VArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p----~~e~~dL~ 564 (712)
T COG5000 489 VARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAP----KLEKSDLR 564 (712)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCCcchHH
Confidence 45678999999999999999988643 23333 12346777999999999999999999997644 45689999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-------c-EEEEEeecccCCC
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-------H-IIIRGWCENLDTS 587 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-------~-v~v~~~~~~~~~~ 587 (1120)
+++++++..+... ..++.+..++..+ |....+|+..|.|+|.||+.||..+-..- . |+++.
T Consensus 565 ~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~-------- 633 (712)
T COG5000 565 ALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL-------- 633 (712)
T ss_pred HHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE--------
Confidence 9999999876543 4577888888776 77788899999999999999999985421 1 21111
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
.+....+++.|.|||.|.|.|.++++||||.. .+..||||||
T Consensus 634 --------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvT------tr~KGTGLGL 675 (712)
T COG5000 634 --------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVT------TREKGTGLGL 675 (712)
T ss_pred --------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCcee------cccccccccH
Confidence 12233588999999999999999999999973 2346999999
Q ss_pred HHHHHHHHHcCCEEEEEEe-CCCceEEEEEEec
Q 001222 668 SIVRTLVNKMGGEIKVVKK-NSPGTLMQLYLLL 699 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~-~g~GT~f~~~lpl 699 (1120)
+|||+|+|-|||.|.+... .-.|.++++.||.
T Consensus 676 AiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 676 AIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred HHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 9999999999999999998 4459999999986
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=2e-21 Score=234.92 Aligned_cols=196 Identities=16% Similarity=0.290 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
++.+.++.+.++||+||||++|.+.++++++....+++..+..+.|.+.+.++.+.++++++..+- ...+++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 455778899999999999999999999886543334445567778999999999999999875542 22447899
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
.+.+++++..+.......++++..+.++. + ...+|+..+.|++.|+++||+||++.|.|.+.....
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~~-~-l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDES-A-LSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCcc-c-CChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 99999999887655544444444443322 2 456778889999999999999999988877764321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
...+.++|+|+|+|||+++ .|+|+||+|||+++
T Consensus 439 ----------------------------~~~i~l~V~DnG~Gi~~~~-------------------~~~GLGL~ivr~iv 471 (495)
T PRK11644 439 ----------------------------DERLMLVIEDDGSGLPPGS-------------------GQQGFGLRGMRERV 471 (495)
T ss_pred ----------------------------CCEEEEEEEECCCCCCcCC-------------------CCCCCcHHHHHHHH
Confidence 1247899999999998652 36799999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEec
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
+.|||+|+++| ++||+|++++|.
T Consensus 472 ~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 472 TALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred HHcCCEEEEEc--CCCEEEEEEEeC
Confidence 99999999999 889999999984
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.88 E-value=5e-21 Score=235.10 Aligned_cols=196 Identities=19% Similarity=0.271 Sum_probs=145.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001222 440 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 519 (1120)
Q Consensus 440 ~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~ 519 (1120)
+.+..++||+++||++|.|++++-. ..+.+..|...+.++..+++++...-+. ..+..
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~--------~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~ 397 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE--------YDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAG 397 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch--------hhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHH
Confidence 4566789999999999999987521 1235566778888888888887764220 11112
Q ss_pred HHHHHHHHHhhcCCcEEEEEeCCCCC-ceEEeCHHHHHHHHHHHHHHHhhcc---CCC--cEEEEEeecccCCCCCCCCC
Q 001222 520 ELVDMFSVQCSNHNVETVLDLSDNIP-RNVRGDPGRVFQIFSNLINNSIKFT---SSG--HIIIRGWCENLDTSKNTAEF 593 (1120)
Q Consensus 520 ~v~~~~~~~a~~k~i~l~~~i~~~~p-~~v~gD~~rL~QIL~NLL~NAIKfT---~~G--~v~v~~~~~~~~~~~~~~~~ 593 (1120)
.+......+.++++.+.+..+.... ....+|+..|.|||.||++||+||. ++| .|.+.+..
T Consensus 398 -~l~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------ 464 (545)
T PRK15053 398 -LLFGKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------ 464 (545)
T ss_pred -HHHHHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------------
Confidence 2222235567788888776543321 1246799999999999999999994 334 34443311
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001222 594 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 673 (1120)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 673 (1120)
....+.|+|.|+|+|||++.+++||++||+.+ .+..+|+||||+|||++
T Consensus 465 ----------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~GlGL~ivk~i 513 (545)
T PRK15053 465 ----------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEHGIGLYLIASY 513 (545)
T ss_pred ----------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCceeCHHHHHHH
Confidence 11247899999999999999999999999643 23456899999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 674 VNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 674 Ve~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|+.|||+|+++|.+|.||+|++.||...
T Consensus 514 v~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 514 VTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 9999999999999999999999999754
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.86 E-value=7e-20 Score=203.42 Aligned_cols=210 Identities=18% Similarity=0.295 Sum_probs=172.9
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001222 440 QFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 517 (1120)
Q Consensus 440 ~Fla~~SHELRTPL~~I~g~~elL~~--~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~l 517 (1120)
+=+.++||||..|||++..|+=.... +...+.....++..|..-.+|+-.+|+.+-.|+|-.+++-. ..|++|.++
T Consensus 453 qTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L~~~ 530 (673)
T COG4192 453 QTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRLNSV 530 (673)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccHHHH
Confidence 45788999999999999988754321 23345667789999999999999999999999998777644 458999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC--cEEEEEeecccCCCCCCCCCCc
Q 001222 518 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPT 595 (1120)
Q Consensus 518 i~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G--~v~v~~~~~~~~~~~~~~~~~~ 595 (1120)
++.+.+.+..+.+.+.+.+..-. +. .+|.||..++.|||.||+-||+.....- .|.+.+.
T Consensus 531 v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~--------------- 592 (673)
T COG4192 531 VEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL--------------- 592 (673)
T ss_pred HHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee---------------
Confidence 99999999999999888887544 22 2699999999999999999999986433 3333221
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 596 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
.++...+++.|.|+|.|-|-+-.+++|.||. +.+.-|.||||+||..|++
T Consensus 593 ------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFt------tsK~vgLGlGLSIsqSlme 642 (673)
T COG4192 593 ------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFT------TSKEVGLGLGLSISQSLME 642 (673)
T ss_pred ------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcc------cccccccccchhHHHHHHH
Confidence 1233458899999999999999999999995 3345699999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEec
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
.|.|++.+.|...+|.++.+.|..
T Consensus 643 qmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 643 QMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred HhcCcchHhhhcccCcEEEEEEee
Confidence 999999999999999998777754
No 44
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=5.4e-21 Score=207.36 Aligned_cols=121 Identities=33% Similarity=0.511 Sum_probs=112.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..+...|+..||+|..+.+|++|++.+.. . ||+||+|++||+|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~-~dlviLD~~lP~~ 56 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-----------------------Q-PDLVLLDLMLPDL 56 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------C-CCEEEEECCCCCC
Confidence 479999999999999999999999999999999999999853 4 9999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
||+++|++||+. .. ..+|||+|||..+.+++..++++||||||+|||++++|.++|+.++++...
T Consensus 57 dG~~~~~~iR~~-~~---~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 57 DGLELCRRLRAK-KG---SGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CHHHHHHHHHhh-cC---CCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999965 22 368999999999999999999999999999999999999999999998753
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-17 Score=191.94 Aligned_cols=194 Identities=25% Similarity=0.396 Sum_probs=141.6
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001222 440 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 519 (1120)
Q Consensus 440 ~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~ 519 (1120)
+-+...+||.++=|+.|.|++++=. -++..+++. +.+..=...++.+.. ++ + ...+.
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~-----yd~a~~~I~---~~~~~qq~~~~~l~~--~i-----~--------~~~lA 391 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE-----YDDALDYIQ---QESEEQQELIDSLSE--KI-----K--------DPVLA 391 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc-----HHHHHHHHH---HHHhhhhhhHHHHHH--hc-----c--------cHHHH
Confidence 4678889999999999999999621 123333333 333333333333321 11 1 13444
Q ss_pred HHHHHHHHHhhcCCcEEEEEeCCCCCc-eEEeCHHHHHHHHHHHHHHHhhccC---C-CcEEEEEeecccCCCCCCCCCC
Q 001222 520 ELVDMFSVQCSNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTS---S-GHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 520 ~v~~~~~~~a~~k~i~l~~~i~~~~p~-~v~gD~~rL~QIL~NLL~NAIKfT~---~-G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
.++-.-..+|+++|+.+.++....+|. .-.-+..-+--|+.|||+||+..+- + ..|.+...
T Consensus 392 g~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~-------------- 457 (537)
T COG3290 392 GFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS-------------- 457 (537)
T ss_pred HHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE--------------
Confidence 455555678999999999987766543 2346889999999999999999875 2 33444321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
+....+.++|.|||||||++.+++||+.=|.. +..+|.|.||++||++|
T Consensus 458 --------------------------~~~~~lvieV~D~G~GI~~~~~~~iFe~G~St-----k~~~~rGiGL~Lvkq~V 506 (537)
T COG3290 458 --------------------------DRGDELVIEVADTGPGIPPEVRDKIFEKGVST-----KNTGGRGIGLYLVKQLV 506 (537)
T ss_pred --------------------------ecCCEEEEEEeCCCCCCChHHHHHHHhcCccc-----cCCCCCchhHHHHHHHH
Confidence 22345889999999999999999999976632 23478999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+.+||.|+++|+.+.||+|++++|...
T Consensus 507 ~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 507 ERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred HHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999764
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.80 E-value=3.5e-18 Score=198.79 Aligned_cols=186 Identities=13% Similarity=0.205 Sum_probs=139.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 516 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~ 516 (1120)
.+.+|++.++||+||||+.|.|+++++... .+...++..|...+.+|.++++++|+.++ ..++++.+
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~----~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~ 235 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGRA----DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEE 235 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHH
Confidence 345789999999999999999999987522 12334567788899999999999987654 35789999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeC-HHHHHHHHHHHHHHHhhc---cC-CCcEEEEEeecccCCCCCCC
Q 001222 517 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD-PGRVFQIFSNLINNSIKF---TS-SGHIIIRGWCENLDTSKNTA 591 (1120)
Q Consensus 517 li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLL~NAIKf---T~-~G~v~v~~~~~~~~~~~~~~ 591 (1120)
++++++..+... +..+.++.+ .+ .+..+ ...|.|||.||+.||+|| ++ .|.|.|.+...
T Consensus 236 ~~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~--------- 299 (361)
T PRK13559 236 LIRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS--------- 299 (361)
T ss_pred HHHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec---------
Confidence 999998876432 444544432 21 22222 246999999999999999 43 46777654111
Q ss_pred CCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001222 592 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 671 (1120)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 671 (1120)
.....+.+.|.|+|.|++++ ..|+|+||.||+
T Consensus 300 -----------------------------~~~~~~~i~v~d~G~~~~~~-------------------~~~~g~Gl~i~~ 331 (361)
T PRK13559 300 -----------------------------PEGAGFRIDWQEQGGPTPPK-------------------LAKRGFGTVIIG 331 (361)
T ss_pred -----------------------------CCCCeEEEEEECCCCCCCCC-------------------CCCCCcHHHHHH
Confidence 11124789999999997653 237899999999
Q ss_pred HHHHH-cCCEEEEEEeCCCceEEEEEEecC
Q 001222 672 TLVNK-MGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 672 ~LVe~-mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
++|+. |||+|++++. +.||+|+++||+.
T Consensus 332 ~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 332 AMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred HHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 99987 9999999987 6799999999964
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.79 E-value=7.9e-19 Score=169.08 Aligned_cols=110 Identities=35% Similarity=0.574 Sum_probs=97.0
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEE
Q 001222 550 GDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 628 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 628 (1120)
||+.+|++||.||+.||++|+++ |.|.|.+... ...+.|
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~----------------------------------------~~~~~i 40 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEED----------------------------------------DDHLSI 40 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEE----------------------------------------TTEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEe----------------------------------------cCeEEE
Confidence 79999999999999999999987 7777765321 124789
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 629 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 629 ~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+|.|+|.|||++.++++|++|++.+. .....+|+||||++|+.++++|+|++++.+.+++||+|+|.+|+.
T Consensus 41 ~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~~ 111 (111)
T PF02518_consen 41 EISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPLE 111 (111)
T ss_dssp EEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEGS
T ss_pred EEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECc
Confidence 99999999999999999999998876 334457899999999999999999999999999999999999973
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.76 E-value=8.1e-17 Score=198.63 Aligned_cols=194 Identities=22% Similarity=0.290 Sum_probs=141.3
Q ss_pred HHHHhHhhhhhHHHHHHHHHHH----HhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 441 FLANMSHELRTPMAAIIGLLEI----LKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 441 Fla~~SHELRTPL~~I~g~~el----L~~~-~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
..+.++||+++|++.+..++.. +... ....++..+.+..+.....++...+.+++...+ +...++++.
T Consensus 363 ~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~ 435 (565)
T PRK10935 363 ERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLG 435 (565)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHH
Confidence 3456999999999888777653 3322 122344556667777777778888888876544 334578999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCc
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 595 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~ 595 (1120)
+.+++++..+... .++.+.++.+........+++.++.|++.||+.||+||++.|.+.+.....
T Consensus 436 ~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------- 499 (565)
T PRK10935 436 SALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------- 499 (565)
T ss_pred HHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-------------
Confidence 9999999887754 233444333211111223455679999999999999999988887765321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 596 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
....++++|.|+|+|||++. ..|+||||+||+++++
T Consensus 500 --------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~~~glGL~i~~~iv~ 535 (565)
T PRK10935 500 --------------------------PDGEHTVSIRDDGIGIGELK------------------EPEGHYGLNIMQERAE 535 (565)
T ss_pred --------------------------CCCEEEEEEEECCcCcCCCC------------------CCCCCcCHHHHHHHHH
Confidence 11247899999999998732 2378999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
.|||+|+++|.+|+||+|++.||...
T Consensus 536 ~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 536 RLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred HcCCEEEEEECCCCcEEEEEEECCCC
Confidence 99999999999999999999999864
No 49
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.72 E-value=2.8e-16 Score=181.59 Aligned_cols=123 Identities=29% Similarity=0.460 Sum_probs=115.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||+|||+..++..++++|...||.+..+.+|++|+..+.+ .+||+||.|+.||+
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-----------------------~~~dlil~d~~mp~ 188 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-----------------------LPPDLVLLDANMPD 188 (435)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-----------------------CCCcEEEEecCCCc
Confidence 5799999999999999999999999999999999999999864 38999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
|||||+|+++|+.... ..+|||++|+..+.....+++++|++||++||++..+|..++++.+++..
T Consensus 189 ~dg~el~~~lr~~~~t---~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 189 MDGLELCTRLRQLERT---RDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred cCHHHHHHHHhccccc---ccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 9999999999998664 57999999999999999999999999999999999999999999887764
No 50
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=2.7e-17 Score=181.73 Aligned_cols=121 Identities=31% Similarity=0.512 Sum_probs=111.1
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
..++||+|||.+.++..+..+|+..||.+..|.+|++|+++... +++|+||+|++||
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-----------------------~~~dlvllD~~mp 69 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-----------------------EPPDLVLLDVRMP 69 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-----------------------cCCceEEeeccCC
Confidence 35799999999999999999999999999999999999998753 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
.|||+|+|.+|+...+. ..++||+++||.++.++..+|+++|+++||.||+++.+|..++...+
T Consensus 70 ~mdg~ev~~~lk~~~p~--t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 70 EMDGAEVLNKLKAMSPS--TRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred CccHHHHHHHHHhcCCc--ccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999985443 46899999999999999999999999999999999999999996655
No 51
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.70 E-value=7.6e-17 Score=187.01 Aligned_cols=118 Identities=23% Similarity=0.474 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHH--hcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 965 LRILLAEDTPLIQIVACKILE--KVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~--~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.+||||||++..|+.|+.++. +.|++|+ .|.||+||++.++. .+||+||+|+.|
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-----------------------~~pDiviTDI~M 58 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-----------------------TQPDIVITDINM 58 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-----------------------cCCCEEEEecCC
Confidence 479999999999999999984 6788755 79999999999975 489999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+|||+++++.+|+.. +.+.+|+|||+.+-+...+|++.|++|||.||++.++|.+++.++...
T Consensus 59 P~mdGLdLI~~ike~~-----p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 59 PGMDGLDLIKAIKEQS-----PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred CCCcHHHHHHHHHHhC-----CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 9999999999999854 357899999999999999999999999999999999999999888754
No 52
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.70 E-value=1.9e-15 Score=186.87 Aligned_cols=184 Identities=20% Similarity=0.283 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHH
Q 001222 450 RTPMAAIIGLLEILKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 528 (1120)
Q Consensus 450 RTPL~~I~g~~elL~~~-~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~~v~~~~~~~ 528 (1120)
..+|+.+...+..+... ...+++..+.+..|.....++...+.+++...+.+ ..+.++.+.+++++..+...
T Consensus 374 ~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~~ 446 (569)
T PRK10600 374 AQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSAR 446 (569)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHHH
Confidence 33456665555544322 33456677888899999999999999999877642 34578889999998887655
Q ss_pred hhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhh
Q 001222 529 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 608 (1120)
Q Consensus 529 a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (1120)
. ++.+.++...........++..+.||+.|+++||+||++.+.|.|.+...
T Consensus 447 ~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~-------------------------- 497 (569)
T PRK10600 447 F---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN-------------------------- 497 (569)
T ss_pred h---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc--------------------------
Confidence 4 33444433221111112245569999999999999999888777764311
Q ss_pred hhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001222 609 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 688 (1120)
Q Consensus 609 ~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g 688 (1120)
...+.++|.|+|+|||++. ..|+|+||+||+++++.|||+|.+.|.+|
T Consensus 498 --------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 498 --------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred --------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHHHHcCCEEEEEECCC
Confidence 1247899999999999853 12679999999999999999999999999
Q ss_pred CceEEEEEEecCC
Q 001222 689 PGTLMQLYLLLGA 701 (1120)
Q Consensus 689 ~GT~f~~~lpl~~ 701 (1120)
+||+|+++||...
T Consensus 546 ~Gt~v~i~lp~~~ 558 (569)
T PRK10600 546 GGTEVVVTFIPEK 558 (569)
T ss_pred CCEEEEEEEecCC
Confidence 9999999998753
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=3e-16 Score=150.37 Aligned_cols=111 Identities=32% Similarity=0.553 Sum_probs=104.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 967 ILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
||||||++..+..++..|+..|+ .|..+.++.+|++.+.. ..||+||+|+.||.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~iiid~~~~~~~ 57 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-----------------------HPPDLIIIDLELPDGD 57 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-----------------------STESEEEEESSSSSSB
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-----------------------cCceEEEEEeeecccc
Confidence 79999999999999999999999 99999999999999975 3799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1105 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1105 (1120)
|.++++.||+.. +.+|||++|++.+.....+++++|+++||.||++.++|.++|+
T Consensus 58 ~~~~~~~i~~~~-----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 58 GLELLEQIRQIN-----PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHHHHHHT-----TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cccccccccccc-----ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999864 3699999999999999999999999999999999999999874
No 54
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.69 E-value=2.5e-16 Score=183.28 Aligned_cols=118 Identities=32% Similarity=0.536 Sum_probs=111.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..|..+...|+..||.|..+.|+.+|++++.. ..||+|++|+.||+|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-----------------------~~~~lvl~Di~mp~~ 61 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-----------------------SPFDLVLLDIRMPGM 61 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCCCC
Confidence 479999999999999999999999999999999999999964 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
||++++++|++.. +++|||++|+|.+.+...+|++.||-|||.|||+++.|...|.+.++.
T Consensus 62 ~Gl~ll~~i~~~~-----~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 62 DGLELLKEIKSRD-----PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred chHHHHHHHHhhC-----CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 9999999999864 469999999999999999999999999999999999999999999875
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-15 Score=150.47 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=106.0
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL-QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~-eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.+.+||+|||++.++..+..+|+..|+.+..+.+|. +|++.++.. ..||+|++|++|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~----------------------~~~dlii~D~~m 61 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLREL----------------------PQPDLILLDINM 61 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhC----------------------CCCCEEEEeCCC
Confidence 357999999999999999999999999999999996 999999641 149999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER-MVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~-L~~~I~~l~~~ 1110 (1120)
|.|||+++++++|+. ...+|||++|++.......+++++|+++|+.||+...+ |..++.+.+..
T Consensus 62 p~~~G~~~~~~l~~~-----~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 62 PGMDGIELLRRLRAR-----GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CCCCHHHHHHHHHhC-----CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 999999999999986 23588999999999988888899999999999977666 78877766543
No 56
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.63 E-value=3e-15 Score=151.45 Aligned_cols=120 Identities=19% Similarity=0.295 Sum_probs=109.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..-|.||||+...|+.+..+|+..||+|....++++-++... ...|-++|+|+.||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-----------------------~~~pGclllDvrMPg 60 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-----------------------LDRPGCLLLDVRMPG 60 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-----------------------CCCCCeEEEecCCCC
Confidence 347999999999999999999999999999999999888742 347899999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+|.|+-+++++.. ...|||++|+|.+..-..+++++||-|||.|||+.+.|+++|.+.+...
T Consensus 61 ~sGlelq~~L~~~~-----~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 61 MSGLELQDRLAERG-----IRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred CchHHHHHHHHhcC-----CCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999753 3699999999999999999999999999999999999999999988653
No 57
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=5.5e-15 Score=158.99 Aligned_cols=119 Identities=29% Similarity=0.444 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-CEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..|..++.+|+..+ ++|. .+.||.++++.+.. .+||+|+||+.||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-----------------------~~pdvvl~Dl~mP 57 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-----------------------LKPDVVLLDLSMP 57 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-----------------------cCCCEEEEcCCCC
Confidence 379999999999999999998776 7744 67889999998653 4899999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|||+|+++.||+.. ++++||++|++.+.....+++++|+++|+.|..+.++|.++|+.+....
T Consensus 58 ~~~G~e~~~~l~~~~-----p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 58 GMDGLEALKQLRARG-----PDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred CCChHHHHHHHHHHC-----CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999643 4689999999999999999999999999999999999999999987553
No 58
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.61 E-value=5.5e-15 Score=152.44 Aligned_cols=118 Identities=25% Similarity=0.416 Sum_probs=106.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++...++-+.+++.. ||++ -.|.++++|...+.. ..|||||+|+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-----------------------~~pDLILLDiYmP 57 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-----------------------FKPDLILLDIYMP 57 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-----------------------hCCCEEEEeeccC
Confidence 47999999999999999999875 7775 479999999999975 2689999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+.+|++++..||+.. .++-||++||-++.+...+++..|+-|||.|||..+.|.+++.++.+.
T Consensus 58 d~~Gi~lL~~ir~~~-----~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~ 120 (224)
T COG4565 58 DGNGIELLPELRSQH-----YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQK 120 (224)
T ss_pred CCccHHHHHHHHhcC-----CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHH
Confidence 999999999999753 357799999999999999999999999999999999999999887654
No 59
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.59 E-value=1e-13 Score=170.43 Aligned_cols=145 Identities=19% Similarity=0.367 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHH---HHHHHHHHhhccC-------------CCcEE
Q 001222 513 DLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI---FSNLINNSIKFTS-------------SGHII 576 (1120)
Q Consensus 513 dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QI---L~NLL~NAIKfT~-------------~G~v~ 576 (1120)
.+..+++..-..+...+...+.++.+.+... .+..|+..+.++ |.||+.||++|.- .|.|.
T Consensus 344 p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~ 420 (670)
T PRK10547 344 PMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLI 420 (670)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceE
Confidence 3556666666666666665555555555443 257899999998 6799999999962 35566
Q ss_pred EEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHh-------------
Q 001222 577 IRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE------------- 643 (1120)
Q Consensus 577 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~------------- 643 (1120)
+++.. ....+.|+|.|+|.||+++.+.
T Consensus 421 l~a~~----------------------------------------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ 460 (670)
T PRK10547 421 LSAEH----------------------------------------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSEN 460 (670)
T ss_pred EEEEE----------------------------------------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCcccc
Confidence 55421 1124779999999999997653
Q ss_pred --------hhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 644 --------TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 644 --------~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
.||+|||..... .+..+|+|+||+|||++++.|||+|+++|.+|+||+|++.||+..
T Consensus 461 ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 461 MSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred CCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 699997754322 234579999999999999999999999999999999999999865
No 60
>PLN03029 type-a response regulator protein; Provisional
Probab=99.59 E-value=1.8e-14 Score=156.45 Aligned_cols=136 Identities=24% Similarity=0.392 Sum_probs=108.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhccc--CCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL--QGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++.++..+..+|+..||.|..+.+|.+|++.+...... ++.. ............||+||+|+.|
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d-----~~~p~~~~~~~~~~~~~~~dlVllD~~m 82 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDD-----RSNPDTPSVSPNSHQEVEVNLIITDYCM 82 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhcccc-----ccccccccccccccccccCCEEEEcCCC
Confidence 57999999999999999999999999999999999999988531000 0000 0000111123468999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
|+|+|+++++.||+... ...+|||++|+....++..+|+++|+++||.||++..+|...+..+
T Consensus 83 p~~~G~e~l~~ir~~~~---~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 83 PGMTGYDLLKKIKESSS---LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred CCCCHHHHHHHHHhccc---cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 99999999999997532 2468999999999999999999999999999999999997665543
No 61
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=2.3e-13 Score=162.71 Aligned_cols=119 Identities=25% Similarity=0.400 Sum_probs=105.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||+|||++..+..+..+|.. ++.+..+.++.+|++.+.. .+||+|++|+.||.
T Consensus 155 ~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~-----------------------~~~d~vi~d~~~p~ 210 (457)
T PRK09581 155 DGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE-----------------------TNYDLVIVSANFEN 210 (457)
T ss_pred CceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc-----------------------CCCCEEEecCCCCC
Confidence 46899999999999999999975 4777889999999998743 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|||++++++||+... .+++|||++|++.+.+...+|+++|++|||.||++.++|..+|....+
T Consensus 211 ~~g~~l~~~i~~~~~---~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 211 YDPLRLCSQLRSKER---TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred chHhHHHHHHHhccc---cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 999999999997532 257999999999999999999999999999999999999998876543
No 62
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.56 E-value=5.1e-14 Score=153.27 Aligned_cols=117 Identities=24% Similarity=0.314 Sum_probs=105.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..+..+|+.. |+. |..+.++.+|++.+.. ..||+||+|+.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-----------------------~~pdlvllD~~m 60 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----------------------FKPGLILLDNYL 60 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 479999999999999999999864 785 6789999999998864 379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
|+++|+++++.||+.. .++|||++|++.+.+...+++++|+++|+.||++.++|..+|+++.
T Consensus 61 p~~~gle~~~~l~~~~-----~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 61 PDGRGINLLHELVQAH-----YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred CCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 9999999999999742 2478999999999999999999999999999999999999998764
No 63
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.55 E-value=9.2e-14 Score=149.91 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-----------------------~~~dlvild~~l~~~ 57 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-----------------------HLPDIAIVDLGLPDE 57 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 479999999999999999999999999999999999998753 379999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.+|+.. .++|||++|+..+.+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~l~~~lr~~~-----~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 58 DGLSLIRRWRSND-----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 3689999999999999999999999999999999999999999988764
No 64
>PRK11173 two-component response regulator; Provisional
Probab=99.54 E-value=1e-13 Score=151.30 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||++||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 60 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------------------NDINLVIMDINLPGK 60 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEcCCCCCC
Confidence 589999999999999999999999999999999999998853 379999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+. ..+|||++|++.+......++++|+++|+.||++.++|..++..++++.
T Consensus 61 ~g~~~~~~lr~~------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 61 NGLLLARELREQ------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CHHHHHHHHhcC------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999963 2589999999999999999999999999999999999999999988764
No 65
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.54 E-value=1.3e-13 Score=148.92 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 58 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------------------RKPDLIILDLGLPDG 58 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999987743 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+. ..+|||++|++.+.+...+++++|+++|+.||++.++|..++..++++.
T Consensus 59 ~g~~~~~~lr~~------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 59 DGIEFIRDLRQW------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999963 2589999999999999999999999999999999999999999988764
No 66
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.53 E-value=1.6e-13 Score=148.50 Aligned_cols=119 Identities=24% Similarity=0.439 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||++||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~~~~~ 57 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-----------------------GDYDLIILDIMLPDV 57 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 479999999999999999999999999999999999987743 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.+|+.. +.+|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~~~~~lr~~~-----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 58 NGWDIVRMLRSAN-----KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 3589999999999999999999999999999999999999999988753
No 67
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.53 E-value=2.5e-14 Score=152.60 Aligned_cols=117 Identities=32% Similarity=0.533 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++|+||||+...-..+..+|++.|..+..|....+|++.+.. ..|||||+|+.||.|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-----------------------~kpDLifldI~mp~~ 57 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-----------------------FKPDLIFLDIVMPYM 57 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-----------------------cCCCEEEEEeecCCc
Confidence 479999999999999999999999999999999999999975 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+|+++++|...+ .+|||++|+|+.-.+ .+++.-.+|||.||++.+.|..+|.+..++.
T Consensus 58 ngiefaeQvr~i~~-----~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 58 NGIEFAEQVRDIES-----AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred cHHHHHHHHHHhhc-----cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 99999999998764 599999999976543 4455556999999999999999999999775
No 68
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.51 E-value=3.6e-13 Score=144.43 Aligned_cols=119 Identities=25% Similarity=0.399 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||+|||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~illd~~~~~~ 57 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-----------------------GHYSLVVLDLGLPDE 57 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEECCCCCC
Confidence 479999999999999999999999999999999999998753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.+|+.. ..+|||++|++.+.+...+++++|+++|+.||++.++|..++..+.++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 58 DGLHLLRRWRQKK-----YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999742 3589999999999999999999999999999999999999999888654
No 69
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.51 E-value=2.8e-13 Score=145.80 Aligned_cols=118 Identities=28% Similarity=0.434 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 59 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-----------------------QHVDLILLDINLPGE 59 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999988753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+. ..+|||++|+..+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~lr~~------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 60 DGLMLTRELRSR------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CHHHHHHHHHhC------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999963 2589999999999999999999999999999999999999999888663
No 70
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.51 E-value=3.6e-13 Score=147.03 Aligned_cols=120 Identities=24% Similarity=0.425 Sum_probs=110.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+|||+||++..+..+...|+..|+++..+.++.++++.+.. ..||+|++|+.||.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~ 61 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-----------------------ESFHLMVLDLMLPG 61 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999988753 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|+++++.||+.. .++|||++|+..+.+....++++|+++|+.||++.++|..++..++++.
T Consensus 62 ~~g~~~~~~lr~~~-----~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 62 EDGLSICRRLRSQN-----NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999742 3589999999999999999999999999999999999999999988764
No 71
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.50 E-value=4.7e-13 Score=145.03 Aligned_cols=121 Identities=32% Similarity=0.509 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||+|||++..+..+...|+..|+++..+.++.+|++.+.. ..||+||+|+.||.+
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 59 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-----------------------PWPDLILLDWMLPGG 59 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+... .+.+|||++|++.+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~l~~~~~---~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 60 SGIQFIKHLKRESM---TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred CHHHHHHHHHhccc---cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999997432 24689999999999999999999999999999999999999999988763
No 72
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.49 E-value=6.5e-13 Score=142.74 Aligned_cols=121 Identities=33% Similarity=0.516 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+|||+||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~vi~d~~~~~~ 59 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-----------------------RGPDLILLDWMLPGT 59 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-----------------------cCCCEEEEECCCCCC
Confidence 589999999999999999999999999999999999998753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+... .+.+|||++|++.+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 60 SGIELCRRLRRRPE---TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred cHHHHHHHHHcccc---CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999997532 13589999999999999999999999999999999999999999988764
No 73
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.49 E-value=5.1e-13 Score=146.49 Aligned_cols=117 Identities=19% Similarity=0.353 Sum_probs=105.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||+|||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~l~~~~ 59 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-----------------------ETVDVVVVDLNLGRED 59 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999988753 3799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHA-MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++++.||+. .++|||++|+.. ......+++++|+++|+.||++.++|..+++.++++.
T Consensus 60 g~~l~~~i~~~------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 60 GLEIVRSLATK------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred HHHHHHHHHhc------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999863 258999999854 6677789999999999999999999999999888764
No 74
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.49 E-value=5.6e-13 Score=145.71 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=107.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.++
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-----------------------~~~dlvild~~l~~~~ 59 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-----------------------EQPDLVLLDIMLPGKD 59 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999998853 3799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++++.||+. ..+|||++|+........+++++|+++|+.||++.++|..++..++++.
T Consensus 60 g~~~~~~ir~~------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 60 GMTICRDLRPK------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred HHHHHHHHHhc------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999973 2479999999999988999999999999999999999999999888764
No 75
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.49 E-value=5.1e-13 Score=146.75 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=102.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-cCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEK-VGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~-~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..+..+..+|+. .|+.+ ..+.++.+|++.+... ...||+||+|+.||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~---------------------~~~~DlvilD~~~p 60 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS---------------------DTPIDLILLDIYMQ 60 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc---------------------CCCCCEEEEecCCC
Confidence 4799999999999999999986 47764 4789999999887420 23699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
+|||+++++.||+.. +.+|||++|++.+.+...+++++|+++|+.||++.++|..+|.++
T Consensus 61 ~~~G~eli~~l~~~~-----~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 61 QENGLDLLPVLHEAG-----CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCcHHHHHHHHhhC-----CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999999753 358999999999999999999999999999999999999999764
No 76
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.48 E-value=6.5e-13 Score=142.34 Aligned_cols=119 Identities=31% Similarity=0.433 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++|||+||++..+..+..+|+..|+.+..+.++.+++..+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 57 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-----------------------APYDAVILDLTLPGM 57 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 479999999999999999999999999999999999987753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+.. +.+|||++|++.+.+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~~~~~i~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 58 DGRDILREWREKG-----QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 3589999999999999999999999999999999999999999887653
No 77
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.48 E-value=6e-13 Score=144.06 Aligned_cols=116 Identities=32% Similarity=0.541 Sum_probs=106.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ..||+||+|+.||.++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~------------------------~~~d~vl~d~~~~~~~ 58 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD------------------------DSIDLLLLDVMMPKKN 58 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh------------------------cCCCEEEEeCCCCCCc
Confidence 7999999999999999999999999999999999998763 2599999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++++.||+.. .+|||++|+..+.....+++++|+++|+.||++.++|..++..++++.
T Consensus 59 g~~~~~~l~~~~------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 59 GIDTLKELRQTH------QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred HHHHHHHHHhcC------CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 999999999642 289999999999888999999999999999999999999999988653
No 78
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.48 E-value=5.4e-13 Score=158.66 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=92.6
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCCCc----EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCc
Q 001222 548 VRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 623 (1120)
Q Consensus 548 v~gD~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1120)
+.++...|.|++.|||+||++|++.++ |.|.+... ..+.
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~-------------------------------------~~~~ 72 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRV-------------------------------------DEGK 72 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc-------------------------------------cCCC
Confidence 456678899999999999999997653 44433210 0122
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC--CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEec
Q 001222 624 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT--RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLL 699 (1120)
Q Consensus 624 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~--~~~~GtGLGLaIvk~LVe~mGG~-I~v~S~~g~GT-~f~~~lpl 699 (1120)
..+.|+|.|+|+||++++++++|++|+.++.... +..+|+||||++|+.++++|+|. |+|.|..+.|+ .|+|.|++
T Consensus 73 ~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~i 152 (535)
T PRK04184 73 DHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKI 152 (535)
T ss_pred cEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEe
Confidence 3477999999999999999999999977654322 33478999999999999999997 99999999998 89999987
Q ss_pred CC
Q 001222 700 GA 701 (1120)
Q Consensus 700 ~~ 701 (1120)
..
T Consensus 153 d~ 154 (535)
T PRK04184 153 DT 154 (535)
T ss_pred cc
Confidence 64
No 79
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.48 E-value=6.3e-13 Score=147.93 Aligned_cols=121 Identities=22% Similarity=0.379 Sum_probs=106.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..+..+|+.. ++.+. .+.+|.+|++.+.. ..||+|++|+.|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-----------------------~~~DlvllD~~m 58 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-----------------------QQPDVVVLDIIM 58 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 368999999999999999999864 45544 79999999998864 379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|.|||+++++.||+.... ..+|||++|+........+++++|+++|+.||++.++|..+|.++...
T Consensus 59 p~~dG~~~l~~i~~~~~~---~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 59 PHLDGIGVLEKLNEIELS---ARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCCCHHHHHHHHHhhccc---cCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999975332 248999999999999999999999999999999999999999988754
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.47 E-value=9.2e-13 Score=141.72 Aligned_cols=118 Identities=26% Similarity=0.459 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||+|||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~dlvi~d~~~~~~ 57 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-----------------------DDYALIILDIMLPGM 57 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEECCCCCC
Confidence 479999999999999999999999999999999999988753 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+. ..+|||++|+..+.+...+++++|+++|+.||++.++|..+|..++++.
T Consensus 58 ~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 58 DGWQILQTLRTA------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999963 2489999999999999999999999999999999999999999888654
No 81
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.46 E-value=1.1e-12 Score=141.72 Aligned_cols=118 Identities=26% Similarity=0.383 Sum_probs=107.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC--
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-- 1043 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~-- 1043 (1120)
+||++||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~~ 58 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-----------------------RLPDLAIIDIGLGEEI 58 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-----------------------CCCCEEEEECCCCCCC
Confidence 69999999999999999999999999999999999998753 36999999999998
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|+++++.||+.. +++|||++|++...+....++++|+++|+.||++.++|..+|+.++++.
T Consensus 59 ~~g~~~~~~i~~~~-----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 59 DGGFMLCQDLRSLS-----ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 58999999999742 3589999999999999999999999999999999999999999988764
No 82
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.44 E-value=1.9e-12 Score=139.49 Aligned_cols=119 Identities=25% Similarity=0.435 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~ 60 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-----------------------QPPDLVILDVGLPDI 60 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999987743 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+.. +.+|||++|++........++++|+++|+.||++.++|..+|..++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 61 SGFELCRQLLAFH-----PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred CHHHHHHHHHhhC-----CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 9999999999743 3589999999999888899999999999999999999999999887764
No 83
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.43 E-value=2.8e-12 Score=137.13 Aligned_cols=117 Identities=27% Similarity=0.463 Sum_probs=107.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1046 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG 1046 (1120)
||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++|
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~~g 57 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-----------------------DDYDLIILDVMLPGMDG 57 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCH
Confidence 5899999999999999999999999999999999998753 47999999999999999
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+++++.||+.. +++|||++|+..+.....+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~~~~~~l~~~~-----~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 58 WQILQTLRRSG-----KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred HHHHHHHHccC-----CCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999642 3589999999999999999999999999999999999999999887654
No 84
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.42 E-value=2.7e-12 Score=138.68 Aligned_cols=119 Identities=19% Similarity=0.285 Sum_probs=105.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-E-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA-T-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~-~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+++||||||++..+..++.+|+..++ . +..+.++.++++.+.. ..||+||+|+.|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~DlvllD~~l 59 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-----------------------LDAHVLITDLSM 59 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCcC
Confidence 46899999999999999999987665 3 6678999999998753 369999999999
Q ss_pred CC---CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PK---MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~---mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+ ++|++++++||+.. +++|||++|++.+.....+++++|+++|+.||.+.++|..+|+.+...
T Consensus 60 ~~~~~~~g~~~~~~l~~~~-----~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 60 PGDKYGDGITLIKYIKRHF-----PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CCCCCCCHHHHHHHHHHHC-----CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 99 59999999999742 358999999999999999999999999999999999999999887654
No 85
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.42 E-value=3.3e-12 Score=138.98 Aligned_cols=119 Identities=29% Similarity=0.510 Sum_probs=108.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||++||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~d~illd~~~~~ 62 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-----------------------EQPDLVILDVMMPK 62 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999987753 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|+++++.+|+. .++|||++|++.......+++++|+++|+.||++.++|..++..++++.
T Consensus 63 ~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 63 LDGYGVCQEIRKE------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred CCHHHHHHHHHhc------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999963 2589999999999988899999999999999999999999998887653
No 86
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.41 E-value=3.8e-12 Score=135.10 Aligned_cols=118 Identities=19% Similarity=0.352 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
++||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~ 57 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-----------------------LKPDIVIIDVDIPG 57 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-----------------------cCCCEEEEeCCCCC
Confidence 4799999999999999999999999987 69999999998753 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|+++++.+|+.. +.+|||++|++........++++|+++|+.||++.++|..+|..+.+.
T Consensus 58 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 58 VNGIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred CCHHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 99999999999743 247899999999999999999999999999999999999999988764
No 87
>PRK14084 two-component response regulator; Provisional
Probab=99.40 E-value=4.4e-12 Score=139.56 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=100.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-C-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-A-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++|||+||++..+..+..+|+..+ + .+..+.++++|++.+.. ..||+||+|+.||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~dlv~lDi~m~ 57 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-----------------------NQYDIIFLDINLM 57 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 479999999999999999999866 4 57789999999998853 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|+|+++++.||+.. ...|||++|++.. ...+++++|+++||.||++.++|..++.++.+.
T Consensus 58 ~~~G~~~~~~i~~~~-----~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 58 DESGIELAAKIQKMK-----EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred CCCHHHHHHHHHhcC-----CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999753 2468999998753 466899999999999999999999999988754
No 88
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.40 E-value=4.5e-12 Score=119.45 Aligned_cols=109 Identities=44% Similarity=0.656 Sum_probs=92.3
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEE
Q 001222 550 GDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 628 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 628 (1120)
+|+.+|.+++.|++.||+++... +.+.|.++.. ...+.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~----------------------------------------~~~~~i 40 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD----------------------------------------GDHLEI 40 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------CCEEEE
Confidence 57889999999999999999986 6666655321 124789
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001222 629 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 629 ~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
.|.|+|.|++++.++++|.+++.... ......+.|+||++|+++++.|+|++.+.+..+.|++|+|.+|+
T Consensus 41 ~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 41 TVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred EEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 99999999999999999999987653 22335679999999999999999999999988999999999986
No 89
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.38 E-value=3.4e-12 Score=124.10 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=106.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
..|||||+..+...|.+.|++.||.|..|.+.+||+.+++. .+|...+.|+.|-+.+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-----------------------~~PayAvvDlkL~~gs 67 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-----------------------APPAYAVVDLKLGDGS 67 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-----------------------CCCceEEEEeeecCCC
Confidence 68999999999999999999999999999999999999974 4799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
|+++++.||+... +..||+||++++......+.+.|+++||.||-+.+++..++.+-
T Consensus 68 GL~~i~~lr~~~~-----d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 68 GLAVIEALRERRA-----DMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred chHHHHHHHhcCC-----cceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 9999999998643 57899999999999999999999999999999999999887664
No 90
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.37 E-value=6.1e-12 Score=152.11 Aligned_cols=117 Identities=26% Similarity=0.396 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..+..+|+..|+.|..+.++.+|+..+.. ..||+||+|+.||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-----------------------~~~DlvllD~~lp~~ 60 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-----------------------KTPDVLLSDIRMPGM 60 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEECCCCCCC
Confidence 489999999999999999999999999999999999998853 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||+++++.||+.. +.+|||++|++...+....++++|+++|+.||++.++|...|.+++.
T Consensus 61 dgl~~l~~ir~~~-----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 61 DGLALLKQIKQRH-----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred CHHHHHHHHHhhC-----CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 9999999999743 35899999999999999999999999999999999999999987764
No 91
>PRK15115 response regulator GlrR; Provisional
Probab=99.37 E-value=5.1e-12 Score=151.64 Aligned_cols=119 Identities=29% Similarity=0.461 Sum_probs=109.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-----------------------~~~dlvilD~~lp~ 61 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-----------------------EKVDLVISDLRMDE 61 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCC
Confidence 3689999999999999999999999999999999999998853 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+|+++++.+++.. +.+|||++|++.+.+...+++++|+++|+.||++.++|..+|.+++..
T Consensus 62 ~~g~~ll~~l~~~~-----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 62 MDGMQLFAEIQKVQ-----PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred CCHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999642 468999999999999999999999999999999999999999988764
No 92
>PRK09483 response regulator; Provisional
Probab=99.37 E-value=1.1e-11 Score=132.76 Aligned_cols=118 Identities=31% Similarity=0.446 Sum_probs=106.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++|||+||++..+..+..+|+.. |+.+. .+.++.++++.+.. .+||+||+|+.||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~ 58 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-----------------------NAVDVVLMDMNMP 58 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 47999999999999999999874 88876 78999999988753 3799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|+++++.||+.. +.+|||++|.+.......+++..|+++|+.||++.++|..+|.++...
T Consensus 59 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 59 GIGGLEATRKILRYT-----PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred CCCHHHHHHHHHHHC-----CCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999998743 358999999999999999999999999999999999999999988765
No 93
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=6.8e-12 Score=145.08 Aligned_cols=117 Identities=31% Similarity=0.420 Sum_probs=100.2
Q ss_pred cEEEEEeCCHHHHHHHHHHH-HhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKIL-EKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L-~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..+..+..+| +..|+++. .+.++.+|++.+.+ ..||+|+||+.||
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-----------------------~~pDlVllD~~mp 57 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-----------------------QPPDVILMDLEMP 57 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-----------------------cCCCEEEEcCCCC
Confidence 47999999999999999999 46688876 78999999998853 3799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCC--HHHHHHHHHcCCCEEEECCC---------CHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPI---------DSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi---------~~~~L~~~I~~l~~~ 1110 (1120)
+|+|++++++|++. .++|||++|+... .....+|+++|+++|+.||+ ..++|..+|+.+.+.
T Consensus 58 ~~~G~e~l~~l~~~------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~ 130 (337)
T PRK12555 58 RMDGVEATRRIMAE------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRL 130 (337)
T ss_pred CCCHHHHHHHHHHH------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhc
Confidence 99999999999873 2489999998754 45667899999999999999 667888888777643
No 94
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.35 E-value=5.1e-12 Score=151.44 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=108.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~DlvilD~~m~~ 61 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-----------------------QVFDLVLCDVRMAE 61 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 4799999999999999999999999999999999999998753 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|+|+++++.||+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|.++++
T Consensus 62 ~~G~~~~~~ir~~~-----~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 62 MDGIATLKEIKALN-----PAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CCHHHHHHHHHhhC-----CCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999753 36899999999999999999999999999999999999999987764
No 95
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.35 E-value=1.3e-11 Score=130.09 Aligned_cols=115 Identities=17% Similarity=0.337 Sum_probs=102.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..+..+..+|+.. ++. +..+.++.++++.+.. ..||+|++|+.||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~dlvi~d~~~~ 58 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-----------------------RGVQVCICDISMP 58 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCC
Confidence 47999999999999999999754 565 5688999999998853 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|+++++.++. .+|||++|++...+....|+++|+++|+.||++.++|..+|.++.++
T Consensus 59 ~~~g~~~~~~l~~--------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 59 DISGLELLSQLPK--------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCCHHHHHHHHcc--------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 9999999998862 37899999999999999999999999999999999999999998865
No 96
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.35 E-value=1.9e-11 Score=129.97 Aligned_cols=120 Identities=17% Similarity=0.325 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+|||+||++..+..+...|+.. ++.+. .+.++.++++.+.. ..||+|++|+.|
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l 59 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-----------------------RPVDLIIMDIDL 59 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 358999999999999999999876 57775 68899999988753 379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|.++|.++++.+|+.. +.+|||++|++.......+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 60 PGTDGFTFLKRIKQIQ-----STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred CCCCHHHHHHHHHHhC-----CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999742 3589999999999889999999999999999999999999998887654
No 97
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.34 E-value=1.1e-11 Score=149.35 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=108.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlillD~~~p~ 60 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-----------------------IHPDVVLMDIRMPE 60 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999998853 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|+|+++++.||+.. +.+|||++|++.+.+...+++++|+++|+.||++.++|...|.+++.
T Consensus 61 ~~g~~ll~~i~~~~-----~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 61 MDGIKALKEMRSHE-----TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 99999999999742 36899999999999999999999999999999999999999987664
No 98
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.34 E-value=1.2e-11 Score=135.20 Aligned_cols=115 Identities=28% Similarity=0.456 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC-E-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGA-T-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~-~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++|||+||++..+..+..+|+..|. . +..+.++.++++.+.. ..||+||+|+.||
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~dlv~lDi~~~ 58 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-----------------------LKPDVVFLDIQMP 58 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 5899999999999999999998873 3 4568999999988753 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|||+++++.++.. ...+||++|++. +...++++.|+++||.||++.++|..++.++.+.
T Consensus 59 ~~~G~~~~~~l~~~------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 59 RISGLELVGMLDPE------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCCHHHHHHHhccc------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999998632 135789999875 4567899999999999999999999999988754
No 99
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.34 E-value=8.9e-12 Score=149.65 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=103.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC---
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK--- 1043 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~--- 1043 (1120)
||||||++..+..+...| .||+|..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-----------------------~~~dlvllD~~mp~~~~ 55 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-----------------------HEPAVVTLDLGLPPDAD 55 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCcC
Confidence 689999999999999988 79999999999999999864 37999999999996
Q ss_pred --CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1044 --MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1044 --mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|+|++++++|++.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++
T Consensus 56 ~~~~g~~~l~~i~~~~-----~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 56 GASEGLAALQQILAIA-----PDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CCCCHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 99999999998753 36899999999999999999999999999999999999999977654
No 100
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.33 E-value=3.1e-11 Score=129.33 Aligned_cols=119 Identities=35% Similarity=0.509 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~vild~~~~~~ 57 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-----------------------EMYALAVLDINMPGM 57 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999887753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.+|+.. .++|||++|++.+.+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~~~~~~~~i~~~~-----~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 58 DGLEVLQRLRKRG-----QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred cHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999753 3589999999999999999999999999999999999999998877653
No 101
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.33 E-value=3.2e-11 Score=131.30 Aligned_cols=118 Identities=27% Similarity=0.449 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||++||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+|++|+.||.+
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~ 67 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-----------------------TPPDLILLDLMLPGT 67 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 389999999999999999999999999999999999998753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+. ..+|||+++++........++++|+++|+.||++.++|..+|..++++.
T Consensus 68 ~g~~~~~~l~~~------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 68 DGLTLCREIRRF------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred CHHHHHHHHHhc------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 999999999952 2589999999998888899999999999999999999999998887653
No 102
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.32 E-value=1.4e-11 Score=148.69 Aligned_cols=115 Identities=27% Similarity=0.421 Sum_probs=105.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1046 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG 1046 (1120)
||||||++..+..+...|+..|+.|..+.++.+|+..+.. ..||+||+|+.||+|+|
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~DlVllD~~~p~~~g 57 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-----------------------GQPDLLITDVRMPGEDG 57 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCCCH
Confidence 6899999999999999999999999999999999998753 37999999999999999
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+++++.||+.. +.+|||++|++.......+|+++|+++|+.||++.++|..+|.+++.
T Consensus 58 ~~ll~~l~~~~-----~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 58 LDLLPQIKKRH-----PQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred HHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 99999999742 35899999999999999999999999999999999999999988764
No 103
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.29 E-value=1.5e-11 Score=107.71 Aligned_cols=67 Identities=45% Similarity=0.704 Sum_probs=60.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ-YSTVCQIKKSSYALLRLLNRILDLSKVESG 503 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~-~~~l~~I~~s~~~L~~LIndiLdlskiesg 503 (1120)
.|.+|++++||||||||++|.+++++|......++++ ++++..|..++.++..+|+++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3789999999999999999999999998745667777 899999999999999999999999999987
No 104
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.28 E-value=4.9e-11 Score=138.95 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=98.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++.++..+..+|+.. |+.+. .+.++.+|++.+.. ..||+|++|+.|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-----------------------~~~DlVllD~~m 59 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-----------------------LNPDVITLDVEM 59 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-----------------------hCCCEEEEeCCC
Confidence 469999999999999999999876 88877 89999999998753 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCC--HHHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHHhh
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPIDS---------ERMVSTILRLTK 1109 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi~~---------~~L~~~I~~l~~ 1109 (1120)
|.|||++++++||+.. .+|||++|+... .....+++++|+++||.||++. ++|..+++.+.+
T Consensus 60 p~~dgle~l~~i~~~~------~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 60 PVMDGLDALEKIMRLR------PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred CCCChHHHHHHHHHhC------CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999742 289999998643 4566789999999999999953 556666666543
No 105
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.28 E-value=3.9e-11 Score=129.57 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=94.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
..++++|||+|..+..++.+|+. ++. +..+.++.+|++.+ .+||+||||+.||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~-------------------------~~~DvvllDi~~p 63 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDI-------------------------SSGSIILLDMMEA 63 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccC-------------------------CCCCEEEEECCCC
Confidence 35799999999999999999984 454 55788999888864 1499999999999
Q ss_pred CCCHHHHH-HHHHhcccccCCCCcceEEEeccCCHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEAT-IEIRKSESEHGARNIPIVALTAHAMNADEKKCLG--VGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~-~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|++++ +.||+.. ++++||++|++.+. ...++. +|+++|+.|+.+.++|.++|+.+.+.
T Consensus 64 ~~~G~~~~~~~i~~~~-----p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 64 DKKLIHYWQDTLSRKN-----NNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CccHHHHHHHHHHHhC-----CCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 99999997 5678643 35899999998763 334555 59999999999999999999887654
No 106
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.27 E-value=4.6e-11 Score=134.61 Aligned_cols=103 Identities=26% Similarity=0.524 Sum_probs=90.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+|||+|||.+..|.+++.+|...| ..|..+.||.+|++++.+. .||+|.||++||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~-----------------------~PDVi~ld~emp 58 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL-----------------------KPDVITLDVEMP 58 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc-----------------------CCCEEEEecccc
Confidence 589999999999999999999988 5577899999999999763 799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCC--HHHHHHHHHcCCCEEEECCCC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPID 1096 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi~ 1096 (1120)
.|||+|++++|-+. ..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 59 ~mdgl~~l~~im~~------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 59 VMDGLEALRKIMRL------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cccHHHHHHHHhcC------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 99999999998764 3589999987543 455568999999999999984
No 107
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.27 E-value=4.8e-11 Score=125.20 Aligned_cols=119 Identities=20% Similarity=0.377 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~ii~d~~~~~ 59 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-----------------------LRFGCVVTDVRMPG 59 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999887742 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|+++++.||+.. +.+|||++|+....+....++++|+++|+.||++.++|..++..++..
T Consensus 60 ~~~~~~~~~l~~~~-----~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 60 IDGIELLRRLKARG-----SPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred CcHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 99999999999642 368999999999999999999999999999999999999999887765
No 108
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.25 E-value=4e-11 Score=145.03 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=88.5
Q ss_pred hcCCcEEEEEeCCCCCc-eEEeCHHHHHHHHHHHHHHHhhccCCCc----EEEEEeecccCCCCCCCCCCccccccchhh
Q 001222 530 SNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAF 604 (1120)
Q Consensus 530 ~~k~i~l~~~i~~~~p~-~v~gD~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1120)
..+.+.+..-+..+.+. .+..|...|.+++.|||+||++|++.++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 34666766655555432 2334678899999999999999998754 4444311
Q ss_pred hhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCC----CCCCCCCccchHHHHHHHHHHcCCE
Q 001222 605 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNKMGGE 680 (1120)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s----~~~~~~GtGLGLaIvk~LVe~mGG~ 680 (1120)
....+.|.|.|+|+||++++++++|++|++++.. .+++..|.||||++|...+ .+||.
T Consensus 78 -----------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~Ggp 139 (795)
T PRK14868 78 -----------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKP 139 (795)
T ss_pred -----------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCc
Confidence 1224779999999999999999999999866431 2334456777777777666 37899
Q ss_pred EEEEEeCCC-ceE--EEEEEe
Q 001222 681 IKVVKKNSP-GTL--MQLYLL 698 (1120)
Q Consensus 681 I~v~S~~g~-GT~--f~~~lp 698 (1120)
|.|.|..+. +.. |.+.+.
T Consensus 140 I~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 140 AKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred EEEEeCCCCCCceeEEEEEEe
Confidence 999999754 333 444443
No 109
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.24 E-value=1.1e-10 Score=139.84 Aligned_cols=118 Identities=31% Similarity=0.463 Sum_probs=107.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||+++
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~~~ 60 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-----------------------EQPDIILLDVMMPGMD 60 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-----------------------cCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999998853 3699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|+++++.||+... .+.+|||++|+..+.....+++++|+++|+.||++.++|..++.++.+
T Consensus 61 g~~l~~~i~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 61 GFEVCRRLKSDPA---TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred HHHHHHHHHcCcc---cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 9999999997432 236899999999999999999999999999999999999999988754
No 110
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.24 E-value=3.7e-11 Score=141.69 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=84.6
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCCC----cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCc
Q 001222 548 VRGDPGRVFQIFSNLINNSIKFTSSG----HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 623 (1120)
Q Consensus 548 v~gD~~rL~QIL~NLL~NAIKfT~~G----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1120)
+.+|...|.|++.||++||++|+..+ .|.|.+.. .+.
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~---------------------------------------~g~ 62 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEK---------------------------------------IGK 62 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEE---------------------------------------CCC
Confidence 56789999999999999999998753 34443311 111
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCC--CCCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCceEE
Q 001222 624 LALCFEVDDTGCGIDQSKWETVFESFEQGDPST--TRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGTLM 693 (1120)
Q Consensus 624 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~--~~~~~GtGLGLaIvk~LVe~mGG~-I~v~S~~g~GT~f 693 (1120)
..+.|+|.|+|+||++++++++|++|++++... ....|+.|+||++|+.++++|+|+ ++|.|..+ |..|
T Consensus 63 ~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 63 DHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred ceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 235789999999999999999999998876532 223478999999999999999999 99999886 6655
No 111
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.22 E-value=4.1e-10 Score=107.75 Aligned_cols=122 Identities=23% Similarity=0.461 Sum_probs=107.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++||++|+++.....+...|+..|+. +..+.++.+++..+.. ..||++++|..+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~di~l~d~~~~ 61 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-----------------------GGFGFVISDWNMP 61 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-----------------------cCCCEEEEcCCCC
Confidence 468999999999999999999999984 7788999999887743 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
.++|+++++.+++... ...+|+++++.........++++.|+++|+.||++.++|...+.+++++.
T Consensus 62 ~~~~~~~~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 62 NMDGLELLKTIRADGA---MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCCHHHHHHHHHhCCC---cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 9999999999997532 13589999999888888889999999999999999999999999887653
No 112
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.20 E-value=1.2e-10 Score=125.07 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=89.5
Q ss_pred HHHHHHHHHh---cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE---EeCCCCCCCHHHHH
Q 001222 977 QIVACKILEK---VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL---MDCQMPKMDGYEAT 1050 (1120)
Q Consensus 977 ~~~l~~~L~~---~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL---mD~~MP~mdG~e~~ 1050 (1120)
|..+..+|+. .|+.|..+.++.++++.+.. ..||++| +|+.||+|||++++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-----------------------~~pd~vl~dl~d~~mp~~~Gl~~~ 59 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-----------------------ISFSAVIFSLSAMRSERREGLSCL 59 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-----------------------CCCCEEEeeccccCCCCCCHHHHH
Confidence 5667788864 46667899999999998753 3689998 78899999999999
Q ss_pred HHHHhcccccCCCCcceEEEeccCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1051 IEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1051 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++||+.. +.+|||++|++..+....+++ ++|+++||.||.+.++|..+|+.++...
T Consensus 60 ~~l~~~~-----p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 60 TELAIKF-----PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred HHHHHHC-----CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 9999753 468999999987776566655 7999999999999999999999988653
No 113
>PRK13435 response regulator; Provisional
Probab=99.20 E-value=4e-10 Score=113.48 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=99.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++|||+||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dliivd~~~~ 61 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-----------------------RQPDVALVDVHLA 61 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-----------------------cCCCEEEEeeecC
Confidence 46899999999999999999999999987 78999999987743 3699999999998
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
.++|.++.+.+++. ..+|||++++... ...++.+|+++|+.||++.++|.+.|.++..+.
T Consensus 62 ~~~~~~~~~~~l~~~------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 62 DGPTGVEVARRLSAD------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred CCCcHHHHHHHHHhC------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 59999999998753 2589999997543 356888999999999999999999999887643
No 114
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.19 E-value=1.2e-10 Score=147.08 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=103.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++.++..+..+|...||.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-----------------------~~~Dlvl~d~~lp~ 63 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-----------------------GEIDCVVADHEPDG 63 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-----------------------cCCCEEEEeccCCC
Confidence 3689999999999999999999999999999999999998753 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHH--HHHHHHHHHhh
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE--RMVSTILRLTK 1109 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~--~L~~~I~~l~~ 1109 (1120)
|+|++++++||... +.+|||++|++.+.+...+++++|+++|+.||.+.. .+..++...+.
T Consensus 64 ~~g~~~l~~l~~~~-----~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 64 FDGLALLEAVRQTT-----AVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred CcHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 99999999999742 368999999999999999999999999999997643 66666665553
No 115
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.18 E-value=5.4e-10 Score=117.84 Aligned_cols=119 Identities=21% Similarity=0.331 Sum_probs=104.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+||++||++..+..+...|... ++.+ ..+.++.++++.+.. ..||+|++|+.|
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~ 59 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-----------------------LEPDIVILDLGL 59 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 468999999999999999999875 4664 478999999887653 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|.++|+++++.+|+.. +.+|+|++|+.........++++|+++|+.||++.++|..++..+...
T Consensus 60 ~~~~~~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 60 PGMNGLDVIPQLHQRW-----PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred CCCCHHHHHHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 9999999999999743 358999999999999999999999999999999999999999887654
No 116
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.18 E-value=4.7e-10 Score=119.21 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=103.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-cCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEK-VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~-~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+|++|+.||
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~ 63 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-----------------------LDPDVILLDLNMK 63 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCC
Confidence 6899999999999999999975 577775 68999999987753 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
.++|+++++.+++.. .++|++++|.+........++++|+++|+.||++.++|..++..+...
T Consensus 64 ~~~~~~~~~~l~~~~-----~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 64 GMSGLDTLNALRRDG-----VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CCcHHHHHHHHHHhC-----CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 999999999999753 357899999998888889999999999999999999999999876543
No 117
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.18 E-value=1.2e-10 Score=141.21 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=88.6
Q ss_pred EeCHHHH---HHHHHHHHHHHhhccCCC----cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccC
Q 001222 549 RGDPGRV---FQIFSNLINNSIKFTSSG----HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 621 (1120)
Q Consensus 549 ~gD~~rL---~QIL~NLL~NAIKfT~~G----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1120)
.|++..+ .+++.||++||++|+..+ .|.|.+.. .
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~---------------------------------------~ 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEK---------------------------------------L 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEE---------------------------------------C
Confidence 4555554 599999999999998753 35544321 1
Q ss_pred CceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC--CCCCCccchHHHHHHHHHHc-CCEEEEEEeCCCceEEEEEEe
Q 001222 622 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT--RKHGGTGLGLSIVRTLVNKM-GGEIKVVKKNSPGTLMQLYLL 698 (1120)
Q Consensus 622 ~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~--~~~~GtGLGLaIvk~LVe~m-GG~I~v~S~~g~GT~f~~~lp 698 (1120)
+...+.++|.|+|+|||++.++++|++|+.++.-.. ...++.|+||+++..+++++ ||.+.+.|..+.|++|++.+|
T Consensus 69 g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~ 148 (659)
T PRK14867 69 GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIK 148 (659)
T ss_pred CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEE
Confidence 123477999999999999999999999987654211 34568999999999999886 566999999999999999998
Q ss_pred cCC
Q 001222 699 LGA 701 (1120)
Q Consensus 699 l~~ 701 (1120)
+..
T Consensus 149 i~i 151 (659)
T PRK14867 149 MSV 151 (659)
T ss_pred EEe
Confidence 855
No 118
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.17 E-value=5e-10 Score=119.23 Aligned_cols=119 Identities=25% Similarity=0.399 Sum_probs=104.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+||++||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.|
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~l 62 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------------------LDPDLILLDLNM 62 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCC
Confidence 368999999999999999999764 5654 468999999998753 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|.++|+++++.+|+.. ..+|+|++++.........++++|+++|+.||++.++|...|..+.+.
T Consensus 63 ~~~~~~~~~~~l~~~~-----~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 63 PGMNGLETLDKLREKS-----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred CCCcHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 9999999999999753 357999999999999999999999999999999999999999988764
No 119
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.17 E-value=2.2e-10 Score=106.18 Aligned_cols=101 Identities=43% Similarity=0.630 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhccCC--CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEe
Q 001222 555 VFQIFSNLINNSIKFTSS--GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 632 (1120)
Q Consensus 555 L~QIL~NLL~NAIKfT~~--G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~D 632 (1120)
|.+++.+|++||++|... +.+.+.... ....+.|.|.|
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~----------------------------------------~~~~~~v~i~d 40 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVER----------------------------------------DGDHLEIRVED 40 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEe----------------------------------------cCCEEEEEEEe
Confidence 468999999999999874 556554421 11247899999
Q ss_pred CCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001222 633 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 697 (1120)
Q Consensus 633 tG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~l 697 (1120)
+|.|+++..+++.|.+|... .......+.|+||++|+++++.|||++++.+..+.|++|++.+
T Consensus 41 ~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 41 NGPGIPEEDLERIFERFSDG--SRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred CCCCCCHHHHHHHhhhhhcC--CCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 99999999999999987211 1222345899999999999999999999999888899988753
No 120
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.15 E-value=2.5e-10 Score=116.99 Aligned_cols=116 Identities=32% Similarity=0.438 Sum_probs=97.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++||++||++.++..+...|...||.+ .++.++.++.+.... .+||+||||+.||
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-----------------------~~pDvVildie~p 61 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-----------------------LQPDVVILDIEMP 61 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-----------------------cCCCEEEEecCCC
Confidence 5799999999999999999999999975 478899888887754 4899999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
.-|-.|... +.+. ....|||++|++.+++..+++.++|+.+|++||++...|+..+.-..
T Consensus 62 ~rd~~e~~~-~~~~-----~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 62 RRDIIEALL-LASE-----NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred CccHHHHHH-Hhhc-----CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHH
Confidence 999444332 2221 13478999999999999999999999999999999999988775443
No 121
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.14 E-value=4.4e-10 Score=120.82 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=96.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCC---EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC--
Q 001222 966 RILLAEDTPLIQIVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ-- 1040 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~---~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~-- 1040 (1120)
.||||||++..+..++.+|+..++ .+..+.++.++++.+.. .+||+||||+.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-----------------------~~pDlvLlDl~~~ 58 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-----------------------LRPSVVFINEDCF 58 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-----------------------cCCCEEEEeCccc
Confidence 589999999999999999987653 35578999999997753 36999999966
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHHhhcC
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA-YLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~-yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
||.++|.+++++|++.. +.++||++|++.+..... ++.+|.+. |+.|+.+.++|..+|+.+....
T Consensus 59 l~~~~g~~~i~~i~~~~-----p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 59 IHDASNSQRIKQIINQH-----PNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred CCCCChHHHHHHHHHHC-----CCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 88889999999999753 358999999997765543 55566655 8999999999999999988654
No 122
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.08 E-value=2.3e-09 Score=132.81 Aligned_cols=140 Identities=22% Similarity=0.404 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhc--CCcEEEEEeCCCCCceEEeCHHHHHHH---HHHHHHHHhhcc-------------CCCcEEE
Q 001222 516 KELEELVDMFSVQCSN--HNVETVLDLSDNIPRNVRGDPGRVFQI---FSNLINNSIKFT-------------SSGHIII 577 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~--k~i~l~~~i~~~~p~~v~gD~~rL~QI---L~NLL~NAIKfT-------------~~G~v~v 577 (1120)
.++...-.+.+..+.+ |.++|.+. .. ....|+.-|.++ |..||.||+.|. +.|.|++
T Consensus 394 ~vf~RfpR~VRdla~~lgK~V~L~ie--G~---~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L 468 (716)
T COG0643 394 QVFSRFPRMVRDLARKLGKQVELVIE--GE---DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITL 468 (716)
T ss_pred HHHhhccHHHHHHHHHhCCeeEEEEe--cC---CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEE
Confidence 4444444444445544 55555554 33 256799888886 899999999994 2366666
Q ss_pred EEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHh--------------
Q 001222 578 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE-------------- 643 (1120)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~-------------- 643 (1120)
++.- ....+.|+|+|.|.||+.+.+.
T Consensus 469 ~A~~----------------------------------------~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a 508 (716)
T COG0643 469 SAYH----------------------------------------EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEA 508 (716)
T ss_pred EEEc----------------------------------------CCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHh
Confidence 5531 1234789999999999877553
Q ss_pred ----------hhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 644 ----------TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 644 ----------~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
-||.|-|..... -..-+|-|.||=+||+-++.+||+|.|+|++|+||+|++.||+..
T Consensus 509 ~~lSd~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 509 ETLSDEEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred ccCCHHHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHH
Confidence 388886543322 234579999999999999999999999999999999999999864
No 123
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.08 E-value=8.1e-10 Score=110.66 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=75.2
Q ss_pred eCHHHHHHHHHHHHHHHhhccC----CCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceE
Q 001222 550 GDPGRVFQIFSNLINNSIKFTS----SGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 625 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~----~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1120)
.|...+.+++.|+++||++|.- .|.|.+.+... ...
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~----------------------------------------~~~ 74 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE----------------------------------------DHE 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe----------------------------------------CCE
Confidence 4567899999999999999852 34566554211 124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001222 626 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 696 (1120)
Q Consensus 626 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~ 696 (1120)
+.++|.|+|.||+ ..+++|+||+..+. ..+|+|+||++++++ .+++++++.+++||+|+++
T Consensus 75 ~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v~i~ 135 (137)
T TIGR01925 75 VYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTKIIMK 135 (137)
T ss_pred EEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeEEEEE
Confidence 7899999999998 37789999996543 235899999998874 5799999999999999876
No 124
>PRK09191 two-component response regulator; Provisional
Probab=99.06 E-value=2.3e-09 Score=118.87 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=99.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
..+|||+||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-----------------------~~~dlvi~d~~~~ 193 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-----------------------TRPGLILADIQLA 193 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-----------------------cCCCEEEEecCCC
Confidence 35899999999999999999999999987 78999999998753 3699999999999
Q ss_pred C-CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 K-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~-mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
. ++|+++++.+++.. ++|||++|+...... .+...|+++|+.||++.++|...|.++....
T Consensus 194 ~~~~g~e~l~~l~~~~------~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 194 DGSSGIDAVNDILKTF------DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CCCCHHHHHHHHHHhC------CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 5 89999999998642 589999999765443 3445678999999999999999999877654
No 125
>PRK10693 response regulator of RpoS; Provisional
Probab=99.04 E-value=1.1e-09 Score=124.73 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=78.9
Q ss_pred EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEec
Q 001222 993 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1072 (1120)
Q Consensus 993 ~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa 1072 (1120)
.+.++.+|++.+.. ..||+||+|+.||+|+|++++++||+.. ..+|||++|+
T Consensus 2 ~a~~g~~al~~l~~-----------------------~~pDlVL~D~~mp~~~Gle~~~~ir~~~-----~~ipiI~lt~ 53 (303)
T PRK10693 2 LAANGVDALELLGG-----------------------FTPDLIICDLAMPRMNGIEFVEHLRNRG-----DQTPVLVISA 53 (303)
T ss_pred EeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CCCcEEEEEC
Confidence 47899999998853 3699999999999999999999999752 3589999999
Q ss_pred cCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhh
Q 001222 1073 HAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTK 1109 (1120)
Q Consensus 1073 ~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~ 1109 (1120)
....+...+++++|++||+.||+ +.++|.++|.+.++
T Consensus 54 ~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 54 TENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999 58999998877664
No 126
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.00 E-value=2.4e-07 Score=108.48 Aligned_cols=114 Identities=24% Similarity=0.327 Sum_probs=86.0
Q ss_pred HHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhh
Q 001222 527 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 606 (1120)
Q Consensus 527 ~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1120)
.....-++.+..+..+..+..-..-+.-+.+|+.-.|+||+||...-.+.|.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~------------------------ 307 (365)
T COG4585 252 DFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT------------------------ 307 (365)
T ss_pred HHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc------------------------
Confidence 33344555665554431111113457789999999999999999988888775421
Q ss_pred hhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEe
Q 001222 607 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 686 (1120)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~ 686 (1120)
...++++|.|+|+|.+++.. +.|+||.=-|+=|+.+||++.+.|.
T Consensus 308 ----------------~~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv~~lgG~l~i~S~ 352 (365)
T COG4585 308 ----------------DDELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERVEALGGTLTIDSA 352 (365)
T ss_pred ----------------CCEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHHHHcCCEEEEEec
Confidence 12488999999999865421 1689999999999999999999999
Q ss_pred CCCceEEEEEEec
Q 001222 687 NSPGTLMQLYLLL 699 (1120)
Q Consensus 687 ~g~GT~f~~~lpl 699 (1120)
+|+||++++.+|+
T Consensus 353 ~g~Gt~i~i~lPl 365 (365)
T COG4585 353 PGQGTTVTITLPL 365 (365)
T ss_pred CCCceEEEEecCC
Confidence 9999999999985
No 127
>PRK03660 anti-sigma F factor; Provisional
Probab=99.00 E-value=3.2e-09 Score=107.45 Aligned_cols=103 Identities=21% Similarity=0.322 Sum_probs=79.0
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceE
Q 001222 550 GDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 625 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1120)
.|...+.+++.|++.||++|... +.+.+.... .+ ..
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~--------------------------------------~~--~~ 74 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI--------------------------------------EE--EE 74 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE--------------------------------------CC--CE
Confidence 36678999999999999998632 445554321 11 24
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 626 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 626 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
+.++|.|+|.||++ ..+.|++|++.... ..++|+||+|+++ +.+++++++.++.||+|++++++...
T Consensus 75 l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~~ 141 (146)
T PRK03660 75 LEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKKS 141 (146)
T ss_pred EEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEeccc
Confidence 78999999999986 66889999865431 2478999999875 45689999999999999999988653
No 128
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.94 E-value=5.1e-07 Score=99.69 Aligned_cols=194 Identities=18% Similarity=0.321 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
+..+.+...-+=.||-.-+++|...+.++++- ..+++.++....|+.-+.++-.-+..+|. ++.-.. ..+.-+
T Consensus 300 EsiRk~vARELHDeIGQnITAIr~Qa~ivkR~-~~~~q~kqaas~Ie~LslrI~~svrqLL~--rLRP~~----LDdL~l 372 (497)
T COG3851 300 ESIRKDVARELHDEIGQNITAIRTQAGIVKRA-ADNAQVKQAASLIEQLSLRIYDSVRQLLG--RLRPRQ----LDDLTL 372 (497)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-cCCHhHHhHHHHHHHHHHHHHHHHHHHHH--hcCCcc----cccccH
Confidence 34455666667778889999999999988763 34455555566666666666666666653 222221 235667
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
.+.+..+++.+ ...++||.+.++...+....=..-+.-|.+++..++.|-+||.+...|.+..+..
T Consensus 373 ~qai~~l~~Em--~~~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~------------ 438 (497)
T COG3851 373 EQAIRSLLREM--ELEERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQ------------ 438 (497)
T ss_pred HHHHHHHHHHh--hhhhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeC------------
Confidence 78888888765 4567888887776543211101112348889999999999999988888876532
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
...+.++|+|+|.|+|+. .+-+|.||.=.++=|
T Consensus 439 ----------------------------~e~l~Lei~DdG~Gl~~~-------------------~~v~G~Gl~GmrERV 471 (497)
T COG3851 439 ----------------------------DERLMLEIEDDGSGLPPG-------------------SGVQGFGLTGMRERV 471 (497)
T ss_pred ----------------------------CcEEEEEEecCCcCCCCC-------------------CCccCcCcchHHHHH
Confidence 224778999999999763 124689999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEe
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLL 698 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lp 698 (1120)
...||+++++| -.||.+.+++|
T Consensus 472 saLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 472 SALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred HHhCCceEEEe--ccCcEEEEecc
Confidence 99999999998 57999999988
No 129
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.93 E-value=1.4e-08 Score=92.84 Aligned_cols=112 Identities=41% Similarity=0.624 Sum_probs=99.1
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHH
Q 001222 968 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1047 (1120)
Q Consensus 968 LIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~ 1047 (1120)
|++|+++..+..+...|...|+.+..+.++.++++.+.. ..||+|++|..++..+|+
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ii~~~~~~~~~~~ 57 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-----------------------EKPDLILLDIMMPGMDGL 57 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-----------------------CCCCEEEEecCCCCCchH
Confidence 478999999999999999999999999999999987753 379999999999999999
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
+..+.+++.. ..+|+++++.........++++.|+++|+.||++.+.|...+..+
T Consensus 58 ~~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 58 ELLRRIRKRG-----PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred HHHHHHHHhC-----CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 9999998752 358999999887777888999999999999999999999888654
No 130
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.81 E-value=1.5e-06 Score=104.93 Aligned_cols=186 Identities=23% Similarity=0.273 Sum_probs=112.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 516 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~ 516 (1120)
.|..=...-.|.|.+=|++|.++++.- + ++ .....+.. |..+.. .++++.+ ...++..
T Consensus 258 l~~lqsqi~pHfL~NtL~~I~~~~~~~--~----~~--~~~~~v~~----l~~llR--~~l~~~~--------~~~~l~~ 315 (456)
T COG2972 258 LRALQSQINPHFLYNTLETIRMLAEED--D----PE--EAAKVVKA----LSKLLR--YSLSNLD--------NIVTLEI 315 (456)
T ss_pred HHHHHhhcchHHHHhHHHHHHHHHHhc--C----HH--HHHHHHHH----HHHHHH--HHhhCCC--------CeeeHHH
Confidence 333344567899999999999998751 1 11 11111221 222222 1222221 1234444
Q ss_pred HHHHHHHHHHHHhhcCCcEE--EEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcc-----CCCcEEEEEeecccCCCCC
Q 001222 517 ELEELVDMFSVQCSNHNVET--VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-----SSGHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 517 li~~v~~~~~~~a~~k~i~l--~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-----~~G~v~v~~~~~~~~~~~~ 589 (1120)
-+.-+...+..+-.+-+..+ ..++++.... ..|| .-+|..|++|||+|. +.|.|.+.+..
T Consensus 316 E~~~~~kyl~iq~~r~~~~le~~~~i~~~~~~--l~~p---~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~-------- 382 (456)
T COG2972 316 ELLLIEKYLEIQKLRIGDRLEVPLPIDEELEP--LIDP---KLVLQPLVENAIEHGIEPKRPGGSIAISAKK-------- 382 (456)
T ss_pred HHHHHHHHHHHHHhccCcceEEEeccCccccc--ccCc---hHHHhHHHHHHHHHhcccCCCCCEEEEEEEE--------
Confidence 44333333333333333333 3333332211 2454 456778999999997 23455554321
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC-ccchHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG-TGLGLS 668 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G-tGLGLa 668 (1120)
....+.++|.|+|+||+++....+.+.- ++ .|+||.
T Consensus 383 --------------------------------~~~~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~ 419 (456)
T COG2972 383 --------------------------------QDDVIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLS 419 (456)
T ss_pred --------------------------------cCCEEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHH
Confidence 1346889999999999999888765321 12 599999
Q ss_pred HHHHHHHHcCCE--EEEEEeCCCceEEEEEEecC
Q 001222 669 IVRTLVNKMGGE--IKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 669 Ivk~LVe~mGG~--I~v~S~~g~GT~f~~~lpl~ 700 (1120)
=+++.++.+-|. +.++|++++||+.++.+|..
T Consensus 420 Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 420 NVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred HHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 999999999888 69999999999999999864
No 131
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.80 E-value=1.4e-06 Score=94.57 Aligned_cols=192 Identities=23% Similarity=0.329 Sum_probs=128.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCccccceeccH
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR--LLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~--LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
.|..++.-+.|-+++=|..|.+++.+-.... .++ ..+. ..+...|+.. ++-+.|--+ .....+.
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~-~~~-~~~~---~~~~~~Ri~sla~~He~L~~s---------~~~~~~~ 83 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKF-EDE-VLEA---LRESQNRIQSLALIHELLYKS---------GDDTWDF 83 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhc-CCH-HHHH---HHHHHHHHHHHHHHHHHHhcC---------CcceEcH
Confidence 4667888899999999999999998654322 222 2222 2233333332 333433322 1346778
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCH-HHHHHHHHHHHHHHhhcc----CCCcEEEEEeecccCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDP-GRVFQIFSNLINNSIKFT----SSGHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~-~rL~QIL~NLL~NAIKfT----~~G~v~v~~~~~~~~~~~~ 589 (1120)
..+++.+...+.+....+++.+..+..+++ .+..|. .-|--|+.-|+.||+||. +.|.|.|.....
T Consensus 84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~------- 154 (221)
T COG3920 84 ASYLELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSRE------- 154 (221)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-------
Confidence 888888887776655566777777765542 233332 337789999999999996 256666653221
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
.++. ...+.|.|+|.|+|.+. . . ...|+|+.+
T Consensus 155 ------------------------------~~~~-~~~l~v~deg~G~~~~~-------------~---~-~~~g~G~~L 186 (221)
T COG3920 155 ------------------------------GDGG-RFLLTVWDEGGGPPVEA-------------P---L-SRGGFGLQL 186 (221)
T ss_pred ------------------------------CCCC-eEEEEEEECCCCCCCCC-------------C---C-CCCCcHHHH
Confidence 1111 35578999999998642 0 0 245999999
Q ss_pred HHHHH-HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 670 VRTLV-NKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 670 vk~LV-e~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
++.+| ++.||.+...+.. ||.|++.+|...
T Consensus 187 v~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 187 VERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred HHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 99999 8999999987654 999999999753
No 132
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.79 E-value=1e-07 Score=121.02 Aligned_cols=391 Identities=19% Similarity=0.227 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001222 426 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 505 (1120)
Q Consensus 426 ~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~ 505 (1120)
.+++++..+......+...++|..|+|.+.+++....+..+..+..++.-.+....+.+..+..+++.-.|.++...|..
T Consensus 374 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~ 453 (786)
T KOG0519|consen 374 RAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTG 453 (786)
T ss_pred hhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCc
Confidence 44555556666777888888899999999999999866656555666666677777888889999999999999888877
Q ss_pred cccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhh--ccCCCc-EEEEEeec
Q 001222 506 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK--FTSSGH-IIIRGWCE 582 (1120)
Q Consensus 506 ~l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIK--fT~~G~-v~v~~~~~ 582 (1120)
..+...+.+..++.+.+.........+...+...+..+.+..+.+|..++.|++.+..+++.+ ++..|. .++.+..+
T Consensus 454 ~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 533 (786)
T KOG0519|consen 454 LGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAE 533 (786)
T ss_pred ccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEec
Confidence 777788999999999999888888888888888888888888999999999999999999999 888774 23333322
Q ss_pred ccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001222 583 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 662 (1120)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G 662 (1120)
.....-.... ..+ ...+.. . .......+++.+++++.|+...+....|..|.+....+.+...+
T Consensus 534 ~~~~~vd~~~--~~~---~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 597 (786)
T KOG0519|consen 534 LLGISVDVSL--SLS---LAFWFL-----D------LSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSG 597 (786)
T ss_pred ccCccccccc--cch---hhhhhc-----c------cccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccc
Confidence 1111111000 000 000000 0 01112357899999999999999999988888776655544578
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeC-CCc----eEEEEEEecC-------CCCcc----ccccCCCCCCcEEEEeecChh
Q 001222 663 TGLGLSIVRTLVNKMGGEIKVVKKN-SPG----TLMQLYLLLG-------ASSES----KQIYDADFPNTVVVLATVGSM 726 (1120)
Q Consensus 663 tGLGLaIvk~LVe~mGG~I~v~S~~-g~G----T~f~~~lpl~-------~~~~~----~~~~~~~~~~~~v~~~~~~~~ 726 (1120)
.+++++.|++..+.++|.+++.-.. +.. +++....... ..... ....+....+..+++++.+..
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~v 677 (786)
T KOG0519|consen 598 SGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPV 677 (786)
T ss_pred cccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccc
Confidence 8999999999999999999886211 100 0000000000 00000 011122234677999999999
Q ss_pred hHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeecccc
Q 001222 727 ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDL 806 (1120)
Q Consensus 727 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~ 806 (1120)
.+......+.+.|+.+.++....+.. ..+. ...++.++..|..++.+
T Consensus 678 n~~Va~~~l~~~g~~~~~~~sg~e~l---~~~~------------------------------~~~~y~~ifmD~qMP~m 724 (786)
T KOG0519|consen 678 NRKVATGMLKKLGAEVTEVNSGQEAL---DKLK------------------------------PPHSYDVIFMDLQMPEM 724 (786)
T ss_pred hHHHHHHHHHHhCCeeEeecCcHHHH---HhcC------------------------------CCCcccEEEEEcCCccc
Confidence 99999999999999888776322211 1110 23578899999999999
Q ss_pred CchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001222 807 SSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 868 (1120)
Q Consensus 807 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 868 (1120)
++....+..+.... .+-.+++. +..+......+..+.|.+.+++||+...++...+...
T Consensus 725 DG~e~~~~irk~~~-~~~pIvAl--Ta~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 725 DGYEATREIRKKER-WHLPIVAL--TADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred chHHHHHHHHHhhc-CCCCEEEE--ecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHH
Confidence 99655554443222 12222232 2335556778888999999999999998888776543
No 133
>PRK15029 arginine decarboxylase; Provisional
Probab=98.76 E-value=4.3e-08 Score=122.13 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=86.2
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 965 LRILLAEDTPL--------IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 965 ~~ILIVdD~~~--------n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
++||||||+.. .++.++..|+..||+|..+.++.+|++.+.. ...||+||
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~----------------------~~~~DlVL 58 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------------------NEAIDCLM 58 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------cCCCcEEE
Confidence 47999999995 6999999999999999999999999999853 13699999
Q ss_pred EeCCCCCCCHH----HHHHHHHhcccccCCCCcceEEEeccCC--HHHHHHHHHcCCCEEEECCCCHHHH
Q 001222 1037 MDCQMPKMDGY----EATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPIDSERM 1100 (1120)
Q Consensus 1037 mD~~MP~mdG~----e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi~~~~L 1100 (1120)
+|++||+|+|+ +++++||+.. ..+|||++|+..+ +..-...++ -+++|+-+--+..+.
T Consensus 59 LD~~LPd~dG~~~~~ell~~IR~~~-----~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 59 FSYQMEHPDEHQNVRQLIGKLHERQ-----QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred EECCCCCCccchhHHHHHHHHHhhC-----CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 99999999998 8999999642 3699999999986 222222222 267888876654443
No 134
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=3.3e-08 Score=108.87 Aligned_cols=115 Identities=33% Similarity=0.515 Sum_probs=96.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-CE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-AT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++|+++||++..+..+..++.... ++ +..+.++.++++.++. ..+|++|+|+.||
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~fldI~~~ 58 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-----------------------LRPDLVFLDIAMP 58 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-----------------------cCCCeEEEeeccC
Confidence 479999999999999999998422 22 3378999999999864 2799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
.|+|+|+.++||... ...+||++|++.. ....+++..+-||+.||++.+.|...+.++.+
T Consensus 59 ~~~G~ela~~i~~~~-----~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 59 DINGIELAARIRKGD-----PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred ccchHHHHHHhcccC-----CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 999999999999863 3578999999865 44566788999999999999999999987544
No 135
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.65 E-value=8.6e-06 Score=95.07 Aligned_cols=185 Identities=24% Similarity=0.448 Sum_probs=129.2
Q ss_pred HhHhhhhhHHHHHHHHHH----HHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001222 444 NMSHELRTPMAAIIGLLE----ILKSD--DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 517 (1120)
Q Consensus 444 ~~SHELRTPL~~I~g~~e----lL~~~--~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~l 517 (1120)
.|+.||.--|+-.+.++. +|+.. ....++.++.+..|+.....--+-+.++|.--|+ ..++-+|..-
T Consensus 375 tIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~A 447 (574)
T COG3850 375 TIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPPA 447 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHHH
Confidence 455666666655555554 44322 1344556677777887777777778888775543 3345567788
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCc-eEEeC-HHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCc
Q 001222 518 LEELVDMFSVQCSNHNVETVLDLSDNIPR-NVRGD-PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 595 (1120)
Q Consensus 518 i~~v~~~~~~~a~~k~i~l~~~i~~~~p~-~v~gD-~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~ 595 (1120)
++++++.|.. +-++.+.+++. +|. .+..+ .-.+-||+.-=++||+||.....|.|.+...
T Consensus 448 L~~~~~~f~~---qtg~~~~l~~q--lp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~------------- 509 (574)
T COG3850 448 LEQMLAEFSN---QTGITVTLDYQ--LPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQN------------- 509 (574)
T ss_pred HHHHHHHHHh---ccCCeEEEecc--CCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec-------------
Confidence 8888887754 45666666543 222 12222 2347789999999999999888887765321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001222 596 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
+ ..+.+.|+|+|+|||+.. . .+| --||.|-++=++
T Consensus 510 -------------------------~--g~~~~~VeDnG~Gi~~~~-----------e------~~g-HyGL~IM~ERA~ 544 (574)
T COG3850 510 -------------------------D--GQVTLTVEDNGVGIDEAA-----------E------PSG-HYGLNIMRERAQ 544 (574)
T ss_pred -------------------------C--CeEEEEEeeCCcCCCCcc-----------C------CCC-CcchHHHHHHHH
Confidence 1 347899999999998751 1 123 578999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEe
Q 001222 676 KMGGEIKVVKKNSPGTLMQLYLL 698 (1120)
Q Consensus 676 ~mGG~I~v~S~~g~GT~f~~~lp 698 (1120)
..||++.+++.+|+||.+.++||
T Consensus 545 ~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 545 RLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred HhcCeEEEeecCCCCeEEEEEec
Confidence 99999999999999999999986
No 136
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.63 E-value=3.4e-05 Score=84.63 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHHhh
Q 001222 451 TPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 530 (1120)
Q Consensus 451 TPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~~v~~~~~~~a~ 530 (1120)
.-|-+.+-.+|++...-..++. -....|.+++.+|..-|+++-.+|- .--.--....-|..-++-+++.|. .
T Consensus 264 Q~LVs~k~~lela~~ql~~p~~--~a~~aieKaa~aL~~Ai~EVRRiSH---~LRP~~LDDLGL~aALe~L~~~f~---~ 335 (459)
T COG4564 264 QNLVSVKCALELAARQLNPPKG--GAHPAIEKAADALNGAIKEVRRISH---DLRPRALDDLGLTAALEALLEDFK---E 335 (459)
T ss_pred HHHHHHHHHHHHHhccCCCCCC--CCchhhhhHHHHHHHHHHHHHHhcc---ccChhhhhhhhHHHHHHHHHHHhh---h
Confidence 3455666777776543222111 1124577888888888888766553 111111223445556666666655 6
Q ss_pred cCCcEEEEEeCCCCCceEE-eCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhh
Q 001222 531 NHNVETVLDLSDNIPRNVR-GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 609 (1120)
Q Consensus 531 ~k~i~l~~~i~~~~p~~v~-gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1120)
+.|+++.+..+.. |..+. .-...|.+|..--++|-=||...-.|.+...
T Consensus 336 ~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~----------------------------- 385 (459)
T COG4564 336 RTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ----------------------------- 385 (459)
T ss_pred ccCeEEEEEecCC-cccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec-----------------------------
Confidence 6788888776432 32222 2346789999999999999985555555431
Q ss_pred hhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001222 610 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 689 (1120)
Q Consensus 610 ~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~ 689 (1120)
.....+.+.|.|+|.|.+-+... ..-.||||-=.++=+...||++.|+|.+.
T Consensus 386 -----------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrERma~~GG~~~v~s~p~- 437 (459)
T COG4564 386 -----------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRERMAHFGGELEVESSPQ- 437 (459)
T ss_pred -----------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHHHHHHHhCceEEEEecCC-
Confidence 11224788999999998765432 11269999999999999999999999886
Q ss_pred ceEEEEEEecCC
Q 001222 690 GTLMQLYLLLGA 701 (1120)
Q Consensus 690 GT~f~~~lpl~~ 701 (1120)
||..++.||...
T Consensus 438 GTel~v~Lp~~~ 449 (459)
T COG4564 438 GTELTVLLPLDA 449 (459)
T ss_pred CcEEEEEecchh
Confidence 999999999753
No 137
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.61 E-value=3.4e-07 Score=94.52 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 626 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 626 (1120)
|...+..++..++.|||+|... |.|.|.+... ...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~----------------------------------------~~~l 78 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY----------------------------------------EDRL 78 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE----------------------------------------CCEE
Confidence 5567888999999999999853 4455543211 1258
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
.+.|.|+|+|++++.+...|.||+...+.. ...+.|+||.++++|++. +.+.+ ..|++|++.-.+.
T Consensus 79 ~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~ 144 (161)
T PRK04069 79 EIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYIN 144 (161)
T ss_pred EEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcC
Confidence 899999999999999999999988654432 224679999999999986 66665 4688888876554
No 138
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.47 E-value=7.8e-06 Score=91.43 Aligned_cols=182 Identities=20% Similarity=0.327 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc------ccceeccHHHHHHHHHHHHHHHhhcCCc---EEEEEeCCCCC
Q 001222 475 STVCQIKKSSYALLRLLNRILDLSKVESGKME------LENTEFDLQKELEELVDMFSVQCSNHNV---ETVLDLSDNIP 545 (1120)
Q Consensus 475 ~~l~~I~~s~~~L~~LIndiLdlskiesg~~~------l~~~~~dL~~li~~v~~~~~~~a~~k~i---~l~~~i~~~~p 545 (1120)
..++....+--.+.-|+|.=+-+-. +|+-. .-....++.++|+++.+..+..|..+=+ ++.+..+....
T Consensus 175 yFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~ 252 (414)
T KOG0787|consen 175 YFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALS 252 (414)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCccccc
Confidence 4455543333333334555444432 33322 1234678999999999988877776532 33443333322
Q ss_pred ceEEeCHHHHHHHHHHHHHHHhhccC-----CCc----EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhcccc
Q 001222 546 RNVRGDPGRVFQIFSNLINNSIKFTS-----SGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM 616 (1120)
Q Consensus 546 ~~v~gD~~rL~QIL~NLL~NAIKfT~-----~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1120)
.. ..=|..|.-++.-|+.||+++|- +|. |.|.+.
T Consensus 253 ~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~------------------------------------ 295 (414)
T KOG0787|consen 253 FT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVA------------------------------------ 295 (414)
T ss_pred Cc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEe------------------------------------
Confidence 11 13578899999999999999883 232 333321
Q ss_pred ccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCC------CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCc
Q 001222 617 NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 690 (1120)
Q Consensus 617 ~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~------s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~G 690 (1120)
.++.-+.|.|.|.|-||+.++.+++|.=-|...+ ..+..-.|.|-||.|||...+..||++.+.|-+|-|
T Consensus 296 ----~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~G 371 (414)
T KOG0787|consen 296 ----KGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIG 371 (414)
T ss_pred ----cCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccc
Confidence 1122367889999999999999999986554322 112334699999999999999999999999999999
Q ss_pred eEEEEEEec
Q 001222 691 TLMQLYLLL 699 (1120)
Q Consensus 691 T~f~~~lpl 699 (1120)
|-..++|..
T Consensus 372 TD~yI~Lk~ 380 (414)
T KOG0787|consen 372 TDVYIYLKA 380 (414)
T ss_pred cceEEEecc
Confidence 998888754
No 139
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.45 E-value=2.6e-05 Score=89.74 Aligned_cols=130 Identities=28% Similarity=0.426 Sum_probs=92.5
Q ss_pred ceeccHHHHHHHHHHHHHHHhhcC--CcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcc-----CCCcEEEEEee
Q 001222 509 NTEFDLQKELEELVDMFSVQCSNH--NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-----SSGHIIIRGWC 581 (1120)
Q Consensus 509 ~~~~dL~~li~~v~~~~~~~a~~k--~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-----~~G~v~v~~~~ 581 (1120)
.+.+.|.+.++.+-..++..-.+- .+++.+++++.+.. + .=|. -++.=|+.|||||. +.|.|.|.+.+
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~-~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-V-QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-c-cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 346788888888877655443332 34555555544311 1 1112 25667899999995 24677776643
Q ss_pred cccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCC
Q 001222 582 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 661 (1120)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~ 661 (1120)
+ ++ .++++|+|+|-||+++ ...
T Consensus 489 ~--------------------------------------d~--~l~i~VeDng~li~p~------------------~~~ 510 (557)
T COG3275 489 E--------------------------------------DA--DLRIEVEDNGGLIQPD------------------EED 510 (557)
T ss_pred e--------------------------------------CC--eEEEEEecCCCCcCCC------------------CCC
Confidence 2 11 2789999999999886 234
Q ss_pred CccchHHHHHHHHHHcCC---EEEEEEeCCCceEEEEEEecCC
Q 001222 662 GTGLGLSIVRTLVNKMGG---EIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 662 GtGLGLaIvk~LVe~mGG---~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|+|+||+.+++=++.+=| -+.++|.+..||++.|.+|...
T Consensus 511 g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 511 GTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred CCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 899999999999998888 7999999999999999999864
No 140
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.43 E-value=9.1e-07 Score=75.32 Aligned_cols=64 Identities=52% Similarity=0.786 Sum_probs=55.6
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001222 438 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVES 502 (1120)
Q Consensus 438 Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskies 502 (1120)
+.+|++.++|||||||++|.++++.+.. ...+++..+.+..+..++.++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLED-TELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999999999999998875 334555577888899999999999999999998765
No 141
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=98.41 E-value=4.7e-05 Score=94.54 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=59.5
Q ss_pred cceeeeee--ecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHH-hhcCeEEEEECCcceEEEecCC
Q 001222 217 VASWHVAV--SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELV-EVHSGHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 217 ~~~w~~~~--~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~-~~~~~~iyi~~~~G~ll~~s~~ 292 (1120)
...|+..+ ...++.++++.+.||++ +|+++||+|++..+..+.++++... .+..|.+|+.|.+|.+++++..
T Consensus 220 ~~~~~~~~~~d~~tg~~vit~s~pv~~----~g~~~GVv~~di~l~~l~~~l~~~~~~~~~g~~~Lvd~~G~iia~~~~ 294 (570)
T PRK15426 220 GVRWFTSQPDDASNTEPQVTASVPVDA----GNYWYGVLAMDIPVRSLQQFLRNAIDKDLDGEYQLYDSHLRLLTSSAP 294 (570)
T ss_pred CeeEecCCcccccCCCeEEEEEEEEcc----CCeEEEEEEEEecHHHHHHHHHHhhccCCCcEEEEEcCCCcEEEecCc
Confidence 44588664 33457899999999986 5789999999999999999998775 5778999999999999987653
No 142
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.35 E-value=3.5e-06 Score=86.88 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhhccCC----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001222 552 PGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 627 (1120)
Q Consensus 552 ~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 627 (1120)
...+.-++..++.||++|... |.|.|..+.. ...+.
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~----------------------------------------~~~l~ 79 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY----------------------------------------EDRLE 79 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe----------------------------------------CCEEE
Confidence 345888999999999999743 4566554211 12478
Q ss_pred EEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 628 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+.|.|+|.|++++.++..|.+++..++.. ...+.|+||.|+++|++ ++.+.+ ++|+++++...+.
T Consensus 80 i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~~ 144 (159)
T TIGR01924 80 IIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYLN 144 (159)
T ss_pred EEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEEc
Confidence 99999999999999998888876544322 23467999999999998 677776 4578877776553
No 143
>PF14501 HATPase_c_5: GHKL domain
Probab=98.21 E-value=1.8e-05 Score=74.88 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 626 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 626 (1120)
|+.-|..+|.|||+||+++... ..|.+.+.. ....+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~----------------------------------------~~~~~ 41 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIRE----------------------------------------ENGFL 41 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe----------------------------------------cCCEE
Confidence 4566889999999999998642 234443321 12357
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 697 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~l 697 (1120)
.|.|+++-.+ + .++++ +++....+.|+||.+++++++.++|++.++.+.+ .|++.+
T Consensus 42 ~i~i~N~~~~---~-~~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f~~~i 97 (100)
T PF14501_consen 42 VIIIENSCEK---E-IEKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IFTVKI 97 (100)
T ss_pred EEEEEECCCC---c-ccccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EEEEEE
Confidence 8899998554 1 12222 1233457899999999999999999999987754 455444
No 144
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.18 E-value=1.4e-05 Score=104.88 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=98.7
Q ss_pred cccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 961 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 961 ~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+.+.+||++||++..+..+..+|+..|+.+..+.++.+ +. ...||++++|..
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~-----------------------~~~~d~il~~~~ 585 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP-----------------------EAHYDILLLGLP 585 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc-----------------------cCCCCEEEeccc
Confidence 355789999999999999999999999999999999887 22 137999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
||.+++.+.+...+..... ...++|+++..........+.+.|+++|+.||++..+|...+....
T Consensus 586 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 586 VTFREPLTMLHERLAKAKS---MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCCCCCHHHHHHHHHhhhh---cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 9998877665555443222 2357888898888889999999999999999999999999987755
No 145
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.16 E-value=9.3e-06 Score=68.45 Aligned_cols=62 Identities=48% Similarity=0.697 Sum_probs=53.6
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001222 438 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 499 (1120)
Q Consensus 438 Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlsk 499 (1120)
+.++++.++|||||||++|.++++.+.......++....+..+..++.++..++++++++++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999998765444566677888899999999999999999875
No 146
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.16 E-value=1.8e-06 Score=100.93 Aligned_cols=93 Identities=27% Similarity=0.406 Sum_probs=82.3
Q ss_pred CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceE
Q 001222 989 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1068 (1120)
Q Consensus 989 ~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipII 1068 (1120)
++|..+..|.+|++.+.. +++|.+++|++||+|||+++|+++++.. .+++
T Consensus 13 ~~v~~a~~g~~~l~~~~~-----------------------~~~~~~lld~~m~~~~~~~~~~~lk~~~-------~~~v 62 (435)
T COG3706 13 KEVATAKKGLIALAILLD-----------------------HKPDYKLLDVMMPGMDGFELCRRLKAEP-------ATVV 62 (435)
T ss_pred hhhhhccchHHHHHHHhc-----------------------CCCCeEEeecccCCcCchhHHHHHhcCC-------cceE
Confidence 467779999999998853 5899999999999999999999999753 2399
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1069 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1069 alTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|+.....+..+.+++|++++|+||++...+..+...+....
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 63 MVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRLK 105 (435)
T ss_pred EEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccch
Confidence 9999999999999999999999999999999999888876543
No 147
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=98.02 E-value=3.4e-06 Score=76.55 Aligned_cols=71 Identities=18% Similarity=0.520 Sum_probs=60.7
Q ss_pred eeeeeec-ccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCCC
Q 001222 220 WHVAVSK-FTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 293 (1120)
Q Consensus 220 w~~~~~~-~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 293 (1120)
|++.|.. .++.++++++.|||+. +|+++||++++..+..+.++++.+..+..|.+|+.|++|.+++++..+
T Consensus 1 ~s~py~~~~~~~~vi~~s~pi~~~---~g~~~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~hp~~~ 72 (81)
T PF02743_consen 1 WSEPYVDAATGQPVITISVPIYDD---DGKIIGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGTIIAHPDKD 72 (81)
T ss_dssp E---EEETTTTEEEEEEEEEEEET---TTEEEEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE-SSGG
T ss_pred CCcCEEeCCCCcEEEEEEEEEECC---CCCEEEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCCEEEeCChH
Confidence 7755544 4689999999999996 899999999999999999999999999999999999999999987654
No 148
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=9.8e-05 Score=84.68 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEe
Q 001222 553 GRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 632 (1120)
Q Consensus 553 ~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~D 632 (1120)
..+.+++.|||.||+++.. ..|.|.+.. ++ ...|+|.|
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~---------------------------------------~~--~~~i~V~D 58 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE---------------------------------------GG--LKLIEVSD 58 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe---------------------------------------CC--EEEEEEEe
Confidence 4678999999999999864 455554311 11 24589999
Q ss_pred CCCCCChhhHhhhhcccccCCCCC------CCCCCCccchHHHHHHHHHHcCCEEEEEEeC--CCceEEEEE
Q 001222 633 TGCGIDQSKWETVFESFEQGDPST------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN--SPGTLMQLY 696 (1120)
Q Consensus 633 tG~GI~~e~l~~IFe~F~q~~~s~------~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~--g~GT~f~~~ 696 (1120)
+|.||++++++++|++|+..+... ....|--|.||+-...+ +++.|.|.. +.+..+.+.
T Consensus 59 nG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 59 NGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 999999999999999999765422 12234557787655443 378999875 445544443
No 149
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00017 Score=82.76 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=84.2
Q ss_pred eCHHHHHHHHHHHHHHHhhccCCCc----EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceE
Q 001222 550 GDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 625 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1120)
+-...|.|++.-|+.|++..|+..+ |.|.+. ..++.+
T Consensus 32 ~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------~~~~d~ 72 (538)
T COG1389 32 GPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------RIGKDH 72 (538)
T ss_pred CchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE---------------------------------------ecCCce
Confidence 3456799999999999999998654 333321 122446
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCC-C-CCCCCCccchHHHHHHHHHHcCCE-EEEEEeCCC-ceEEEEEEecCC
Q 001222 626 LCFEVDDTGCGIDQSKWETVFESFEQGDPS-T-TRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSP-GTLMQLYLLLGA 701 (1120)
Q Consensus 626 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s-~-~~~~~GtGLGLaIvk~LVe~mGG~-I~v~S~~g~-GT~f~~~lpl~~ 701 (1120)
..+.|.|||+|||+++++++|-++.-++.- . .+..|--|||.+-|=-..++.-|+ +.|.|..+. ++...+.|-...
T Consensus 73 y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~ 152 (538)
T COG1389 73 YKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDV 152 (538)
T ss_pred EEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecC
Confidence 789999999999999999999886544332 1 112245799999999999998887 777776654 887777776655
Q ss_pred CC
Q 001222 702 SS 703 (1120)
Q Consensus 702 ~~ 703 (1120)
..
T Consensus 153 ~k 154 (538)
T COG1389 153 QK 154 (538)
T ss_pred CC
Confidence 43
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.41 E-value=0.0009 Score=65.72 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 626 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 626 (1120)
+...+.-++.-++.||++|... +.|.|.... ....+
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~----------------------------------------~~~~l 67 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV----------------------------------------DPDRL 67 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE----------------------------------------cCCEE
Confidence 3457888999999999999875 345554321 12248
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 696 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~ 696 (1120)
.++|.|.|.|+++.....-... ........|+||.|++++++.+ .+ + .+.|+++++.
T Consensus 68 ~i~v~D~G~~~d~~~~~~~~~~-------~~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 68 RISVRDNGPGFDPEQLPQPDPW-------EPDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred EEEEEECCCCCChhhccCcccc-------cCCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 8999999999988765432210 0022346799999999999876 45 3 7889988764
No 151
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.70 E-value=0.0099 Score=45.99 Aligned_cols=55 Identities=40% Similarity=0.652 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+++++++|++..+..+...+...|+.+..+.++.++...+.. ..||++++|+.+|
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-----------------------EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeccCC
Confidence 368999999999999999999999999999999999887753 3699999998775
No 152
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.55 E-value=0.015 Score=56.13 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=75.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc-EEEEeCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD-LILMDCQMPKM 1044 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-lILmD~~MP~m 1044 (1120)
||||+|||..-+.-+..+|+-+|+++..+...+- ...... ..++ +++....++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~-----------------------~~~~~~~v~~g~~~-- 54 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS-----------------------SPWEACAVILGSCS-- 54 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh-----------------------cCCcEEEEEecCch--
Confidence 6999999999999999999999999998886543 122211 1333 445555444
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
...+.++.+-+. .+++|++.+.......+.. .+-+-|..|++..+|.+.++++
T Consensus 55 ~~~~~l~~l~~~-----~~~~Pvlllg~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 55 KLAELLKELLKW-----APHIPVLLLGEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred hHHHHHHHHHhh-----CCCCCEEEECCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 445555555543 2579999999877662211 1667799999999999999876
No 153
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.29 E-value=0.016 Score=72.55 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEe
Q 001222 553 GRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 632 (1120)
Q Consensus 553 ~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~D 632 (1120)
.++..|+..||.|||... ...|.|.+. .+ ....++|.|
T Consensus 21 ~~~~svvkElveNsiDAg-at~I~v~i~---------------------------------------~~--g~~~i~V~D 58 (617)
T PRK00095 21 ERPASVVKELVENALDAG-ATRIDIEIE---------------------------------------EG--GLKLIRVRD 58 (617)
T ss_pred cCHHHHHHHHHHHHHhCC-CCEEEEEEE---------------------------------------eC--CeEEEEEEE
Confidence 356789999999999964 334555431 11 135689999
Q ss_pred CCCCCChhhHhhhhcccccCCCCCC------CCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 633 TGCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 633 tG~GI~~e~l~~IFe~F~q~~~s~~------~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
+|+||++++++.+|.+++..+-... ...|=-|.||+-...+ +++.|.|..
T Consensus 59 nG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 59 NGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred cCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 9999999999999998875432210 1223356777655444 366776655
No 154
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.07 E-value=0.054 Score=55.03 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=63.3
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC-----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCce
Q 001222 550 GDPGRVFQIFSNLINNSIKFTSS-----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKL 624 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~~-----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1120)
-|-.+++-++.-++.||++|..+ |.|.|..... + .
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--------------------------------------~--~ 75 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--------------------------------------D--G 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--------------------------------------C--C
Confidence 36778999999999999999865 6677654321 1 2
Q ss_pred EEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001222 625 ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 693 (1120)
Q Consensus 625 ~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f 693 (1120)
.+++.|.|.|+||.+ .+..+.+.+.. ...-..-|+||.+.++++. ++.+++..+.+.++
T Consensus 76 ~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~~~~ 134 (146)
T COG2172 76 KLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGRNRL 134 (146)
T ss_pred eEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCceEE
Confidence 388999999988754 44455554211 1111234899999999875 57888666654343
No 155
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.22 E-value=0.47 Score=46.60 Aligned_cols=107 Identities=18% Similarity=0.088 Sum_probs=75.3
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-
Q 001222 971 EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG- 1046 (1120)
Q Consensus 971 dD~~~n~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG- 1046 (1120)
|.+..=...+..+|+..||+|....- .++.++.+.+ ..+|+|.+-..|+..-.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-----------------------~~~d~V~iS~~~~~~~~~ 66 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-----------------------EDVDVIGLSSLSGGHMTL 66 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEcccchhhHHH
Confidence 66666677788889999999887543 5566666654 37999999988864322
Q ss_pred -HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001222 1047 -YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1105 (1120)
Q Consensus 1047 -~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1105 (1120)
-++++++|+. +...+ .|++-+....++..+..++|+|+|+..--+.++....|+
T Consensus 67 ~~~~~~~L~~~----~~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 67 FPEVIELLREL----GAGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHHhc----CCCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 3344555543 11234 455565566777888999999999999888888776654
No 156
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=94.87 E-value=0.021 Score=57.32 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=40.0
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC--CCCCCCCccch--HHHHHHHHHHcCCEEEEEEeCC-CceEEEEEE
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPS--TTRKHGGTGLG--LSIVRTLVNKMGGEIKVVKKNS-PGTLMQLYL 697 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s--~~~~~~GtGLG--LaIvk~LVe~mGG~I~v~S~~g-~GT~f~~~l 697 (1120)
.|.|.|+|.||+++++.++|...+..... .....|-.|+| +|+. .++..+.|.|... ....+++..
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEE
Confidence 58899999999999999977654422210 12234567788 4443 4688899999864 333444444
No 157
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.80 E-value=0.5 Score=47.54 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=86.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+.+||+. |.+..-..++..+|+..||+|+-... .++.++++.+ ..+|+|.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----------------------~~~d~V~ 59 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----------------------TDADAIL 59 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4588888 88889899999999999999997553 4555555543 4799999
Q ss_pred EeCCCCCCC--HHHHHHHHHhcccccCCCCcceEEEeccC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1037 MDCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1037 mD~~MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
+-+.|+... --++.+++|+.. .++++|+ +-+.. ..++..+..+.|+|.+....-+.++....|++.+
T Consensus 60 lS~~~~~~~~~~~~~~~~L~~~~----~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 60 VSSLYGHGEIDCRGLREKCIEAG----LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred EcCccccCHHHHHHHHHHHHhcC----CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 999887532 245556666532 2345544 44432 3556678999999999999999999999988876
Q ss_pred h
Q 001222 1109 K 1109 (1120)
Q Consensus 1109 ~ 1109 (1120)
+
T Consensus 135 ~ 135 (137)
T PRK02261 135 N 135 (137)
T ss_pred c
Confidence 4
No 158
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.04 E-value=1.7 Score=43.39 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=75.2
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHH
Q 001222 971 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1047 (1120)
Q Consensus 971 dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~ 1047 (1120)
|-+..=..++..+|+..||+|.-.. +.++.++...+ ..+|+|.+-..|.. -.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-----------------------~~adii~iSsl~~~--~~ 67 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-----------------------ADVHVVGVSSLAGG--HL 67 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEcCchhh--hH
Confidence 4555566788889999999988643 46677777654 37999998766632 23
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
+.++.+.+.-...+..+++ |++-+....++..+..++|+|+|+..--+..+..+.+.+.+
T Consensus 68 ~~~~~~~~~L~~~g~~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 3333333222221222444 44455556677888999999999998888888888887755
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=92.62 E-value=1.5 Score=42.64 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=64.2
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--C
Q 001222 971 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--D 1045 (1120)
Q Consensus 971 dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m--d 1045 (1120)
|.+..-...+..+|+..||+|.... ..++.++.+.+ ..||+|.+-+.|... +
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-----------------------~~pdvV~iS~~~~~~~~~ 66 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-----------------------EDADAIGLSGLLTTHMTL 66 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEeccccccHHH
Confidence 6666777888999999999996643 34455555543 479999999876543 3
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
..++.+.+|+..+ .+++ |++.+.........+.+.|+|.|+..
T Consensus 67 ~~~~i~~l~~~~~----~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 67 MKEVIEELKEAGL----DDIP-VLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHcCC----CCCe-EEEECCCCChhHHHHHHcCCeEEECC
Confidence 4566677776421 1354 45555555555567889999988863
No 160
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=91.25 E-value=0.39 Score=60.37 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 627 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 627 (1120)
+...|..++.-||+||+.....| .|.|.+. .++ .
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~---------------------------------------~dg----~ 70 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH---------------------------------------ADG----S 70 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe---------------------------------------CCC----c
Confidence 56789999999999999875544 3444321 111 4
Q ss_pred EEEEeCCCCCChhhHhh--------hhcccccCCC----CCCCCCCCccchHHHHHHHHHH
Q 001222 628 FEVDDTGCGIDQSKWET--------VFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l~~--------IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~ 676 (1120)
|+|.|+|.|||.+..+. +|....-+.. ......|=.|.||+.|..+-+.
T Consensus 71 I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 71 VSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred EEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 88999999999998888 8876432211 1111123379999999888654
No 161
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=91.17 E-value=0.26 Score=61.77 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCChhh--------Hhhhh-cccccCCC--CCCCC-CCCccchHHHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSK--------WETVF-ESFEQGDP--STTRK-HGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~--------l~~IF-e~F~q~~~--s~~~~-~~GtGLGLaIvk~LVe~ 676 (1120)
.|+|.|+|.|||.+. ++-+| .+...+.- ...+. .|=.|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 378999999999988 77787 43321111 11112 23379999999988873
No 162
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=89.69 E-value=2.8 Score=40.77 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--CHHHHHHHHHh
Q 001222 978 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--DGYEATIEIRK 1055 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m--dG~e~~~~IR~ 1055 (1120)
..+...|++.|++|+.+.+..+|+..++. ...++.|++|+. +.. ...+++++||+
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~----------------------~~~i~avvi~~d-~~~~~~~~~ll~~i~~ 63 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIES----------------------FTDIAAVVISWD-GEEEDEAQELLDKIRE 63 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHC----------------------TTTEEEEEEECH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHh----------------------CCCeeEEEEEcc-cccchhHHHHHHHHHH
Confidence 34667888899999999999999999974 247899999986 211 24678888887
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHh
Q 001222 1056 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLT 1108 (1120)
Q Consensus 1056 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~-~~L~~~I~~l~ 1108 (1120)
.. ..+||.+++.....++.-...-.-.++|+...-+- +....+|.+..
T Consensus 64 ~~-----~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 64 RN-----FGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp HS-----TT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred hC-----CCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 53 36999999987655555455556678999887644 44445555443
No 163
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.66 E-value=0.99 Score=52.09 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222 988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus 988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
|.++..+.+..++-..+. .-.+|++|..| - -..++...+. +..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~-----~--~~~~~~~~p~----~~~v 44 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA-------------------------RAPLVLVDADM-----A--EACAAAGLPR----RRRV 44 (322)
T ss_pred CCceEEccCchhhhhccc-------------------------cCCeEEECchh-----h--hHHHhccCCC----CCCE
Confidence 456777777766655553 35789999755 1 1223332221 2346
Q ss_pred EEEec-cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1068 VALTA-HAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1068 IalTa-~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
|++++ ..+.+...+++.+|+.+||.+|++..+|.+.+.++.
T Consensus 45 v~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 45 VLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred EEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 65555 456788889999999999999999999999998874
No 164
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.23 E-value=1.7 Score=41.89 Aligned_cols=113 Identities=23% Similarity=0.334 Sum_probs=79.6
Q ss_pred cccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 961 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 961 ~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+.|.+.+.||.|..........|..-+.+|+--.. +..+ ....||++|+.+-
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~l-----------------------p~~hYD~~Ll~va 60 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSAL-----------------------PPAHYDMMLLGVA 60 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccc----cccc-----------------------Chhhhceeeeccc
Confidence 356889999999999999999999999988886443 2222 1236999999987
Q ss_pred CCCCCHHHHH--HHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001222 1041 MPKMDGYEAT--IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1105 (1120)
Q Consensus 1041 MP~mdG~e~~--~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1105 (1120)
.+--+-..+- +-.|... ..+--|+++-.++.. ..++..+-|+-++|.||++...|+..+.
T Consensus 61 vtfr~n~tm~~~~l~~Al~----mtd~vilalPs~~qv-~AeqLkQ~g~~~CllKPls~~rLlptll 122 (140)
T COG4999 61 VTFRENLTMQHERLAKALS----MTDFVILALPSHAQV-NAEQLKQDGAGACLLKPLSSTRLLPTLL 122 (140)
T ss_pred ccccCCchHHHHHHHHHHh----hhcceEEecCcHHHH-hHHHHhhcchHhHhhCcchhhhhHHHHH
Confidence 7655443322 1112221 124567887766543 4456778999999999999999988553
No 165
>PRK05218 heat shock protein 90; Provisional
Probab=88.00 E-value=1.8 Score=54.31 Aligned_cols=57 Identities=14% Similarity=0.339 Sum_probs=36.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccC-----------C-CCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQG-----------D-PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~-----------~-~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|+|.|||+||+.+++..-|...-.. + .....-.|-.|+|+.=| =+.+-++.|.|+.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcC
Confidence 38999999999999999876433221 0 00112235678998532 2335678888865
No 166
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=87.94 E-value=0.84 Score=57.79 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 627 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 627 (1120)
|+.-|.+++.-||.||+.-...| .|.|.+. .++ .
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~---------------------------------------~~g----~ 63 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN---------------------------------------DDG----S 63 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe---------------------------------------CCC----c
Confidence 55678999999999999843334 4444321 122 2
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccCC----CCCCCCCCCccchHHHHHHHHH
Q 001222 628 FEVDDTGCGIDQSKWE--------TVFESFEQGD----PSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l~--------~IFe~F~q~~----~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
|+|.|+|.|||.+.-+ -||.-..-+. .......|-.|.||+.+..+-+
T Consensus 64 I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 64 VTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred EEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 8999999999987422 2343211111 1111122337999999988876
No 167
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.84 E-value=1.8 Score=43.06 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEe
Q 001222 557 QIFSNLINNSIKFTSSGHIIIRGW 580 (1120)
Q Consensus 557 QIL~NLL~NAIKfT~~G~v~v~~~ 580 (1120)
-+..-||.||+||...|.|+|.+.
T Consensus 66 Yl~NELiENAVKfra~geIvieas 89 (184)
T COG5381 66 YLANELIENAVKFRATGEIVIEAS 89 (184)
T ss_pred HHHHHHHHhhhcccCCCcEEEEEE
Confidence 467789999999999999988764
No 168
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=86.60 E-value=12 Score=37.43 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC--HH
Q 001222 973 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD--GY 1047 (1120)
Q Consensus 973 ~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md--G~ 1047 (1120)
+..-..++..+|+..||+|.-. ...++.+++..+ ..+|+|-+-..|-..- --
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-----------------------~~adiVglS~l~~~~~~~~~ 70 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-----------------------TKADAILVSSLYGHGEIDCK 70 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEecccccCHHHHH
Confidence 4455677889999999999864 455666666643 4799999988774321 22
Q ss_pred HHHHHHHhcccccCCCCcceEEEecc--CCHHH----HHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAH--AMNAD----EKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~--~~~~~----~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
++.+++|+. +...+ .|++-+. ..+++ ..+..+.|+|......-.++++.+.|++.++
T Consensus 71 ~~~~~l~~~----gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 71 GLRQKCDEA----GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHHHHHC----CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 344455543 23344 4556653 12222 3468899999999988899999998887654
No 169
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.36 E-value=17 Score=36.78 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=84.9
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEE---ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSV---VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~---a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
..|||++ |-+..=.+++.+.|+..||+|+. ....+|++++.-+ +..|+|.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-----------------------~dv~vIg 68 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-----------------------EDVDVIG 68 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-----------------------cCCCEEE
Confidence 3566664 77777789999999999999986 5678888876632 3688887
Q ss_pred EeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1037 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1037 mD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+... .....+++..+++.....+..++. +++-+.-.+++..+..+.|+|.++.--.+..+....+...+.
T Consensus 69 vSsl--~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 69 VSSL--DGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred EEec--cchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 7642 223456666666655444545554 466777778888888899999999877777766666555443
No 170
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=86.31 E-value=1.2 Score=55.97 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 627 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 627 (1120)
|+.-|.+++.-||.||+.-...| .|.|.+. .++ .
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~---------------------------------------~~g----~ 70 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN---------------------------------------EDG----S 70 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe---------------------------------------CCC----c
Confidence 56778999999999999844344 4544431 112 4
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccC---CCCCCC-CCCCccchHHHHHHHHH
Q 001222 628 FEVDDTGCGIDQSKWE--------TVFESFEQG---DPSTTR-KHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l~--------~IFe~F~q~---~~s~~~-~~~GtGLGLaIvk~LVe 675 (1120)
|+|.|+|+|||.+..+ -||.-...+ +....+ ..|=.|.||+.+..+-+
T Consensus 71 I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 71 ITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred EEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 8999999999997433 244332111 111111 22346999999988877
No 171
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=85.91 E-value=13 Score=36.97 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-CH-H
Q 001222 973 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-DG-Y 1047 (1120)
Q Consensus 973 ~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m-dG-~ 1047 (1120)
+..-..++..+|+..||+|.-. ...++.+++..+ +.+|+|.+-..|... .. -
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-----------------------~~adiVglS~L~t~~~~~~~ 68 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-----------------------TDADAILVSSLYGHGEIDCK 68 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEeccccCCHHHHH
Confidence 4455678888999999999863 445666666543 479999998877543 22 3
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccC--C----HHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHA--M----NADEKKCLGVGMNAYLTKPIDSERMVSTIL 1105 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~--~----~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1105 (1120)
++.+.+|+. +..++||+ +-+.. . .++..+..+.|+|......-+++++...|+
T Consensus 69 ~~~~~l~~~----gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 69 GLREKCDEA----GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred HHHHHHHHC----CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 445555543 23355544 44442 2 334567889999999998888888777654
No 172
>PRK14083 HSP90 family protein; Provisional
Probab=85.83 E-value=0.93 Score=56.47 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCChhhHhhhhcccc----cCC---CCCCCCCCCccchHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFE----QGD---PSTTRKHGGTGLGLSIVRT 672 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~----q~~---~s~~~~~~GtGLGLaIvk~ 672 (1120)
.|+|.|||+||+.+++.+.|-..- +.. .......|..|+|+.-|-.
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~ 116 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL 116 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE
Confidence 579999999999999998763221 110 0011223677888765543
No 173
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.35 E-value=8 Score=42.46 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=62.6
Q ss_pred HHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC----------CCCHHHHH
Q 001222 983 ILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----------KMDGYEAT 1050 (1120)
Q Consensus 983 ~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP----------~mdG~e~~ 1050 (1120)
.|-+.||.|. ++.|...|-.+.+ -.+++| || ..+ .+.+
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~------------------------~G~~~v-----mPlg~pIGsg~Gi~~-~~~I 167 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLED------------------------AGCAAV-----MPLGSPIGSGQGLLN-PYNL 167 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHH------------------------cCCCEe-----CCCCcCCCCCCCCCC-HHHH
Confidence 3445699987 4455555555443 157777 77 123 7888
Q ss_pred HHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 001222 1051 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1051 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1108 (1120)
+.|++. ..+|||+=.+-..++|..+|++.|+|+.+. |.-++..+..+....+
T Consensus 168 ~~I~e~------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 168 RIIIER------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred HHHHHh------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 888864 248999888889999999999999999974 5445666666655444
No 174
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=85.14 E-value=1 Score=56.74 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGD 653 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~ 653 (1120)
.|.|.|+|+||++++++-.+.++...+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 388999999999999999999987543
No 175
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.92 E-value=8.6 Score=42.27 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=62.5
Q ss_pred HHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC----------CCCHHHHH
Q 001222 983 ILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----------KMDGYEAT 1050 (1120)
Q Consensus 983 ~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP----------~mdG~e~~ 1050 (1120)
.|-+.||.|. +++|..+|-.+.. -.+|+| || ..+ .+.+
T Consensus 118 ~L~~~Gf~vlpyc~~d~~~ak~l~~------------------------~G~~~v-----mPlg~pIGsg~gi~~-~~~i 167 (250)
T PRK00208 118 ILVKEGFVVLPYCTDDPVLAKRLEE------------------------AGCAAV-----MPLGAPIGSGLGLLN-PYNL 167 (250)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHH------------------------cCCCEe-----CCCCcCCCCCCCCCC-HHHH
Confidence 3445699987 4556655555443 157777 66 123 6778
Q ss_pred HHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 001222 1051 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1051 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1108 (1120)
+.|++. .++|||+=.+-..++|..+|++.|+|+.+. |--++..+..+....+
T Consensus 168 ~~i~e~------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 168 RIIIEQ------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred HHHHHh------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 888874 248999988889999999999999999974 5445666665555443
No 176
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=84.06 E-value=7.5 Score=37.52 Aligned_cols=93 Identities=27% Similarity=0.355 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC-CCCCCC-HH
Q 001222 973 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC-QMPKMD-GY 1047 (1120)
Q Consensus 973 ~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~-~MP~md-G~ 1047 (1120)
.+.-...+..+|++.|++|... .+.++..+.+.+ ..||+|.+.+ ..+... ..
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-----------------------~~pd~V~iS~~~~~~~~~~~ 69 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-----------------------ERPDVVGISVSMTPNLPEAK 69 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-----------------------TTCSEEEEEESSSTHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-----------------------CCCcEEEEEccCcCcHHHHH
Confidence 3556778899999999999877 334555565543 3799999998 444432 35
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHH--cCCCEEEECC
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG--VGMNAYLTKP 1094 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KP 1094 (1120)
++++.+|+.. ++++||+=-.+. ...-+.+++ .|+|..+.-.
T Consensus 70 ~l~~~~k~~~-----p~~~iv~GG~~~-t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 70 RLARAIKERN-----PNIPIVVGGPHA-TADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHHTTC-----TTSEEEEEESSS-GHHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHHhcC-----CCCEEEEECCch-hcChHHHhccCcCcceecCCC
Confidence 5666666532 345555544443 445556665 7999877654
No 177
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=83.77 E-value=20 Score=33.38 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=72.2
Q ss_pred EEeecChhhHHHHHHHHHhcCc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEE
Q 001222 719 VLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 797 (1120)
Q Consensus 719 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 797 (1120)
++.......+..+..++...|+ .+..+.....+...+.. .+..++
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~----------------------------------~~~d~i 47 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK----------------------------------HPPDLI 47 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH----------------------------------STESEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc----------------------------------cCceEE
Confidence 4566777888889999998888 66666655544433321 235788
Q ss_pred EEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHH
Q 001222 798 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLL 865 (1120)
Q Consensus 798 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l 865 (1120)
++|..+.+.+....-+.++. ......+..+. .........+..+.|..-++.||+....+.+.+
T Consensus 48 iid~~~~~~~~~~~~~~i~~---~~~~~~ii~~t-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 48 IIDLELPDGDGLELLEQIRQ---INPSIPIIVVT-DEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEESSSSSSBHHHHHHHHHH---HTTTSEEEEEE-SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred EEEeeecccccccccccccc---ccccccEEEec-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 99998888776544444432 22333343343 334445566677899999999999998887764
No 178
>PRK11677 hypothetical protein; Provisional
Probab=81.01 E-value=16 Score=36.51 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHH
Q 001222 395 CILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 474 (1120)
Q Consensus 395 ~~~li~~l~~~~l~~~i~~~~~l~~~l~~~~~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~ 474 (1120)
+.+++|+++++++.+...+..+...++..+++..+ .+.+++|.+.....+ -.++++. .+....+
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k--~ele~YkqeV~~HFa-----------~TA~Ll~---~L~~~Y~ 71 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNK--AELEEYRQELVSHFA-----------RSAELLD---TMAKDYR 71 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHH
Confidence 34445555555555544444444444444433322 333445554433332 2334443 1345555
Q ss_pred HHHHHHHHHHHHHH
Q 001222 475 STVCQIKKSSYALL 488 (1120)
Q Consensus 475 ~~l~~I~~s~~~L~ 488 (1120)
+....+.+++.+|+
T Consensus 72 ~Ly~HlA~~s~~Ll 85 (134)
T PRK11677 72 QLYQHMAKSSSELL 85 (134)
T ss_pred HHHHHHHHHHHHHc
Confidence 55666666666554
No 179
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.19 E-value=19 Score=38.63 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=67.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 965 LRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 965 ~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
.+||+. |-+..=..++..+|+..||+|.-.. ..++.++.+.+ ..||+|-+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----------------------~~~d~v~l 139 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----------------------HKPDILGL 139 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 478887 7777778888999999999988543 34566666643 47999999
Q ss_pred eCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1038 DCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1038 D~~MP~m--dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-+.|+.. +--++.+.+|+... ..+++|++=-+... .+ -+-+.|+|.|-.
T Consensus 140 S~~~~~~~~~~~~~i~~lr~~~~---~~~~~i~vGG~~~~-~~--~~~~~GaD~~~~ 190 (201)
T cd02070 140 SALMTTTMGGMKEVIEALKEAGL---RDKVKVMVGGAPVN-QE--FADEIGADGYAE 190 (201)
T ss_pred eccccccHHHHHHHHHHHHHCCC---CcCCeEEEECCcCC-HH--HHHHcCCcEEEC
Confidence 9988764 23455666666422 12466665444433 33 466779999975
No 180
>PTZ00130 heat shock protein 90; Provisional
Probab=78.82 E-value=2.9 Score=53.35 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCChhhHhhhhc--------ccc---cCCCCCCCCCCCccchHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWETVFE--------SFE---QGDPSTTRKHGGTGLGLSIVRT 672 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe--------~F~---q~~~s~~~~~~GtGLGLaIvk~ 672 (1120)
.|+|.|||+||+.+++..-+- .|. +.......-.|-.|+|++-|--
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm 192 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL 192 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee
Confidence 478999999999999764331 121 1101112234678999987643
No 181
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=78.11 E-value=17 Score=46.23 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=65.4
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001222 966 RILLAEDTP-LI-----QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1039 (1120)
Q Consensus 966 ~ILIVdD~~-~n-----~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~ 1039 (1120)
+|+||+++. .+ .+.|..-|++.|++|..+.+..+++..++. ....+.|++|.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 59 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH----------------------NPRICGVIFDW 59 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc----------------------ccceeEEEEec
Confidence 567776663 22 345666788899999999999999998863 24688999995
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECC
Q 001222 1040 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1094 (1120)
Q Consensus 1040 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1094 (1120)
+-. ..++++.||+.. ..+||+++.......+.-...-.-.++|+..-
T Consensus 60 ~~~---~~~~~~~~~~~~-----~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (713)
T PRK15399 60 DEY---SLDLCSDINQLN-----EYLPLYAFINTHSTMDVSVQDMRMALWFFEYA 106 (713)
T ss_pred ccc---hHHHHHHHHHhC-----CCCCEEEEcCccccccCChhHhhhcceeeeec
Confidence 322 355888888753 36999999875433322222222345555543
No 182
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=75.88 E-value=2.8 Score=53.05 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.8
Q ss_pred EEEEEeCCCCCChhhHhhhh
Q 001222 627 CFEVDDTGCGIDQSKWETVF 646 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IF 646 (1120)
.++|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 57999999999999876544
No 183
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=75.70 E-value=19 Score=45.79 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=56.3
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001222 966 RILLAEDTP-LI-----QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1039 (1120)
Q Consensus 966 ~ILIVdD~~-~n-----~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~ 1039 (1120)
+||+++++. .+ .+.|..-|++.|++|..+.+..+++..++. ....+.|+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 59 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN----------------------NARLCGVIFDW 59 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------------------ccceeEEEEec
Confidence 466665552 11 345667788999999999999999998863 24688899984
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccC
Q 001222 1040 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1074 (1120)
Q Consensus 1040 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~ 1074 (1120)
+- . ..++++.||+.. ..+||+++....
T Consensus 60 ~~--~-~~~~~~~~~~~~-----~~~Pv~~~~~~~ 86 (714)
T PRK15400 60 DK--Y-NLELCEEISKMN-----ENLPLYAFANTY 86 (714)
T ss_pred ch--h-hHHHHHHHHHhC-----CCCCEEEEcccc
Confidence 22 1 245888888753 369999998754
No 184
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=75.61 E-value=35 Score=37.43 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=81.1
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEE
Q 001222 718 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 797 (1120)
Q Consensus 718 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 797 (1120)
+++..+...-+..+..++...|..+..+.......... ... ++++
T Consensus 3 ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~----------------------------------~~~-~dlv 47 (229)
T COG0745 3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA----------------------------------REQ-PDLV 47 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH----------------------------------hcC-CCEE
Confidence 45666777777888999999998877766543222111 112 6789
Q ss_pred EEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 798 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 798 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++|+.++++++..+...++.. ........+.+..+....+...-..|.+-+++|||....+..-+...++.
T Consensus 48 iLD~~lP~~dG~~~~~~iR~~---~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 48 LLDLMLPDLDGLELCRRLRAK---KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred EEECCCCCCCHHHHHHHHHhh---cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 999999999986655544422 22333356666666666677777889999999999999998888777664
No 185
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=73.39 E-value=29 Score=44.45 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=79.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 965 LRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 965 ~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
.+|+++ |.+..-...+..+|+..||+|..- .+.+++++++.+ ..+|+|.+
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-----------------------~~a~ivvl 639 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-----------------------NDVHVVGV 639 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 355543 344555667888999999999643 346677777753 37899988
Q ss_pred eCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1038 DCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1038 D~~MP~m--dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
...|... ..-++++.+|+.. ..+++| ++.+...+++...+.++|+|+|+..-.+..+.+..+.+.+.
T Consensus 640 cs~d~~~~e~~~~l~~~Lk~~G----~~~v~v-l~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 640 SSLAAGHKTLVPALIEALKKLG----REDIMV-VVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred eccchhhHHHHHHHHHHHHhcC----CCCcEE-EEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 7665433 2346677777642 123433 35555455566778899999999999999988888877663
No 186
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=72.94 E-value=29 Score=37.61 Aligned_cols=101 Identities=19% Similarity=0.116 Sum_probs=67.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 965 LRILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 965 ~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
.+|++. |.+..=..++..+|+..||+|.-... .++.++.+.+ ..||+|.+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-----------------------~~~~~V~l 145 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-----------------------HKADIIGL 145 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 478887 78888888889999999999987543 4555565543 47999999
Q ss_pred eCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHH---HHHcCCCEEEEC
Q 001222 1038 DCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK---CLGVGMNAYLTK 1093 (1120)
Q Consensus 1038 D~~MP~m-d-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~K 1093 (1120)
-+.|+.. . --++.+++|+.. .+++|++--+-...+...+ |-..|+|.|-.=
T Consensus 146 S~~~~~~~~~~~~~i~~L~~~~-----~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 146 SGLLVPSLDEMVEVAEEMNRRG-----IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred ccchhccHHHHHHHHHHHHhcC-----CCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 9998743 2 234555666431 2577665554444433322 345799998753
No 187
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=72.55 E-value=49 Score=35.32 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=51.5
Q ss_pred CccEEEEeCCCCCC--------CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCH
Q 001222 1031 RFDLILMDCQMPKM--------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDS 1097 (1120)
Q Consensus 1031 ~~DlILmD~~MP~m--------dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~ 1097 (1120)
..|+|...--.|.. .|++.++++++.. .++||++.-+- +.++..+++++|+|.+.. +.-++
T Consensus 124 gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 124 GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-----GDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDP 197 (212)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-----CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCH
Confidence 68999887555533 3688888888642 24899987766 578888999999999985 54456
Q ss_pred HHHHHHHHHHhh
Q 001222 1098 ERMVSTILRLTK 1109 (1120)
Q Consensus 1098 ~~L~~~I~~l~~ 1109 (1120)
.+....+.+.++
T Consensus 198 ~~~~~~l~~~~~ 209 (212)
T PRK00043 198 EAAARALLAAFR 209 (212)
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 188
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=71.42 E-value=4.8 Score=50.45 Aligned_cols=48 Identities=27% Similarity=0.440 Sum_probs=28.2
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCC---C-CCCCCCCccchHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWE--------TVFESFEQGDP---S-TTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~~~---s-~~~~~~GtGLGLaIvk~LV 674 (1120)
.|+|.|+|.|||-+..+ -||.....+.. . .....|-.|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976533 23432221111 1 1111234699999988774
No 189
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=68.86 E-value=84 Score=35.19 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=61.8
Q ss_pred EEEeC-CHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe---CCCC
Q 001222 968 LLAED-TPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMP 1042 (1120)
Q Consensus 968 LIVdD-~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD---~~MP 1042 (1120)
|++.+ ++.....+....+.+|.++. .+.|.+|+..+.+. .+|+|-.. ..--
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~------------------------gadiIgin~rdl~~~ 194 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL------------------------GAPLIGINNRNLKTF 194 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc------------------------CCCEEEECCCCcccc
Confidence 34444 33334444455566788754 57888887655531 46766542 1112
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..| ++.+.++....+ ...|+|+.++-.+.++..+++++|+|.++.
T Consensus 195 ~~d-~~~~~~l~~~~p----~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 195 EVD-LETTERLAPLIP----SDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred cCC-HHHHHHHHHhCC----CCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 223 667777776432 136899999999999999999999999764
No 190
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.10 E-value=1.7e+02 Score=30.31 Aligned_cols=185 Identities=17% Similarity=0.200 Sum_probs=106.2
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHH
Q 001222 441 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 520 (1120)
Q Consensus 441 Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~~ 520 (1120)
+-+.+.||+=.|..+|..-+|+|.+.. -++ +....|+.++..+. +.|.|.|+--|.-----..||-.+. +.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~-add---DAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgea-ek 88 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGG-ADD---DAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEA-EK 88 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCC-ccH---HHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhH-HH
Confidence 456799999999999999999986433 232 34556777776654 5678999887654333345665443 33
Q ss_pred HHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCcccccc
Q 001222 521 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 600 (1120)
Q Consensus 521 v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~ 600 (1120)
+...| .+.+| -++....+.. ...+++. ..+.||+-=|--.-|.|+..+.. .++..
T Consensus 89 ~A~~~--~a~ek-pe~~W~g~r~-----~~~Kn~v-kllLNl~lia~~aiPrGG~~~vt-le~~e--------------- 143 (214)
T COG5385 89 AAQDF--FANEK-PELTWNGPRA-----ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVT-LENPE--------------- 143 (214)
T ss_pred HHHHH--HhccC-CcccccCChh-----hcCcchH-HHHHHHHHHHcccCCCCCeeEEE-eecCC---------------
Confidence 33222 12233 4555544322 1233343 45778887777777887744322 11110
Q ss_pred chhhhhhhhhhhccccccccCCceEEEEEEEeCCC--CCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcC
Q 001222 601 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC--GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 678 (1120)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~--GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mG 678 (1120)
.+ -+|+|.-.|. -.|++.++-+ .+.+. ...-++.-.-=+..--|++.-|
T Consensus 144 -------------------~d----~rfsi~akG~m~Rvppk~lel~-----~G~~~-eE~vdahsVQpyYt~lLa~eAg 194 (214)
T COG5385 144 -------------------TD----ARFSIIAKGRMMRVPPKFLELH-----SGEPP-EEAVDAHSVQPYYTLLLAEEAG 194 (214)
T ss_pred -------------------cC----ceEEEEecCccccCCHHHHhhh-----cCCCc-cccCCCccccHHHHHHHHHHcC
Confidence 11 2355555555 3466655532 12211 1112334445567778899999
Q ss_pred CEEEEEEeCC
Q 001222 679 GEIKVVKKNS 688 (1120)
Q Consensus 679 G~I~v~S~~g 688 (1120)
++|.|+....
T Consensus 195 m~I~v~~~~e 204 (214)
T COG5385 195 MTISVHATAE 204 (214)
T ss_pred CeEEEEeccc
Confidence 9999987654
No 191
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=63.87 E-value=70 Score=34.67 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=41.7
Q ss_pred CccEEEEeCC-------CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQ-------MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~-------MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|+|..... .+...+++++++||+.. ++||++..+-.+.++..+++++|+|.++.
T Consensus 139 G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~------~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 139 GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV------GCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC------CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 5787754311 12233578889998742 48999988888899999999999999875
No 192
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=60.11 E-value=93 Score=34.79 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=53.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHH
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRL 1107 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l 1107 (1120)
.||.|++|++=-.+|--++...||..... .-.|+|=+ ...+.....+++++|+++.+.==+ +.++....+..+
T Consensus 40 G~D~v~iD~EHg~~~~~~~~~~i~a~~~~---g~~~lVRv-p~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 40 GFDWLVLDGEHAPNDVSTFIPQLMALKGS---ASAPVVRV-PTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHhhc---CCCcEEEC-CCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 69999999999999988888888875432 22455555 455778899999999999988444 555555555443
No 193
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=59.24 E-value=15 Score=45.45 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCChhhHhhhh--------cccccC---CCCCCCCCCCccchHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWETVF--------ESFEQG---DPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IF--------e~F~q~---~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
.++|+|||+||..+++..-- ..|.+. +.....--|-.|+|++-|--++
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeee
Confidence 47899999999998875422 112111 1111122367899998765444
No 194
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.04 E-value=82 Score=31.31 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 001222 469 LTNEQYSTVCQIKKSSYALL 488 (1120)
Q Consensus 469 l~~~~~~~l~~I~~s~~~L~ 488 (1120)
+....++....+.+++.+|+
T Consensus 62 l~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 62 LTQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455556666777777664
No 195
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=58.94 E-value=87 Score=34.38 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCEEEEE--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHH
Q 001222 978 IVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEAT 1050 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~~a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-----~e~~ 1050 (1120)
....+.|-+.||.|... .|..-|-++.+- .. -.+|=+--|...| -+.+
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~------------------------Gc-aavMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTDDPVLAKRLEDA------------------------GC-AAVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT------------------------T--SEBEEBSSSTTT---SSTHHHH
T ss_pred HHHHHHHHHCCCEEeecCCCCHHHHHHHHHC------------------------CC-CEEEecccccccCcCCCCHHHH
Confidence 34456777899998854 444444333321 11 2677777888776 3567
Q ss_pred HHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC-----CCCHHHHHHHHH
Q 001222 1051 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK-----PIDSERMVSTIL 1105 (1120)
Q Consensus 1051 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K-----Pi~~~~L~~~I~ 1105 (1120)
+.|++.. ++|||+=.+-..+++...+++.|+|+.|.- --++-.+..+.+
T Consensus 168 ~~i~~~~------~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~ 221 (247)
T PF05690_consen 168 RIIIERA------DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFK 221 (247)
T ss_dssp HHHHHHG------SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHH
T ss_pred HHHHHhc------CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHH
Confidence 7777642 599999999999999999999999999973 335555555443
No 196
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=58.64 E-value=92 Score=33.86 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=43.8
Q ss_pred Ccc-EEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFD-LILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..| ++++|+.--++ .| +++++++++. .++||++-.+-.+.++..++++.|+|+++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~------~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA------VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 466 78788864332 22 6888888864 258999999999999999999999999875
No 197
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=58.56 E-value=43 Score=35.84 Aligned_cols=98 Identities=8% Similarity=0.084 Sum_probs=61.7
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001222 966 RILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1038 (1120)
Q Consensus 966 ~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD 1038 (1120)
+|++. |.+..-..++..+|+..||+|.-.. ..++.++.+.+ ..||+|.+-
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----------------------~~pd~v~lS 142 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----------------------EKPLMLTGS 142 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEc
Confidence 55553 4556667778888999999999644 34555555543 479999999
Q ss_pred CCCCCCCH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1039 CQMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1039 ~~MP~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.|+..-. -++.+++|+... ..+++|+ +-+..... .-|.+.|+|.|-.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~---~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY---RDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC---CCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 98865422 345556665321 1235544 55544433 3466889999964
No 198
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.19 E-value=96 Score=30.66 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001222 471 NEQYSTVCQIKKSSYALL 488 (1120)
Q Consensus 471 ~~~~~~l~~I~~s~~~L~ 488 (1120)
.+.++....+..++.+|+
T Consensus 73 ~dYqklyqHmA~ss~~Ll 90 (138)
T COG3105 73 QDYQKLYQHMAKSSTSLL 90 (138)
T ss_pred HHHHHHHHHHHhhHhhhC
Confidence 344444555556655543
No 199
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=56.10 E-value=40 Score=38.10 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=53.3
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001222 990 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1069 (1120)
Q Consensus 990 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1069 (1120)
-.+.+.+-+||.++++. .+|+|++| +|+..+=-++.+.+|+.. + -.++.
T Consensus 191 IeVEv~tleea~ea~~~------------------------GaDiI~lD-n~~~e~l~~~v~~l~~~~-----~-~~~le 239 (277)
T TIGR01334 191 ITVEADTIEQALTVLQA------------------------SPDILQLD-KFTPQQLHHLHERLKFFD-----H-IPTLA 239 (277)
T ss_pred EEEECCCHHHHHHHHHc------------------------CcCEEEEC-CCCHHHHHHHHHHHhccC-----C-CEEEE
Confidence 34567899999999853 69999999 566555566666665322 1 23788
Q ss_pred EeccCCHHHHHHHHHcCCCEEE
Q 001222 1070 LTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1070 lTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
.++.-..+......+.|+|-+.
T Consensus 240 asGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 240 AAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EECCCCHHHHHHHHhcCCCEEE
Confidence 8999999999999999998754
No 200
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=56.03 E-value=1.3e+02 Score=33.39 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=53.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHH
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRL 1107 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l 1107 (1120)
.||.|+.|++=-.+|--++...||..... .-.|+|=+ ...+.....+++++|+++.+.==+ +.++....+..+
T Consensus 33 G~D~v~iD~EHg~~~~~~~~~~~~a~~~~---g~~~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 33 GFDWLLLDGEHAPNDVLTFIPQLMALKGS---ASAPVVRP-PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred CCCEEEEecccCCCCHHHHHHHHHHHhhc---CCCcEEEC-CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 69999999999999988888888876432 22455554 556788899999999999988545 455555555433
No 201
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=54.55 E-value=10 Score=48.62 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhccCCC---cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEE
Q 001222 553 GRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFE 629 (1120)
Q Consensus 553 ~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 629 (1120)
.-|..++.-||+|||.-.-.| .|.|.+. .++ .|+
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~---------------------------------------~dg----sIs 72 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIH---------------------------------------ADG----SVS 72 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEc---------------------------------------CCC----eEE
Confidence 458899999999999833334 3444321 122 489
Q ss_pred EEeCCCCCChhhH--------hhhhcccccCC----CCCCCCCCCccchHHHHHHHHH
Q 001222 630 VDDTGCGIDQSKW--------ETVFESFEQGD----PSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 630 V~DtG~GI~~e~l--------~~IFe~F~q~~----~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
|.|+|.|||.+.- +-+|....-+. ....-..|=.|.|++.|..+-+
T Consensus 73 V~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 73 VSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred EEEcCCcccCCcccccCCchhhheeeeecccCCCCCCcccccCCccCccceEeehccC
Confidence 9999999998732 22332111110 0111112336899999888776
No 202
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=54.41 E-value=1.5e+02 Score=32.04 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+++.++++|+.. ++||++..+-.+.++..+++++|+|.++.
T Consensus 164 ~~~~~l~~i~~~~------~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 164 PDFELLKELRKAL------GIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred CCHHHHHHHHHhc------CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4578899998642 48999988888899999999999999886
No 203
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.39 E-value=1.8e+02 Score=33.73 Aligned_cols=98 Identities=14% Similarity=0.032 Sum_probs=62.4
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhcC-CEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001222 966 RILLAED----TPLIQIVACKILEKVG-ATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1038 (1120)
Q Consensus 966 ~ILIVdD----~~~n~~~l~~~L~~~g-~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD 1038 (1120)
.++.+|- ....++.++.+=++.. ..|.. +.+.++|..+.+. ..|.|..-
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a------------------------Gad~i~vg 168 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA------------------------GADATKVG 168 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc------------------------CcCEEEEC
Confidence 6777753 2333334444433333 33443 6788888887753 57776533
Q ss_pred C-------C---CC-CCC--HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1039 C-------Q---MP-KMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1039 ~-------~---MP-~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
. . .. ... ++.+++.+++. .++|||+--+-....|..+|+.+|||.++.=
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAKA------ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 1 1 11 112 56667787753 2589999999999999999999999988753
No 204
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=54.12 E-value=1.5e+02 Score=33.46 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=53.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHhh
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLTK 1109 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~-~~L~~~I~~l~~ 1109 (1120)
.||.|+.|++=-..|--++...||..... .-.|+|=+ ...+.....++|++|+++.+.==++- ++....+ +..+
T Consensus 39 GfD~v~iD~EHg~~~~~~l~~~i~a~~~~---g~~~lVRv-p~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V-~a~r 113 (267)
T PRK10128 39 GYDWLLIDGEHAPNTIQDLYHQLQAIAPY---ASQPVIRP-VEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVV-SATR 113 (267)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHHhc---CCCeEEEC-CCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHH-HhcC
Confidence 69999999999888888888888876532 22455544 45577888999999999999866644 4444444 4443
No 205
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.95 E-value=61 Score=36.90 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=50.9
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001222 990 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1069 (1120)
Q Consensus 990 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1069 (1120)
-.+.+++-+||.+++.. ..|+|++| +|+.-+=-++.+.+|+.. ++ ..+.
T Consensus 202 IeVEv~tl~ea~eal~~------------------------gaDiI~LD-nm~~e~vk~av~~~~~~~-----~~-v~ie 250 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE------------------------GAELVLLD-NFPVWQTQEAVQRRDARA-----PT-VLLE 250 (289)
T ss_pred EEEEcCCHHHHHHHHHc------------------------CCCEEEeC-CCCHHHHHHHHHHHhccC-----CC-EEEE
Confidence 45678999999999853 68999999 455333333444444321 23 3677
Q ss_pred EeccCCHHHHHHHHHcCCCEEEE
Q 001222 1070 LTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1070 lTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.++.-..+...+..+.|+|.+-+
T Consensus 251 aSGGI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 251 SSGGLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EECCCCHHHHHHHHhcCCCEEEe
Confidence 88899999999999999987653
No 206
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=50.53 E-value=2.3e+02 Score=30.46 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+++.++++++..+ ..+|||+..+-...++..+++++|+|+++.
T Consensus 158 ~~~~~~~l~~~~~----~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 158 DLNTTERLAPLIP----KDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CHHHHHHHHHhCC----CCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 4678888886421 258999999999999999999999999974
No 207
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=50.42 E-value=1e+02 Score=32.65 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=55.7
Q ss_pred hcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCC
Q 001222 986 KVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1064 (1120)
Q Consensus 986 ~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ 1064 (1120)
+.|.. +.-+.+.+|+.++.+. .+|+|-++- ++.. |.+.++.+++.. ++
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~~------------------------Gad~i~~~p-~~~~-g~~~~~~l~~~~-----~~ 143 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALEL------------------------GADIVKLFP-AEAV-GPAYIKALKGPF-----PQ 143 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHHC------------------------CCCEEEEcC-Cccc-CHHHHHHHHhhC-----CC
Confidence 34443 3356788998888752 689998864 4444 999999998642 35
Q ss_pred cceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1065 IPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1065 ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
+|+++.-+- +.+...+++++|++..-.-
T Consensus 144 ~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 144 VRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 888887665 7889999999999887654
No 208
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=49.78 E-value=1.7e+02 Score=32.60 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=68.6
Q ss_pred HHHHHHhcCCEEEEEC--CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHHHH
Q 001222 980 ACKILEKVGATVSVVP--DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~~a~--ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-----~e~~~~ 1052 (1120)
..+.|-+.||.|.... |..-|-++.+. =-..+|=+--|...| -..++.
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLed~-------------------------Gc~aVMPlgsPIGSg~Gl~n~~~l~~ 183 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLEDI-------------------------GCATVMPLGSPIGSGQGLQNLLNLQI 183 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHHc-------------------------CCeEEeeccCcccCCCCCCCHHHHHH
Confidence 4456667899988654 44333333321 124677777787765 346777
Q ss_pred HHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 001222 1053 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1053 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1108 (1120)
|++. .++|||.=.+-..++|..++++.|+|+.+. |--++.+|..+++...
T Consensus 184 i~e~------~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 184 IIEN------AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred HHHc------CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 7763 359999999999999999999999999864 5567788887776543
No 209
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=49.74 E-value=1.5e+02 Score=36.03 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=80.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.++...-|..+.+++...|..+..+.........+. ..++.+
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~----------------------------------~~~~~l 51 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS----------------------------------ESPFDL 51 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCCCCE
Confidence 4677777888889999999999988877776655443321 124678
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++.|+.++++++-.+-+.+.. .... ..+.+.+...+-+..-+..+.|.--++.||+...++..++..+...
T Consensus 52 vl~Di~mp~~~Gl~ll~~i~~---~~~~-~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 52 VLLDIRMPGMDGLELLKEIKS---RDPD-LPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred EEEecCCCCCchHHHHHHHHh---hCCC-CCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 999999999987544333322 1222 2333444333334455677788888999999999999988887764
No 210
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=48.35 E-value=62 Score=34.21 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCE---EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGAT---VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~---v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.+|..||-++.....+++-+++.|.. .....|...++..+.. ....||+|++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------------------~~~~fDiIflDP-- 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------------------KGEKFDIIFLDP-- 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------------------CTS-EEEEEE----
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------------------cCCCceEEEECC--
Confidence 48999999999999999999998853 4456777777766532 135899999994
Q ss_pred CCCCH---HHHHHHHHh
Q 001222 1042 PKMDG---YEATIEIRK 1055 (1120)
Q Consensus 1042 P~mdG---~e~~~~IR~ 1055 (1120)
|-..+ .+++..|.+
T Consensus 123 PY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 123 PYAKGLYYEELLELLAE 139 (183)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHH
Confidence 55444 346666653
No 211
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=47.82 E-value=85 Score=34.55 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=46.0
Q ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~m--dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|-.|...|+. --++++++|++.. ..+|||+--+-.+.++..+++++|+|..+.
T Consensus 161 Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~-----~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 161 GFDGIHVDAMYPGKPYADMDLLKILSEEF-----NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCCEEEEeeCCCCCchhhHHHHHHHHHhc-----CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 68888889877764 2478888888642 248999998889999999999999999864
No 212
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.57 E-value=52 Score=36.82 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecc------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+.++.++++|+.. .++|+|++|=. ..+....+|.++|+|+.|.=.+.+++....+..+-+
T Consensus 75 ~~~~~~~~~r~~~-----~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 75 DVFELVREIREKD-----PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 5688899998432 35899998833 445568899999999999988888887776655543
No 213
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=47.52 E-value=68 Score=36.12 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhcccccCCCCcceE--EEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~~ 1111 (1120)
.|+++++++++. ..+||| +..+-..+++..++++.|+|.++. +.-++.+....+...+.+.
T Consensus 181 ~d~elLk~l~~~------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 181 APYELVKETAKL------GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCHHHHHHHHHh------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 478888888864 248997 777777999999999999999864 3335666666666666543
No 214
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.48 E-value=2.4e+02 Score=29.72 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCEEE----EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC-----CCCCCCHHH
Q 001222 978 IVACKILEKVGATVS----VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC-----QMPKMDGYE 1048 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~----~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~-----~MP~mdG~e 1048 (1120)
..+.+..++.|..+. .+.+..+++.++. ...|.|.... ......+.+
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~------------------------~~~d~v~~~~~~~~~~~~~~~~~~ 148 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK------------------------LGVDIVILHRGIDAQAAGGWWPED 148 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH------------------------CCCCEEEEcCcccccccCCCCCHH
Confidence 344455666787655 4457777776443 2578877642 111245677
Q ss_pred HHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1049 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1049 ~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.++++++. .++||++.- -.+.+...+++++|+|.++.
T Consensus 149 ~i~~~~~~------~~~~i~~~G-GI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 149 DLKKVKKL------LGVKVAVAG-GITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HHHHHHhh------cCCCEEEEC-CcCHHHHHHHHhcCCCEEEE
Confidence 78888764 247776544 44688999999999998764
No 215
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=47.33 E-value=64 Score=36.38 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhcccccCCCCcceE--EEeccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL-----~KPi~~~~L~~~I~~l~~~ 1110 (1120)
-|+++++++++. ..+||| +..+-.++++...+++.|+|.+. +|.=++++....+...+..
T Consensus 184 ~~~elLkei~~~------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKL------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHh------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578888888864 248998 77777899999999999999986 4544666666666555543
No 216
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.10 E-value=18 Score=48.04 Aligned_cols=80 Identities=18% Similarity=0.359 Sum_probs=63.5
Q ss_pred CCCcceeeeeeecccC-cccccccccccCCCCC--------CCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcc
Q 001222 214 PDGVASWHVAVSKFTN-SPLLSAALPVWDPTTS--------NKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEG 284 (1120)
Q Consensus 214 ~~~~~~w~~~~~~~~~-~~~~~~~~pv~~~~~~--------~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G 284 (1120)
.+-.++|+.++....+ .+++....||+|.... +..++||+|+++.+..+.++.-..+.+..|+.|+.+..|
T Consensus 422 ~~~pv~wt~vy~~~~~~~~i~~~~~pv~~~~~~~~~~~~~~~~~~lgV~~~dvpv~ei~k~~~~~~lg~~gy~f~vd~nG 501 (1104)
T KOG2353|consen 422 EAHPVTWTQVYTDLLYLGLIVTVSLPVFNRTQRHVRVQNTSNQLLLGVVGTDVPVKEIKKLTPPYKLGLNGYFFAVDNNG 501 (1104)
T ss_pred ccCCceeeehhhhhccCcceEecccCcccchhhhhhhcccccceEEEEEecccCHHHHhhcCCccccCCCceEEEecCCc
Confidence 4445689988766554 4467777899886543 234789999999999999999888999999999999999
Q ss_pred eEEEecCCC
Q 001222 285 YLLATSTNA 293 (1120)
Q Consensus 285 ~ll~~s~~~ 293 (1120)
++++++.-.
T Consensus 502 ~vl~HP~l~ 510 (1104)
T KOG2353|consen 502 YVLLHPQLR 510 (1104)
T ss_pred cEEecCccc
Confidence 999887644
No 217
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=46.68 E-value=27 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhhHhhhhcccccC
Q 001222 628 FEVDDTGCGIDQSKWETVFESFEQG 652 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l~~IFe~F~q~ 652 (1120)
+.|+|+|.||-.++++-+.|+|...
T Consensus 59 lQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 59 LQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEecCCCccchhhhHHHHHHhhhh
Confidence 6789999999999999999999743
No 218
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=46.29 E-value=2.1e+02 Score=27.13 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=31.8
Q ss_pred cceEEEeccCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHhh
Q 001222 1065 IPIVALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMVSTILRLTK 1109 (1120)
Q Consensus 1065 ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi--~~~~L~~~I~~l~~ 1109 (1120)
+-+|+.-.....+...+|+++|.+=|+-||+ +.+++.+.+...-+
T Consensus 65 ~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 65 AVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp EEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3333333345566778999999999999999 77777776655443
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.16 E-value=1.8e+02 Score=35.02 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=63.1
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPLI---QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~n---~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|.+|+-++.- ...+...-+..|..+..+.+..+....+... ..+|+||.|.
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~----------------------~~~DlVlIDt- 307 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL----------------------RDCDVILIDT- 307 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh----------------------CCCCEEEEeC-
Confidence 5789999988741 2334444455788888888877666666532 3699999996
Q ss_pred CCCCCHH--HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHH----HcCCCEEEECCCCH
Q 001222 1041 MPKMDGY--EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPIDS 1097 (1120)
Q Consensus 1041 MP~mdG~--e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KPi~~ 1097 (1120)
|++... ..+..+++.-.....+.-..+++++.....+..+.. ..|.+.+|.--++.
T Consensus 308 -~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDe 369 (424)
T PRK05703 308 -AGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDE 369 (424)
T ss_pred -CCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccc
Confidence 333222 222333332111111223367788877776665443 34676665444443
No 220
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=45.58 E-value=2.5e+02 Score=31.23 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=53.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHh
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-KPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KPi~~~~L~~~I~~l~ 1108 (1120)
.||.|+.|++=-.+|--++...||..... ...|+|=+-+ .+..+..+++++|+++.+. |--+.++....+..+.
T Consensus 33 g~D~v~iDlEH~~~~~~~~~~~~~a~~~~---g~~~~VRv~~-~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 33 GFDWLLIDGEHAPNDVRTILSQLQALAPY---PSSPVVRPAI-GDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHhc---CCCcEEECCC-CCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 69999999998888888888888765321 1245555544 4567899999999998876 4446677666655544
No 221
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=45.32 E-value=1.7e+02 Score=33.57 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC---CC--CCCHHHHHHHH
Q 001222 980 ACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---MP--KMDGYEATIEI 1053 (1120)
Q Consensus 980 l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~---MP--~mdG~e~~~~I 1053 (1120)
+...+++.|..|. .+.+.++|..+.+. ..|.|+..-. .. ...-+++++++
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~------------------------GaD~Ivv~g~eagGh~g~~~~~~ll~~v 156 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA------------------------GADAVIAEGMESGGHIGELTTMALVPQV 156 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc------------------------CCCEEEEECcccCCCCCCCcHHHHHHHH
Confidence 4456677787654 46788877666542 5888887432 21 22347888888
Q ss_pred HhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1054 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1054 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++. .++|||+--+-.+.++..+|+..|+|+.+.
T Consensus 157 ~~~------~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 157 VDA------VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred HHH------hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 863 248999999899999999999999998864
No 222
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=44.74 E-value=1.6e+02 Score=38.97 Aligned_cols=120 Identities=14% Similarity=0.062 Sum_probs=78.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..++++++....+..+...+...|..+..+.........+ ...+++
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~----------------------------------~~~~~d 736 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELG----------------------------------RQHRFD 736 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH----------------------------------hcCCCC
Confidence 4678888888899999999998888776655444332211 113457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
++++|..++++++....+.++.............+..............+.|.+..+.||+....+...+....
T Consensus 737 lil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 737 LVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 88999999999876555544432111111122233333344455566777899999999999999888876654
No 223
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.30 E-value=3.1e+02 Score=27.23 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001222 480 IKKSSYALLRLLNRILD 496 (1120)
Q Consensus 480 I~~s~~~L~~LIndiLd 496 (1120)
..++++-+..|.+|--+
T Consensus 61 Fa~sAeLlktl~~dYqk 77 (138)
T COG3105 61 FARSAELLKTLAQDYQK 77 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 224
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=44.11 E-value=71 Score=32.31 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=45.4
Q ss_pred cccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEEC----CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 961 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP----DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 961 ~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~----ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
.+.|.+|+|+.......+-+..+|.+.|++|..+. |.++++. .-|+|+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----------------------------~ADIVv 76 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----------------------------DADVVV 76 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----------------------------hCCEEE
Confidence 35688999999999999999999999999999998 5444322 469999
Q ss_pred EeCCCCC
Q 001222 1037 MDCQMPK 1043 (1120)
Q Consensus 1037 mD~~MP~ 1043 (1120)
.-..-|.
T Consensus 77 sAtg~~~ 83 (140)
T cd05212 77 VGSPKPE 83 (140)
T ss_pred EecCCCC
Confidence 9887764
No 225
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.95 E-value=1.5e+02 Score=27.57 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEE--CCHHH-HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVV--PDGLQ-AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a--~ng~e-Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+||||-..+.+...++..+++.|++.... .++.+ ....+... -...|+|++=...
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~---------------------i~~aD~VIv~t~~- 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK---------------------IKKADLVIVFTDY- 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh---------------------cCCCCEEEEEeCC-
Confidence 48999998888899999999999998888 22222 21123221 1357988764322
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHH
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1083 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l 1083 (1120)
-+-.++..+++.... .++|++..-..+- ....+++
T Consensus 59 --vsH~~~~~vk~~akk---~~ip~~~~~~~~~-~~l~~~l 93 (97)
T PF10087_consen 59 --VSHNAMWKVKKAAKK---YGIPIIYSRSRGV-SSLERAL 93 (97)
T ss_pred --cChHHHHHHHHHHHH---cCCcEEEECCCCH-HHHHHHH
Confidence 356677777776554 3589998764433 3444444
No 226
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.82 E-value=2.3e+02 Score=31.26 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCEEEEECCHHH---HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC------CHH
Q 001222 977 QIVACKILEKVGATVSVVPDGLQ---AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM------DGY 1047 (1120)
Q Consensus 977 ~~~l~~~L~~~g~~v~~a~ng~e---Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m------dG~ 1047 (1120)
...+...+++.|.++..+-+... .++.+.. ....+++| -.+|+- +-.
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-----------------------~~~~~l~m-sv~~~~g~~~~~~~~ 173 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-----------------------LSPLFIYY-GLRPATGVPLPVSVE 173 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-----------------------hCCCEEEE-EeCCCCCCCchHHHH
Confidence 44566777889988777665533 3333322 24577778 456663 224
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECC
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1094 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1094 (1120)
+.++++|+... ..||++=.+-...++..++.++|+|.++.=-
T Consensus 174 ~~i~~lr~~~~-----~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 174 RNIKRVRNLVG-----NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHHhcC-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 56777776532 3565543333478888899999999998753
No 227
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=43.68 E-value=94 Score=33.79 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=44.1
Q ss_pred Ccc-EEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcC-CCEEEE
Q 001222 1031 RFD-LILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLT 1092 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~ 1092 (1120)
.++ ++++|+..-++ .| +++++++++. .++|||+-.+-.+.+|..++++.| +++.+.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~------~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAA------VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 455 89998865332 34 6888888864 248999999999999999999998 999875
No 228
>PLN02591 tryptophan synthase
Probab=43.62 E-value=58 Score=36.28 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecc------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+.++.++++|+. .++|+|+||=. ..+....+|.++|+|+.|.=.+..++.......+-+
T Consensus 65 ~~~~~~~~~r~~------~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQ------LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcC------CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 568889999842 25898888853 334567889999999999999998888777666544
No 229
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.36 E-value=1.1e+02 Score=33.76 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=44.9
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1032 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1032 ~DlILmD~~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-.+|++|+..-++ .| +++++++++. .++|||+-.+-.+.++..++++.|++..+.
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~------~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA------TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3699999987554 33 6677888763 258999999999999999999999999886
No 230
>PRK11677 hypothetical protein; Provisional
Probab=43.01 E-value=3.1e+02 Score=27.57 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH
Q 001222 387 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDA----RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 462 (1120)
Q Consensus 387 ~~~~~~~i~~~li~~l~~~~l~~~i~~~~~l~~~l~~~~~a----~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~el 462 (1120)
.+.++++++.+++|+++..+..+...+..++..++.+...+ +++....-..-.+++.+|+-+-|.=-.=+...++.
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~ 83 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSE 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888887666655444444444333222 22222222334467778877777766666444444
Q ss_pred Hh
Q 001222 463 LK 464 (1120)
Q Consensus 463 L~ 464 (1120)
|.
T Consensus 84 Ll 85 (134)
T PRK11677 84 LL 85 (134)
T ss_pred Hc
Confidence 43
No 231
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=42.90 E-value=1.9e+02 Score=31.81 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=44.0
Q ss_pred cEEEEeCCCCCCC-H--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1033 DLILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1033 DlILmD~~MP~md-G--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.++++|+..-++. | ++++++|.+. ..+||++-.+-.+.++..+++++|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~------~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR------ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5999999875432 2 6778888764 258999999999999999999999999875
No 232
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=42.75 E-value=87 Score=35.58 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001222 990 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1069 (1120)
Q Consensus 990 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1069 (1120)
-.+.+.+-+||.++++. .+|+|++| +|+..+=-++.+.+++.. . -.++.
T Consensus 192 IeVEv~tleqa~ea~~a------------------------gaDiI~LD-n~~~e~l~~av~~~~~~~-----~-~~~le 240 (284)
T PRK06096 192 IVVEADTPKEAIAALRA------------------------QPDVLQLD-KFSPQQATEIAQIAPSLA-----P-HCTLS 240 (284)
T ss_pred EEEECCCHHHHHHHHHc------------------------CCCEEEEC-CCCHHHHHHHHHHhhccC-----C-CeEEE
Confidence 45567899999999863 69999999 555444445555554321 1 24788
Q ss_pred EeccCCHHHHHHHHHcCCCEEEE
Q 001222 1070 LTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1070 lTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.++.-..+......+.|+|-..+
T Consensus 241 aSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 241 LAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EECCCCHHHHHHHHhcCCCEEEE
Confidence 89999999999999999987643
No 233
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=42.66 E-value=2.1e+02 Score=35.34 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=31.7
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.++..+++.... ..+|||+=-+-....|..+|+.+|||..+.
T Consensus 330 ~~ai~~~~~~~~~---~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 330 ASAVYHVARYARE---RGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred HHHHHHHHHHHhh---cCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 4454455443322 248999988888899999999999998875
No 234
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=42.57 E-value=1e+02 Score=33.31 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=47.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCE--EE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGAT--VS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~--v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+-+|.-+|-++....+++..+++.|+. |. ...++.+.+..+.... ...+||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-------------------~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-------------------EEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-------------------TTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-------------------CCCceeEEEEccc
Confidence 358999999999999999999998863 43 4577777777664310 1247999999995
Q ss_pred CCCCCHHHHHHHHH
Q 001222 1041 MPKMDGYEATIEIR 1054 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR 1054 (1120)
.-+-.+..+.+.
T Consensus 131 --K~~y~~y~~~~~ 142 (205)
T PF01596_consen 131 --KRNYLEYFEKAL 142 (205)
T ss_dssp --GGGHHHHHHHHH
T ss_pred --ccchhhHHHHHh
Confidence 233334344443
No 235
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=42.40 E-value=2.9e+02 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHhh
Q 001222 432 EASNNYKSQFLANMSHE 448 (1120)
Q Consensus 432 e~~~~~Ks~Fla~~SHE 448 (1120)
.++.+.|..|+.+|-..
T Consensus 64 rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 64 RESKRERQKFIWSMNKQ 80 (121)
T ss_pred hhhHHHHHhHHhhhhHH
Confidence 33445567788777443
No 236
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=41.92 E-value=21 Score=34.58 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=24.6
Q ss_pred cccCcccccccccccCCCCCCCcEEEEEEeeccch
Q 001222 226 KFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALS 260 (1120)
Q Consensus 226 ~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~ 260 (1120)
..+..+.+.+..||+|. +|+++|+|.|...+.
T Consensus 83 ~~~~~~~~~~~~PV~d~---~g~viG~V~VG~~~~ 114 (116)
T PF14827_consen 83 QGTGGPSLRAFAPVYDS---DGKVIGVVSVGVSLD 114 (116)
T ss_dssp ECTTCEEEEEEEEEE-T---TS-EEEEEEEEEEHH
T ss_pred ecCCceEEEEEEeeECC---CCcEEEEEEEEEEcC
Confidence 44568899999999986 899999998876553
No 237
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=41.70 E-value=1.7e+02 Score=30.31 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=40.5
Q ss_pred CccEEEEeCCCCC--------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPK--------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~--------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|+|+.+.--|. -.|.+..+++++. .++||++..+- ..+...+++++|+|.+..
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL------VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh------CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5899988644332 3467888888764 25899988766 467888999999998754
No 238
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=40.73 E-value=2.8e+02 Score=32.14 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1106 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~ 1106 (1120)
-+.++.+++. ..+|||.=.+-..++|..++++.|+|+.|. |-=++-.|..+.+.
T Consensus 238 p~~i~~~~e~------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~ 296 (326)
T PRK11840 238 PYTIRLIVEG------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKL 296 (326)
T ss_pred HHHHHHHHHc------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHH
Confidence 4566677654 358999888889999999999999999975 44466666655543
No 239
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=40.55 E-value=44 Score=35.44 Aligned_cols=94 Identities=22% Similarity=0.279 Sum_probs=61.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC--CC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ--MP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~--MP 1042 (1120)
++||++|.....---|..+|+.+|++|.+..|....++.++. ..||.|++--- -|
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-----------------------~~pd~iviSPGPG~P 58 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-----------------------LKPDAIVISPGPGTP 58 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-----------------------cCCCEEEEcCCCCCh
Confidence 589999999999999999999999999998887444444432 36899998643 13
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
.--| -....||+. . .++||+.+.= ..+.-|...|.+=.-
T Consensus 59 ~d~G-~~~~~i~~~-~----~~~PiLGVCL----GHQai~~~fGg~V~~ 97 (191)
T COG0512 59 KDAG-ISLELIRRF-A----GRIPILGVCL----GHQAIAEAFGGKVVR 97 (191)
T ss_pred HHcc-hHHHHHHHh-c----CCCCEEEECc----cHHHHHHHhCCEEEe
Confidence 3223 234455554 1 3589998862 233344555654333
No 240
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.01 E-value=2.3e+02 Score=32.12 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCC---EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 001222 978 IVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR 1054 (1120)
Q Consensus 978 ~~l~~~L~~~g~---~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR 1054 (1120)
..++.+=++.++ -.+.+++-+||.++++. .+|+|.+|- | + ++.++++-
T Consensus 170 ~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~------------------------GaDiI~LDn-~---~-~e~l~~~v 220 (273)
T PRK05848 170 EFIQHARKNIPFTAKIEIECESLEEAKNAMNA------------------------GADIVMCDN-M---S-VEEIKEVV 220 (273)
T ss_pred HHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc------------------------CCCEEEECC-C---C-HHHHHHHH
Confidence 334444334443 34468899999999863 689999885 3 2 33333333
Q ss_pred hcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1055 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1055 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.... ..+++ +|..++.-+.+...++.+.|+|.+.+
T Consensus 221 ~~~~~-~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 221 AYRNA-NYPHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred HHhhc-cCCCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 22111 11233 56678888999999999999998764
No 241
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.87 E-value=23 Score=44.82 Aligned_cols=50 Identities=32% Similarity=0.488 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccC---CCCCCCC-CCCccchHHHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWE--------TVFESFEQG---DPSTTRK-HGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~---~~s~~~~-~~GtGLGLaIvk~LVe~ 676 (1120)
.++|.|+|.|||-+.-+ -||....-+ +...-+- .|-.|.|++.|.-+-+.
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 47999999999975332 233222111 1111111 23379999998877764
No 242
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=39.76 E-value=81 Score=36.56 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=40.4
Q ss_pred ccEEEEeCCCCCCC-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1032 FDLILMDCQMPKMD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1032 ~DlILmD~~MP~md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
+|+|.+|+.-|..+ -.|++++||+.. +.+|||+=.- .+.++...+.++|+|...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~-----p~~~vi~g~V-~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHL-----PETFVIAGNV-GTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhC-----CCCeEEEEec-CCHHHHHHHHHcCcCEEE
Confidence 59999999997654 366788888643 3477777322 267788999999999976
No 243
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.68 E-value=1.1e+02 Score=34.95 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=47.2
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
-..+.|.+||.+++.. .+|+|.+| +|...+=-++.+.+|+. .+++|+. .
T Consensus 200 ~VEv~tleea~eA~~~------------------------GaD~I~LD-n~~~e~l~~av~~~~~~-----~~~i~le-A 248 (288)
T PRK07428 200 EVETETLEQVQEALEY------------------------GADIIMLD-NMPVDLMQQAVQLIRQQ-----NPRVKIE-A 248 (288)
T ss_pred EEECCCHHHHHHHHHc------------------------CCCEEEEC-CCCHHHHHHHHHHHHhc-----CCCeEEE-E
Confidence 3457899999998853 68999999 34332222334444432 1346544 5
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++.-..+...+..+.|+|..-+
T Consensus 249 sGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 249 SGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred ECCCCHHHHHHHHHcCCCEEEE
Confidence 6667788888999999997653
No 244
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.48 E-value=90 Score=34.87 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
+.++.+++||+.. ..+|++.|+=..- +....+|.++|+|+.+.-....++....+..+-
T Consensus 73 ~~~~~v~~ir~~~-----~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKH-----PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 5688888888632 2478887776554 566788999999999988777777766555443
No 245
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=39.31 E-value=2.7e+02 Score=33.81 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=62.8
Q ss_pred CcEEEEEeC---CHHHHHHHHHHHHhc--CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAED---TPLIQIVACKILEKV--GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD---~~~n~~~l~~~L~~~--g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..++.||- +.....-..+.+++. ...|. .+.+.++|..+++. ..|.|-
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a------------------------Gad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA------------------------GADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh------------------------CCCEEE
Confidence 678888887 444444333444443 23333 36778888877753 456553
Q ss_pred E--------------eCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 M--------------DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 m--------------D~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
. ++-.| .++++.++++.... ..+|||+=-+-....|..+|+.+||+..+.
T Consensus 292 vg~g~G~~~~t~~~~~~g~p---~~~~i~~~~~~~~~---~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVP---QITAVYDVAEYAAQ---SGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred ECCCCCcCCccceecCCCcc---HHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3 23333 24555555543322 258999988889999999999999998875
No 246
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.20 E-value=2.4e+02 Score=26.63 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=55.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDG-LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng-~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+.+|.++|.++... ..+...|+.+...+-. .+.++.+. -...+.|+....-.
T Consensus 21 ~~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a~-----------------------i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 21 GIDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERAG-----------------------IEKADAVVILTDDD 73 (116)
T ss_dssp TSEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHTT-----------------------GGCESEEEEESSSH
T ss_pred CCEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhcC-----------------------ccccCEEEEccCCH
Confidence 45788888887653 3344566665553222 12222221 13678888876532
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..-..++..+|+..+ ..+||+... +.+......++|+|..+.
T Consensus 74 -~~n~~~~~~~r~~~~-----~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 74 -EENLLIALLARELNP-----DIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp -HHHHHHHHHHHHHTT-----TSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred -HHHHHHHHHHHHHCC-----CCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 445778888887543 467777664 455566777899998764
No 247
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.18 E-value=3.8e+02 Score=29.02 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1031 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1031 ~~DlILmD~~MP~-------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
..|.|+.+-.-+. ...++.++++|+.. .+||++.-+-...++..+++++|+|+.+.-
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~------~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV------DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh------CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4788877642111 24577888888632 489998888777789999999999988764
No 248
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=37.69 E-value=3.5e+02 Score=33.19 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++++.++++.... ..+|||+=-+-....|..+|+.+|||..+.
T Consensus 317 ~~~~~~~~~~~~~---~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 317 ITAIADAAEAAKK---YGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHhcc---CCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 5666666654322 258999988889999999999999998774
No 249
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=36.82 E-value=3.2e+02 Score=26.57 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCEEEEEC--CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-CHHHHHH
Q 001222 975 LIQIVACKILEKVGATVSVVP--DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-DGYEATI 1051 (1120)
Q Consensus 975 ~n~~~l~~~L~~~g~~v~~a~--ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m-dG~e~~~ 1051 (1120)
.-...+..+|.+.|+.+.... .-++.++.+.. ...||+|.+-+.-+.. ...++++
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~----------------------~~~pdiv~~S~~~~~~~~~~~~~~ 60 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE----------------------LLKPDVVGISLMTSAIYEALELAK 60 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH----------------------hcCCCEEEEeeccccHHHHHHHHH
Confidence 345677889999998876644 33334444432 1379999999855544 3567888
Q ss_pred HHHhcccccCCCCcceEEEeccCCHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1052 EIRKSESEHGARNIPIVALTAHAMNADEKK-CLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1052 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~-~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
.||+.. ++++||+--.+.+.. -+. ....++| |+.+==--..+.+.+..+.
T Consensus 61 ~ik~~~-----p~~~iv~GG~~~t~~-p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 61 IAKEVL-----PNVIVVVGGPHATFF-PEEILEEPGVD-FVVIGEGEETFLKLLEELE 111 (127)
T ss_pred HHHHHC-----CCCEEEECCcchhhC-HHHHhcCCCCC-EEEECCcHHHHHHHHHHHH
Confidence 888753 356676655554432 223 3345665 5554333334444444433
No 250
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=36.59 E-value=2e+02 Score=30.24 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=41.0
Q ss_pred CccEEEEeCCCCC--------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPK--------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~--------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|+|..+--.|. ..|.+..+++++.. ..+||+++-+- ..+...++++.|++++..
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-----~~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-----IDIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-----CCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 6899987655442 24788888887642 24898888665 578888999999998764
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.24 E-value=4.2e+02 Score=31.88 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=63.7
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|.+++-|+. ....++..-+..|+.+..+.+..+..+.+.... ....+|+||+|.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk-------------------~~~~~DvVLIDTa 329 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------------------EEARVDYILIDTA 329 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH-------------------hccCCCEEEEeCc
Confidence 568888887654 334455555667888888888776666654321 0125999999963
Q ss_pred CCCCCH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHH---HH-HcCCCEEEECCCCH
Q 001222 1041 MPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKK---CL-GVGMNAYLTKPIDS 1097 (1120)
Q Consensus 1041 MP~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~---~l-~aG~d~yL~KPi~~ 1097 (1120)
+.+- .+.++++++..... .++-.+++++|.....+... .+ ..|.+.+|.=-+|-
T Consensus 330 --GRs~kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 330 --GKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred --cccCcCHHHHHHHHHHHhhc-CCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 3322 33444554432211 12334566777655544332 22 45888877654543
No 252
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.23 E-value=3.4e+02 Score=32.71 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=60.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|++++-|+. ....+..+.+..|..+..+.+..++.+.+.. ..+|+||.|.
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-----------------------~~~D~VLIDT- 307 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-----------------------DGSELILIDT- 307 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-----------------------CCCCEEEEeC-
Confidence 568998888762 1233444445567766666555555555532 3699999996
Q ss_pred CCCCC--HHHHHHHHHhccccc--CCCCcceEEEeccCCHHHHHHHHH----cCCCEEEECCCC
Q 001222 1041 MPKMD--GYEATIEIRKSESEH--GARNIPIVALTAHAMNADEKKCLG----VGMNAYLTKPID 1096 (1120)
Q Consensus 1041 MP~md--G~e~~~~IR~~~~~~--~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~KPi~ 1096 (1120)
|+.. -.+.++++++..... ..+.-.+++++|....++.....+ .|.+..+.=-+|
T Consensus 308 -aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 308 -AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred -CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 3321 123333333321110 012245788888877766665544 577777654444
No 253
>PRK00811 spermidine synthase; Provisional
Probab=36.07 E-value=1.5e+02 Score=33.47 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC------CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG------ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g------~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
.+|.+||=++...+.+++.|...+ -.+ ....|+.+.+... ...||+|++
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------------------------~~~yDvIi~ 156 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------------------------ENSFDVIIV 156 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------------------------CCcccEEEE
Confidence 489999999999999999886532 123 3456666544321 247999999
Q ss_pred eCCCCCCCH-----HHHHHHHHhccc
Q 001222 1038 DCQMPKMDG-----YEATIEIRKSES 1058 (1120)
Q Consensus 1038 D~~MP~mdG-----~e~~~~IR~~~~ 1058 (1120)
|+.-|..-+ -|+.+.+++.-.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcC
Confidence 986664322 455566665443
No 254
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=36.03 E-value=1.9e+02 Score=27.68 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=50.8
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC-H
Q 001222 971 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-G 1046 (1120)
Q Consensus 971 dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md-G 1046 (1120)
|-++.....+..+|++.|+++.... ...+.++.+.+ ..||+|.+.+.+.... .
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-----------------------~~pdiV~iS~~~~~~~~~ 66 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-----------------------EDADVVGLSALSTTHMEA 66 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-----------------------cCCCEEEEecchHhHHHH
Confidence 5666777888899999999988764 33334444432 3799999999876543 4
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCH
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMN 1076 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~ 1076 (1120)
++.++++|+..+ .+++|++=-.+...
T Consensus 67 ~~~~~~~~~~~p----~~~~ivvGG~~~t~ 92 (125)
T cd02065 67 MKLVIEALKELG----IDIPVVVGGAHPTA 92 (125)
T ss_pred HHHHHHHHHhcC----CCCeEEEeCCcCCc
Confidence 555566665422 14666655444443
No 255
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.20 E-value=2.9e+02 Score=31.37 Aligned_cols=67 Identities=16% Similarity=0.037 Sum_probs=49.0
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
.+.+.+-+|+.+++.. .+|+|++|- |+..+=-++.+.++. ..++-.
T Consensus 197 eVEv~slee~~ea~~~------------------------gaDiImLDn-~s~e~l~~av~~~~~---------~~~lea 242 (281)
T PRK06543 197 EVEVDRLDQIEPVLAA------------------------GVDTIMLDN-FSLDDLREGVELVDG---------RAIVEA 242 (281)
T ss_pred EEEeCCHHHHHHHHhc------------------------CCCEEEECC-CCHHHHHHHHHHhCC---------CeEEEE
Confidence 4679999999998853 689999995 443333444444431 237888
Q ss_pred eccCCHHHHHHHHHcCCCEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL 1091 (1120)
++.-..+...+..+.|+|-.-
T Consensus 243 SGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 243 SGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEE
Confidence 999999999999999998654
No 256
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=34.87 E-value=2.5e+02 Score=37.41 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=78.0
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++..+....+..+...+...|..+..+.........+. ..++
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 747 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH----------------------------------QHAF 747 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH----------------------------------CCCC
Confidence 345777888888888888999888877665554433322211 1356
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++++|..++++++....+.++......... ..................+.|.+-++.||+....+...+.....
T Consensus 748 dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~-pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 748 DLALLDINLPDGDGVTLLQQLRAIYGAKNEV-KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CEEEECCCCCCCCHHHHHHHHHhCccccCCC-eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 7889999999988755444443322111112 22333333334445566778999999999999999988877654
No 257
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.69 E-value=3e+02 Score=29.18 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=36.0
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1031 RFDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG-------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
..|.|+.+..-|...| .+.++++|+..... ..++||++ .+--..+...++++.|+|.++.-
T Consensus 126 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~~i~v-~GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 126 DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSILIEV-DGGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCceEEE-ECCcCHHHHHHHHHcCCCEEEEC
Confidence 3577776654454433 45556666543211 12356644 44455788888899999987653
No 258
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=34.52 E-value=1.7e+02 Score=37.87 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-----CCCHHHHHH
Q 001222 979 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-----KMDGYEATI 1051 (1120)
Q Consensus 979 ~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP-----~mdG~e~~~ 1051 (1120)
.....|++.|+.+.. +.+|...+..+.. -++|.|=+|..+= .-....+++
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-----------------------l~~d~iKid~~~~~~~~~~~~~~~~~~ 738 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVS-----------------------LPVTEIKIDKSFVDRCLTEKRILALLE 738 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhh-----------------------CCCCEEEECHHHHhhcccChhHHHHHH
Confidence 344568889998866 5678778887764 3799999997541 112344566
Q ss_pred HHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCC----EEEECCCCHHHHHHHHHHH
Q 001222 1052 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1052 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KPi~~~~L~~~I~~l 1107 (1120)
.|...... .++.+| .++-.+.+....+.+.|+| .|+.||...++|...|++.
T Consensus 739 ~~~~~~~~---~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 739 AITSIGQS---LNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHH---CCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 66554432 245555 4677778888889999998 4788999999999877654
No 259
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=34.39 E-value=6.1e+02 Score=29.84 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhcC-eEEEEECCcceEEEecCC
Q 001222 261 SVGQLMKELVEVHS-GHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 261 ~i~~~l~~l~~~~~-~~iyi~~~~G~ll~~s~~ 292 (1120)
.+...++.+..... .++.+.|.+|.+++.+..
T Consensus 74 ~~~~~l~~l~~~~~i~~i~v~d~~G~vl~~~~~ 106 (407)
T PRK09966 74 AATETLAALGQQGQFSTAEVRDKQQNILASWHY 106 (407)
T ss_pred HHHHHHHHhhcCcceeEEEEECCCCCEEEEeec
Confidence 45556777765544 788899999999987653
No 260
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.30 E-value=1.3e+02 Score=33.15 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
.+++.++++|+. .++|+++++-... +....+|.++|+|+.+.=....+++...+..+-
T Consensus 63 ~~~~~~~~vr~~------~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKK------NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhc------CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 456777777753 2478888876443 566778999999999985555666655544443
No 261
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=34.27 E-value=3.4e+02 Score=36.31 Aligned_cols=117 Identities=12% Similarity=0.161 Sum_probs=79.1
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
+..++++++....+..+...+...|..+..+.........+. ..++
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~----------------------------------~~~~ 846 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS----------------------------------KNHI 846 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH----------------------------------hCCC
Confidence 456888999999999999999999987766655443332211 1346
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
+++++|..++++++....+.++.. ... ...................+.|.+..+.||+....+...+....
T Consensus 847 DlVl~D~~mP~mdG~el~~~ir~~---~~~-~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 847 DIVLTDVNMPNMDGYRLTQRLRQL---GLT-LPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCC-CCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 789999999999876555444322 112 22233333333445566777899999999999999998877654
No 262
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=34.14 E-value=1.1e+02 Score=31.27 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGA 989 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~ 989 (1120)
+++|+||.....+...-+.+.|+...+
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~ 58 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPV 58 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSE
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCc
Confidence 478999999999999999999987653
No 263
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.87 E-value=3.4e+02 Score=30.07 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=40.4
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcC-CCEEEE------CCCCHHHHHHHH
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLT------KPIDSERMVSTI 1104 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~------KPi~~~~L~~~I 1104 (1120)
+++++++++. .++|||+.-+-.+.++..++++.| +|+.+. +=++.+++.+.+
T Consensus 188 ~~~~~~i~~~------~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 188 LELTKAVSEA------VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred HHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 6888888864 258999999999999999999988 999554 445666655544
No 264
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.48 E-value=4.7e+02 Score=31.19 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=64.5
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|.+|.-|.. ....++.+.+.+|..+..+.+..+....+... ..+|+||+|.-
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~----------------------~~~DlVLIDTa 263 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS----------------------KDFDLVLVDTI 263 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh----------------------CCCCEEEEcCC
Confidence 568888887763 22335555556788888888776655555432 36999999974
Q ss_pred --CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHH----cCCCEEEECCCC
Q 001222 1041 --MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG----VGMNAYLTKPID 1096 (1120)
Q Consensus 1041 --MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~KPi~ 1096 (1120)
+| .|-.. +.++++.........-.+++|+|.....+..+.++ .|.+.++.=-+|
T Consensus 264 Gr~~-~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 264 GKSP-KDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCc-cCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 22 23332 33444432211112235788888888777765543 457777654444
No 265
>PF06795 Erythrovirus_X: Erythrovirus X protein; InterPro: IPR009629 This family consists of several Erythrovirus X proteins, which seem to be found exclusively in human parvovirus and human erythrovirus. The function of this family is unknown.
Probab=33.40 E-value=23 Score=30.18 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.5
Q ss_pred ccccccCCchh----hHHHHHHHHHHHHHHHh
Q 001222 6 NKVMSSNMQPL----VVSHLIIVFLLLALLSW 33 (1120)
Q Consensus 6 ~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 33 (1120)
|-.||+++-|. -|+|-|...|..-||||
T Consensus 49 gl~ms~klg~r~~l~tvlqgfmtlgianwlsw 80 (81)
T PF06795_consen 49 GLPMSYKLGPRRMLWTVLQGFMTLGIANWLSW 80 (81)
T ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhHhhhccc
Confidence 55688888886 68999999999999999
No 266
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=33.19 E-value=3e+02 Score=33.98 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=64.8
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhc--CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKV--GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~--g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..|+++|-..- +..-+.+.+++. +..+.. +.+.++|..+++. ..|.|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a------------------------GaD~i~ 315 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA------------------------GVDGLR 315 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc------------------------CcCEEE
Confidence 566777775432 222233444442 345543 7888888888753 578876
Q ss_pred EeC--------------CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDC--------------QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~--------------~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.-+ -.|...-+..+.++.+. ..+|||+=.+-....+..+|+.+||+.++.
T Consensus 316 vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~------~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 316 VGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ------HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ECCCCCccccCccccccCCCcccHHHHHHHHHHh------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 531 22444445556666542 258999999999999999999999998874
No 267
>PRK07695 transcriptional regulator TenI; Provisional
Probab=32.59 E-value=3.4e+02 Score=28.87 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=46.4
Q ss_pred CccEEEEeCCCC-----C--CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE-----ECCCCHH
Q 001222 1031 RFDLILMDCQMP-----K--MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSE 1098 (1120)
Q Consensus 1031 ~~DlILmD~~MP-----~--mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KPi~~~ 1098 (1120)
..|.|+..-..| . ..|++.++++++. .++||+++-+- ..++..+++++|+|.+. .+.-++.
T Consensus 115 Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~------~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~ 187 (201)
T PRK07695 115 GADYVVYGHVFPTDCKKGVPARGLEELSDIARA------LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPY 187 (201)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh------CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHH
Confidence 577777653222 1 2367888888753 25899988776 78889999999999873 2323444
Q ss_pred HHHHHHHHHhh
Q 001222 1099 RMVSTILRLTK 1109 (1120)
Q Consensus 1099 ~L~~~I~~l~~ 1109 (1120)
+-...+.+.++
T Consensus 188 ~~~~~~~~~~~ 198 (201)
T PRK07695 188 SKAKRYAESIK 198 (201)
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 268
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=32.55 E-value=84 Score=35.79 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=46.6
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCE------EEECCCCHHHHHHHHHHHhhcC
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA------YLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~------yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++.+++|++. .++|||+.-+-.+.++..+++++|||. ++.+|.-..++.+-+.++++..
T Consensus 223 l~~v~~i~~~------~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM------VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc------CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 4667777753 248999999999999999999999996 6778876677777777776553
No 269
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.97 E-value=4.3e+02 Score=28.55 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1033 DLILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1033 DlILmD~~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-++++|+..-++ -.+++++++++. .++||++-.+-.+.++..++++.|+|+.+.
T Consensus 162 ~iii~~~~~~g~~~g~~~~~i~~i~~~------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 162 AIIYTDISRDGTLSGPNFELYKELAAA------TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEEeecCCCccCCCCHHHHHHHHHh------cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 366788754322 226888888863 258999999999999999999999999764
No 270
>PLN03237 DNA topoisomerase 2; Provisional
Probab=31.89 E-value=68 Score=43.99 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCCC---CCCC-CCCccchHHHHHHHHHHcCCE
Q 001222 627 CFEVDDTGCGIDQSKWE--------TVFESFEQGDPS---TTRK-HGGTGLGLSIVRTLVNKMGGE 680 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~~~s---~~~~-~~GtGLGLaIvk~LVe~mGG~ 680 (1120)
.|+|.|+|.|||-+.-+ -||.....+.+- ..+- .|=.|.|.+.|.-+-+.+--+
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Ve 177 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIE 177 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEE
Confidence 38999999999976332 244433322211 1111 233699999998877655433
No 271
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.75 E-value=2.7e+02 Score=29.11 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=55.2
Q ss_pred HHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-------CHHHHHHH
Q 001222 980 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-------DGYEATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m-------dG~e~~~~ 1052 (1120)
.+.++.....--..+.+.+|+.++.+ ...|.|+.----|-- -|++..++
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~------------------------~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~ 143 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEE------------------------LGADYVFLGPVFPTSSKPGAPPLGLDGLRE 143 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHH------------------------CTTSEEEEETSS--SSSSS-TTCHHHHHHH
T ss_pred hhhhcccceEEEeecCcHHHHHHhhh------------------------cCCCEEEECCccCCCCCccccccCHHHHHH
Confidence 45556554444557888888766653 257999987654433 38998888
Q ss_pred HHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1053 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1053 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
+++.. ++||+++-+- +.++...+.++|++++-
T Consensus 144 ~~~~~------~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 144 IARAS------PIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp HHHHT------SSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred HHHhC------CCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 88753 4899999886 45677889999999874
No 272
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=31.38 E-value=1.6e+02 Score=30.82 Aligned_cols=71 Identities=21% Similarity=0.175 Sum_probs=48.6
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
.+.+.+-+|+.++++. .+|.|.+|-.-| -+=-++.+.+|... ++ ..|.+
T Consensus 84 ~VEv~~~ee~~ea~~~------------------------g~d~I~lD~~~~-~~~~~~v~~l~~~~-----~~-v~ie~ 132 (169)
T PF01729_consen 84 EVEVENLEEAEEALEA------------------------GADIIMLDNMSP-EDLKEAVEELRELN-----PR-VKIEA 132 (169)
T ss_dssp EEEESSHHHHHHHHHT------------------------T-SEEEEES-CH-HHHHHHHHHHHHHT-----TT-SEEEE
T ss_pred EEEcCCHHHHHHHHHh------------------------CCCEEEecCcCH-HHHHHHHHHHhhcC-----Cc-EEEEE
Confidence 4568889999998863 699999997544 22233444444332 22 68888
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++.-..+...+..+.|+|.+-+
T Consensus 133 SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 133 SGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp ESSSSTTTHHHHHHTT-SEEEE
T ss_pred ECCCCHHHHHHHHhcCCCEEEc
Confidence 9999999999999999988753
No 273
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=31.16 E-value=46 Score=32.62 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=43.1
Q ss_pred CC-cccccccccCCCCCCccccccccccCCCCcceeeeeeeccc--CcccccccccccCCCCCCCcEEEEEEeeccchhH
Q 001222 186 DP-ITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFT--NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSV 262 (1120)
Q Consensus 186 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i 262 (1120)
|+ .|||.+|.|.......+..- -.. ...+...|...+ +..+-+.+..+.|. +|.++|..++..-.+.+
T Consensus 39 Ng~vsgR~vGdp~t~~~l~~l~~-----~~~-~~~~~~nY~~~~~~Gk~lrSsT~~Ird~---~g~~iG~LCIN~D~s~~ 109 (118)
T PF08348_consen 39 NGHVSGRKVGDPITDLALELLKE-----KQY-EEDYIINYKTKTKDGKILRSSTFFIRDE---NGKLIGALCINFDISAL 109 (118)
T ss_pred CCCccCCccCCchhHHHHHHHhc-----ccc-CCCccccccccCCCCCEEEEEEEEEECC---CCCEEEEEEEEeccHHH
Confidence 44 89999998875443222111 000 112222222222 45666777889997 88999999998766665
Q ss_pred HHHHH
Q 001222 263 GQLMK 267 (1120)
Q Consensus 263 ~~~l~ 267 (1120)
..+.+
T Consensus 110 ~~~~~ 114 (118)
T PF08348_consen 110 EQAQN 114 (118)
T ss_pred HHHHH
Confidence 55533
No 274
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=30.75 E-value=3.4e+02 Score=35.86 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=75.3
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 714 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 714 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
.+..+++.+++...+..+...+...|+.+..+.........+ ....+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~---------------------------------~~~~~ 726 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETL---------------------------------QNSEP 726 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHH---------------------------------HcCCC
Confidence 345678888888888888888888887766554433222111 01235
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++++|+.++++++....+.++. ......+..+ ..........+..+.|...++.||+....+...+.....
T Consensus 727 ~Dlvl~D~~mp~~~G~~~~~~lr~---~~~~~~ii~~-t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 727 FAAALVDFDLPDYDGITLARQLAQ---QYPSLVLIGF-SAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEE-eCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 688999999999887544443332 1122222222 222233334455567777889999999999988877654
No 275
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.63 E-value=4.2e+02 Score=29.18 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCEEEEECCHHHHH-HHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHH-----HHHH
Q 001222 978 IVACKILEKVGATVSVVPDGLQAV-EALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY-----EATI 1051 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~~a~ng~eAl-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~-----e~~~ 1051 (1120)
....+.|-+.||.|....+..-.+ +.+... =-..+|-+--|...|. +.++
T Consensus 120 l~Aae~Lv~eGF~VlPY~~dD~v~arrLee~------------------------GcaavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTDDPVLARRLEEA------------------------GCAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred HHHHHHHHhCCCEEeeccCCCHHHHHHHHhc------------------------CceEeccccccccCCcCcCCHHHHH
Confidence 345667888999988654433222 222211 1246777777877763 4567
Q ss_pred HHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1052 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1052 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
.|++. .++|||+=.+-..+++...++|.|+|+.|.-
T Consensus 176 iiie~------a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 176 IIIEE------ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHHh------CCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 77753 2699999999999999999999999999864
No 276
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=30.60 E-value=1.2e+02 Score=32.14 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=27.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGL 998 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~ 998 (1120)
|||||-....-.-+..+|++.|+.+.+..+..
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~ 33 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDS 33 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCC
Confidence 89999999988989999999999998877543
No 277
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=30.55 E-value=1.3e+02 Score=32.74 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=41.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
++.-+|-|+...+.+++.+++.|.. +..... -+|++.+.+. ...+||+||+|..=+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~--------------------~~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL--------------------LDGSFDLVFIDADKAD 144 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc--------------------cCCCccEEEEeCChhh
Confidence 8999999999999999999999864 444431 3445555321 1358999999996543
No 278
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=30.45 E-value=3.2e+02 Score=28.93 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--cCC-------------EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEK--VGA-------------TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTP 1030 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~--~g~-------------~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1120)
+..||-.-+..|.++.+++.. .|+ .|..+.+-++|++.+++. +..
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~--------------------~G~ 103 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE--------------------EGK 103 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH--------------------HSS
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH--------------------hCC
Confidence 789999999999999999863 343 488999999999998764 245
Q ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCC
Q 001222 1031 RFDLILMDCQ-MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1096 (1120)
Q Consensus 1031 ~~DlILmD~~-MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~ 1096 (1120)
.|-+|-+|.. -|..=+|+.++++-.... ...-+++=|+....++..+ .-||+..|+.
T Consensus 104 ~P~~v~TsAr~~~~~is~~~lr~~l~~~~----~P~LllFGTGwGL~~ev~~-----~~D~iLePI~ 161 (185)
T PF09936_consen 104 RPLLVATSARKYPNTISYAELRRMLEEED----RPVLLLFGTGWGLAPEVME-----QCDYILEPIR 161 (185)
T ss_dssp --EEEE--SS--SS-B-HHHHHHHHHH------S-EEEEE--TT---HHHHT-----T-SEEB--TT
T ss_pred CCEEEEecCcCCCCCcCHHHHHHHHhccC----CeEEEEecCCCCCCHHHHH-----hcCeeEcccc
Confidence 7999999998 566667777766542211 1234555588888776643 4468888974
No 279
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.33 E-value=2.4e+02 Score=31.95 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=61.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hcC---CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001222 966 RILLAEDTPLIQIVACKILE---KVG---ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1039 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~---~~g---~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~ 1039 (1120)
.|||-|.+-... -+...++ +.. .-.+.+++-+||.++++. ..|+|++|-
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a------------------------gaDiI~LDn 210 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA------------------------GADIIMLDN 210 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc------------------------CcCEEEECC
Confidence 367766664433 3444333 222 135568999999999863 689999997
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1040 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1040 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|. +=-++.+.+++... .+-..+..++.-..+...+..+.|+|.+-+
T Consensus 211 ~~~e-~l~~~v~~l~~~~~----~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 211 MTPE-EIREVIEALKREGL----RERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CCHH-HHHHHHHHHHhcCc----CCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 5543 22334444443211 122467788888999999999999987654
No 280
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.21 E-value=2.2e+02 Score=35.08 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.6
Q ss_pred CcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1064 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1064 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++|||+=.+--...|..+|+.+|||..+.
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 48999999999999999999999998875
No 281
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.77 E-value=80 Score=33.39 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=30.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHH
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 1004 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l 1004 (1120)
|||||-....-.-+..+|.+.|++|.++.+..--++.+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~ 39 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDI 39 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999998888889999999999999998764223434
No 282
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=29.54 E-value=2.3e+02 Score=30.94 Aligned_cols=106 Identities=17% Similarity=0.291 Sum_probs=65.2
Q ss_pred HHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHH
Q 001222 980 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-------~e~~~~ 1052 (1120)
+-..+++.|..+-.|-|...-++.+...+ ...|+|+.=---|+-.| ++-+++
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---------------------~~~D~vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIM---------------------DKVDLILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------------------HhCCeEEEEEecCCCCCceecHhHHHHHHH
Confidence 34567788998888877766666665432 14565544233466544 556677
Q ss_pred HHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHh
Q 001222 1053 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1053 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KPi~~~~L~~~I~~l~ 1108 (1120)
+|+....++ .++||.+ -+.-..+...++.++|+|.++ .+.-++.+....+++.+
T Consensus 157 l~~~~~~~~-~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 157 VRKMIDESG-RDIRLEI-DGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred HHHHHHhcC-CCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 766543222 2466655 566668889999999999774 34335555555555544
No 283
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=29.13 E-value=5.2e+02 Score=29.18 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=60.1
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.++.+++-+.. ....++...+..|+.+..+.+..+..+.++... ....+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------------------~~~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------------------EEARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH-------------------hcCCCCEEEEECC
Confidence 356776665432 333455566678899888877655444443210 1136999999973
Q ss_pred CCCCC--HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHH----HHcCCCEEEECCCC
Q 001222 1041 MPKMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC----LGVGMNAYLTKPID 1096 (1120)
Q Consensus 1041 MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~----l~aG~d~yL~KPi~ 1096 (1120)
+.. .-+.++++++...... +.-.+.+++|.....+..+. -..+.+.++.--+|
T Consensus 164 --Gr~~~~~~~l~el~~~~~~~~-~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 164 --GKNYRASETVEEMIETMGQVE-PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred --CCCcCCHHHHHHHHHHHhhhC-CCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 332 2334445544322111 22346677776655554332 23577777654444
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.12 E-value=5.7e+02 Score=30.57 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=65.1
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|.+++-|+. ....++.+-+..|..+..+.+..+..+++.... ....+|+||.|.-
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~-------------------~~~~~D~VLIDTA 294 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT-------------------YVNCVDHILIDTV 294 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH-------------------hcCCCCEEEEECC
Confidence 568888887754 234555666667877777888877666664320 0135899999983
Q ss_pred CCCCC--HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHH----HcCCCEEEECCCCH
Q 001222 1041 MPKMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPIDS 1097 (1120)
Q Consensus 1041 MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KPi~~ 1097 (1120)
+.+ .-+.+.++++..... .++..++++++.....+...++ ..|.+.++.=-+|-
T Consensus 295 --Gr~~~d~~~l~EL~~l~~~~-~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDE 354 (407)
T PRK12726 295 --GRNYLAEESVSEISAYTDVV-HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred --CCCccCHHHHHHHHHHhhcc-CCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence 332 233444554432211 1234455667766666666554 35677776544543
No 285
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=28.81 E-value=4.3e+02 Score=27.88 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=37.9
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1032 FDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1032 ~DlILmD~~MP~mdG-------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.|.|+.+...|+-+| .+..+++|+..... ..++||++.- --..+...++.++|+|.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~-~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPEN-NLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhc-CCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 688888766666544 44556666543211 1236765544 45568888999999999875
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=28.77 E-value=5.3e+02 Score=30.10 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=58.8
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhcCCEEEEECCHHHH----HHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAEDTP---LIQIVACKILEKVGATVSVVPDGLQA----VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD~~---~n~~~l~~~L~~~g~~v~~a~ng~eA----l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+.+|+++.-+. .....++..-...|..+.....|.+. .++++.. ....+|+||
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~--------------------~~~~~DvVL 227 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA--------------------KARGIDVVL 227 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH--------------------HhCCCCEEE
Confidence 56888887663 33445566667788777665554322 2322211 113689999
Q ss_pred EeCCCCCCC-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHH--HHHH--HcCCCEEEECCCCH
Q 001222 1037 MDCQMPKMD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADE--KKCL--GVGMNAYLTKPIDS 1097 (1120)
Q Consensus 1037 mD~~MP~md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~--~~~l--~aG~d~yL~KPi~~ 1097 (1120)
.|.- +.+. -.++..++++..... .++..++++.|....+.. .+.+ ..|.+..+.=-+|.
T Consensus 228 IDTa-Gr~~~~~~lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 228 IDTA-GRMHTDANLMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred EECC-CccCCcHHHHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 9974 2221 234445554432111 134446666665443333 2333 36888877544544
No 287
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=28.62 E-value=4.9e+02 Score=29.62 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=42.3
Q ss_pred CccEEEEeCCC-----CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQM-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|...-.- .....++++.++++... .++|||+-.+-.+..|..+|+..|||....
T Consensus 193 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~----~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 193 GADGIVVSNHGGRQLDGAPATIDALPEIVAAVG----GRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc----CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 46666654321 12345778888876432 258999999999999999999999998765
No 288
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.50 E-value=5.3e+02 Score=29.91 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=31.3
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.++..+++.... ..+|||+--+-.+..+..+++.+|||..+.
T Consensus 183 ~~~i~~v~~~~~~---~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 183 ATAVADVAAAARD---YGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHhh---cCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 3444455443222 258999877788899999999999999876
No 289
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.38 E-value=2.6e+02 Score=31.73 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEe
Q 001222 992 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1071 (1120)
Q Consensus 992 ~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalT 1071 (1120)
..+.+.+|+.++++. .+|+|.+|-. |.|-++++.+... .++|+++ +
T Consensus 194 VEv~tleea~eA~~~------------------------gaD~I~LD~~-----~~e~l~~~v~~~~----~~i~leA-s 239 (277)
T PRK05742 194 VEVESLDELRQALAA------------------------GADIVMLDEL-----SLDDMREAVRLTA----GRAKLEA-S 239 (277)
T ss_pred EEeCCHHHHHHHHHc------------------------CCCEEEECCC-----CHHHHHHHHHHhC----CCCcEEE-E
Q ss_pred ccCCHHHHHHHHHcCCCEEEE
Q 001222 1072 AHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1072 a~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.-..+....+.++|+|.+-+
T Consensus 240 GGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 240 GGINESTLRVIAETGVDYISI 260 (277)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
No 290
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=28.31 E-value=4.1e+02 Score=31.56 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=62.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEE---------------EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATV---------------SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPD 1028 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v---------------~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1120)
+.+++||-|.+.-...+..++++.|... ..+..-.+.-+.+.
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----------------------- 318 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----------------------- 318 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH-----------------------
Confidence 4688999998865466788888888643 22332233334443
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1029 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1029 ~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
.-|++++=-.....-|.-.++.+. ..+|||+--......+..+.+ +. +++..|-+.++|.++|.++
T Consensus 319 --~aDi~~v~~S~~e~~g~~~lEAma--------~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~l 385 (425)
T PRK05749 319 --IADIAFVGGSLVKRGGHNPLEPAA--------FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYL 385 (425)
T ss_pred --hCCEEEECCCcCCCCCCCHHHHHH--------hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHH
Confidence 358866622221112322333332 248898632212233333333 33 4666788999999999988
Q ss_pred hhc
Q 001222 1108 TKN 1110 (1120)
Q Consensus 1108 ~~~ 1110 (1120)
+.+
T Consensus 386 l~~ 388 (425)
T PRK05749 386 LTD 388 (425)
T ss_pred hcC
Confidence 753
No 291
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.29 E-value=5.4e+02 Score=27.47 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=43.8
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCc-ceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCH
Q 001222 1031 RFDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNI-PIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDS 1097 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG-------~e~~~~IR~~~~~~~~~~i-pIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~ 1097 (1120)
..|.|+++..-|+.+| .+-.+++|+.... ..+ |.|++.+--..+...++.++|+|.++. +.=++
T Consensus 131 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~---~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 131 LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE---RGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHh---cCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 4687777765565544 3445555543221 123 566677777778888999999997754 43355
Q ss_pred HHHHHHHHH
Q 001222 1098 ERMVSTILR 1106 (1120)
Q Consensus 1098 ~~L~~~I~~ 1106 (1120)
.+....+++
T Consensus 208 ~~~~~~~~~ 216 (220)
T PRK05581 208 KEAIDSLRA 216 (220)
T ss_pred HHHHHHHHH
Confidence 544444443
No 292
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=28.09 E-value=3.7e+02 Score=31.02 Aligned_cols=108 Identities=15% Similarity=0.240 Sum_probs=67.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+.+++++.|.+. +..++..++..|.. +.......+..+.+. ..|+.++=- .
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------------------~adi~v~pS-~ 281 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ-------------------------ALDLFVLPS-L 281 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH-------------------------hcCEEEecc-c
Confidence 468888887654 45567777777654 443333334445553 357766421 1
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
.+.=|.-+++.+. ..+|||+ |.... ..+.++.|-++++..|-+.++|.++|.+++.+
T Consensus 282 ~Eg~~~~~lEAma--------~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 282 AEGISNTILEAMA--------SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred cccCchHHHHHHH--------cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 2222445555554 2489987 43332 23345678889999999999999999988753
No 293
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=28.00 E-value=2.2e+02 Score=32.59 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=48.4
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001222 990 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1069 (1120)
Q Consensus 990 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1069 (1120)
-.+.+++.+||.++++. .+|+|++|-.-| -++.+.++.. . .+ .+|.
T Consensus 211 IeVEv~sleea~ea~~~------------------------gaDiI~LDn~s~----e~~~~av~~~-~----~~-~~ie 256 (296)
T PRK09016 211 VEVEVENLDELDQALKA------------------------GADIIMLDNFTT----EQMREAVKRT-N----GR-ALLE 256 (296)
T ss_pred EEEEeCCHHHHHHHHHc------------------------CCCEEEeCCCCh----HHHHHHHHhh-c----CC-eEEE
Confidence 45678999999999863 689999996544 2232333321 1 12 3677
Q ss_pred EeccCCHHHHHHHHHcCCCEEEE
Q 001222 1070 LTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1070 lTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.++.-..+...+..+.|+|-.-+
T Consensus 257 aSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 257 VSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EECCCCHHHHHHHHhcCCCEEEe
Confidence 88888999999999999987643
No 294
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=27.98 E-value=90 Score=35.34 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcccccCCCCcceE--EEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~ 1110 (1120)
-++++++++++. ..+||| +.-+-.++++...++++|+|.++. |.-++.+....+...+..
T Consensus 190 ~~~elL~ei~~~------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAEL------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHh------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 468999999874 248998 777777999999999999999864 444677666666666544
No 295
>PRK12704 phosphodiesterase; Provisional
Probab=27.69 E-value=50 Score=40.80 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=37.8
Q ss_pred ceEEEeccCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1066 PIVALTAHAMNA--DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1066 pIIalTa~~~~~--~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
.+|++|+++... ....+++.|+.|+..||+..+++...+..-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 378899988765 77789999999999999999999999876553
No 296
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=27.55 E-value=1e+02 Score=38.65 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.5
Q ss_pred EEEEEEEeCCCCCChhhHhhhhcccccC
Q 001222 625 ALCFEVDDTGCGIDQSKWETVFESFEQG 652 (1120)
Q Consensus 625 ~l~~~V~DtG~GI~~e~l~~IFe~F~q~ 652 (1120)
.+.+.|.|+|.|+..+++..+=++|+..
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 3678999999999999999999888754
No 297
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=27.50 E-value=5.6e+02 Score=28.65 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE------EEeCCCCCCCHHHHHHH
Q 001222 980 ACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI------LMDCQMPKMDGYEATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI------LmD~~MP~mdG~e~~~~ 1052 (1120)
+...-..+|.++. .+.|.+|+-.+++. ..++| |.+..+ ..+.+.+
T Consensus 148 l~~~A~~LGm~~LVEVh~~eEl~rAl~~------------------------ga~iIGINnRdL~tf~v----dl~~t~~ 199 (254)
T COG0134 148 LVDRAHELGMEVLVEVHNEEELERALKL------------------------GAKIIGINNRDLTTLEV----DLETTEK 199 (254)
T ss_pred HHHHHHHcCCeeEEEECCHHHHHHHHhC------------------------CCCEEEEeCCCcchhee----cHHHHHH
Confidence 3444456898865 58888888777752 34555 222221 2455777
Q ss_pred HHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1053 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1053 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+...-+. +..+|.-|+-.+.++..+...+|+|+||.
T Consensus 200 la~~~p~----~~~~IsESGI~~~~dv~~l~~~ga~a~LV 235 (254)
T COG0134 200 LAPLIPK----DVILISESGISTPEDVRRLAKAGADAFLV 235 (254)
T ss_pred HHhhCCC----CcEEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 7765432 46788889999999999999999999996
No 298
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.43 E-value=5.1e+02 Score=32.33 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=42.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1030 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1030 ~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+..|.++.-..=+..+ ..++..+|+.. ++.+||+-+. ++++.....++|+|..+. ..+++...+.+.+.
T Consensus 480 ~~a~~viv~~~~~~~~-~~iv~~~~~~~-----~~~~iiar~~--~~~~~~~l~~~Gad~vv~---p~~~~a~~i~~~l~ 548 (558)
T PRK10669 480 DCARWLLLTIPNGYEA-GEIVASAREKR-----PDIEIIARAH--YDDEVAYITERGANQVVM---GEREIARTMLELLE 548 (558)
T ss_pred cccCEEEEEcCChHHH-HHHHHHHHHHC-----CCCeEEEEEC--CHHHHHHHHHcCCCEEEC---hHHHHHHHHHHHhc
Confidence 3678776654322111 23555567643 3578888764 345666778899997773 34556666666665
Q ss_pred cC
Q 001222 1110 NM 1111 (1120)
Q Consensus 1110 ~~ 1111 (1120)
+.
T Consensus 549 ~~ 550 (558)
T PRK10669 549 TP 550 (558)
T ss_pred CC
Confidence 54
No 299
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=27.35 E-value=1.7e+02 Score=31.99 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=44.6
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1032 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1032 ~DlILmD~~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..+|++|+.--++ .| +++++++++. ..+|||+--+-.+.+|..++.++|+|+.+.
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~------~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL------SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3699999986544 34 7888888864 258999998899999999999999999875
No 300
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.34 E-value=5e+02 Score=29.47 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE------EECCCCHHHHHHHHHHHhhcC
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY------LTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y------L~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
.++.+++||+. .++|||+..+-.+.++..+++.+|+|.+ +..|.-...+.+-+.+++.+.
T Consensus 222 ~l~~v~~i~~~------~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 222 ALRMVYQVYQA------VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred cHHHHHHHHHh------CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 36778888864 2589999999999999999999998754 345766667777776666543
No 301
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=27.17 E-value=1.8e+02 Score=31.51 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccC----------CHHHHHHHHHcCCCEEEE------CC--CCHHHHHHHHHH
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHA----------MNADEKKCLGVGMNAYLT------KP--IDSERMVSTILR 1106 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~----------~~~~~~~~l~aG~d~yL~------KP--i~~~~L~~~I~~ 1106 (1120)
+++.++++|+.. .+|||.++.+. ..++...|.++|+|-.+. +| -...++...+++
T Consensus 44 ~~~~i~~i~~~~------~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 44 GVEDIKAIRAVV------DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CHHHHHHHHHhC------CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 488889998742 48888665422 345678999999994443 45 556666666655
No 302
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=26.97 E-value=2.7e+02 Score=32.99 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.9
Q ss_pred CcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1064 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1064 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|||+=-+-.+..|..+|+..|||..+.
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 59999999999999999999999999874
No 303
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.96 E-value=2.1e+02 Score=32.69 Aligned_cols=68 Identities=13% Similarity=-0.007 Sum_probs=48.3
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
.+.+++-+|+.++++. .+|+|++|- |+..+=-++.+.++. -.++-.
T Consensus 209 eVEvetleea~eA~~a------------------------GaDiImLDn-mspe~l~~av~~~~~---------~~~lEa 254 (294)
T PRK06978 209 QIEVETLAQLETALAH------------------------GAQSVLLDN-FTLDMMREAVRVTAG---------RAVLEV 254 (294)
T ss_pred EEEcCCHHHHHHHHHc------------------------CCCEEEECC-CCHHHHHHHHHhhcC---------CeEEEE
Confidence 4568899999999863 689999995 433333333333321 247888
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++.-..+...+..+.|+|-.-+
T Consensus 255 SGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 255 SGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
Confidence 9999999999999999986543
No 304
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=26.95 E-value=2.2e+02 Score=32.08 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=47.8
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
-..+.+-+||.++++. ..|+|.+|-.-|. +=-++.+.+|+. .+++||++.
T Consensus 187 gVev~t~eea~~A~~~------------------------gaD~I~ld~~~p~-~l~~~~~~~~~~-----~~~i~i~As 236 (272)
T cd01573 187 VVEVDSLEEALAAAEA------------------------GADILQLDKFSPE-ELAELVPKLRSL-----APPVLLAAA 236 (272)
T ss_pred EEEcCCHHHHHHHHHc------------------------CCCEEEECCCCHH-HHHHHHHHHhcc-----CCCceEEEE
Confidence 4567889998888742 6899999965552 112334444432 135787765
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
- .-..+...+..++|+|.+..
T Consensus 237 G-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 237 G-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred C-CCCHHHHHHHHHcCCcEEEE
Confidence 4 55778888999999998753
No 305
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.74 E-value=2.2e+02 Score=32.34 Aligned_cols=68 Identities=18% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
.+.+++-+||.++++. .+|+|++| +|+.-+=-++.+.++. ..| +..
T Consensus 198 eVEv~tleea~ea~~~------------------------gaDiI~LD-n~s~e~l~~av~~~~~--------~~~-lea 243 (281)
T PRK06106 198 EVEVDTLDQLEEALEL------------------------GVDAVLLD-NMTPDTLREAVAIVAG--------RAI-TEA 243 (281)
T ss_pred EEEeCCHHHHHHHHHc------------------------CCCEEEeC-CCCHHHHHHHHHHhCC--------Cce-EEE
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++.-..+...+..+.|+|-.-+
T Consensus 244 SGGI~~~ni~~yA~tGVD~Is~ 265 (281)
T PRK06106 244 SGRITPETAPAIAASGVDLISV 265 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
No 306
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.62 E-value=1.8e+02 Score=32.75 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecc------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
+.++.++++|+. ..+|+|++|=. ..+....+|.++|+|+.+.--...++....+..+
T Consensus 78 ~~~~~~~~~r~~------~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGE------IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcC------CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 568899999853 24898888854 3355678999999999999877777766555444
No 307
>PRK04457 spermidine synthase; Provisional
Probab=26.51 E-value=4.6e+02 Score=29.30 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=46.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC--CEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVG--ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g--~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|..||=++.....++..+...+ ..+. ...|+.+.+... ...||+|++|.-
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------------------~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------------------RHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------------------CCCCCEEEEeCC
Confidence 4689999999999999998876432 2333 346776655422 247999999962
Q ss_pred ----CCC-CCHHHHHHHHHhccc
Q 001222 1041 ----MPK-MDGYEATIEIRKSES 1058 (1120)
Q Consensus 1041 ----MP~-mdG~e~~~~IR~~~~ 1058 (1120)
||. +.--++.+.+++.-.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~ 168 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALS 168 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcC
Confidence 221 122577777776543
No 308
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=26.27 E-value=67 Score=40.17 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccc
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFE 650 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~ 650 (1120)
.|+|.|+|+||++.+.+-+-..++
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhh
Confidence 489999999999998877665554
No 309
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.18 E-value=1.5e+02 Score=33.46 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1117 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1117 (1120)
...+.+|+..+ .-.+|.++.++. ++..++.++|+|..+.=|+.+++|..++..+-.+.+-++.|
T Consensus 170 ~~v~~~r~~~~-----~~~~Igvev~s~-eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~~ipi~AiG 233 (268)
T cd01572 170 EAVRRARAAAP-----FTLKIEVEVETL-EQLKEALEAGADIIMLDNMSPEELREAVALLKGRVLLEASG 233 (268)
T ss_pred HHHHHHHHhCC-----CCCeEEEEECCH-HHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCCCCcEEEEC
Confidence 35677777532 124688888765 66788999999999999999999998886543344445544
No 310
>PLN02823 spermine synthase
Probab=26.03 E-value=2.3e+02 Score=33.09 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=38.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-----CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001222 965 LRILLAEDTPLIQIVACKILEKV-----GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1038 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~-----g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD 1038 (1120)
.+|-+||=|+...+++++.+... .-.+. ...||.+.++.. ...||+||+|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------------------------~~~yDvIi~D 183 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------------------------DEKFDVIIGD 183 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------------------------CCCccEEEec
Confidence 47999999999999999988532 12333 456776655321 2479999999
Q ss_pred CCCCC
Q 001222 1039 CQMPK 1043 (1120)
Q Consensus 1039 ~~MP~ 1043 (1120)
+--|.
T Consensus 184 ~~dp~ 188 (336)
T PLN02823 184 LADPV 188 (336)
T ss_pred CCCcc
Confidence 86553
No 311
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=25.70 E-value=1.4e+03 Score=28.50 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhccchHhHh
Q 001222 22 IIVFLLLALLSWVYTTKSLDTL 43 (1120)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~ 43 (1120)
++++|.+|+.+.....++++.+
T Consensus 22 ~~~~g~~~~~~~~~~~~~~~~~ 43 (554)
T PRK15041 22 QLTSGGLFFNALKNDKENFTVL 43 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666556666544
No 312
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.67 E-value=3.6e+02 Score=30.17 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=44.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-----CEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-----ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1038 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-----~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD 1038 (1120)
.++.+||-++.....+++.+...+ -.+. ...|+.+.++.. ...||+|++|
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------------------------~~~yDvIi~D 152 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------------------------ENTFDVIIVD 152 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------------------------CCCccEEEEe
Confidence 479999999999888888886532 1222 235665544422 2479999999
Q ss_pred CCCCCCC-----HHHHHHHHHhccc
Q 001222 1039 CQMPKMD-----GYEATIEIRKSES 1058 (1120)
Q Consensus 1039 ~~MP~md-----G~e~~~~IR~~~~ 1058 (1120)
.--|... .-|+.+.+++.-.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~ 177 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALN 177 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhC
Confidence 8655432 2456666666443
No 313
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.35 E-value=2.6e+02 Score=29.89 Aligned_cols=93 Identities=13% Similarity=0.234 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-----CCHHHHHH
Q 001222 979 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-----MDGYEATI 1051 (1120)
Q Consensus 979 ~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~-----mdG~e~~~ 1051 (1120)
.....|++.|+.+.. +..+...++.+.. -+||.|=+|..+-. .....+++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~-----------------------l~~d~iKld~~~~~~~~~~~~~~~~l~ 193 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR-----------------------LPVDLLKIDKSFVRDLQTDPEDEAIVQ 193 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh-----------------------CCCCeEEECHHHHhhhccChhHHHHHH
Confidence 445677889998765 3455566666653 37999999965421 11345566
Q ss_pred HHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCC----EEEECCCCHH
Q 001222 1052 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSE 1098 (1120)
Q Consensus 1052 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KPi~~~ 1098 (1120)
.|...... ..+++| .++-.+.++...+.+.|+| .|+.||...+
T Consensus 194 ~l~~~~~~---~~~~vi-a~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 194 SIIELAQK---LGLQVV-AEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHH---CCCeEE-EecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 66655433 235555 5677788888999999997 3567887643
No 314
>PRK13566 anthranilate synthase; Provisional
Probab=25.29 E-value=1.9e+02 Score=37.32 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=32.6
Q ss_pred cccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001222 961 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 998 (1120)
Q Consensus 961 ~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~ 998 (1120)
...+.+|||||-...+-..+.++|++.|++|..+....
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~ 560 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF 560 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC
Confidence 34578999999998888899999999999999887764
No 315
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=25.28 E-value=1.1e+03 Score=27.65 Aligned_cols=110 Identities=17% Similarity=0.264 Sum_probs=64.5
Q ss_pred CcEEEEEeCCH--------HHHHHHHHHHHhcCCEEEEECC--HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc
Q 001222 964 GLRILLAEDTP--------LIQIVACKILEKVGATVSVVPD--GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD 1033 (1120)
Q Consensus 964 ~~~ILIVdD~~--------~n~~~l~~~L~~~g~~v~~a~n--g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1033 (1120)
..+++||.|.+ .....+..+.++.+-.+..... .++..+.+. ..|
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~-------------------------~aD 278 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP-------------------------LAD 278 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH-------------------------hCC
Confidence 46788887643 2233445555556666655543 455555554 358
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHhhc
Q 001222 1034 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-LTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1034 lILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-L~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+.++=-...+.=|.-+++.+. ..+|||+...... .+..+.|.++| +..|.+.++|.++|.+++..
T Consensus 279 v~v~pS~~~E~f~~~~lEAma--------~G~PVI~s~~gg~----~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 279 LVVVPSQVEEAFCMVAVEAMA--------AGKPVLASTKGGI----TEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred EEEeCCCCccccccHHHHHHH--------cCCCEEEeCCCCc----HhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 877633222222333333333 2489987443322 23455688888 66899999999999988754
No 316
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=25.09 E-value=2.2e+02 Score=31.18 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE-EEeCCCCCCCHHHH----HHHH
Q 001222 979 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI-LMDCQMPKMDGYEA----TIEI 1053 (1120)
Q Consensus 979 ~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI-LmD~~MP~mdG~e~----~~~I 1053 (1120)
...+.+++.|..+-.+-+...-++.+.... +....|.| +|.++ |+.+|-.+ +.+|
T Consensus 105 ~~l~~ik~~G~~~gval~p~t~~e~l~~~l-------------------~~~~vD~Vl~m~v~-pG~~gq~~~~~~~~ki 164 (228)
T PTZ00170 105 AVARKIREAGMKVGVAIKPKTPVEVLFPLI-------------------DTDLVDMVLVMTVE-PGFGGQSFMHDMMPKV 164 (228)
T ss_pred HHHHHHHHCCCeEEEEECCCCCHHHHHHHH-------------------ccchhhhHHhhhcc-cCCCCcEecHHHHHHH
Confidence 344556677887776655444444443221 01235644 66766 77777433 3455
Q ss_pred HhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHhh
Q 001222 1054 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-----LTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1054 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KPi~~~~L~~~I~~l~~ 1109 (1120)
++..... .. --|.+++--..+....+.++|+|-+ |.+.-++++-...+++.++
T Consensus 165 ~~~~~~~--~~-~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 165 RELRKRY--PH-LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred HHHHHhc--cc-CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 4432211 12 3588899999999999999999965 4454456666666655554
No 317
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=24.77 E-value=6.9e+02 Score=28.32 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=51.5
Q ss_pred HhcCCEE---EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccC
Q 001222 985 EKVGATV---SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG 1061 (1120)
Q Consensus 985 ~~~g~~v---~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~ 1061 (1120)
+..+|.+ +.+++-+|+.++++. .+|+|++|-+-| -.=-++.+.+ .
T Consensus 183 ~~~~~~~kIEVEvesle~~~eAl~a------------------------gaDiImLDNm~~-e~~~~av~~l----~--- 230 (280)
T COG0157 183 AAAPFTKKIEVEVESLEEAEEALEA------------------------GADIIMLDNMSP-EELKEAVKLL----G--- 230 (280)
T ss_pred HhCCCCceEEEEcCCHHHHHHHHHc------------------------CCCEEEecCCCH-HHHHHHHHHh----c---
Confidence 3446533 468999999999964 699999996433 2222333332 1
Q ss_pred CCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1062 ARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1062 ~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
...-.++-.|+.-..+......+.|+|-+-
T Consensus 231 ~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS 260 (280)
T COG0157 231 LAGRALLEASGGITLENIREYAETGVDVIS 260 (280)
T ss_pred cCCceEEEEeCCCCHHHHHHHhhcCCCEEE
Confidence 123468889999999999999999998654
No 318
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=24.77 E-value=3.2e+02 Score=29.14 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=47.2
Q ss_pred ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC------CCCCCCHHHHHHHHHhcccccCCCCcce
Q 001222 994 VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC------QMPKMDGYEATIEIRKSESEHGARNIPI 1067 (1120)
Q Consensus 994 a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~------~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1067 (1120)
+.+-+||+.+.+. .+|+|=.=+ ..+....|++.+++++. .+||
T Consensus 99 ist~ee~~~A~~~------------------------G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-------~~pv 147 (192)
T PF04131_consen 99 ISTLEEAINAAEL------------------------GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-------DVPV 147 (192)
T ss_dssp -SSHHHHHHHHHT------------------------T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-------TSEE
T ss_pred cCCHHHHHHHHHc------------------------CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-------CCcE
Confidence 6788888888753 577775532 12233458999998863 4889
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1068 VALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1068 IalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
|+=-...++++..+|+++|++..+.
T Consensus 148 IaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 148 IAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp EEESS--SHHHHHHHHHTT-SEEEE
T ss_pred eecCCCCCHHHHHHHHhcCCeEEEE
Confidence 9888889999999999999999875
No 319
>PRK04302 triosephosphate isomerase; Provisional
Probab=24.76 E-value=7.5e+02 Score=26.79 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHh
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMVSTILRLT 1108 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi--~~~~L~~~I~~l~ 1108 (1120)
.++.+.||+.. .++||++=.+-...++..++++.|+|+++.=-. +.+.....++.+.
T Consensus 161 ~~~~~~ir~~~-----~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 161 EDAVEAVKKVN-----PDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred HHHHHHHHhcc-----CCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 34566677532 258999887778889999999999999986432 2233444444444
No 320
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.57 E-value=6.5e+02 Score=29.81 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=36.8
Q ss_pred CccEEEEeCC-------CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQ-------MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~-------MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|+|.++-. ++.-+-.++.+.+++. ++|||+ -.-.+.++..+++++|+|..+.
T Consensus 154 Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-------~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 154 GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-------DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCEEEEeccchhhhccCCcCCHHHHHHHHHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 6899999753 2222455555555542 489987 3345677888999999999865
No 321
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=24.52 E-value=2.4e+02 Score=31.67 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=48.2
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
-..+.+-+||.++.+. ..|.|.+|-.-| +-++++.+... ..+||++
T Consensus 182 gvev~t~eea~~A~~~------------------------gaDyI~ld~~~~-----e~lk~~v~~~~----~~ipi~A- 227 (265)
T TIGR00078 182 EVEVESLEEAEEAAEA------------------------GADIIMLDNMKP-----EEIKEAVQLLK----GRVLLEA- 227 (265)
T ss_pred EEEeCCHHHHHHHHHc------------------------CCCEEEECCCCH-----HHHHHHHHHhc----CCCcEEE-
Confidence 4578999999998753 689999997544 44555444321 1377766
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++.-..+......++|+|.+-+
T Consensus 228 sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 228 SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred ECCCCHHHHHHHHHcCCCEEEe
Confidence 5566788889999999998754
No 322
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=24.48 E-value=6.7e+02 Score=26.90 Aligned_cols=116 Identities=12% Similarity=0.146 Sum_probs=74.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+.+.++...-|..+...+...|..+....+.+.+. ... ..+....
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL---~~~-------------------------------~~~~pGc 51 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFL---AAA-------------------------------PLDRPGC 51 (202)
T ss_pred eEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHH---hhc-------------------------------cCCCCCe
Confidence 456677777778888888888887766544433322 110 0111246
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|+.++.+++--+...+. .......+..+..|. .-++.-+..+.|..-++.||+....++.+++.++.
T Consensus 52 lllDvrMPg~sGlelq~~L~---~~~~~~PVIfiTGhg-DIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 52 LLLDVRMPGMSGLELQDRLA---ERGIRLPVIFLTGHG-DIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred EEEecCCCCCchHHHHHHHH---hcCCCCCEEEEeCCC-ChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 78899999999865544433 222233334444443 33556677788888899999999999998887764
No 323
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.30 E-value=6.3e+02 Score=27.88 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=48.1
Q ss_pred Ccc-EEEEeCCC-CCCCH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHc-CCCEEEE------CCCCHHH
Q 001222 1031 RFD-LILMDCQM-PKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-GMNAYLT------KPIDSER 1099 (1120)
Q Consensus 1031 ~~D-lILmD~~M-P~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~------KPi~~~~ 1099 (1120)
.++ +|++|+.= ..+.| +++++++++. ..+|||+--+-.+.+|..++++. |+|+.+. .-++.++
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~------~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDA------VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 454 67766541 11223 6777888764 25899999999999999999985 9998887 4566676
Q ss_pred HHHHHH
Q 001222 1100 MVSTIL 1105 (1120)
Q Consensus 1100 L~~~I~ 1105 (1120)
+.+.+.
T Consensus 240 ~~~~~~ 245 (253)
T PRK02083 240 LKAYLA 245 (253)
T ss_pred HHHHHH
Confidence 665543
No 324
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.27 E-value=8.6e+02 Score=25.66 Aligned_cols=95 Identities=20% Similarity=0.111 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCEEEEE-CCH----HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-------C
Q 001222 978 IVACKILEKVGATVSVV-PDG----LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-------D 1045 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~~a-~ng----~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m-------d 1045 (1120)
..+....++.|..+... .+. +++..+.+ ...|+|-+. |+. .
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~------------------------~g~d~v~~~---pg~~~~~~~~~ 144 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE------------------------LGADYIGVH---TGLDEQAKGQN 144 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH------------------------cCCCEEEEc---CCcCcccCCCC
Confidence 44555667789888765 344 33333332 257888664 332 2
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHH
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTIL 1105 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~ 1105 (1120)
+.+..+++++..+ .+.|++++-...+...+++++|+|.+.. +.-++.+....++
T Consensus 145 ~~~~i~~l~~~~~------~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 145 PFEDLQTILKLVK------EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred CHHHHHHHHHhcC------CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 4555666665322 2456667888888899999999997765 4334554444443
No 325
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=24.18 E-value=6.1e+02 Score=30.66 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=64.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+.+++||-|.+. +..++.+.+.. .|.. .-..++..+.+. ..|+.++=-.
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~-------------------------~aDv~V~pS~- 340 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGT--PTVFTGMLQGDELSQAYA-------------------------SGDVFVMPSE- 340 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccC--CeEEeccCCHHHHHHHHH-------------------------HCCEEEECCc-
Confidence 468889988765 34455555433 3333 234466666664 3577775321
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
.+.=|.-+++.+- ..+|||+...... .+..+. |-.+++..|-+.++|..+|.+++.+
T Consensus 341 ~E~~g~~vlEAmA--------~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 341 SETLGFVVLEAMA--------SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred ccccCcHHHHHHH--------cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 2222444444443 2489996543332 233444 8899999999999999999988753
No 326
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=23.95 E-value=2.5e+02 Score=31.70 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=55.4
Q ss_pred ccCcEEEEEeCCHHHHHHHHHHHHhcCCE----EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 962 LEGLRILLAEDTPLIQIVACKILEKVGAT----VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 962 ~~~~~ILIVdD~~~n~~~l~~~L~~~g~~----v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
+....++.+||...-+. +|...|.. .....|.++....+...+. ...-=.++.
T Consensus 28 L~~~D~iaaEDTR~t~~----LL~~~~I~~~~is~h~hne~~~~~~li~~l~-------------------~g~~valVS 84 (275)
T COG0313 28 LKEVDVIAAEDTRVTRK----LLSHLGIKTPLISYHEHNEKEKLPKLIPLLK-------------------KGKSVALVS 84 (275)
T ss_pred HhhCCEEEEeccHHHHH----HHHHhCCCCceecccCCcHHHHHHHHHHHHh-------------------cCCeEEEEe
Confidence 44568999999987665 44555542 2234567777766654321 112345788
Q ss_pred eCCCCCCC--HHHHHHHHHhcccccCCCCcceEEEeccC
Q 001222 1038 DCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHA 1074 (1120)
Q Consensus 1038 D~~MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~ 1074 (1120)
|--||..+ |+++.+..|+. .++|+.+-+-.
T Consensus 85 DAG~P~ISDPG~~LV~~a~~~-------gi~V~~lPG~s 116 (275)
T COG0313 85 DAGTPLISDPGYELVRAAREA-------GIRVVPLPGPS 116 (275)
T ss_pred cCCCCcccCccHHHHHHHHHc-------CCcEEecCCcc
Confidence 99999874 99999999864 47888877643
No 327
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=23.89 E-value=6.4e+02 Score=27.15 Aligned_cols=96 Identities=8% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhccccc
Q 001222 982 KILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH 1060 (1120)
Q Consensus 982 ~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~ 1060 (1120)
..|++.+. -|....+.+++++.++...+ .... ++.+.|-.-++.+.++.+++..+
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~~--------------------gGi~--~iEvt~~~~~~~~~i~~l~~~~~-- 60 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIE--------------------AGFR--AIEIPLNSPDPFDSIAALVKALG-- 60 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHHH--------------------CCCC--EEEEeCCCccHHHHHHHHHHHcC--
Confidence 34444443 34556677777777765431 1333 33444555578888888876421
Q ss_pred CCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001222 1061 GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1105 (1120)
Q Consensus 1061 ~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1105 (1120)
..-+|..-.-...++...|+++|++..++ |....++.+...
T Consensus 61 ---~~~~iGaGTV~~~~~~~~a~~aGA~fivs-p~~~~~v~~~~~ 101 (206)
T PRK09140 61 ---DRALIGAGTVLSPEQVDRLADAGGRLIVT-PNTDPEVIRRAV 101 (206)
T ss_pred ---CCcEEeEEecCCHHHHHHHHHcCCCEEEC-CCCCHHHHHHHH
Confidence 11244444445677888999999965555 765555555443
No 328
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.81 E-value=3.5e+02 Score=30.42 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=47.7
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
...+.+-+|+.+++.. .+|+|.+|-.-| |-++++.+.-+.. .++||+ .
T Consensus 185 ~vev~t~eea~~A~~~------------------------gaD~I~ld~~~~-----e~l~~~v~~i~~~--~~i~i~-a 232 (269)
T cd01568 185 EVEVETLEEAEEALEA------------------------GADIIMLDNMSP-----EELKEAVKLLKGL--PRVLLE-A 232 (269)
T ss_pred EEecCCHHHHHHHHHc------------------------CCCEEEECCCCH-----HHHHHHHHHhccC--CCeEEE-E
Confidence 4567899999998753 689999997555 3344433321111 356654 5
Q ss_pred eccCCHHHHHHHHHcCCCEEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++.-..+...+..++|+|.+-+
T Consensus 233 sGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 233 SGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred ECCCCHHHHHHHHHcCCCEEEE
Confidence 6667788899999999998753
No 329
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.78 E-value=1.1e+03 Score=28.45 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=61.3
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhc--CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAEDTP---LIQIVACKILEKV--GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD~~---~n~~~l~~~L~~~--g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..|+++|--. ....-+.+.+++. +..+. -+.+.++|..+++. ..|.|.
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a------------------------GaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV------------------------GADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc------------------------CCCEEE
Confidence 56778777522 2222222333332 22333 37788888888753 577776
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.-+. |+ ..-++++..+++.... ..+|||+=-+-....|..+|+.+||+.++.
T Consensus 221 vG~g-~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~---~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 221 VGIG-PGSICTTRIVAGVGVPQITAICDVYEVCKN---TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred ECCC-CCcCCcceeecCCCCChHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4321 11 0134455555543222 258999999999999999999999998875
No 330
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=23.59 E-value=4.7e+02 Score=26.61 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=40.6
Q ss_pred CccEEEEeCCCCCCCHH-------HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPKMDGY-------EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~-------e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|.++...+...+. ...+.++.. ..+||++..+-...++..++++.|+|.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG------SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc------CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 57999988877755432 334444432 358999988887779999999999998864
No 331
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.44 E-value=1.3e+02 Score=34.31 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
..++++|+... .++|||+..+-.+.+|..+++.+|||...
T Consensus 231 ~~v~~~~~~~~----~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 231 GNVRTFRRLLP----SEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHHHHHhcC----CCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 44455554321 25999999999999999999999999864
No 332
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.43 E-value=9e+02 Score=25.57 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHHhhcCC
Q 001222 454 AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 533 (1120)
Q Consensus 454 ~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~~v~~~~~~~a~~k~ 533 (1120)
.+|...+|+|.++.. ++.+..+..|.+++..... -|.|-|+--|.--- -..++..++-+ +++. ......
T Consensus 2 GAI~NGLELL~~~~~--~~~~~~~~LI~~Sa~~A~a----Rl~F~RlAFGaag~-~~~i~~~e~~~-~~~~---~~~~~r 70 (182)
T PF10090_consen 2 GAINNGLELLDDEGD--PEMRPAMELIRESARNASA----RLRFFRLAFGAAGS-GQQIDLGEARS-VLRG---YFAGGR 70 (182)
T ss_pred cchhhhHHHHcCCCC--ccchHHHHHHHHHHHHHHH----HHHHHHHHcCCCCC-CCCCCHHHHHH-HHHH---HHhCCc
Confidence 468888998865443 2333367778888776654 35566666555433 45677655433 3332 233445
Q ss_pred cEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhh
Q 001222 534 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQA 612 (1120)
Q Consensus 534 i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (1120)
+++...++... .+ ...-+++.|++-=|...-|.|+ |.|.+..
T Consensus 71 ~~l~W~~~~~~-----~~-k~~vklllnl~l~a~~alprGG~i~V~~~~------------------------------- 113 (182)
T PF10090_consen 71 ITLDWQVERDL-----LP-KPEVKLLLNLLLCAEDALPRGGEITVSIEG------------------------------- 113 (182)
T ss_pred eEEEccCcccc-----CC-HHHHHHHHHHHHHHHhhcCCCCEEEEEEec-------------------------------
Confidence 67766655441 12 2344899999999999988775 4443211
Q ss_pred ccccccccCCceEEEEEEEeCCC--CCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEe
Q 001222 613 NNAMNFREDNKLALCFEVDDTGC--GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 686 (1120)
Q Consensus 613 ~~~~~~~~~~~~~l~~~V~DtG~--GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~ 686 (1120)
..+. ..|.|.=+|. -++++.+.-+--.- ..........=-+....+++..|++|.++..
T Consensus 114 -------~~~~--~~~~v~a~G~~~~~~~~~~~~L~g~~------~~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 114 -------SEGD--GGWRVRAEGPRARLDPDLWAALAGED------PEEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred -------cCCC--ceEEEEEeccccCCCHHHHHHhcCCC------CCCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 1112 2355666665 45666555442111 0111223345577888999999999999754
No 333
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=23.15 E-value=40 Score=42.39 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCChhhHh-----------hhhcccccCC---CCCCCCCCCccchHHHHHHHHHHcC
Q 001222 627 CFEVDDTGCGIDQSKWE-----------TVFESFEQGD---PSTTRKHGGTGLGLSIVRTLVNKMG 678 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~-----------~IFe~F~q~~---~s~~~~~~GtGLGLaIvk~LVe~mG 678 (1120)
.++|.|+|.|||-+..+ -||.-...+. ....-..|-.|.|.+.|.-|-+.+-
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 37999999999986442 2232221111 1111123458999999887766553
No 334
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=23.00 E-value=1e+02 Score=37.86 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.5
Q ss_pred CcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHH
Q 001222 229 NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMK 267 (1120)
Q Consensus 229 ~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~ 267 (1120)
-...+++..||+|+ +|+.+|||.|...+..+.+.+.
T Consensus 135 lg~s~R~~~PI~d~---~g~~IGvVsVG~~l~~i~~~i~ 170 (537)
T COG3290 135 LGKSLRAKVPIFDE---DGKQIGVVSVGYLLSEIDDVIL 170 (537)
T ss_pred chhhheeecceECC---CCCEEEEEEEeeEhhhHHHHHH
Confidence 35688899999998 8999999999988886666543
No 335
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=22.95 E-value=9.1e+02 Score=25.50 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=63.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
-+++|+.+++..+..+..+++..| |.|..+.+-+++++-++. ....+.|+..+...+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------------------~G~vvhLtmyga~~~ 90 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------------------GGIVVHLTMYGENIQ 90 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------------------CCcEEEEEEecCCcc
Confidence 479999999999999999999987 669999999999998862 234689999999886
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHH
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1081 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~ 1081 (1120)
. .+ ..||+.... ...-+|++.|...+.+.-+
T Consensus 91 ~--~~---~~ir~~~~~---~~p~LIvvGg~gvp~evye 121 (176)
T PRK03958 91 D--VE---PEIREAHRK---GEPLLIVVGAEKVPREVYE 121 (176)
T ss_pred c--hH---HHHHHhhcc---CCcEEEEEcCCCCCHHHHh
Confidence 5 44 455542211 1122444556666665544
No 336
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.89 E-value=9.9e+02 Score=25.90 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhccccc
Q 001222 982 KILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH 1060 (1120)
Q Consensus 982 ~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~ 1060 (1120)
..|.+.+. -|....+.++|++..+...+ ..+++|=.=+.-| ++.++++++|+..
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~--------------------~Gi~~iEitl~~~--~~~~~I~~l~~~~--- 64 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVA--------------------GGLPVLEVTLRTP--AALEAIRLIAKEV--- 64 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHH--------------------cCCCEEEEecCCc--cHHHHHHHHHHHC---
Confidence 44555553 46667888889888875431 2466654444444 7999999998743
Q ss_pred CCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHH
Q 001222 1061 GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1102 (1120)
Q Consensus 1061 ~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~ 1102 (1120)
+++ +|..-.-.+.++.+++.++|++-.++-=++. ++.+
T Consensus 65 --p~~-~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~-~vi~ 102 (212)
T PRK05718 65 --PEA-LIGAGTVLNPEQLAQAIEAGAQFIVSPGLTP-PLLK 102 (212)
T ss_pred --CCC-EEEEeeccCHHHHHHHHHcCCCEEECCCCCH-HHHH
Confidence 233 3333334556788899999998666644555 4443
No 337
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=22.86 E-value=99 Score=32.98 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=31.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHH
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 1004 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l 1004 (1120)
|||||.....-.-+...|+++|+++.+..+.+..++.+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~ 39 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI 39 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999999988899999999999999988765444444
No 338
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=22.82 E-value=6.3e+02 Score=31.56 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=52.1
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHH-cCCCEEEE------CCCCHHHHH
Q 001222 1032 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG-VGMNAYLT------KPIDSERMV 1101 (1120)
Q Consensus 1032 ~DlILmD~~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~------KPi~~~~L~ 1101 (1120)
=.+++.|+..-+| .| +|+++.+++. ..+|||+..+-...++..++++ .|+|+-+. +-++..+++
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~------~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k 526 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDA------VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVK 526 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHH
Confidence 3699999987665 46 5677888764 3599999999999999999997 56777665 556777777
Q ss_pred HHHHH
Q 001222 1102 STILR 1106 (1120)
Q Consensus 1102 ~~I~~ 1106 (1120)
..+..
T Consensus 527 ~~l~~ 531 (538)
T PLN02617 527 EHLLE 531 (538)
T ss_pred HHHHH
Confidence 66543
No 339
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.62 E-value=3.8e+02 Score=29.39 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=41.6
Q ss_pred Ccc-EEEEeCCCCC-CC--HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFD-LILMDCQMPK-MD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~-md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+| +++.|+.--. .. -++++++|++. ..+||++--+-.+.++..++++.|++..+.
T Consensus 40 G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~------~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 40 GADELVFLDITASSEGRETMLDVVERVAEE------VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCEEEEEcCCcccccCcccHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 444 7888887421 11 26678888764 248999999889999999999999987764
No 340
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.39 E-value=3.2e+02 Score=30.75 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.9
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
++.+++||+..+ .++|||+..+-.+.++..+++.+|||...
T Consensus 230 ~~~v~~i~~~~~----~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQ----LDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcC----CCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 566777776421 25999999999999999999999998764
No 341
>PRK05637 anthranilate synthase component II; Provisional
Probab=22.28 E-value=2.4e+02 Score=30.41 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=29.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGL 998 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~ 998 (1120)
+||++|-..-+-.-+...|+++|+.+.++.+..
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~ 35 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTV 35 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCC
Confidence 799999988888889999999999999887753
No 342
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.23 E-value=4.1e+02 Score=29.02 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1032 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1032 ~DlILmD~~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-.+|++|+.=-++ .| +|+++++++.. ++|+|+--+-.+.+|..++.+.|+++.+.
T Consensus 162 ~~ii~tdi~~dGt~~G~d~~~~~~l~~~~------~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 162 GEIILTDIDRDGTMQGPDLELLKQLAEAV------NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp SEEEEEETTTTTTSSS--HHHHHHHHHHH------SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cEEEEeeccccCCcCCCCHHHHHHHHHHc------CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 4689999976543 33 67788887642 58999999999999999999999999875
No 343
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=22.10 E-value=2.5e+02 Score=34.16 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=39.7
Q ss_pred CccEEEEeCCCCC-CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1031 RFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1031 ~~DlILmD~~MP~-mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
..|+|.+|+.=+. ..-.+.+++||+.. +++|||+ -.-.+.++...+.++|+|...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~-----~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTY-----PDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhC-----CCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 6999999994332 24567778887642 3688887 333567788899999999983
No 344
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=22.08 E-value=7.2e+02 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=39.8
Q ss_pred CccEEEEeCCCCC--CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE
Q 001222 1031 RFDLILMDCQMPK--MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1090 (1120)
Q Consensus 1031 ~~DlILmD~~MP~--mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1090 (1120)
.+|.|.+| +|.. .|..+.++++|+.-...+.+++ .|..|+.-+.+...+..+.|+|-|
T Consensus 211 ~~d~I~lD-n~~~~~G~~~~~~~~~~~~l~~~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 211 KLDGVRLD-TPSSRRGVFRYLIREVRWALDIRGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred CCcEEEEC-CCCCCCCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 58999999 4531 2356666777765432222344 577788888888889899998876
No 345
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.88 E-value=5.7e+02 Score=28.01 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=65.2
Q ss_pred HHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHH-------HHHH
Q 001222 980 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE-------ATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e-------~~~~ 1052 (1120)
+-..+++.|..+-.|-|...-++.+...+ ...|+|+.=.-=|+-.|-. =+++
T Consensus 102 ~l~~Ir~~g~k~GlalnP~T~~~~i~~~l---------------------~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 102 TIQLIKSHGCQAGLVLNPATPVDILDWVL---------------------PELDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred HHHHHHHCCCceeEEeCCCCCHHHHHHHH---------------------hhcCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 34667788998888877766666665432 2467655433347766633 3344
Q ss_pred HHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHH
Q 001222 1053 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-----LTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1053 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KPi~~~~L~~~I~~l 1107 (1120)
+|+.....+ . -..|.+.+....+...+|.++|+|-+ |.|.-++.+-...+++.
T Consensus 161 l~~~~~~~~-~-~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 161 IRKKIDALG-K-PIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218 (223)
T ss_pred HHHHHHhcC-C-CeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 444422221 1 24688999999999999999999965 44443555555555444
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.87 E-value=6.1e+02 Score=31.63 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=57.2
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+|.+++-|.. ....+..+-+.+|+.+..+.+..+..+.+++. ..+|+||+|.
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l----------------------~~~DLVLIDT- 436 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL----------------------RDYKLVLIDT- 436 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh----------------------ccCCEEEecC-
Confidence 357888775542 12334444455677888888877777766542 3699999997
Q ss_pred CCCCCHHH-----HHHHHHhcccccCCCCcceEEEeccCCHHHHHHHH----HcCCCEEEECCCC
Q 001222 1041 MPKMDGYE-----ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPID 1096 (1120)
Q Consensus 1041 MP~mdG~e-----~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KPi~ 1096 (1120)
|++...+ .+..|+... ..-.++++.+.....+..+.+ ..+.+.+|.=-++
T Consensus 437 -aG~s~~D~~l~eeL~~L~aa~-----~~a~lLVLpAtss~~Dl~eii~~f~~~~~~gvILTKlD 495 (559)
T PRK12727 437 -AGMGQRDRALAAQLNWLRAAR-----QVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLD 495 (559)
T ss_pred -CCcchhhHHHHHHHHHHHHhh-----cCCcEEEEECCCChhHHHHHHHHHHhhCCeEEEEecCc
Confidence 4443322 223344321 123466677666554444332 2355555443343
No 347
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=21.82 E-value=3.3e+02 Score=29.22 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=43.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE--ECCCCHHHHHHHHHH
Q 001222 1035 ILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL--TKPIDSERMVSTILR 1106 (1120)
Q Consensus 1035 ILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL--~KPi~~~~L~~~I~~ 1106 (1120)
=+.|...---..++-++.||+.. .+||++...-.+......|+++|+|..+ ..-++.+.+...+..
T Consensus 49 ~v~~~~~~~~g~~~~~~~i~~~v------~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 49 SVLTEPKYFQGSLEDLRAVREAV------SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred EEEeCccccCCCHHHHHHHHHhc------CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 34455444445678888998742 5899976655566678889999999998 333344455444443
No 348
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=21.79 E-value=7.3e+02 Score=26.70 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred CCccEEEEeCCCCC---------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHH---HHHcCCCEEEECCCC-
Q 001222 1030 PRFDLILMDCQMPK---------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK---CLGVGMNAYLTKPID- 1096 (1120)
Q Consensus 1030 ~~~DlILmD~~MP~---------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~KPi~- 1096 (1120)
..+|.|++|++-.. .+-.++++.++.... ....++|=+-+. +.....+ +++.|+++.+.-=++
T Consensus 20 ~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~---~~~~~~VRvn~~-~~~~~~~Dl~~l~~g~~gI~lP~ves 95 (221)
T PF03328_consen 20 SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA---AGSEIIVRVNSL-DSPHIERDLEALDAGADGIVLPKVES 95 (221)
T ss_dssp TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT---SSSEEEEE-SST-TCHHHHHHHHHHHTTSSEEEETT--S
T ss_pred cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc---ccccceecCCCC-CcchhhhhhhhcccCCCeeeccccCc
Confidence 37999999999766 444566666654221 111234444443 3334455 999999998886564
Q ss_pred HHHHHHHHHHHhhc
Q 001222 1097 SERMVSTILRLTKN 1110 (1120)
Q Consensus 1097 ~~~L~~~I~~l~~~ 1110 (1120)
.+++...+ +.++.
T Consensus 96 ~~~~~~~~-~~~~~ 108 (221)
T PF03328_consen 96 AEDARQAV-AALRY 108 (221)
T ss_dssp HHHHHHHH-HHHSH
T ss_pred HHHHHHHH-HHHhh
Confidence 55555444 44443
No 349
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=21.63 E-value=9.9e+02 Score=26.44 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=63.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECC--HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPD--GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~n--g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+++++.+.+......... .....|..... ..+..+.+. ..|+.++=-..
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~-------------------------~ad~~i~ps~~ 272 (359)
T cd03823 220 DIELVIVGNGLELEEESYEL--EGDPRVEFLGAYPQEEIDDFYA-------------------------EIDVLVVPSIW 272 (359)
T ss_pred CcEEEEEcCchhhhHHHHhh--cCCCeEEEeCCCCHHHHHHHHH-------------------------hCCEEEEcCcc
Confidence 46777877665543322211 23334444443 355555554 35777753222
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
.+.-|.-+++.+. ..+|||+.. ... ..+.++.|.++++.+|-+.++|.++|..++..
T Consensus 273 ~e~~~~~~~Ea~a--------~G~Pvi~~~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 273 PENFPLVIREALA--------AGVPVIASD-IGG---MAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred cCCCChHHHHHHH--------CCCCEEECC-CCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 2334455555554 247888633 222 33446667889999999999999999998863
No 350
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=21.52 E-value=5.8e+02 Score=28.56 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe---CCCCCCCHHHHHHHH
Q 001222 978 IVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMPKMDGYEATIEI 1053 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD---~~MP~mdG~e~~~~I 1053 (1120)
..+...-..+|.++. .+.|.+|+-.++.. ..++|=.. +.--..| .+.+.++
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~------------------------~a~iiGINnRdL~tf~vd-~~~~~~l 202 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA------------------------GADIIGINNRDLKTFEVD-LNRTEEL 202 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT------------------------T-SEEEEESBCTTTCCBH-THHHHHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc------------------------CCCEEEEeCccccCcccC-hHHHHHH
Confidence 344455567898754 68999998777742 45666543 3333333 5666677
Q ss_pred HhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1054 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1054 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
+..-+ .++.+|+-++-.+.++..++.++|+|++|.-
T Consensus 203 ~~~ip----~~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 203 APLIP----KDVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp HCHSH----TTSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred HhhCc----cceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 76543 2467888899999999999999999999974
No 351
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=21.48 E-value=2.5e+02 Score=29.65 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=27.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPD 996 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~n 996 (1120)
+||||+|-....-.-+...|++.|+++.+...
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 58999998777777799999999998887764
No 352
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=21.46 E-value=8.6e+02 Score=26.58 Aligned_cols=109 Identities=13% Similarity=0.231 Sum_probs=65.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+.+++++.+.+. ...+....++.+. .+.......+..+.+. ..|+++.-...
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------------------~ad~~i~ps~~ 262 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYA-------------------------KASIFVLTSRF 262 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHH-------------------------hCCEEEeCccc
Confidence 457777776544 3344455566554 3444444344445553 36887776544
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
..+ |.-+++.+- ..+|||+.......+ ...+.|-.+++.+|-+.+++.++|.+++.+
T Consensus 263 e~~-~~~~~Ea~a--------~G~Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 263 EGF-PMVLLEAMA--------FGLPVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred ccc-CHHHHHHHH--------cCCCEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 222 444555443 248888654333333 234556689999999999999999998754
No 353
>PLN02366 spermidine synthase
Probab=21.35 E-value=5.6e+02 Score=29.49 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-----CEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-----ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1038 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-----~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD 1038 (1120)
.+|-+||=++....+.++.+...+ -.+. ...|+.+.++... ...||+|++|
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----------------------~~~yDvIi~D 172 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----------------------EGTYDAIIVD 172 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----------------------CCCCCEEEEc
Confidence 479999999988888888886532 1233 3566666554221 2479999999
Q ss_pred CCCCCCCH-----HHHHHHHHhccc
Q 001222 1039 CQMPKMDG-----YEATIEIRKSES 1058 (1120)
Q Consensus 1039 ~~MP~mdG-----~e~~~~IR~~~~ 1058 (1120)
+.-|..-. -++.+.+++.-.
T Consensus 173 ~~dp~~~~~~L~t~ef~~~~~~~L~ 197 (308)
T PLN02366 173 SSDPVGPAQELFEKPFFESVARALR 197 (308)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcC
Confidence 87664322 245666665433
No 354
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=21.30 E-value=80 Score=35.00 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=21.2
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 662 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 662 GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
.+||||+||++|++- .+.--.+++.+-.+.
T Consensus 12 nSglGl~i~~RLl~~----------~De~~~ltl~ltcR~ 41 (341)
T KOG1478|consen 12 NSGLGLAICKRLLAE----------DDENVRLTLCLTCRN 41 (341)
T ss_pred CCcccHHHHHHHHhc----------cCCceeEEEEEEeCC
Confidence 579999999999976 333445666665544
No 355
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=21.15 E-value=7.4e+02 Score=32.12 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=75.8
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 714 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 714 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
.+..+++.++....+..+...+...|..+..+.........+ ...+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~----------------------------------~~~~ 569 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMF----------------------------------DPDE 569 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh----------------------------------hcCC
Confidence 345678888888889999999988887766555433322211 0234
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++++|+.++++++......++..........+..+ ..... ....+....|.+-++.||+....+...+.....
T Consensus 570 ~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~-ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 570 YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVAL-TANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEE-ECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 5788999999998875544444322111110122222 22222 233456678888999999999999988877654
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=21.13 E-value=6.9e+02 Score=28.10 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=57.2
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHH---H-HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGL---Q-AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD~~~---n~~~l~~~L~~~g~~v~~a~ng~---e-Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+.+|++++-|.. ....++...+..|..+.....+. . +.+.+... ....||+||
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~--------------------~~~~~D~Vi 159 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA--------------------KARNIDVVL 159 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH--------------------HHCCCCEEE
Confidence 579999997652 34555666677786665543331 1 22333211 013699999
Q ss_pred EeCCCCCCCH--HHHHHHHHhcccc-----cCCCCcceEEEeccCCHHHHHHH---H-HcCCCEEEECCCC
Q 001222 1037 MDCQMPKMDG--YEATIEIRKSESE-----HGARNIPIVALTAHAMNADEKKC---L-GVGMNAYLTKPID 1096 (1120)
Q Consensus 1037 mD~~MP~mdG--~e~~~~IR~~~~~-----~~~~~ipIIalTa~~~~~~~~~~---l-~aG~d~yL~KPi~ 1096 (1120)
.|. |+... -....++++.... ...++-.++++.+....++...+ . ..|.++.+.=-++
T Consensus 160 IDT--~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlD 228 (272)
T TIGR00064 160 IDT--AGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLD 228 (272)
T ss_pred EeC--CCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccC
Confidence 997 33322 2233333332110 00134457778877655444433 2 2567776654343
No 357
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.93 E-value=3.1e+02 Score=31.34 Aligned_cols=67 Identities=15% Similarity=0.020 Sum_probs=47.7
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
.+.+++-+||.+++.. ..|+|++|-+-| -+=-++.+.++. -.++..
T Consensus 201 eVEv~tleea~~a~~a------------------------gaDiImLDnmsp-e~l~~av~~~~~---------~~~lea 246 (290)
T PRK06559 201 EVEVESLAAAEEAAAA------------------------GADIIMLDNMSL-EQIEQAITLIAG---------RSRIEC 246 (290)
T ss_pred EEECCCHHHHHHHHHc------------------------CCCEEEECCCCH-HHHHHHHHHhcC---------ceEEEE
Confidence 4568999999999863 689999995433 233333333331 247888
Q ss_pred eccCCHHHHHHHHHcCCCEEE
Q 001222 1071 TAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL 1091 (1120)
++.-..+......+.|+|-.-
T Consensus 247 SGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 247 SGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred ECCCCHHHHHHHHhcCCCEEE
Confidence 899999999999999998654
No 358
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.88 E-value=2.7e+02 Score=29.73 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCEEEEE--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-----CCHHHHHH
Q 001222 979 VACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-----MDGYEATI 1051 (1120)
Q Consensus 979 ~l~~~L~~~g~~v~~a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~-----mdG~e~~~ 1051 (1120)
-..+.|++.|+.+..- ..+...++.+.. -+||.|=+|..+.. .....+++
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-----------------------~~~d~iKld~~~~~~~~~~~~~~~~l~ 192 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR-----------------------LPVDYLKIDRSFVRDIETDPEDRAIVR 192 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh-----------------------CCCCEEEECHHHHHhHhcChhhHHHHH
Confidence 3455678889987764 455666666654 26999999965431 23355666
Q ss_pred HHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCC----EEEECCCCHH
Q 001222 1052 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSE 1098 (1120)
Q Consensus 1052 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KPi~~~ 1098 (1120)
.|...... ..+++| .++-.+.++...+.+.|++ .|+.||.+.+
T Consensus 193 ~l~~~~~~---~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 193 AIIALAHS---LGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHH---CCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 66654332 235554 5777888889999999995 3566777643
No 359
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.68 E-value=3e+02 Score=29.15 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGL 998 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~ 998 (1120)
|+|+|=-.-|-..+.+.|++.|+++..+.+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888889999999999999999998754
No 360
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.67 E-value=6.3e+02 Score=28.73 Aligned_cols=106 Identities=25% Similarity=0.285 Sum_probs=65.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+++++.+.+. ...++.+.++.|. .|.....-.+..+.+. ..|+.++=-. .
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------------------~~d~~v~ps~-~ 280 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS-------------------------IADLFLLPSE-K 280 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH-------------------------hcCEEEeCCC-c
Confidence 46777766543 3445666666664 3555554444444443 3577776432 2
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+.-|.-+++.+. ..+|+|+..... ..+.+..|.++++.+|-+.+++..+|..++.
T Consensus 281 E~~~~~~~EAma--------~g~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 281 ESFGLAALEAMA--------CGVPVVASNAGG----IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CCCccHHHHHHH--------cCCCEEEeCCCC----chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 333555555544 248988743322 3345677889999999999999999988875
No 361
>PRK14098 glycogen synthase; Provisional
Probab=20.66 E-value=7.6e+02 Score=30.28 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=64.1
Q ss_pred CcEEEEEeCCHH-HHHHHHHHHHhcCCEEEEE--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPL-IQIVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~-n~~~l~~~L~~~g~~v~~a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
+.+++|+-+-+. .+..++.+.++.+-.|... -+..++-+.+. ..|+.+|=-
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a-------------------------~aDi~l~PS- 389 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA-------------------------GLDMLLMPG- 389 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH-------------------------hCCEEEeCC-
Confidence 457888876442 4556666666655444433 34444445553 468888532
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
..+.-|...+..++. .+|+|+...-...+......+.|.++|+..|.+.+.|..+|.+++
T Consensus 390 ~~E~~Gl~~lEAma~--------G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 390 KIESCGMLQMFAMSY--------GTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred CCCCchHHHHHHHhC--------CCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 233446666666652 245554332222222222222367899999999999999998765
No 362
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.60 E-value=4.1e+02 Score=28.50 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=52.7
Q ss_pred HHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhccccc
Q 001222 982 KILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH 1060 (1120)
Q Consensus 982 ~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~ 1060 (1120)
..|++.+.- |....+.++|++..+...+ ..+. ++.+.|-.-+.+++++++|+..+
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~~--------------------gGi~--~iEiT~~t~~a~~~I~~l~~~~p-- 58 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALIE--------------------GGIR--AIEITLRTPNALEAIEALRKEFP-- 58 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHHH--------------------TT----EEEEETTSTTHHHHHHHHHHHHT--
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHHH--------------------CCCC--EEEEecCCccHHHHHHHHHHHCC--
Confidence 344544432 3345566667666654321 1334 34555555678999998987532
Q ss_pred CCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Q 001222 1061 GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVST 1103 (1120)
Q Consensus 1061 ~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~ 1103 (1120)
++ +|..-.--+.++.++|.++|++-.++-=++.+-+..+
T Consensus 59 ---~~-~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 59 ---DL-LVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYA 97 (196)
T ss_dssp ---TS-EEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHH
T ss_pred ---CC-eeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 33 4555555677888999999998777754555444433
No 363
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.53 E-value=2.6e+02 Score=29.86 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCH
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDG 997 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng 997 (1120)
++|+|+|=.--|...+...|++.|+++....+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 489999999999999999999999999988753
No 364
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.52 E-value=2.7e+02 Score=29.75 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC---CCCCHHHHHHHHHhcccccCCCC
Q 001222 988 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM---PKMDGYEATIEIRKSESEHGARN 1064 (1120)
Q Consensus 988 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M---P~mdG~e~~~~IR~~~~~~~~~~ 1064 (1120)
++.|....+-+++-+.++. ..|+|=+|+.. | ..-.++.++||+. .
T Consensus 45 ~~~V~ITPT~~ev~~l~~a------------------------GadIIAlDaT~R~Rp-~~l~~li~~i~~~-------~ 92 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA------------------------GADIIALDATDRPRP-ETLEELIREIKEK-------Y 92 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC------------------------T-SEEEEE-SSSS-S-S-HHHHHHHHHHC-------T
T ss_pred CCCeEECCCHHHHHHHHHc------------------------CCCEEEEecCCCCCC-cCHHHHHHHHHHh-------C
Confidence 4678888899998888863 68999999987 6 7788899999863 1
Q ss_pred cceEEEeccCCHHHHHHHHHcCCCEEE
Q 001222 1065 IPIVALTAHAMNADEKKCLGVGMNAYL 1091 (1120)
Q Consensus 1065 ipIIalTa~~~~~~~~~~l~aG~d~yL 1091 (1120)
..++..-++.++...|.++|+|-.=
T Consensus 93 --~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 93 --QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp --SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred --cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 4455566788899999999987543
No 365
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=20.38 E-value=2.2e+02 Score=31.56 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=47.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-----CE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCC-CccEEEE
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-----AT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTP-RFDLILM 1037 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-----~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~DlILm 1037 (1120)
.+|-+||=++...++.++++.... -. -....||.+-++.. .. .||+|++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------------------------~~~~yDvIi~ 156 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------------------------QEEKYDVIIV 156 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------------------------SST-EEEEEE
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------------------------cCCcccEEEE
Confidence 479999999999999999886532 12 23667776655432 12 7999999
Q ss_pred eCCCCCCCH-----HHHHHHHHhccc
Q 001222 1038 DCQMPKMDG-----YEATIEIRKSES 1058 (1120)
Q Consensus 1038 D~~MP~mdG-----~e~~~~IR~~~~ 1058 (1120)
|+--|...+ -|+.+.+++.-.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLK 182 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcC
Confidence 999887654 466666665433
No 366
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=20.23 E-value=89 Score=42.90 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=30.6
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCCC---CCCC-CCCccchHHHHHHHHHHc
Q 001222 627 CFEVDDTGCGIDQSKWE--------TVFESFEQGDPS---TTRK-HGGTGLGLSIVRTLVNKM 677 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~~~s---~~~~-~~GtGLGLaIvk~LVe~m 677 (1120)
.|+|.|+|.|||-+.-+ -||.-...+..- ..+- .|-.|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 38999999999976432 245433322211 1111 233699999988776654
No 367
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.10 E-value=2.5e+02 Score=31.65 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1117 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1117 (1120)
.+.+++|+..+ +-.+|.++.+.. ++..++.++|+|..+.=|+.++.+.+.+..+-.+.+-+++|
T Consensus 166 ~av~~~r~~~~-----~~~~Igvev~t~-eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~~~~ipi~AsG 229 (265)
T TIGR00078 166 KAVKRARAAAP-----FALKIEVEVESL-EEAEEAAEAGADIIMLDNMKPEEIKEAVQLLKGRVLLEASG 229 (265)
T ss_pred HHHHHHHHhCC-----CCCeEEEEeCCH-HHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEC
Confidence 35677776532 234688888755 56778999999999999999999998887653334445444
No 368
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=20.04 E-value=6.3e+02 Score=22.50 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=43.6
Q ss_pred hHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHH
Q 001222 445 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 524 (1120)
Q Consensus 445 ~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~~v~~~ 524 (1120)
+.|=+|+=|..|.+++.+-. ....+++.+..+..+..-...+. ++-+.|--+ + ....+++.+.+++++..
T Consensus 2 ~~HRVkNnLq~i~sll~lq~-~~~~~~e~~~~L~~~~~RI~aia-~vh~~L~~~----~----~~~~v~l~~yl~~L~~~ 71 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQA-RRSEDPEAREALEDAQNRIQAIA-LVHEQLYQS----E----DLSEVDLREYLEELCED 71 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHhcC----C----CCCeecHHHHHHHHHHH
Confidence 57999999999999998644 33344555555444443333332 223322211 1 23578999999998876
Q ss_pred HH
Q 001222 525 FS 526 (1120)
Q Consensus 525 ~~ 526 (1120)
+.
T Consensus 72 l~ 73 (76)
T PF07568_consen 72 LR 73 (76)
T ss_pred HH
Confidence 53
Done!