Query 001222
Match_columns 1120
No_of_seqs 677 out of 5498
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 1.8E-38 6.2E-43 349.3 31.4 233 429-701 11-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 3.4E-33 1.2E-37 308.3 33.2 227 429-702 31-258 (268)
3 3jz3_A Sensor protein QSEC; he 100.0 1.2E-34 4.2E-39 309.9 13.9 217 438-702 2-219 (222)
4 2e0a_A Pyruvate dehydrogenase 100.0 8.5E-33 2.9E-37 323.9 26.9 220 439-701 96-351 (394)
5 2btz_A Pyruvate dehydrogenase 100.0 7E-33 2.4E-37 324.6 24.4 220 439-701 96-351 (394)
6 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.8E-32 6E-37 320.6 23.8 226 433-701 116-374 (388)
7 2q8g_A [pyruvate dehydrogenase 100.0 3.4E-32 1.2E-36 320.2 24.5 220 440-701 107-364 (407)
8 1y8o_A [pyruvate dehydrogenase 100.0 1.1E-31 3.7E-36 317.0 23.6 220 439-701 119-375 (419)
9 3d36_A Sporulation kinase B; G 100.0 2.2E-31 7.4E-36 288.9 23.6 216 435-702 11-227 (244)
10 3a0r_A Sensor protein; four he 100.0 3.6E-31 1.2E-35 302.8 22.1 216 435-701 129-346 (349)
11 4fpp_A Phosphotransferase; fou 100.0 2.1E-29 7E-34 276.4 23.5 196 440-698 48-246 (247)
12 1b3q_A Protein (chemotaxis pro 99.9 2.3E-26 7.7E-31 267.8 18.5 202 436-701 8-249 (379)
13 3to5_A CHEY homolog; alpha(5)b 99.9 8.3E-26 2.9E-30 223.9 17.8 122 963-1110 11-133 (134)
14 1ysr_A Sensor-type histidine k 99.9 3.8E-23 1.3E-27 207.8 19.0 146 508-700 4-149 (150)
15 1id0_A PHOQ histidine kinase; 99.9 5.2E-23 1.8E-27 206.9 19.7 146 510-702 2-147 (152)
16 3ehh_A Sensor kinase (YOCF pro 99.9 8.9E-23 3E-27 217.9 21.4 190 436-700 26-216 (218)
17 3mm4_A Histidine kinase homolo 99.9 5.8E-23 2E-27 218.6 16.3 137 964-1113 61-199 (206)
18 3sl2_A Sensor histidine kinase 99.9 1.9E-22 6.6E-27 208.7 17.3 151 511-701 2-153 (177)
19 3a0y_A Sensor protein; ATP-LID 99.9 3.8E-22 1.3E-26 200.2 18.9 147 507-701 1-149 (152)
20 1bxd_A ENVZ(290-450), protein 99.9 3E-22 1E-26 203.9 17.2 149 506-702 4-152 (161)
21 1r62_A Nitrogen regulation pro 99.9 3E-22 1E-26 202.6 15.7 156 506-700 2-159 (160)
22 3luf_A Two-component system re 99.9 4.8E-20 1.6E-24 203.3 28.1 123 964-1111 124-246 (259)
23 2lpm_A Two-component response 99.9 4.5E-23 1.5E-27 200.9 2.4 114 964-1110 8-122 (123)
24 1i58_A Chemotaxis protein CHEA 99.9 1.3E-21 4.3E-26 204.8 12.3 150 509-699 2-188 (189)
25 3gl9_A Response regulator; bet 99.8 4.4E-20 1.5E-24 178.6 17.6 119 965-1109 3-121 (122)
26 3t6k_A Response regulator rece 99.8 1.5E-19 5.2E-24 178.3 18.3 125 964-1114 4-128 (136)
27 2r25_B Osmosensing histidine p 99.8 2.2E-19 7.7E-24 176.4 17.8 126 964-1111 2-128 (133)
28 2ayx_A Sensor kinase protein R 99.8 2.6E-18 8.9E-23 188.8 27.2 120 963-1110 128-247 (254)
29 3f6p_A Transcriptional regulat 99.8 3.3E-19 1.1E-23 171.8 17.2 117 965-1110 3-119 (120)
30 3n0r_A Response regulator; sig 99.8 3E-20 1E-24 208.0 11.0 119 964-1113 160-280 (286)
31 3h1g_A Chemotaxis protein CHEY 99.8 4.5E-19 1.5E-23 172.9 17.9 122 964-1110 5-127 (129)
32 3m6m_D Sensory/regulatory prot 99.8 3.8E-19 1.3E-23 177.1 17.2 126 962-1111 12-137 (143)
33 3rqi_A Response regulator prot 99.8 6.2E-19 2.1E-23 183.6 12.1 119 964-1110 7-125 (184)
34 3ehg_A Sensor kinase (YOCF pro 99.8 1.4E-18 4.7E-23 170.2 13.0 125 512-700 2-126 (128)
35 1dbw_A Transcriptional regulat 99.8 8.5E-18 2.9E-22 162.8 18.4 120 964-1111 3-122 (126)
36 3zxo_A Redox sensor histidine 99.8 2.5E-18 8.6E-23 167.9 14.6 125 510-700 3-128 (129)
37 3gt7_A Sensor protein; structu 99.8 5.9E-18 2E-22 170.5 17.7 122 964-1111 7-128 (154)
38 1mb3_A Cell division response 99.8 5.6E-18 1.9E-22 163.1 16.5 121 965-1111 2-122 (124)
39 2pl1_A Transcriptional regulat 99.8 1.1E-17 3.6E-22 160.4 18.2 118 965-1110 1-118 (121)
40 1srr_A SPO0F, sporulation resp 99.8 8E-18 2.7E-22 162.3 17.3 118 965-1110 4-121 (124)
41 3crn_A Response regulator rece 99.8 8.9E-18 3E-22 164.4 17.2 118 965-1110 4-121 (132)
42 1tmy_A CHEY protein, TMY; chem 99.8 1.1E-17 3.8E-22 160.1 17.2 116 965-1108 3-119 (120)
43 1jbe_A Chemotaxis protein CHEY 99.8 1.4E-17 4.9E-22 161.3 17.2 121 964-1110 4-125 (128)
44 3r0j_A Possible two component 99.8 1.2E-17 3.9E-22 182.7 18.4 119 964-1110 23-141 (250)
45 2a9o_A Response regulator; ess 99.8 2.3E-17 7.8E-22 157.6 17.9 116 966-1110 3-118 (120)
46 1dcf_A ETR1 protein; beta-alph 99.8 1.2E-17 4.1E-22 164.0 16.1 125 963-1111 6-130 (136)
47 3hzh_A Chemotaxis response reg 99.8 1.4E-17 4.9E-22 168.2 17.1 122 963-1110 35-157 (157)
48 1zgz_A Torcad operon transcrip 99.7 2.4E-17 8.1E-22 158.4 17.7 117 965-1110 3-119 (122)
49 3b2n_A Uncharacterized protein 99.7 1.8E-17 6.1E-22 162.4 17.1 121 965-1113 4-126 (133)
50 3lua_A Response regulator rece 99.7 5.6E-18 1.9E-22 167.2 13.4 125 964-1113 4-130 (140)
51 3eod_A Protein HNR; response r 99.7 1.4E-17 4.8E-22 162.0 15.5 121 963-1111 6-127 (130)
52 1xhf_A DYE resistance, aerobic 99.7 2.7E-17 9.2E-22 158.2 17.3 117 965-1110 4-120 (123)
53 3heb_A Response regulator rece 99.7 2.8E-17 9.7E-22 164.7 17.8 130 964-1110 4-135 (152)
54 1i3c_A Response regulator RCP1 99.7 2.4E-17 8.2E-22 165.0 17.1 128 964-1110 8-137 (149)
55 4dad_A Putative pilus assembly 99.7 8.7E-18 3E-22 167.1 13.8 124 963-1112 19-143 (146)
56 1dz3_A Stage 0 sporulation pro 99.7 2.1E-17 7E-22 161.0 16.0 122 965-1113 3-126 (130)
57 3grc_A Sensor protein, kinase; 99.7 1E-17 3.5E-22 165.2 13.9 123 964-1112 6-129 (140)
58 1p6q_A CHEY2; chemotaxis, sign 99.7 1.2E-17 4E-22 162.2 13.9 121 964-1110 6-127 (129)
59 3i42_A Response regulator rece 99.7 1.1E-17 3.9E-22 162.0 13.5 121 964-1111 3-123 (127)
60 2qzj_A Two-component response 99.7 1.9E-17 6.6E-22 163.1 15.3 118 964-1110 4-121 (136)
61 3kto_A Response regulator rece 99.7 9.5E-18 3.3E-22 165.1 12.7 122 964-1113 6-129 (136)
62 3hv2_A Response regulator/HD d 99.7 3.5E-17 1.2E-21 164.4 17.0 119 964-1110 14-133 (153)
63 4e7p_A Response regulator; DNA 99.7 3.5E-17 1.2E-21 163.8 16.8 121 963-1111 19-141 (150)
64 3cfy_A Putative LUXO repressor 99.7 2.8E-17 9.7E-22 162.2 15.8 117 966-1110 6-122 (137)
65 3c3m_A Response regulator rece 99.7 3.6E-17 1.2E-21 161.3 16.5 121 965-1111 4-124 (138)
66 3kht_A Response regulator; PSI 99.7 3.2E-17 1.1E-21 162.6 16.2 122 964-1111 5-129 (144)
67 3hdv_A Response regulator; PSI 99.7 5.6E-17 1.9E-21 159.0 17.8 123 964-1112 7-129 (136)
68 3hdg_A Uncharacterized protein 99.7 2.6E-17 8.9E-22 161.6 15.3 120 964-1111 7-126 (137)
69 3f6c_A Positive transcription 99.7 1.8E-17 6.2E-22 161.9 14.0 120 965-1112 2-122 (134)
70 1mvo_A PHOP response regulator 99.7 5.2E-17 1.8E-21 159.1 17.0 120 965-1112 4-123 (136)
71 3zxq_A Hypoxia sensor histidin 99.7 3.4E-17 1.2E-21 158.8 15.1 122 513-700 2-123 (124)
72 3ilh_A Two component response 99.7 5.8E-17 2E-21 160.4 17.1 130 964-1112 9-141 (146)
73 1k68_A Phytochrome response re 99.7 5.6E-17 1.9E-21 158.9 16.8 129 964-1111 2-132 (140)
74 3nhm_A Response regulator; pro 99.7 3.1E-17 1.1E-21 160.1 14.7 121 964-1112 4-124 (133)
75 1zh2_A KDP operon transcriptio 99.7 5E-17 1.7E-21 155.5 15.8 117 965-1110 2-118 (121)
76 3dzd_A Transcriptional regulat 99.7 1.2E-17 4.1E-22 193.4 13.6 117 966-1110 2-118 (368)
77 3cnb_A DNA-binding response re 99.7 1.1E-16 3.8E-21 157.8 18.4 124 964-1113 8-133 (143)
78 3jte_A Response regulator rece 99.7 9E-17 3.1E-21 159.0 17.8 121 964-1110 3-123 (143)
79 3eul_A Possible nitrate/nitrit 99.7 9.6E-17 3.3E-21 160.8 18.2 121 963-1111 14-136 (152)
80 3snk_A Response regulator CHEY 99.7 5.1E-18 1.7E-22 166.6 8.4 119 964-1110 14-133 (135)
81 3h5i_A Response regulator/sens 99.7 2.2E-17 7.6E-22 163.3 12.7 119 964-1110 5-124 (140)
82 2zay_A Response regulator rece 99.7 5.7E-17 1.9E-21 161.2 15.6 122 964-1111 8-129 (147)
83 2jba_A Phosphate regulon trans 99.7 2.3E-17 7.9E-22 159.4 12.0 122 965-1112 3-124 (127)
84 3lte_A Response regulator; str 99.7 1.1E-16 3.8E-21 155.8 16.8 121 964-1111 6-126 (132)
85 1k66_A Phytochrome response re 99.7 9.6E-17 3.3E-21 159.2 16.4 130 964-1111 6-139 (149)
86 3q9s_A DNA-binding response re 99.7 6.7E-17 2.3E-21 176.9 16.0 119 964-1111 37-155 (249)
87 3a10_A Response regulator; pho 99.7 6.1E-17 2.1E-21 154.0 13.4 113 966-1108 3-115 (116)
88 1a04_A Nitrate/nitrite respons 99.7 1.5E-16 5E-21 169.4 17.5 120 964-1111 5-126 (215)
89 1yio_A Response regulatory pro 99.7 6.5E-17 2.2E-21 171.0 14.3 119 964-1110 4-122 (208)
90 3kcn_A Adenylate cyclase homol 99.7 2.1E-16 7.1E-21 158.3 16.8 119 964-1110 4-123 (151)
91 2qxy_A Response regulator; reg 99.7 1.5E-16 5E-21 157.2 15.1 121 964-1113 4-124 (142)
92 3n53_A Response regulator rece 99.7 7.5E-17 2.6E-21 159.1 12.7 120 964-1110 3-122 (140)
93 3cg0_A Response regulator rece 99.7 3.2E-16 1.1E-20 154.0 17.2 118 964-1110 9-128 (140)
94 1s8n_A Putative antiterminator 99.7 1.6E-16 5.4E-21 167.9 15.2 117 965-1110 14-131 (205)
95 1kgs_A DRRD, DNA binding respo 99.7 1.9E-16 6.4E-21 169.5 15.7 119 965-1111 3-121 (225)
96 2rjn_A Response regulator rece 99.7 3.3E-16 1.1E-20 157.3 16.5 119 963-1109 6-125 (154)
97 3eq2_A Probable two-component 99.7 5.8E-17 2E-21 189.4 12.6 119 964-1110 5-124 (394)
98 1w25_A Stalked-cell differenti 99.7 2.1E-16 7.3E-21 188.2 17.7 119 965-1109 2-120 (459)
99 3cg4_A Response regulator rece 99.7 1.1E-16 3.6E-21 158.1 12.5 121 964-1110 7-127 (142)
100 2qr3_A Two-component system re 99.7 4.4E-16 1.5E-20 153.0 16.4 121 964-1112 3-128 (140)
101 3cu5_A Two component transcrip 99.7 1E-16 3.5E-21 159.0 11.5 118 965-1110 3-123 (141)
102 2jk1_A HUPR, hydrogenase trans 99.7 4.8E-16 1.7E-20 153.2 15.6 117 965-1110 2-119 (139)
103 3cz5_A Two-component response 99.7 5.6E-16 1.9E-20 155.4 16.3 120 964-1111 5-126 (153)
104 1qkk_A DCTD, C4-dicarboxylate 99.7 3.8E-16 1.3E-20 157.0 15.1 119 964-1110 3-121 (155)
105 3c97_A Signal transduction his 99.7 1.9E-16 6.4E-21 156.4 12.5 122 964-1111 10-131 (140)
106 2gkg_A Response regulator homo 99.7 5.8E-16 2E-20 149.0 15.6 120 965-1111 6-126 (127)
107 1ny5_A Transcriptional regulat 99.7 3.3E-16 1.1E-20 182.6 16.3 117 965-1109 1-117 (387)
108 2qvg_A Two component response 99.7 6.9E-16 2.4E-20 152.4 16.1 127 964-1110 7-135 (143)
109 1ys7_A Transcriptional regulat 99.7 2.2E-16 7.6E-21 169.8 13.5 119 964-1110 7-125 (233)
110 2pln_A HP1043, response regula 99.7 1.4E-15 4.6E-20 149.5 16.9 118 962-1111 16-134 (137)
111 3eqz_A Response regulator; str 99.7 2.6E-16 9E-21 153.5 11.6 121 964-1113 3-128 (135)
112 2gwr_A DNA-binding response re 99.7 5.5E-16 1.9E-20 167.9 14.9 118 965-1111 6-123 (238)
113 2oqr_A Sensory transduction pr 99.7 5.9E-16 2E-20 166.3 14.6 118 965-1111 5-122 (230)
114 3kyj_B CHEY6 protein, putative 99.7 2.8E-16 9.7E-21 156.1 11.1 110 963-1100 12-125 (145)
115 3t8y_A CHEB, chemotaxis respon 99.6 2E-15 6.7E-20 153.9 16.6 120 964-1112 25-157 (164)
116 2rdm_A Response regulator rece 99.6 2.2E-15 7.6E-20 146.4 16.0 122 964-1114 5-127 (132)
117 3bre_A Probable two-component 99.6 6.5E-16 2.2E-20 177.6 14.3 118 965-1108 19-137 (358)
118 2qv0_A Protein MRKE; structura 99.6 2.3E-15 7.8E-20 148.8 16.1 117 964-1110 9-127 (143)
119 2j48_A Two-component sensor ki 99.6 1.4E-15 4.7E-20 143.9 13.6 116 965-1109 2-117 (119)
120 2zbk_B Type 2 DNA topoisomeras 99.6 4.6E-16 1.6E-20 186.2 11.9 117 548-701 24-148 (530)
121 1mu5_A Type II DNA topoisomera 99.6 7.2E-16 2.5E-20 182.6 13.1 117 548-701 26-149 (471)
122 2qsj_A DNA-binding response re 99.6 1.1E-15 3.6E-20 153.4 12.4 121 964-1111 3-125 (154)
123 1p2f_A Response regulator; DRR 99.6 1.4E-15 4.8E-20 162.3 13.7 116 965-1111 3-118 (220)
124 3klo_A Transcriptional regulat 99.6 2.7E-16 9.2E-21 168.9 7.8 120 964-1111 7-130 (225)
125 3c3w_A Two component transcrip 99.6 3.2E-16 1.1E-20 168.6 7.6 118 965-1110 2-121 (225)
126 2b4a_A BH3024; flavodoxin-like 99.6 1.1E-15 3.8E-20 150.3 10.7 119 962-1111 13-132 (138)
127 3sy8_A ROCR; TIM barrel phosph 99.6 1.1E-15 3.8E-20 179.1 12.4 120 965-1111 4-129 (400)
128 1qo0_D AMIR; binding protein, 99.6 1.6E-15 5.4E-20 159.1 9.7 115 962-1109 10-124 (196)
129 1th8_A Anti-sigma F factor; SP 99.6 3.5E-15 1.2E-19 149.0 11.6 103 550-702 35-141 (145)
130 1dc7_A NTRC, nitrogen regulati 99.6 1.2E-16 4.1E-21 153.3 -0.1 119 965-1111 4-122 (124)
131 2hqr_A Putative transcriptiona 99.6 1E-14 3.5E-19 156.0 14.4 115 965-1111 1-116 (223)
132 3luf_A Two-component system re 99.6 5.2E-15 1.8E-19 163.0 9.8 103 965-1098 5-108 (259)
133 1a2o_A CHEB methylesterase; ba 99.5 5.5E-14 1.9E-18 161.3 16.3 117 965-1110 4-133 (349)
134 1w25_A Stalked-cell differenti 99.5 6.8E-12 2.3E-16 149.2 33.5 267 717-1109 3-269 (459)
135 2vyc_A Biodegradative arginine 99.5 1.6E-14 5.6E-19 181.7 10.1 119 965-1110 1-133 (755)
136 2q2e_B Type 2 DNA topoisomeras 99.3 1.3E-12 4.5E-17 158.4 10.1 114 548-700 31-154 (621)
137 3cwo_X Beta/alpha-barrel prote 98.9 7.6E-10 2.6E-14 118.6 6.0 93 989-1109 6-100 (237)
138 1kij_A DNA gyrase subunit B; t 98.3 3.1E-07 1.1E-11 106.4 5.7 86 549-678 31-128 (390)
139 1b63_A MUTL; DNA mismatch repa 98.2 2.9E-06 9.8E-11 96.4 10.9 89 554-689 24-118 (333)
140 4dah_A Sporulation kinase D; a 98.2 8.1E-06 2.8E-10 86.3 12.0 74 214-292 106-180 (217)
141 1h7s_A PMS1 protein homolog 2; 98.1 5.6E-06 1.9E-10 95.0 9.6 88 554-688 34-127 (365)
142 3na3_A DNA mismatch repair pro 98.0 1.1E-05 3.9E-10 91.4 10.5 88 554-688 28-121 (348)
143 3ke6_A Protein RV1364C/MT1410; 98.0 6E-06 2E-10 96.3 7.4 90 551-701 294-387 (399)
144 3zcc_A HAMP, osmolarity sensor 98.0 1.5E-05 5E-10 74.5 8.7 58 434-497 56-113 (114)
145 3lif_A Putative diguanylate cy 97.8 4.1E-05 1.4E-09 82.8 10.2 75 215-292 109-184 (254)
146 3lib_A Hypothetical sensory tr 97.8 2.2E-05 7.4E-10 86.7 7.9 74 214-292 132-205 (290)
147 3li9_A Hypothetical sensory tr 97.8 2.4E-05 8.2E-10 86.4 6.9 74 214-292 133-206 (291)
148 3lic_A Sensor protein; PDC fol 97.8 8.8E-05 3E-09 80.8 11.0 72 213-292 125-198 (274)
149 3h4l_A DNA mismatch repair pro 97.6 4.3E-05 1.5E-09 87.4 6.5 88 554-688 25-118 (367)
150 1ixm_A SPO0B, protein (sporula 97.6 0.00026 8.7E-09 73.8 11.7 140 440-650 23-170 (192)
151 3cwo_X Beta/alpha-barrel prote 97.5 0.00054 1.9E-08 72.6 12.8 71 1031-1105 144-221 (237)
152 3e4o_A C4-dicarboxylate transp 97.4 0.00033 1.1E-08 78.5 10.1 62 224-293 162-223 (305)
153 3c8c_A Methyl-accepting chemot 97.3 6.7E-05 2.3E-09 79.4 2.3 74 215-291 101-176 (240)
154 3by9_A Sensor protein; histidi 97.3 0.0008 2.7E-08 72.4 10.6 70 214-292 112-181 (260)
155 3lid_A Putative sensory BOX/gg 97.2 0.00092 3.2E-08 74.4 10.7 60 229-293 148-207 (295)
156 3zrx_A AF1503 protein, osmolar 97.2 0.00067 2.3E-08 62.9 7.4 57 437-499 59-115 (115)
157 2wer_A ATP-dependent molecular 97.1 0.00027 9.1E-09 75.4 4.7 57 627-687 74-140 (220)
158 2ayx_A Sensor kinase protein R 96.9 0.0012 4.1E-08 71.7 7.6 99 961-1110 8-106 (254)
159 1yc1_A HSP 86, heat shock prot 96.6 0.0022 7.5E-08 70.0 6.8 57 627-687 116-182 (264)
160 1s16_A Topoisomerase IV subuni 96.6 0.003 1E-07 72.9 8.0 80 552-675 33-124 (390)
161 1qy5_A Endoplasmin; GRP94, NEC 96.6 0.00049 1.7E-08 75.3 1.2 57 627-687 76-147 (269)
162 2ior_A Chaperone protein HTPG; 96.4 0.00074 2.5E-08 72.7 1.5 57 627-687 95-163 (235)
163 3n75_A LDC, lysine decarboxyla 95.7 0.0075 2.6E-07 74.9 5.8 99 978-1106 20-119 (715)
164 2gqp_A Endoplasmin; GRP94, HSP 95.0 0.0075 2.6E-07 64.8 1.9 58 627-688 80-152 (236)
165 1ei1_A DNA gyrase B, GYRB; ATP 94.6 0.046 1.6E-06 63.0 7.4 50 627-676 67-128 (391)
166 2yxb_A Coenzyme B12-dependent 94.4 0.65 2.2E-05 46.5 14.6 119 964-1110 18-145 (161)
167 3to5_A CHEY homolog; alpha(5)b 94.2 0.49 1.7E-05 45.9 12.8 119 715-869 12-131 (134)
168 3q7r_A Transcriptional regulat 93.7 0.69 2.4E-05 41.8 11.2 107 964-1111 12-119 (121)
169 1y4s_A Chaperone protein HTPG; 93.6 0.14 4.9E-06 61.4 9.2 48 627-674 75-134 (559)
170 3fv5_A DNA topoisomerase 4 sub 93.0 0.18 6E-06 52.7 7.6 49 627-675 50-110 (201)
171 3peh_A Endoplasmin homolog; st 92.9 0.12 4.2E-06 56.4 6.5 57 627-687 94-161 (281)
172 2cg9_A ATP-dependent molecular 92.7 0.18 6.2E-06 61.6 8.3 22 627-648 74-95 (677)
173 3r0j_A Possible two component 92.7 1.2 4.2E-05 47.2 14.1 141 690-871 1-141 (250)
174 3cwv_A DNA gyrase, B subunit, 91.7 0.26 8.9E-06 56.3 7.5 78 551-675 27-110 (369)
175 1wv2_A Thiazole moeity, thiazo 91.6 1.1 3.6E-05 48.2 11.5 96 980-1106 127-234 (265)
176 2ioq_A Chaperone protein HTPG; 91.6 0.15 5.3E-06 61.9 5.8 48 627-674 75-134 (624)
177 3o0i_A HSP90AA1 protein; HSP90 91.6 0.069 2.4E-06 57.6 2.4 57 627-688 108-175 (256)
178 3t0h_A Heat shock protein HSP 91.5 0.13 4.5E-06 54.7 4.5 59 627-689 80-148 (228)
179 2o1u_A Endoplasmin; GRP94, HSP 91.4 0.14 4.7E-06 62.6 5.0 22 627-648 93-114 (666)
180 3hzh_A Chemotaxis response reg 90.2 2.8 9.7E-05 40.6 12.7 119 715-869 36-155 (157)
181 3m6m_D Sensory/regulatory prot 89.5 4.4 0.00015 38.6 13.2 121 715-869 14-134 (143)
182 3nmq_A Heat shock protein HSP 89.1 0.28 9.6E-06 52.4 4.4 56 627-687 87-153 (239)
183 1ccw_A Protein (glutamate muta 87.5 5.6 0.00019 38.5 12.3 110 971-1108 14-134 (137)
184 4emv_A DNA topoisomerase IV, B 87.0 1 3.6E-05 47.7 7.2 66 627-697 73-149 (226)
185 4duh_A DNA gyrase subunit B; s 86.6 1.4 4.6E-05 46.6 7.8 65 628-697 69-145 (220)
186 3ilh_A Two component response 84.6 15 0.0005 34.4 13.7 127 716-871 10-139 (146)
187 1zxm_A TOPO IIA ATPase, DNA to 84.4 1.9 6.5E-05 49.6 8.3 49 627-675 87-147 (400)
188 3gl9_A Response regulator; bet 84.4 10 0.00034 34.8 12.1 117 717-869 4-120 (122)
189 2htm_A Thiazole biosynthesis p 84.1 4.6 0.00016 43.4 10.4 97 980-1106 116-225 (268)
190 3q58_A N-acetylmannosamine-6-p 83.6 5.9 0.0002 41.9 11.2 85 977-1092 118-209 (229)
191 3hdv_A Response regulator; PSI 83.3 17 0.00057 33.6 13.4 120 716-871 8-127 (136)
192 3t6k_A Response regulator rece 83.1 18 0.00063 33.6 13.6 120 716-871 5-124 (136)
193 1dcf_A ETR1 protein; beta-alph 82.8 13 0.00044 34.5 12.4 120 714-870 6-128 (136)
194 3f6p_A Transcriptional regulat 82.4 14 0.00049 33.5 12.3 115 717-870 4-118 (120)
195 3eod_A Protein HNR; response r 81.9 13 0.00044 34.2 11.8 120 714-871 6-126 (130)
196 3ied_A Heat shock protein; HSP 81.8 0.73 2.5E-05 49.4 3.2 56 627-686 131-197 (272)
197 3hv2_A Response regulator/HD d 81.1 21 0.0007 34.0 13.4 119 715-871 14-133 (153)
198 3ttz_A DNA gyrase subunit B; p 80.8 2.5 8.6E-05 43.8 6.8 14 627-640 64-77 (198)
199 3mm4_A Histidine kinase homolo 80.6 18 0.00061 36.9 13.4 175 673-870 15-195 (206)
200 3f6c_A Positive transcription 80.0 24 0.00081 32.4 13.1 117 717-871 3-120 (134)
201 3lte_A Response regulator; str 79.8 25 0.00085 32.2 13.1 118 716-871 7-125 (132)
202 3grc_A Sensor protein, kinase; 79.6 12 0.00041 34.9 10.9 121 716-872 7-128 (140)
203 3gt7_A Sensor protein; structu 79.0 19 0.00065 34.4 12.3 120 716-871 8-127 (154)
204 1pvg_A DNA topoisomerase II; G 78.9 2.9 9.8E-05 48.4 7.1 67 627-697 99-178 (418)
205 3igs_A N-acetylmannosamine-6-p 78.9 11 0.00036 40.0 11.1 85 977-1092 118-209 (232)
206 1srr_A SPO0F, sporulation resp 78.0 29 0.001 31.3 12.9 116 717-870 5-120 (124)
207 1dbw_A Transcriptional regulat 77.4 38 0.0013 30.7 13.5 117 716-870 4-120 (126)
208 3h5i_A Response regulator/sens 77.1 26 0.0009 32.6 12.5 118 716-871 6-124 (140)
209 3hdg_A Uncharacterized protein 76.6 20 0.00067 33.2 11.4 117 717-871 9-125 (137)
210 3h1g_A Chemotaxis protein CHEY 76.5 26 0.00089 32.1 12.1 120 716-870 6-126 (129)
211 3jte_A Response regulator rece 75.6 39 0.0013 31.3 13.3 119 717-871 5-123 (143)
212 1mb3_A Cell division response 75.6 36 0.0012 30.5 12.7 118 717-870 3-120 (124)
213 1tmy_A CHEY protein, TMY; chem 75.3 42 0.0014 29.9 13.0 114 717-868 4-118 (120)
214 3lnu_A Topoisomerase IV subuni 75.2 3.7 0.00013 47.2 6.6 49 628-676 84-144 (408)
215 3cg4_A Response regulator rece 75.2 37 0.0013 31.4 13.0 120 715-870 7-126 (142)
216 3cg0_A Response regulator rece 75.1 40 0.0014 30.9 13.2 118 715-871 9-128 (140)
217 3i42_A Response regulator rece 74.9 28 0.00095 31.6 11.8 117 716-869 4-120 (127)
218 2gkg_A Response regulator homo 74.3 38 0.0013 30.3 12.5 117 717-870 7-124 (127)
219 2zay_A Response regulator rece 74.3 36 0.0012 31.8 12.7 120 716-871 9-128 (147)
220 3crn_A Response regulator rece 73.6 45 0.0015 30.5 13.0 116 717-870 5-120 (132)
221 3eul_A Possible nitrate/nitrit 73.3 52 0.0018 30.9 13.7 119 715-871 15-135 (152)
222 3cnb_A DNA-binding response re 72.9 50 0.0017 30.3 13.3 120 716-871 9-130 (143)
223 1zgz_A Torcad operon transcrip 72.9 52 0.0018 29.4 13.6 115 717-870 4-118 (122)
224 1k68_A Phytochrome response re 72.8 40 0.0014 30.8 12.5 126 716-870 3-130 (140)
225 2r25_B Osmosensing histidine p 72.7 35 0.0012 31.5 12.0 122 717-870 4-126 (133)
226 3snk_A Response regulator CHEY 72.5 29 0.00098 32.0 11.4 117 716-870 15-132 (135)
227 3lua_A Response regulator rece 72.5 16 0.00055 34.0 9.6 120 716-871 5-127 (140)
228 4e7p_A Response regulator; DNA 72.3 39 0.0013 31.8 12.5 118 716-871 21-140 (150)
229 3b2n_A Uncharacterized protein 71.9 53 0.0018 30.1 13.1 116 717-870 5-122 (133)
230 2rjn_A Response regulator rece 71.2 42 0.0014 31.6 12.5 119 715-871 7-126 (154)
231 3rqi_A Response regulator prot 71.1 17 0.00058 36.1 9.9 117 715-869 7-123 (184)
232 1xhf_A DYE resistance, aerobic 71.0 58 0.002 29.1 13.2 115 717-870 5-119 (123)
233 2qr3_A Two-component system re 70.9 45 0.0015 30.6 12.4 118 716-871 4-126 (140)
234 3nhm_A Response regulator; pro 70.8 38 0.0013 30.9 11.7 117 717-871 6-122 (133)
235 2qzj_A Two-component response 70.7 50 0.0017 30.5 12.7 115 717-870 6-120 (136)
236 3n0r_A Response regulator; sig 70.6 19 0.00066 39.0 10.9 115 716-871 161-277 (286)
237 2j48_A Two-component sensor ki 70.5 25 0.00087 30.9 10.1 113 717-868 3-115 (119)
238 3cfy_A Putative LUXO repressor 70.0 53 0.0018 30.4 12.7 116 717-870 6-121 (137)
239 3c3m_A Response regulator rece 69.9 62 0.0021 29.8 13.2 119 717-871 5-123 (138)
240 3dzd_A Transcriptional regulat 69.8 30 0.001 39.0 12.7 117 717-871 2-118 (368)
241 3kto_A Response regulator rece 69.7 36 0.0012 31.4 11.4 118 716-871 7-126 (136)
242 3kht_A Response regulator; PSI 69.7 36 0.0012 31.7 11.5 121 715-871 5-128 (144)
243 3heb_A Response regulator rece 69.6 65 0.0022 30.2 13.5 128 716-870 5-134 (152)
244 1mvo_A PHOP response regulator 69.4 67 0.0023 29.2 13.6 116 717-870 5-120 (136)
245 3a10_A Response regulator; pho 69.3 50 0.0017 29.2 11.9 112 717-868 3-114 (116)
246 3kcn_A Adenylate cyclase homol 68.7 50 0.0017 31.1 12.4 118 716-871 5-123 (151)
247 2a9o_A Response regulator; ess 67.6 66 0.0022 28.4 12.7 114 718-870 4-117 (120)
248 2pl1_A Transcriptional regulat 67.5 67 0.0023 28.5 13.0 115 718-870 3-117 (121)
249 1jbe_A Chemotaxis protein CHEY 67.3 60 0.002 29.2 12.2 118 717-870 6-124 (128)
250 4dad_A Putative pilus assembly 67.1 31 0.0011 32.3 10.4 121 714-871 19-141 (146)
251 3qja_A IGPS, indole-3-glycerol 66.2 63 0.0022 34.9 13.7 84 980-1092 154-241 (272)
252 2lpm_A Two-component response 65.8 6.9 0.00023 37.1 5.2 110 715-867 8-118 (123)
253 3cz5_A Two-component response 65.8 62 0.0021 30.4 12.4 118 716-871 6-125 (153)
254 1k66_A Phytochrome response re 65.8 77 0.0026 29.2 13.0 129 716-870 7-137 (149)
255 3ffs_A Inosine-5-monophosphate 65.7 55 0.0019 37.4 13.6 102 964-1092 156-274 (400)
256 2i2x_B MTAC, methyltransferase 65.4 61 0.0021 34.6 13.3 113 964-1110 123-244 (258)
257 2qxy_A Response regulator; reg 65.2 54 0.0018 30.3 11.6 117 716-871 5-121 (142)
258 1req_A Methylmalonyl-COA mutas 65.0 51 0.0018 40.6 13.8 118 964-1109 596-722 (727)
259 1p6q_A CHEY2; chemotaxis, sign 63.8 55 0.0019 29.5 11.2 118 717-870 8-126 (129)
260 1yio_A Response regulatory pro 62.8 49 0.0017 33.1 11.6 117 716-870 5-121 (208)
261 1y80_A Predicted cobalamin bin 62.3 44 0.0015 34.3 11.2 111 965-1107 89-208 (210)
262 1qkk_A DCTD, C4-dicarboxylate 62.3 42 0.0014 31.7 10.4 118 716-871 4-121 (155)
263 2gwr_A DNA-binding response re 61.9 70 0.0024 32.9 12.8 116 717-871 7-122 (238)
264 3kp1_A D-ornithine aminomutase 61.6 37 0.0013 40.8 11.2 117 964-1110 602-735 (763)
265 1ys7_A Transcriptional regulat 61.5 65 0.0022 32.7 12.5 118 716-871 8-125 (233)
266 4fo4_A Inosine 5'-monophosphat 61.4 1.1E+02 0.0036 34.6 14.8 101 964-1092 120-239 (366)
267 1zh2_A KDP operon transcriptio 60.7 89 0.003 27.6 12.4 114 718-870 4-117 (121)
268 3f4w_A Putative hexulose 6 pho 60.7 1.1E+02 0.0039 30.9 14.0 114 964-1109 77-208 (211)
269 3c97_A Signal transduction his 59.9 56 0.0019 30.2 10.7 117 717-871 12-130 (140)
270 1kgs_A DRRD, DNA binding respo 59.9 71 0.0024 32.2 12.3 117 717-871 4-120 (225)
271 3q9s_A DNA-binding response re 59.7 61 0.0021 33.9 12.0 117 716-871 38-154 (249)
272 2jk1_A HUPR, hydrogenase trans 59.3 1.1E+02 0.0037 28.1 13.3 75 793-870 44-118 (139)
273 1dz3_A Stage 0 sporulation pro 58.5 1.1E+02 0.0036 27.7 13.0 117 717-870 4-122 (130)
274 3o63_A Probable thiamine-phosp 58.2 56 0.0019 34.7 11.2 88 993-1109 141-240 (243)
275 2xij_A Methylmalonyl-COA mutas 57.8 66 0.0023 39.8 13.0 118 964-1109 604-730 (762)
276 1s8n_A Putative antiterminator 57.7 76 0.0026 31.6 11.9 116 716-870 14-130 (205)
277 3ezx_A MMCP 1, monomethylamine 57.6 33 0.0011 35.7 9.2 100 964-1092 92-202 (215)
278 1xrs_B D-lysine 5,6-aminomutas 57.2 80 0.0027 33.9 12.2 116 964-1108 120-256 (262)
279 3n53_A Response regulator rece 56.1 70 0.0024 29.4 10.6 118 717-871 5-122 (140)
280 1a04_A Nitrate/nitrite respons 55.2 1.2E+02 0.004 30.4 13.0 117 717-871 7-125 (215)
281 3tsm_A IGPS, indole-3-glycerol 54.3 73 0.0025 34.4 11.4 93 979-1100 160-261 (272)
282 2b4a_A BH3024; flavodoxin-like 53.3 73 0.0025 29.2 10.2 115 714-870 14-130 (138)
283 1ny5_A Transcriptional regulat 53.2 98 0.0033 35.0 13.0 115 718-870 3-117 (387)
284 3by8_A Sensor protein DCUS; hi 52.5 18 0.00062 34.8 5.8 38 227-267 101-138 (142)
285 1geq_A Tryptophan synthase alp 51.9 29 0.00098 36.6 7.7 62 1032-1099 32-121 (248)
286 2qsj_A DNA-binding response re 51.6 84 0.0029 29.4 10.5 118 717-871 5-124 (154)
287 1xi3_A Thiamine phosphate pyro 51.1 63 0.0022 32.8 10.1 55 1031-1092 128-189 (215)
288 1xm3_A Thiazole biosynthesis p 51.1 23 0.00079 38.1 6.9 42 1046-1093 166-207 (264)
289 2ekc_A AQ_1548, tryptophan syn 49.1 56 0.0019 35.0 9.5 73 1031-1108 44-144 (262)
290 1i3c_A Response regulator RCP1 49.0 1.6E+02 0.0056 27.3 12.1 126 716-870 9-136 (149)
291 1yad_A Regulatory protein TENI 48.1 61 0.0021 33.4 9.4 55 1031-1092 130-191 (221)
292 1qo0_D AMIR; binding protein, 46.7 95 0.0032 30.6 10.4 113 715-870 12-124 (196)
293 3rht_A (gatase1)-like protein; 46.3 11 0.00038 40.6 3.3 78 965-1072 5-87 (259)
294 2jba_A Phosphate regulon trans 46.3 1.4E+02 0.0048 26.5 10.8 118 717-870 4-121 (127)
295 3usb_A Inosine-5'-monophosphat 46.3 2.1E+02 0.0071 33.7 14.7 102 964-1092 268-387 (511)
296 2qvg_A Two component response 46.0 1.7E+02 0.006 26.6 12.8 123 717-869 9-133 (143)
297 3eq2_A Probable two-component 45.8 85 0.0029 35.2 11.0 116 716-869 6-122 (394)
298 4avf_A Inosine-5'-monophosphat 45.6 1.7E+02 0.0058 34.2 13.7 101 964-1092 241-360 (490)
299 3khj_A Inosine-5-monophosphate 45.5 1.1E+02 0.0038 34.4 11.6 102 964-1092 117-235 (361)
300 3cu5_A Two component transcrip 44.9 1.4E+02 0.0049 27.5 10.8 74 793-870 49-122 (141)
301 4adt_A Pyridoxine biosynthetic 44.0 1.7E+02 0.0057 32.0 12.3 58 1047-1110 196-260 (297)
302 1ka9_F Imidazole glycerol phos 44.0 1.4E+02 0.0049 31.0 11.8 53 1047-1105 185-243 (252)
303 2oqr_A Sensory transduction pr 43.8 91 0.0031 31.6 10.0 116 717-871 6-121 (230)
304 1geq_A Tryptophan synthase alp 43.2 1.1E+02 0.0038 31.9 10.7 96 966-1093 110-220 (248)
305 1p2f_A Response regulator; DRR 42.6 1.7E+02 0.0056 29.4 11.7 114 717-871 4-117 (220)
306 3t8y_A CHEB, chemotaxis respon 42.0 2.3E+02 0.0079 26.8 13.0 116 716-869 26-153 (164)
307 3r2g_A Inosine 5'-monophosphat 41.9 3.1E+02 0.011 30.7 14.5 97 964-1092 112-227 (361)
308 2gjl_A Hypothetical protein PA 41.9 1.8E+02 0.006 31.9 12.5 81 982-1092 112-200 (328)
309 3eqz_A Response regulator; str 41.8 1.6E+02 0.0055 26.3 10.5 116 717-871 5-125 (135)
310 2w6r_A Imidazole glycerol phos 41.0 93 0.0032 32.9 9.8 51 1047-1103 189-245 (266)
311 1x1o_A Nicotinate-nucleotide p 40.9 1E+02 0.0035 33.5 10.0 93 966-1092 168-267 (286)
312 3l4e_A Uncharacterized peptida 40.9 1E+02 0.0034 31.8 9.5 80 964-1072 27-121 (206)
313 2qv0_A Protein MRKE; structura 40.6 2.1E+02 0.0072 26.0 12.9 116 716-871 10-127 (143)
314 4gfh_A DNA topoisomerase 2; to 37.6 55 0.0019 42.7 8.3 49 628-676 95-155 (1177)
315 4fxs_A Inosine-5'-monophosphat 37.0 3.4E+02 0.012 31.7 14.5 101 964-1092 243-362 (496)
316 1jcn_A Inosine monophosphate d 36.7 2.3E+02 0.0077 33.3 13.0 87 976-1092 283-386 (514)
317 3bo9_A Putative nitroalkan dio 36.6 1.7E+02 0.0057 32.2 11.2 81 982-1092 118-204 (326)
318 3kyj_B CHEY6 protein, putative 36.4 1.6E+02 0.0055 27.0 9.7 109 715-860 13-124 (145)
319 1thf_D HISF protein; thermophI 36.3 1.2E+02 0.0041 31.7 9.6 69 1031-1105 164-242 (253)
320 1eep_A Inosine 5'-monophosphat 36.2 2.2E+02 0.0075 32.2 12.5 91 975-1092 180-284 (404)
321 2v82_A 2-dehydro-3-deoxy-6-pho 35.5 54 0.0019 33.5 6.5 79 982-1092 95-175 (212)
322 1y0e_A Putative N-acetylmannos 34.9 1.5E+02 0.005 30.3 9.9 41 1046-1092 163-203 (223)
323 3nav_A Tryptophan synthase alp 34.9 39 0.0013 36.5 5.4 55 1045-1104 83-143 (271)
324 3qz6_A HPCH/HPAI aldolase; str 34.2 3.4E+02 0.012 28.8 12.8 73 1031-1107 37-110 (261)
325 3klo_A Transcriptional regulat 34.2 1.3E+02 0.0045 30.4 9.4 119 716-871 8-129 (225)
326 1h5y_A HISF; histidine biosynt 33.9 1.3E+02 0.0045 31.0 9.5 70 1031-1106 167-246 (253)
327 4dzz_A Plasmid partitioning pr 33.7 94 0.0032 30.9 8.0 66 963-1054 29-96 (206)
328 2c6q_A GMP reductase 2; TIM ba 33.7 4.2E+02 0.014 29.4 14.0 103 965-1095 133-255 (351)
329 1ka9_F Imidazole glycerol phos 33.5 1.6E+02 0.0054 30.7 10.0 53 1034-1092 48-103 (252)
330 2rdm_A Response regulator rece 33.5 2.6E+02 0.0088 24.9 14.0 118 715-871 5-123 (132)
331 2tps_A Protein (thiamin phosph 33.1 1.4E+02 0.0048 30.5 9.4 56 1031-1092 136-199 (227)
332 2pln_A HP1043, response regula 33.1 2.7E+02 0.0093 25.0 13.4 115 713-870 16-132 (137)
333 3sy8_A ROCR; TIM barrel phosph 32.4 2.4E+02 0.0083 31.6 12.0 118 716-871 4-128 (400)
334 2yw3_A 4-hydroxy-2-oxoglutarat 32.3 2.3E+02 0.0078 28.9 10.7 97 986-1116 102-206 (207)
335 1gox_A (S)-2-hydroxy-acid oxid 32.0 1.9E+02 0.0066 32.4 10.9 58 1031-1092 246-308 (370)
336 3o07_A Pyridoxine biosynthesis 32.0 93 0.0032 33.7 7.5 59 1046-1110 186-251 (291)
337 1vzw_A Phosphoribosyl isomeras 31.9 1.3E+02 0.0045 31.3 9.0 68 1031-1104 159-239 (244)
338 1x1o_A Nicotinate-nucleotide p 31.7 65 0.0022 35.1 6.5 65 1047-1117 183-247 (286)
339 2p10_A MLL9387 protein; putati 31.7 1E+02 0.0035 33.3 7.9 83 983-1093 158-259 (286)
340 2z6i_A Trans-2-enoyl-ACP reduc 30.6 2.6E+02 0.0089 30.7 11.5 56 1031-1092 130-190 (332)
341 3c3w_A Two component transcrip 29.8 97 0.0033 31.6 7.4 117 717-871 3-121 (225)
342 2lci_A Protein OR36; structura 29.4 1.3E+02 0.0045 26.6 6.7 41 967-1007 80-120 (134)
343 3kts_A Glycerol uptake operon 29.3 86 0.003 32.0 6.5 52 1031-1092 127-178 (192)
344 3vnd_A TSA, tryptophan synthas 28.9 42 0.0015 36.2 4.4 57 1045-1106 81-143 (267)
345 1yxy_A Putative N-acetylmannos 28.7 1.9E+02 0.0065 29.8 9.5 40 1046-1092 175-214 (234)
346 1qop_A Tryptophan synthase alp 28.6 53 0.0018 35.2 5.2 57 1046-1107 81-143 (268)
347 3l0g_A Nicotinate-nucleotide p 28.4 84 0.0029 34.4 6.6 63 1048-1117 196-258 (300)
348 3tqv_A Nicotinate-nucleotide p 28.4 68 0.0023 34.9 5.9 79 1032-1117 169-249 (287)
349 2v5j_A 2,4-dihydroxyhept-2-ENE 27.7 5.8E+02 0.02 27.4 13.4 73 1031-1107 60-133 (287)
350 2oo3_A Protein involved in cat 27.3 38 0.0013 36.8 3.7 70 965-1055 114-184 (283)
351 3bw2_A 2-nitropropane dioxygen 27.1 3.6E+02 0.012 29.9 12.1 78 985-1092 142-236 (369)
352 3ovp_A Ribulose-phosphate 3-ep 27.0 88 0.003 32.7 6.4 84 982-1092 106-196 (228)
353 4a29_A Engineered retro-aldol 27.0 5.9E+02 0.02 27.0 13.4 86 979-1093 144-233 (258)
354 3s83_A Ggdef family protein; s 26.6 1.2E+02 0.004 31.9 7.5 101 979-1106 143-254 (259)
355 2kx7_A Sensor-like histidine k 26.5 64 0.0022 29.9 4.4 95 961-1110 4-99 (117)
356 3fwz_A Inner membrane protein 26.2 4E+02 0.014 24.7 10.6 67 1031-1108 71-137 (140)
357 1p0k_A Isopentenyl-diphosphate 26.1 5.3E+02 0.018 28.3 13.1 44 1044-1092 236-279 (349)
358 2p9j_A Hypothetical protein AQ 26.1 1.7E+02 0.0058 27.8 8.0 67 1031-1104 8-92 (162)
359 1p0z_A Sensor kinase CITA; tra 25.8 27 0.00092 32.9 2.0 31 229-262 98-128 (131)
360 1o4u_A Type II quinolic acid p 25.7 88 0.003 34.0 6.2 57 1047-1109 180-236 (285)
361 1tqx_A D-ribulose-5-phosphate 25.3 1.6E+02 0.0053 30.8 7.9 86 983-1093 109-201 (227)
362 2fli_A Ribulose-phosphate 3-ep 25.2 1.5E+02 0.005 30.2 7.7 74 1031-1106 131-216 (220)
363 2lx0_A Membrane fusion protein 24.5 45 0.0015 22.7 2.2 14 20-33 8-21 (32)
364 1rd5_A Tryptophan synthase alp 24.3 1.4E+02 0.0046 31.7 7.5 81 998-1107 35-139 (262)
365 2w6r_A Imidazole glycerol phos 24.3 1E+02 0.0036 32.5 6.5 55 1032-1092 44-102 (266)
366 3sgz_A Hydroxyacid oxidase 2; 24.0 3.8E+02 0.013 29.8 11.2 58 1031-1092 238-300 (352)
367 2vws_A YFAU, 2-keto-3-deoxy su 23.3 6.8E+02 0.023 26.4 13.7 73 1031-1107 39-112 (267)
368 4e5v_A Putative THUA-like prot 23.1 61 0.0021 35.1 4.4 83 964-1072 4-94 (281)
369 3paj_A Nicotinate-nucleotide p 22.9 96 0.0033 34.3 5.9 64 1047-1117 219-282 (320)
370 3bre_A Probable two-component 22.8 3.5E+02 0.012 29.3 10.8 73 794-868 64-136 (358)
371 2xxa_A Signal recognition part 22.4 1.5E+02 0.0052 34.1 7.8 32 964-995 129-163 (433)
372 2f95_B Sensory rhodopsin II tr 22.3 55 0.0019 31.3 3.5 24 395-418 67-90 (163)
373 1j8m_F SRP54, signal recogniti 22.1 1.4E+02 0.0049 32.3 7.2 32 963-994 125-159 (297)
374 4fxs_A Inosine-5'-monophosphat 21.9 1.9E+02 0.0066 33.8 8.7 56 1031-1092 243-299 (496)
375 3ajx_A 3-hexulose-6-phosphate 21.9 67 0.0023 32.6 4.2 56 1037-1097 29-88 (207)
376 3vk5_A MOEO5; TIM barrel, tran 21.5 1.7E+02 0.0057 31.8 7.2 59 1031-1094 199-257 (286)
377 2nzl_A Hydroxyacid oxidase 1; 21.2 2.5E+02 0.0086 31.8 9.2 47 1045-1095 292-339 (392)
378 3lab_A Putative KDPG (2-keto-3 21.1 5.9E+02 0.02 26.3 11.2 86 991-1105 18-103 (217)
379 2nli_A Lactate oxidase; flavoe 21.0 3.9E+02 0.013 29.8 10.7 58 1031-1092 250-312 (368)
380 4e38_A Keto-hydroxyglutarate-a 20.8 7.2E+02 0.025 25.8 12.0 107 968-1106 18-125 (232)
381 2gek_A Phosphatidylinositol ma 20.8 3.2E+02 0.011 29.9 10.0 108 964-1110 240-349 (406)
382 3sr7_A Isopentenyl-diphosphate 20.8 4.6E+02 0.016 29.3 11.1 42 1046-1092 265-306 (365)
383 2bfw_A GLGA glycogen synthase; 20.8 5.7E+02 0.019 24.6 12.1 106 964-1109 70-179 (200)
384 1tqj_A Ribulose-phosphate 3-ep 20.7 1.2E+02 0.0041 31.6 6.0 70 1031-1107 30-108 (230)
385 2qfm_A Spermine synthase; sper 20.7 3.9E+02 0.013 29.9 10.4 68 965-1053 212-296 (364)
386 3inp_A D-ribulose-phosphate 3- 20.4 2.3E+02 0.0077 30.0 8.0 104 982-1108 128-243 (246)
387 1h5y_A HISF; histidine biosynt 20.3 3.2E+02 0.011 27.9 9.4 56 1031-1092 46-105 (253)
388 3bul_A Methionine synthase; tr 20.2 4.7E+02 0.016 31.3 11.5 101 964-1092 98-210 (579)
389 2y88_A Phosphoribosyl isomeras 20.0 1.4E+02 0.0049 30.9 6.5 66 1031-1102 162-240 (244)
390 1ypf_A GMP reductase; GUAC, pu 20.0 8.7E+02 0.03 26.4 13.2 90 972-1092 132-238 (336)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=1.8e-38 Score=349.32 Aligned_cols=233 Identities=28% Similarity=0.398 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001222 429 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD--QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 506 (1120)
Q Consensus 429 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~--~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~ 506 (1120)
++.++.++.|.+|++++||||||||++|.|++++|.... ...++..+++..|.+++.+|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345566778889999999999999999999999886431 123345678889999999999999999999999999999
Q ss_pred ccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC----cEEEEEeec
Q 001222 507 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG----HIIIRGWCE 582 (1120)
Q Consensus 507 l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G----~v~v~~~~~ 582 (1120)
+..+++++.+++++++..+...+..+++.+.++.....+..+.+|+.+|.|||.|||+||+||++.| .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 9999999999999999999999999999998887645556788999999999999999999999754 355443211
Q ss_pred ccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001222 583 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 662 (1120)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G 662 (1120)
...+.|+|.|+|+|||++.+++||+|||+.+.+.+...+|
T Consensus 171 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G 210 (258)
T 2c2a_A 171 ----------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPG 210 (258)
T ss_dssp ----------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------
T ss_pred ----------------------------------------CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCC
Confidence 1247799999999999999999999999988765556679
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 663 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 663 tGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+||||+|||++|+.|||+|+++|.+|+||+|+|+||...
T Consensus 211 ~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 211 TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred cchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 999999999999999999999999999999999999854
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=3.4e-33 Score=308.28 Aligned_cols=227 Identities=24% Similarity=0.427 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001222 429 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 508 (1120)
Q Consensus 429 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~ 508 (1120)
++.++..+.+.+|++.++|||||||++|.+++++|......+++.++++..|..++.+|..++++++++++++.+...+.
T Consensus 31 ~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 110 (268)
T 4ew8_A 31 AALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALE 110 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccee
Confidence 34455667788999999999999999999999999876667788889999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCC
Q 001222 509 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTS 587 (1120)
Q Consensus 509 ~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~ 587 (1120)
..++++.+++++++..+...+..+++.+.+++++..+ .+.+|+..|.|||.|||.||+||++. |.|.|.+...
T Consensus 111 ~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~----- 184 (268)
T 4ew8_A 111 IEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA----- 184 (268)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-----
T ss_pred eeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-----
Confidence 9999999999999999999999999999999877654 58999999999999999999999986 6677654321
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
...+.|+|.|+|+||+++.++++|++|++. +.+|+||||
T Consensus 185 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------~~~g~GlGL 223 (268)
T 4ew8_A 185 -----------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFVGR------DRGGPGLGL 223 (268)
T ss_dssp -----------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTTCCC------SSCCCTTHH
T ss_pred -----------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHhcC------CCCCCcccH
Confidence 124789999999999999999999999843 235999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
+||+++++.|||+|++.|.+++||+|+|.||+..+
T Consensus 224 ~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 224 ALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred HHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999998654
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.2e-34 Score=309.87 Aligned_cols=217 Identities=22% Similarity=0.316 Sum_probs=134.8
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001222 438 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 517 (1120)
Q Consensus 438 Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~l 517 (1120)
+.+|++.+||||||||++|.++++++......+++..+++..|.+++.++..++++++++++++.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45899999999999999999999988655444444456677788999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-EEEEEeecccCCCCCCCCCCcc
Q 001222 518 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAEFPTD 596 (1120)
Q Consensus 518 i~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~~~~~~~ 596 (1120)
+++++..+...+..+++.+.+++++.. ..+.+|+.+|.|||.|||+||+||++.|. |.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~---------------- 144 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN---------------- 144 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC----------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc----------------
Confidence 999999999999999999999987763 46889999999999999999999997764 544321
Q ss_pred ccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHH
Q 001222 597 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~ 676 (1120)
.+ .|.|.|+|+||+++.++++|+||++.+. ...+|+||||+|||++++.
T Consensus 145 -----------------------~~-----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i~~~i~~~ 193 (222)
T 3jz3_A 145 -----------------------AD-----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKL 193 (222)
T ss_dssp -----------------------SS-----EEEEECSCC-----------------------------CTHHHHHHHHHH
T ss_pred -----------------------cC-----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcccccHHHHHHHHHH
Confidence 01 1789999999999999999999997542 2346999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 677 MGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 677 mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
|||+|+++|.+++||+|+|++|...+
T Consensus 194 ~gG~i~i~s~~~~Gt~v~~~~P~~~~ 219 (222)
T 3jz3_A 194 HGMNVEFGNAEQGGFEAKVSWLEHHH 219 (222)
T ss_dssp TTCEEECCBCTTSSBEEEEECCCC--
T ss_pred cCCEEEEEcCCCCcEEEEEeecCCCC
Confidence 99999999999999999999997643
No 4
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=8.5e-33 Score=323.95 Aligned_cols=220 Identities=15% Similarity=0.180 Sum_probs=185.3
Q ss_pred HHHHHHhHhhhhh-----HHHHHHHHHHHHhcC---CCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhccCCccc
Q 001222 439 SQFLANMSHELRT-----PMAAIIGLLEILKSD---DQLTNEQYSTVC--QIKKSSYALLRLLNRILD-LSKVESGKMEL 507 (1120)
Q Consensus 439 s~Fla~~SHELRT-----PL~~I~g~~elL~~~---~~l~~~~~~~l~--~I~~s~~~L~~LIndiLd-lskiesg~~~l 507 (1120)
.+|+++++||||| ||+.|.|+++++... ....++..+++. .|.+.+.+| +|+++|+ +++. ++...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3588899999999 899999999976532 223455566777 589999999 9999999 7777 777777
Q ss_pred cc----eeccHHHHHHHHHHHHHHHhhcC-----CcEEEEEe--CCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc--
Q 001222 508 EN----TEFDLQKELEELVDMFSVQCSNH-----NVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 574 (1120)
Q Consensus 508 ~~----~~~dL~~li~~v~~~~~~~a~~k-----~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-- 574 (1120)
.. +++++.++++++++.+...+..+ ++.+.+++ .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77 89999999999999999999988 99988754 2233457899999999999999999999998765
Q ss_pred ------EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001222 575 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 648 (1120)
Q Consensus 575 ------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~ 648 (1120)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 253 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~if~~ 292 (394)
T 2e0a_A 253 QPSLTPIEVIVVL----------------------------------------GKEDLTIKISDRGGGVPLRIIDRLFSY 292 (394)
T ss_dssp SSSCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCGGGHHHHTST
T ss_pred cCCCCCEEEEEEe----------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCc
Confidence 7776532 122478999999999999999999999
Q ss_pred cccCCCC------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 649 FEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 649 F~q~~~s------~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
||+.+.. ..+..+|+||||+|||++++.|||+|+++|.+|.||+|+|+||...
T Consensus 293 f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 293 TYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp TCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 9998765 4555679999999999999999999999999999999999999864
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=7e-33 Score=324.65 Aligned_cols=220 Identities=17% Similarity=0.212 Sum_probs=173.6
Q ss_pred HHHHHHhHhhhhh-----HHHHHHHHHHHHhcCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhcc-CCcc
Q 001222 439 SQFLANMSHELRT-----PMAAIIGLLEILKSDDQLTNE----QYSTVC--QIKKSSYALLRLLNRILDLSKVES-GKME 506 (1120)
Q Consensus 439 s~Fla~~SHELRT-----PL~~I~g~~elL~~~~~l~~~----~~~~l~--~I~~s~~~L~~LIndiLdlskies-g~~~ 506 (1120)
.+|+++++||||| ||+.|.|+++++.... .++. ..+++. .|.+.+.+| +|+++|++++.+. +...
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~-~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~ 172 (394)
T 2btz_A 96 LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYG-DDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHP 172 (394)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCC
Confidence 3589999999999 9999999999886432 2322 223565 378889999 9999999999988 6777
Q ss_pred ccc----eeccHHHHHHHHHHHHHHHhhc-----CCcEEEEEe--CCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-
Q 001222 507 LEN----TEFDLQKELEELVDMFSVQCSN-----HNVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH- 574 (1120)
Q Consensus 507 l~~----~~~dL~~li~~v~~~~~~~a~~-----k~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~- 574 (1120)
+.. +++++.++++++++.+...+.. +++.+.+.. .+..+..+.+|+.+|+|||.|||+||+||+++|+
T Consensus 173 ~~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~ 252 (394)
T 2btz_A 173 KHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHE 252 (394)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccc
Confidence 777 8999999999999999999987 999988743 1223457899999999999999999999998765
Q ss_pred -------EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhc
Q 001222 575 -------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 647 (1120)
Q Consensus 575 -------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe 647 (1120)
|.|.+.. +...+.|+|.|+|+|||++.+++||+
T Consensus 253 ~~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~ 292 (394)
T 2btz_A 253 SSLILPPIKVMVAL----------------------------------------GEEDLSIKMSDRGGGVPLRKIERLFS 292 (394)
T ss_dssp TCSCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHHHHTC
T ss_pred cCCCCCCEEEEEEe----------------------------------------CCCEEEEEEEeCCCCCCHHHHHHHhc
Confidence 7776532 12247899999999999999999999
Q ss_pred ccccCCCC-----CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 648 SFEQGDPS-----TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 648 ~F~q~~~s-----~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+||+.+.. ..+..+|+||||+|||.+++.|||+|++.|.+|.||+|+|+||...
T Consensus 293 ~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 293 YMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp TTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred ccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 99998765 4445679999999999999999999999999999999999999864
No 6
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1.8e-32 Score=320.61 Aligned_cols=226 Identities=18% Similarity=0.195 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001222 433 ASNNYKSQFLANMSHELRTPMAAII-GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 511 (1120)
Q Consensus 433 ~~~~~Ks~Fla~~SHELRTPL~~I~-g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~ 511 (1120)
+.++.+.+|+++++||+||||++|. |+.+++. ....+++..+++..|..++.+|..|++++|++++++.+.+.+..++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~-~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~ 194 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRK-HIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTR 194 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSS-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCC
Confidence 4456788999999999999999999 6666543 3334567788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhcC---CcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC---------cEEEEE
Q 001222 512 FDLQKELEELVDMFSVQCSNH---NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG---------HIIIRG 579 (1120)
Q Consensus 512 ~dL~~li~~v~~~~~~~a~~k---~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G---------~v~v~~ 579 (1120)
+++.+++++++..+...+..+ .+.+.+..+.+ ..+.+|+.+|.|||.|||+||+||+.+| .|.|.+
T Consensus 195 ~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~ 272 (388)
T 1gkz_A 195 LSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITI 272 (388)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEE
Confidence 999999999999999999988 23333333332 3578999999999999999999999766 577654
Q ss_pred eecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCC---
Q 001222 580 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST--- 656 (1120)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~--- 656 (1120)
.. +...+.|+|.|+|+|||++.+++||++||+.+...
T Consensus 273 ~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 273 AN----------------------------------------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp EE----------------------------------------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred Ee----------------------------------------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 21 12247899999999999999999999999987532
Q ss_pred -----------------CCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 657 -----------------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 657 -----------------~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|+||...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 374 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHID 374 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSS
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCC
Confidence 223479999999999999999999999999999999999999864
No 7
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=3.4e-32 Score=320.20 Aligned_cols=220 Identities=18% Similarity=0.196 Sum_probs=178.9
Q ss_pred HHHHHhHhhhhh-----HHHHHHHHHHHHhcCCC---CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc----C--
Q 001222 440 QFLANMSHELRT-----PMAAIIGLLEILKSDDQ---LTNEQYSTVCQ--IKKSSYALLRLLNRILDLSKVES----G-- 503 (1120)
Q Consensus 440 ~Fla~~SHELRT-----PL~~I~g~~elL~~~~~---l~~~~~~~l~~--I~~s~~~L~~LIndiLdlskies----g-- 503 (1120)
+++++++||||| ||+.|.|+++++..... ..++..+++.. +.+.+.+| ||+++|++++.|. +
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~ 184 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHR 184 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCc
Confidence 345555599999 99999999997764321 11233456666 77788888 9999999999986 3
Q ss_pred -CccccceeccHHHHHHHHHHHHHHHhhcC-----CcEEEEEe--CCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCc-
Q 001222 504 -KMELENTEFDLQKELEELVDMFSVQCSNH-----NVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH- 574 (1120)
Q Consensus 504 -~~~l~~~~~dL~~li~~v~~~~~~~a~~k-----~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~- 574 (1120)
.+.+..+++++.++++++++.+...+..+ ++.+.+++ .+..+..+.+|+.+|+|||.|||+||+||+++|+
T Consensus 185 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 264 (407)
T 2q8g_A 185 KHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHA 264 (407)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66788889999999999999999999988 99988876 1223457899999999999999999999998654
Q ss_pred -------EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhc
Q 001222 575 -------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 647 (1120)
Q Consensus 575 -------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe 647 (1120)
|.|.+.. +...+.|+|.|+|+|||++.+++||+
T Consensus 265 ~~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~e~~~~if~ 304 (407)
T 2q8g_A 265 NRGVYPPIQVHVTL----------------------------------------GNEDLTVKMSDRGGGVPLRKIDRLFN 304 (407)
T ss_dssp TTCCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHGGGGC
T ss_pred cCCCCCCEEEEEEe----------------------------------------CCCEEEEEEEecCCCCCHHHHHHHhC
Confidence 7776532 12247899999999999999999999
Q ss_pred ccccCCCC------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 648 SFEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 648 ~F~q~~~s------~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+||+.+.. ..+..+|+||||+|||++++.|||+|++.|.+|.||+|+|+||...
T Consensus 305 ~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 305 YMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp TTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred ccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 99998765 2345579999999999999999999999999999999999999864
No 8
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.98 E-value=1.1e-31 Score=317.03 Aligned_cols=220 Identities=18% Similarity=0.224 Sum_probs=168.7
Q ss_pred HHHHHHhHhhhhhHHH-----HHHHHHHHHhcCCC---CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh-ccCCccc
Q 001222 439 SQFLANMSHELRTPMA-----AIIGLLEILKSDDQ---LTNEQYSTVCQIKKS--SYALLRLLNRILDLSKV-ESGKMEL 507 (1120)
Q Consensus 439 s~Fla~~SHELRTPL~-----~I~g~~elL~~~~~---l~~~~~~~l~~I~~s--~~~L~~LIndiLdlski-esg~~~l 507 (1120)
.+|. +++|||||||+ .|.|+++++..... ..++..+++..|..+ +.+| +|+++|.+.+. +.+....
T Consensus 119 ~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCC
Confidence 3565 56699999999 88999997754211 123344566665554 7788 99999766654 3344333
Q ss_pred ----cceeccHHHHHHHHHHHHHHHhhc-----CCcEEEEEeC--CCCCceEEeCHHHHHHHHHHHHHHHhhccCCC---
Q 001222 508 ----ENTEFDLQKELEELVDMFSVQCSN-----HNVETVLDLS--DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--- 573 (1120)
Q Consensus 508 ----~~~~~dL~~li~~v~~~~~~~a~~-----k~i~l~~~i~--~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G--- 573 (1120)
..+++++.++++++++.+...+.. +++.+.+... +..+..+.+|+.+|+|||.|||+||+||+++|
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~ 275 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYED 275 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 338999999999999999999887 8888877432 12345789999999999999999999999865
Q ss_pred ------cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhc
Q 001222 574 ------HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 647 (1120)
Q Consensus 574 ------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe 647 (1120)
.|.|.+.. +...++|+|.|+|+|||++.+++||+
T Consensus 276 ~~~~~~~I~I~~~~----------------------------------------~~~~v~I~V~D~G~GI~~e~l~~iF~ 315 (419)
T 1y8o_A 276 RKEGYPAVKTLVTL----------------------------------------GKEDLSIKISDLGGGVPLRKIDRLFN 315 (419)
T ss_dssp CSSCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHGGGGC
T ss_pred cCCCCCCEEEEEEe----------------------------------------CCCEEEEEEEECCCCCCHHHHHHHhC
Confidence 37766432 12257899999999999999999999
Q ss_pred ccccCCCC------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 648 SFEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 648 ~F~q~~~s------~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|||+.+.. ..+..+|+||||+|||++|+.|||+|+++|.+|.||+|+|+||...
T Consensus 316 ~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 316 YMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp TTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred cccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 99998764 4445679999999999999999999999999999999999999864
No 9
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.98 E-value=2.2e-31 Score=288.91 Aligned_cols=216 Identities=20% Similarity=0.344 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
.+.+.+|++.++|||||||++|.+++++|......+++.++++..|.+++.++..++++++++++.+.+ ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 344678999999999999999999999997655445566788899999999999999999999998765 4568999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEF 593 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~ 593 (1120)
..++++++..+...+..+++.+.++.++ ..+.+|+.+|.|||.|||.||+||++. |.|.|.+...
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~----------- 152 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID----------- 152 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE-----------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe-----------
Confidence 9999999999999999999999888654 368899999999999999999999964 5566654321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001222 594 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 673 (1120)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 673 (1120)
...+.|+|.|+|+||+++.++++|+||++.+ ..+|+||||+||+++
T Consensus 153 -----------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~g~GlGL~i~~~i 198 (244)
T 3d36_A 153 -----------------------------NGRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVKGTGLGMMVVYRI 198 (244)
T ss_dssp -----------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGGCCSCHHHHHHHH
T ss_pred -----------------------------CCEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCCCcchhHHHHHHH
Confidence 1247899999999999999999999999643 246899999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 674 VNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 674 Ve~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
++.|||+|+++|.+++||+|+|.||+...
T Consensus 199 ~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 199 IESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred HHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 99999999999999999999999998653
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=3.6e-31 Score=302.78 Aligned_cols=216 Identities=25% Similarity=0.346 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 435 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 435 ~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
.+.+.+|++.++|||||||++|.+++++|......+++..+++..|..++.+|..++++++++++.. ..+...++++
T Consensus 129 ~~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l 205 (349)
T 3a0r_A 129 LSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNL 205 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCH
Confidence 3456789999999999999999999999875543344456788899999999999999999999943 3567789999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccC-CCcEEEEEeecccCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLDTSKNTAEF 593 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~-~G~v~v~~~~~~~~~~~~~~~~ 593 (1120)
.+++++++..+...+..+++.+.+++++.. ..+.+|+.+|.|||.|||+||+||++ .|.|.|.+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~----------- 273 (349)
T 3a0r_A 206 NELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM----------- 273 (349)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE-----------
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec-----------
Confidence 999999999999999999999988886653 46899999999999999999999995 56777764321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001222 594 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 673 (1120)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 673 (1120)
...+.|+|.|+|+|||++.+++||+||++.+ .+|+||||+|||++
T Consensus 274 -----------------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~g~GlGL~i~~~~ 318 (349)
T 3a0r_A 274 -----------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKI 318 (349)
T ss_dssp -----------------------------TTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHH
T ss_pred -----------------------------CCEEEEEEEECCCCCChHHHhhcCCCCccCC------CCCccchHHHHHHH
Confidence 1247899999999999999999999999643 35999999999999
Q ss_pred HH-HcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 674 VN-KMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 674 Ve-~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|+ .|||.|+++|.+ +||+|+|.||+..
T Consensus 319 v~~~~gg~i~~~~~~-~Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 319 IEDEHGGKIWTENRE-NGVVFIFEIPKTP 346 (349)
T ss_dssp HHHTTCSBCCEEECS-SEEEEEEEEESCT
T ss_pred HHHhCCCEEEEEeCC-CcEEEEEEecCCC
Confidence 99 899999999986 4999999999864
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=2.1e-29 Score=276.40 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=148.3
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001222 440 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 519 (1120)
Q Consensus 440 ~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~ 519 (1120)
-+.|+|||||||||++|.|++|+|.+. ..++...+++..|.+++.++..+ ++++++..+. .....++++.++.
T Consensus 48 llas~IaHELrtPL~~I~~~~elL~~~-~~~~~~~~~l~~I~~~~~~~~~l----l~~~r~~~~~-~~~~~~~~~~~l~- 120 (247)
T 4fpp_A 48 MLAARLCHDFISPASAIVSGLDLLEDP-SAQDMRDDAMNLIASSARKLADL----LQFTRVAFGA-SASAENFDSRELE- 120 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT-TCGGGHHHHHHHHHHHHHHHHHH----HHHHHHHTTC-CSSCCCEEHHHHH-
T ss_pred HHHhccCHHHhHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHH----HHHHHHhhcc-ccccccccHHHHH-
Confidence 367889999999999999999998754 34555666788888888776554 5666665444 3344567776543
Q ss_pred HHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCC-cEEEEEeecccCCCCCCCCCCcccc
Q 001222 520 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPTDRK 598 (1120)
Q Consensus 520 ~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~~~~~~ 598 (1120)
..+...+..+++++.+++++.. ++..+.|++.||++||+||++.| .|.|.+...
T Consensus 121 ---~~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~---------------- 175 (247)
T 4fpp_A 121 ---KLAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAA---------------- 175 (247)
T ss_dssp ---HHHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE----------------
T ss_pred ---HHHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE----------------
Confidence 3445566788898887765432 25678999999999999999876 566654321
Q ss_pred ccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCC--CChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHH
Q 001222 599 KFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG--IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~G--I~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~ 676 (1120)
++ .+.|+|.|+|+| |+++.++++|++|+.. +.+|+||||+|||+||+.
T Consensus 176 ----------------------~~--~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GLGLai~~~iv~~ 225 (247)
T 4fpp_A 176 ----------------------DG--RFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWVQAAYLNALVRA 225 (247)
T ss_dssp ----------------------TT--EEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CC--EEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccHHHHHHHHHHHH
Confidence 12 356778888866 7788888888888632 346999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEe
Q 001222 677 MGGEIKVVKKNSPGTLMQLYLL 698 (1120)
Q Consensus 677 mGG~I~v~S~~g~GT~f~~~lp 698 (1120)
|||+|+++|.+| |++|+|+||
T Consensus 226 hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 226 AGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp TTCEEEEEEETT-EEEEEEEEE
T ss_pred cCCEEEEEEcCC-EEEEEEEec
Confidence 999999999876 999999998
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.94 E-value=2.3e-26 Score=267.82 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=158.9
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001222 436 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 515 (1120)
Q Consensus 436 ~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~ 515 (1120)
..|.+|+++++||||||++.|.++++.+.. ..+.+++.+|.++++++++++. ....+++.
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~ 67 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVM--------KIRMVPIS 67 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHH
Confidence 457899999999999999999998776531 4578899999999999999873 23456778
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHH---HHHHHHHHHHHHHhhcc-------------CCCcEEEEE
Q 001222 516 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG---RVFQIFSNLINNSIKFT-------------SSGHIIIRG 579 (1120)
Q Consensus 516 ~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~---rL~QIL~NLL~NAIKfT-------------~~G~v~v~~ 579 (1120)
.+++.+...+...+..++.++.+.+.... +..|+. ++.|+|.||+.||+||+ +.|.|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 68 FVFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp HHHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 89999999999999887777777665442 356875 55566999999999996 457777765
Q ss_pred eecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhH-----------------
Q 001222 580 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW----------------- 642 (1120)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l----------------- 642 (1120)
... ...+.|+|.|+|+||+++.+
T Consensus 145 ~~~----------------------------------------~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 145 RHE----------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp EEE----------------------------------------TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred EEe----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 321 12478999999999999987
Q ss_pred -------hhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 643 -------ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 643 -------~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
++||+|||+.... .+..+|+||||+|||++++.|||+|+++|.+|+||+|++.||+..
T Consensus 185 ~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp SCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred CCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 8899999876543 334579999999999999999999999999999999999999865
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=8.3e-26 Score=223.88 Aligned_cols=122 Identities=24% Similarity=0.488 Sum_probs=112.5
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+++|||||||++.+|..++.+|++.||. |..|.||.+|++.++.. +||+||+|++|
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~-----------------------~~DlillD~~M 67 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-----------------------DFDFVVTDWNM 67 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC-----------------------CCCEEEEcCCC
Confidence 3579999999999999999999999996 77899999999999753 79999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+|||+|++++||+.+. .+++|||++||+.+.++..+|+++||++||+|||+.++|.++|.+++++
T Consensus 68 P~mdG~el~~~ir~~~~---~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 68 PGMQGIDLLKNIRADEE---LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp SSSCHHHHHHHHHHSTT---TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHhCCC---CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999998643 3579999999999999999999999999999999999999999999875
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=3.8e-23 Score=207.80 Aligned_cols=146 Identities=21% Similarity=0.340 Sum_probs=116.5
Q ss_pred cceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCC
Q 001222 508 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 587 (1120)
Q Consensus 508 ~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 587 (1120)
+.++++|.+++++++..+...+. ++.+.++.+. +..+.+|+.+|.|||.|||+||+||++.|.|.|.+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~~--~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~----- 74 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPSP--TCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSS----- 74 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSCC--CCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-----
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccCC--CceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec-----
Confidence 46789999999999998877654 5566665543 34689999999999999999999999999777665321
Q ss_pred CCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001222 588 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 667 (1120)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 667 (1120)
...+.|+|.|+|+||+++.++++|+||++.+.. ..+|+||||
T Consensus 75 -----------------------------------~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~---~~~g~GlGL 116 (150)
T 1ysr_A 75 -----------------------------------RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGL 116 (150)
T ss_dssp -----------------------------------TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCC
T ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC---CCCCCCcCH
Confidence 123789999999999999999999999986532 356999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 668 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 668 aIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+|||++++.|||+|+++|.+++||+|++.||+.
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred HHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 999999999999999999999999999999974
No 15
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=5.2e-23 Score=206.89 Aligned_cols=146 Identities=23% Similarity=0.345 Sum_probs=127.7
Q ss_pred eeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCC
Q 001222 510 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 510 ~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~ 589 (1120)
+++++.+++++++..+...+..+++.+.+++++.. .+.+|+..|.|||.|||+||+||++. .|.|.+...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 57999999999999999999999999999987664 48899999999999999999999976 666554221
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
...+.|+|.|+|+||+++.++++|++|++.+.. .+|+||||+|
T Consensus 72 ---------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i 114 (152)
T 1id0_A 72 ---------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAV 114 (152)
T ss_dssp ---------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHH
T ss_pred ---------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHH
Confidence 123789999999999999999999999986543 3699999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 670 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
|+++++.|||+|.+++.++.||+|+|.||+...
T Consensus 115 ~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 147 (152)
T 1id0_A 115 AREITEQYEGKIVAGESMLGGARMEVIFGRQHS 147 (152)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEECCCC-
T ss_pred HHHHHHHcCCEEEEEeCCCCcEEEEEEEecccc
Confidence 999999999999999999999999999998653
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=8.9e-23 Score=217.93 Aligned_cols=190 Identities=10% Similarity=0.092 Sum_probs=143.3
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001222 436 NYKSQFLANMSHELRTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 514 (1120)
Q Consensus 436 ~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~-~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL 514 (1120)
+.+.++.+.+.|++++||++|.++++++.... ..+++..+.+..+...+.++...+.+++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 34567889999999999999999999876432 2234455677778888877777777776432 24677
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCC
Q 001222 515 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 594 (1120)
Q Consensus 515 ~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 594 (1120)
.+.++.+...+ ..+++.+.++++...+.....++..|.+|+.||++||+||++.|.|.|.+...
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------------ 158 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL------------ 158 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE------------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEe------------
Confidence 77777766554 56788888877655444445688899999999999999999888888765321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001222 595 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 674 (1120)
...+.|+|.|+|+|||++.+ +|+||||+||++++
T Consensus 159 ----------------------------~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~v 192 (218)
T 3ehh_A 159 ----------------------------WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMRERL 192 (218)
T ss_dssp ----------------------------TTEEEEEEEESSCCCC--------------------------CHHHHHHHHH
T ss_pred ----------------------------CCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHHHHHH
Confidence 12478999999999999865 48999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 675 NKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 675 e~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+.|||+|++.|.+ ||+|+++||+.
T Consensus 193 ~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 193 EFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp HHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred HHcCCEEEEeCCC--CeEEEEEEecC
Confidence 9999999999988 99999999974
No 17
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.89 E-value=5.8e-23 Score=218.56 Aligned_cols=137 Identities=33% Similarity=0.554 Sum_probs=109.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+.+||||||++.++..++.+|++.|+ .|..+.++.+|++.+......... ....+...||+||+|+.||
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~----------~~~~~~~~~dlillD~~lp 130 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREE----------QGSVDKLPFDYIFMDCQMP 130 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHH----------HTCSSCCSCSEEEEESCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccc----------cccccCCCCCEEEEcCCCC
Confidence 56999999999999999999999999 899999999999998652100000 0000123799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHA-MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
+|||++++++||+..... .+++|||++|++. +.+...+|+++|+++||.||++ +|..+|++++++...
T Consensus 131 ~~~G~el~~~lr~~~~~~-~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 131 EMDGYEATREIRKVEKSY-GVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp SSCHHHHHHHHHHHHHTT-TCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred CCCHHHHHHHHHhhhhhc-CCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 999999999999863211 2469999999998 7788889999999999999999 899999998876533
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.89 E-value=1.9e-22 Score=208.74 Aligned_cols=151 Identities=29% Similarity=0.485 Sum_probs=125.1
Q ss_pred eccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCC-CcEEEEEeecccCCCCC
Q 001222 511 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 511 ~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~ 589 (1120)
+|+|.++++++++.+... ..+++.+.+++++. +..+.+|+.+|.+||.|||.||+||++. |.+.|.+...
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~------- 72 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVN------- 72 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEE-------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEc-------
Confidence 689999999999999988 88999999988664 3468999999999999999999999965 5666654321
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
.....+.|+|.|+|+||+++.++++|++|++.+...+...+|+||||+|
T Consensus 73 -------------------------------~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 121 (177)
T 3sl2_A 73 -------------------------------EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAI 121 (177)
T ss_dssp -------------------------------TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHH
T ss_pred -------------------------------cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHH
Confidence 1122478999999999999999999999999877666667899999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 670 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
|+++++.|||+|.+.|.++.||+|++.||+..
T Consensus 122 v~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~ 153 (177)
T 3sl2_A 122 AKEMVQAHGGDIWADSIEGKGTTITFTLPYKE 153 (177)
T ss_dssp HHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEecCCCCeEEEEEEeCCC
Confidence 99999999999999999999999999999864
No 19
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=3.8e-22 Score=200.23 Aligned_cols=147 Identities=27% Similarity=0.398 Sum_probs=125.8
Q ss_pred ccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccC-CCcEEEEEeecccC
Q 001222 507 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLD 585 (1120)
Q Consensus 507 l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~-~G~v~v~~~~~~~~ 585 (1120)
++.+++++.+++++++..+...+..+++++.+++++. +..+.+|+..|.|||.|||+||+||++ .|.|.|.+...
T Consensus 1 l~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~--- 76 (152)
T 3a0y_A 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM--- 76 (152)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC---
T ss_pred CccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec---
Confidence 3567899999999999999999999999999988654 346899999999999999999999995 56666654321
Q ss_pred CCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccc
Q 001222 586 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 665 (1120)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGL 665 (1120)
...+.|+|.|+|+||+++.++++|++|++.+ .+|+||
T Consensus 77 -------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~------~~g~Gl 113 (152)
T 3a0y_A 77 -------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGL 113 (152)
T ss_dssp -------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCC
T ss_pred -------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCC------CCCCCc
Confidence 1247899999999999999999999999643 358999
Q ss_pred hHHHHHHHHH-HcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 666 GLSIVRTLVN-KMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 666 GLaIvk~LVe-~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
||+|||++++ .|||++.+++.+ .||+|++.||+..
T Consensus 114 GL~i~~~~~~~~~gg~~~~~~~~-~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 114 GLSICRKIIEDEHGGKIWTENRE-NGVVFIFEIPKTP 149 (152)
T ss_dssp SHHHHHHHHHTTTSCEEEEEEET-TEEEEEEEEESCC
T ss_pred CHHHHHHHHHHhCCcEEEEecCC-CCEEEEEEeCCCC
Confidence 9999999999 999999999986 4999999999853
No 20
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.88 E-value=3e-22 Score=203.86 Aligned_cols=149 Identities=26% Similarity=0.402 Sum_probs=124.0
Q ss_pred cccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccC
Q 001222 506 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 585 (1120)
Q Consensus 506 ~l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~ 585 (1120)
++..++++|.+++++++..+. .++..+.+++.+. +..+.+|+.+|.|||.|||+||+||+ .|.|.|.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~--- 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE--- 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE---
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEc---
Confidence 466789999999999998753 2445555555333 34689999999999999999999999 78888765321
Q ss_pred CCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccc
Q 001222 586 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 665 (1120)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGL 665 (1120)
...+.|.|.|+|+||+++.++++|++|++.+.. +..+|+||
T Consensus 75 -------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~Gl 115 (161)
T 1bxd_A 75 -------------------------------------PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGL 115 (161)
T ss_dssp -------------------------------------TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSC
T ss_pred -------------------------------------CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCccc
Confidence 124789999999999999999999999987653 33479999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 666 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 666 GLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
||+|||++++.|||+|+++|.++.||+|++.||+...
T Consensus 116 GL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 116 GLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp CCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 9999999999999999999999999999999998654
No 21
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=3e-22 Score=202.55 Aligned_cols=156 Identities=29% Similarity=0.449 Sum_probs=109.4
Q ss_pred cccceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccC--CCcEEEEEeecc
Q 001222 506 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS--SGHIIIRGWCEN 583 (1120)
Q Consensus 506 ~l~~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~--~G~v~v~~~~~~ 583 (1120)
+++.+++++.+++++++..+... ..+++.+.+++++..+ .+.+|+.+|.||+.|||+||+||++ .|.|.|.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45678999999999999999887 8889999998877665 3899999999999999999999997 567777654321
Q ss_pred cCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCc
Q 001222 584 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 663 (1120)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~Gt 663 (1120)
.... ....+...+.|+|.|+|+||+++.++++|++|++.+ .+|+
T Consensus 80 ~~~~------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~------~~g~ 123 (160)
T 1r62_A 80 QLTL------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR------EGGT 123 (160)
T ss_dssp EEEE------------------------------TTEEEEEEEEEEEEEECTTC--------------------------
T ss_pred cccc------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccccCC------CCCC
Confidence 0000 000112358899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 664 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 664 GLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
||||+||+++++.|||+|+++|.+++ |+|++.||+.
T Consensus 124 GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 124 GLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred ccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 99999999999999999999999886 9999999974
No 22
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.86 E-value=4.8e-20 Score=203.30 Aligned_cols=123 Identities=20% Similarity=0.354 Sum_probs=112.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+...|++.|+.|..+.||.+|++.+... ..||+||+|++||+
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~----------------------~~~dlvllD~~mP~ 181 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH----------------------PAIRLVLVDYYMPE 181 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC----------------------TTEEEEEECSCCSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC----------------------CCCCEEEEcCCCCC
Confidence 46999999999999999999999999999999999999998641 24899999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|||++++++||+..+. .++|||++|++.+.+...+|+++||++||.||++.++|..+|.++++..
T Consensus 182 ~dG~~l~~~lr~~~~~---~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 246 (259)
T 3luf_A 182 IDGISLVRMLRERYSK---QQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEAL 246 (259)
T ss_dssp SCHHHHHHHHHHHCCT---TTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCC---CCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhH
Confidence 9999999999986432 4689999999999999999999999999999999999999999988664
No 23
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.86 E-value=4.5e-23 Score=200.95 Aligned_cols=114 Identities=19% Similarity=0.330 Sum_probs=102.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+|||||||++.++..++.+|++.||+|. .|.||++|++.+++ .+||+||+|++||
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~-----------------------~~~DlvllDi~mP 64 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK-----------------------GQFDIAIIDVNLD 64 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH-----------------------CCSSEEEECSSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------------CCCCEEEEecCCC
Confidence 57999999999999999999999999986 79999999999975 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|||+|++++||+. ++|||++||+.+.+. +.++|+++||.|||+.++|.++|.++.++
T Consensus 65 ~~~G~el~~~lr~~-------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 65 GEPSYPVADILAER-------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp SCCSHHHHHHHHHT-------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred CCCHHHHHHHHHcC-------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 99999999999962 589999999886543 45789999999999999999999887664
No 24
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.85 E-value=1.3e-21 Score=204.79 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=120.4
Q ss_pred ceeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcc-------------CCCcE
Q 001222 509 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-------------SSGHI 575 (1120)
Q Consensus 509 ~~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-------------~~G~v 575 (1120)
.+++++.++++++...+...+..+++.+.++++.........+..++.|||.|||.||+||+ +.|.|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35799999999999999999999999888877654322222334556667999999999995 34566
Q ss_pred EEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhH-------------
Q 001222 576 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW------------- 642 (1120)
Q Consensus 576 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l------------- 642 (1120)
.|.+... ...+.|+|.|+|+||+++.+
T Consensus 82 ~I~~~~~----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~ 121 (189)
T 1i58_A 82 ILSARHE----------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 121 (189)
T ss_dssp EEEEEEE----------------------------------------TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHH
T ss_pred EEEEEec----------------------------------------CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhh
Confidence 6654321 12478999999999999987
Q ss_pred -----------hhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001222 643 -----------ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 699 (1120)
Q Consensus 643 -----------~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl 699 (1120)
+++|+||++.... .+..+|+||||+||+++++.|||+|++.|.+++||+|++.||+
T Consensus 122 ~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 122 KAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999975432 2234689999999999999999999999999999999999997
No 25
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.84 E-value=4.4e-20 Score=178.59 Aligned_cols=119 Identities=27% Similarity=0.465 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|++.||+|..+.|+.+|++.+.. ..||+||+|++||+|
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvllD~~~p~~ 59 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-----------------------FTPDLIVLXIMMPVM 59 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT-----------------------BCCSEEEECSCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeccCCCC
Confidence 489999999999999999999999999999999999999853 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||++++++||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 60 ~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 60 DGFTVLKKLQEKEE---WKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CHHHHHHHHHTSTT---TTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhccc---ccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999997532 246999999999999999999999999999999999999999998875
No 26
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.82 E-value=1.5e-19 Score=178.27 Aligned_cols=125 Identities=22% Similarity=0.383 Sum_probs=112.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp~ 60 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK-----------------------NLPDALICDVLLPG 60 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1114 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1114 (1120)
|||++++++||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++....
T Consensus 61 ~~g~~~~~~lr~~~~---~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~~ 128 (136)
T 3t6k_A 61 IDGYTLCKRVRQHPL---TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTIE 128 (136)
T ss_dssp SCHHHHHHHHHHSGG---GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCC---cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCCC
Confidence 999999999997532 24699999999999999999999999999999999999999999999875443
No 27
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.82 E-value=2.2e-19 Score=176.37 Aligned_cols=126 Identities=33% Similarity=0.556 Sum_probs=110.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++||||||++..+..++.+|+..|+ .|..+.+|.+|++.+..... ....||+||+|++||
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------------------~~~~~dlvllD~~mp 63 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------------------KGENYNMIFMDVQMP 63 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------------------HTCCCSEEEECSCCS
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------------------cCCCCCEEEEeCCCC
Confidence 36899999999999999999999997 48899999999998864210 013699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|||++++++||+... ..+|||++|++.+.+...+|+++|+++||.||++.++|..+|.+++...
T Consensus 64 ~~~G~~~~~~lr~~~~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 64 KVDGLLSTKMIRRDLG----YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp SSCHHHHHHHHHHHSC----CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CCChHHHHHHHHhhcC----CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999997421 2589999999999999999999999999999999999999999988654
No 28
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.81 E-value=2.6e-18 Score=188.78 Aligned_cols=120 Identities=28% Similarity=0.591 Sum_probs=111.9
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+++||||||++.++..++.+|++.||+|..+.||.+|++.+.. ..||+||||++||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~dlvl~D~~mp 184 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-----------------------NHIDIVLSDVNMP 184 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-----------------------SCCSEEEEEESSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCC
Confidence 46799999999999999999999999999999999999999965 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|||++++++||+.. +++|||++|++.+.+...+|+++||++||.||++.++|..+|.+++++
T Consensus 185 ~~~G~~l~~~ir~~~-----~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 185 NMDGYRLTQRIRQLG-----LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp SSCCHHHHHHHHHHH-----CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999864 358999999999999999999999999999999999999999988764
No 29
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.81 E-value=3.3e-19 Score=171.78 Aligned_cols=117 Identities=32% Similarity=0.471 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|++.||+|..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlii~D~~~p~~ 59 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-----------------------LQPDLILLDIMLPNK 59 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------------------TCCSEEEEETTSTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999999864 379999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
||++++++||+. .++|||++|++.+.....+++++|+++||.||++.++|..+|++++++
T Consensus 60 ~g~~~~~~lr~~------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 60 DGVEVCREVRKK------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp HHHHHHHHHHTT------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhc------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999963 258999999999999999999999999999999999999999998864
No 30
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.81 E-value=3e-20 Score=207.99 Aligned_cols=119 Identities=23% Similarity=0.309 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+.+||+|||++.++..++.+|+..||.|. .|.||.+|++.+.. .+|||||||++||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-----------------------~~~dlvl~D~~MP 216 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-----------------------RTPGLVLADIQLA 216 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------------------CCCSEEEEESCCT
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEcCCCC
Confidence 45899999999999999999999999999 99999999999975 3799999999999
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1043 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1043 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
+|||+|++++||+.. ++|||++|++. ++..+|+++|||+||+||++.++|..+|.++++..+.
T Consensus 217 d~mdG~e~~~~ir~~~------~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 217 DGSSGIDAVKDILGRM------DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp TSCCTTTTTHHHHHHT------TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHhcC------CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 899999999999863 59999999985 4677899999999999999999999999999977544
No 31
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.81 E-value=4.5e-19 Score=172.92 Aligned_cols=122 Identities=22% Similarity=0.448 Sum_probs=110.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
+++||||||++..+..++.+|++.||. +..+.++.+|++.+.. ...||+||+|++||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~----------------------~~~~dlvi~D~~~p 62 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA----------------------NADTKVLITDWNMP 62 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------------------CTTCCEEEECSCCS
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh----------------------CCCCCEEEEeCCCC
Confidence 579999999999999999999999995 8999999999998864 13699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|||++++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|++++++
T Consensus 63 ~~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 63 EMNGLDLVKKVRSDSR---FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp SSCHHHHHHHHHTSTT---CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHhcCC---CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999997532 2469999999999999999999999999999999999999999998865
No 32
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.8e-19 Score=177.14 Aligned_cols=126 Identities=27% Similarity=0.522 Sum_probs=108.4
Q ss_pred ccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 962 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 962 ~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+++||||||++..+..++.+|++.|+.|..+.++.+|++.+.. ..||+||+|+.|
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~m 68 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-----------------------EDYDAVIVDLHM 68 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCC
Confidence 346899999999999999999999999999999999999999864 379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+|||++++++||+.... ..+.+|||++|++.+.+...+|+++|+++||.||++.++|..+|.++....
T Consensus 69 p~~~g~~~~~~lr~~~~~-~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 69 PGMNGLDMLKQLRVMQAS-GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp SSSCHHHHHHHHHHHHHT-TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHhchhc-cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999975322 234689999999999999999999999999999999999999999987553
No 33
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.78 E-value=6.2e-19 Score=183.57 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+.+||||||++..+..++.+|+..||.|..|.||.+|++.+.. ..||+||+|+.||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp~ 63 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA-----------------------EKFEFITVXLHLGN 63 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT-----------------------SCCSEEEECSEETT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeccCCC
Confidence 5799999999999999999999999999999999999998853 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++.
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 64 DSGLSLIAPLCDLQ-----PDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp EESHHHHHHHHHHC-----TTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred ccHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 99999999999853 369999999999999999999999999999999999999999776643
No 34
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=1.4e-18 Score=170.25 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCC
Q 001222 512 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 591 (1120)
Q Consensus 512 ~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~ 591 (1120)
+++.+.++.+. ..+..+++++.++.+...+.....++..+.|++.||++||+||++.+.|.|.+...
T Consensus 2 v~l~~~l~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~--------- 68 (128)
T 3ehg_A 2 IRLKDELINIK----QILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL--------- 68 (128)
T ss_dssp CCHHHHHHHHH----HHHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE---------
T ss_pred ccHHHHHHHHH----HHHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEe---------
Confidence 45555555544 45567889888877654443445688999999999999999999888888765321
Q ss_pred CCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001222 592 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 671 (1120)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 671 (1120)
...+.++|.|+|+||+++.+ .|+||||+|||
T Consensus 69 -------------------------------~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~ 99 (128)
T 3ehg_A 69 -------------------------------WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMR 99 (128)
T ss_dssp -------------------------------TTEEEEEEEESSCCCSCSSC------------------CCTTSHHHHHH
T ss_pred -------------------------------CCEEEEEEEECCcCcCcccC------------------CCCCccHHHHH
Confidence 12478999999999998754 48999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 672 TLVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 672 ~LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
++++.|||+|+++|.+ ||+|++.||+.
T Consensus 100 ~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 100 ERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp HHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred HHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 9999999999999988 99999999974
No 35
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.77 E-value=8.5e-18 Score=162.79 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~D~~l~~ 59 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD-----------------------VRNGVLVTDLRMPD 59 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG-----------------------CCSEEEEEECCSTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEECCCCC
Confidence 3589999999999999999999999999999999999998753 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|++++++.
T Consensus 60 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 60 MSGVELLRNLGDLK-----INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999752 3689999999999999999999999999999999999999999988654
No 36
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.5e-18 Score=167.89 Aligned_cols=125 Identities=20% Similarity=0.364 Sum_probs=104.0
Q ss_pred eeccHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCC
Q 001222 510 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 589 (1120)
Q Consensus 510 ~~~dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~ 589 (1120)
+.++|.+++++++..+ ..+++.+.++++...+.....|+..|.||+.||++||+||++.|.|.|.+..
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~-------- 70 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKV-------- 70 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEE--------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE--------
Confidence 5688999999998876 6777888877766554434456899999999999999999988888876532
Q ss_pred CCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001222 590 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 669 (1120)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 669 (1120)
++ . +.++|.|+|+||+++. +||||+|
T Consensus 71 -------------------------------~~-~-~~i~v~D~G~gi~~~~---------------------~GlGL~i 96 (129)
T 3zxo_A 71 -------------------------------DD-D-LCIEVTDNGRGMPDEF---------------------TGSGLTN 96 (129)
T ss_dssp -------------------------------SS-E-EEEEEEECCCCCTTTT---------------------CSHHHHH
T ss_pred -------------------------------cC-C-EEEEEecCCCCCCccc---------------------CCcCHHH
Confidence 12 2 7899999999998765 6999999
Q ss_pred HHHHHHHcCCEEEEEEeCC-CceEEEEEEecC
Q 001222 670 VRTLVNKMGGEIKVVKKNS-PGTLMQLYLLLG 700 (1120)
Q Consensus 670 vk~LVe~mGG~I~v~S~~g-~GT~f~~~lpl~ 700 (1120)
||++++.|||++.+.+.++ +|++|++.||+.
T Consensus 97 ~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 97 LRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp HHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred HHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 9999999999999999999 999999999974
No 37
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.77 E-value=5.9e-18 Score=170.52 Aligned_cols=122 Identities=32% Similarity=0.453 Sum_probs=112.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlii~D~~l~~ 63 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL-----------------------TRPDLIISDVLMPE 63 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT-----------------------CCCSEEEEESCCSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999999853 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|+++++.||+... .+.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+++++.
T Consensus 64 ~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 64 MDGYALCRWLKGQPD---LRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp SCHHHHHHHHHHSTT---TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCC---cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999998532 24699999999999999999999999999999999999999999998764
No 38
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.77 E-value=5.6e-18 Score=163.08 Aligned_cols=121 Identities=34% Similarity=0.511 Sum_probs=105.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+... .||+||+|+.||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~-----------------------~~dlvi~D~~l~~~ 58 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN-----------------------KPDLILMDIQLPEI 58 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-----------------------CCSEEEEESBCSSS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-----------------------CCCEEEEeCCCCCC
Confidence 4899999999999999999999999999999999999988652 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 59 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 59 SGLEVTKWLKEDDD---LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp BHHHHHHHHHHSTT---TTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCcc---ccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 99999999997532 24699999999999889999999999999999999999999999988654
No 39
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.77 E-value=1.1e-17 Score=160.36 Aligned_cols=118 Identities=26% Similarity=0.411 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlil~D~~l~~~ 57 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-----------------------HIPDIAIVDLGLPDE 57 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSCCSSS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc-----------------------cCCCEEEEecCCCCC
Confidence 479999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|+++++++|+.. +++|||++|++.+.+...+++++|+++|+.||++.++|..+|++++++
T Consensus 58 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 58 DGLSLIRRWRSND-----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp CHHHHHHHHHHTT-----CCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 9999999999642 368999999999999999999999999999999999999999998765
No 40
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.77 E-value=8e-18 Score=162.34 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..||++..+.++.+|++.+... .||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~-----------------------~~dlvl~D~~l~~~ 60 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-----------------------RPDLVLLDMKIPGM 60 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-----------------------CCCEEEEecCCCCC
Confidence 4899999999999999999999999999999999999998652 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 61 DGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp CHHHHHHHHHHHC-----TTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHhC-----CCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999752 368999999999999999999999999999999999999999988754
No 41
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=8.9e-18 Score=164.38 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-----------------------EFFNLALFXIKLPDM 60 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSBCSSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|++++++
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 61 EGTELLEKAHKLR-----PGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhC-----CCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 9999999999753 368999999999999999999999999999999999999999988754
No 42
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.76 E-value=1.1e-17 Score=160.15 Aligned_cols=116 Identities=26% Similarity=0.486 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.+||||||++..+..++.+|+..||+ +..+.++.+|++.+... .||+||+|+.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~-----------------------~~dlil~D~~l~~ 59 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----------------------KPDIVTMDITMPE 59 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEECSCGG
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc-----------------------CCCEEEEeCCCCC
Confidence 58999999999999999999999999 56899999999998652 6999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
++|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++
T Consensus 60 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 60 MNGIDAIKEIMKID-----PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp GCHHHHHHHHHHHC-----TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999753 3589999999999999999999999999999999999999998865
No 43
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.75 E-value=1.4e-17 Score=161.32 Aligned_cols=121 Identities=22% Similarity=0.456 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. ..||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~ 60 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-----------------------GGYGFVISDWNMP 60 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT-----------------------CCCCEEEEESCCS
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 46899999999999999999999999 79999999999998843 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|++++++||+... .+++|||++|+....+...+++++|+++|+.||++.++|..+|++++++
T Consensus 61 ~~~g~~l~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 61 NMDGLELLKTIRAXXA---MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp SSCHHHHHHHHHC--C---CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc---cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 9999999999997432 2468999999999999999999999999999999999999999988754
No 44
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.2e-17 Score=182.71 Aligned_cols=119 Identities=27% Similarity=0.403 Sum_probs=111.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++..+..++.+|+..||+|..+.|+.+|++.+... .||+||+|++||+
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-----------------------~~dlvllD~~lp~ 79 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET-----------------------RPDAVILDVXMPG 79 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCSS
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-----------------------CCCEEEEeCCCCC
Confidence 57999999999999999999999999999999999999998753 7999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|++++++
T Consensus 80 ~~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 80 MDGFGVLRRLRADG-----IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 99999999999753 368999999999999999999999999999999999999999999865
No 45
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.75 E-value=2.3e-17 Score=157.59 Aligned_cols=116 Identities=28% Similarity=0.467 Sum_probs=108.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||||||++..+..++.+|+..|+.+..+.++.+|++.+... .||+||+|+.||+++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~-----------------------~~dlvl~D~~l~~~~ 59 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-----------------------QPDIIILDLMLPEID 59 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSSCSSSC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC-----------------------CCCEEEEeccCCCCC
Confidence 799999999999999999999999999999999999988652 699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|++++++||+. +++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 60 g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 60 GLEVAKTIRKT------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp HHHHHHHHHHH------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 99999999963 258999999999999999999999999999999999999999998765
No 46
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=1.2e-17 Score=164.03 Aligned_cols=125 Identities=19% Similarity=0.452 Sum_probs=107.9
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+++||||||++..+..++.+|+..|++|..+.++.+|++.+.. .+ |+||+|+.||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~-dlvllD~~lp 61 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH-----------------------EH-KVVFMDVCMP 61 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT-----------------------TC-SEEEEECCSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------cC-CEEEEeCCCC
Confidence 35799999999999999999999999999999999999987732 23 9999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++||++++++||+..+......+|||++|++.+.+...+|+++|+++||.||++.++|..+|+++++..
T Consensus 62 ~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 62 GVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp TTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 999999999999532211111246889999999999999999999999999999999999999988654
No 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.75 E-value=1.4e-17 Score=168.24 Aligned_cols=122 Identities=21% Similarity=0.412 Sum_probs=111.2
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..++||||||++..+..++.+|+..||.+. .+.++.+|++.+... ...||+||+|+.|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~---------------------~~~~dliilD~~l 93 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH---------------------YPNIDIVTLXITM 93 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------------------GGGCCEEEECSSC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---------------------CCCCCEEEEeccC
Confidence 357999999999999999999999999998 999999999999752 1158999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+++|++++++||+.. +.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+++++
T Consensus 94 ~~~~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 157 (157)
T 3hzh_A 94 PKMDGITCLSNIMEFD-----KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHhhC-----CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 9999999999999863 368999999999999999999999999999999999999999988753
No 48
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.75 E-value=2.4e-17 Score=158.37 Aligned_cols=117 Identities=27% Similarity=0.423 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..||.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~l~~~ 59 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-----------------------QSVDLILLDINLPDE 59 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|++++++||+. +++|||++|++.+.+...+++++|+++|+.||++.++|..+|++++++
T Consensus 60 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 60 NGLMLTRALRER------STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp CHHHHHHHHHTT------CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhc------CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999972 358999999999999999999999999999999999999999998865
No 49
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.75 E-value=1.8e-17 Score=162.42 Aligned_cols=121 Identities=23% Similarity=0.400 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+|||+||++..+..++.+|+..| +.+..+.++.+|++.+... .||+||+|+.||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~-----------------------~~dlvilD~~lp 60 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY-----------------------NPNVVILDIEMP 60 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH-----------------------CCSEEEECSSCS
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc-----------------------CCCEEEEecCCC
Confidence 589999999999999999999887 5678899999999998652 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
+++|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|+++++....
T Consensus 61 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 61 GMTGLEVLAEIRKKH-----LNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp SSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHC-----CCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 999999999999742 469999999999999999999999999999999999999999999876543
No 50
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.75 E-value=5.6e-18 Score=167.22 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~-~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
..+||||||++..+..++.+|+. .||+|..+.++.+|++.+.. ...||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~ 61 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD----------------------LDSITLIIMDIAFP 61 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT----------------------CCCCSEEEECSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc----------------------CCCCcEEEEeCCCC
Confidence 46999999999999999999999 99999999999999998742 04799999999999
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1043 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1043 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
+++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++...
T Consensus 62 ~~~~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 62 VEKEGLEVLSAIRNNSR---TANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp SHHHHHHHHHHHHHSGG---GTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCcHHHHHHHHHhCcc---cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 9999999999998322 2469999999999999999999999999999999999999999999987543
No 51
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.75 E-value=1.4e-17 Score=162.03 Aligned_cols=121 Identities=28% Similarity=0.443 Sum_probs=103.9
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~ 62 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-----------------------FTPDLMICDIAMP 62 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT-----------------------CCCSEEEECCC--
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 35799999999999999999999999999999999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1111 (1120)
+++|++++++||+.. +++|||++|+..+.+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 63 RMNGLKLLEHIRNRG-----DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ---CHHHHHHHHHTT-----CCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999753 368999999999999999999999999999999 9999999999998654
No 52
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=2.7e-17 Score=158.21 Aligned_cols=117 Identities=25% Similarity=0.391 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~~~ 60 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------------------YDINLVIMDINLPGK 60 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSSCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCC
Confidence 489999999999999999999999999999999999998864 379999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|++++++||+. +++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 61 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 61 NGLLLARELREQ------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp CHHHHHHHHHHH------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999974 258999999999999999999999999999999999999999988765
No 53
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.74 E-value=2.8e-17 Score=164.71 Aligned_cols=130 Identities=25% Similarity=0.392 Sum_probs=111.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+++||||||++..+..++.+|++.|+ .|..+.++.+|++.++.... ........||+||+|+.|
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~--------------~~~~~~~~~dliilD~~l 69 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK--------------SGRVSAGRAQLVLLDLNL 69 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS--------------SSGGGTTCBEEEEECSBC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc--------------ccccccCCCCEEEEeCCC
Confidence 46999999999999999999999999 89999999999999862100 000012479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++.+.
T Consensus 70 ~~~~g~~~~~~lr~~~~---~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 70 PDMTGIDILKLVKENPH---TRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp SSSBHHHHHHHHHHSTT---TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhccc---ccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999998432 2579999999999999999999999999999999999999999988654
No 54
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.74 E-value=2.4e-17 Score=164.95 Aligned_cols=128 Identities=27% Similarity=0.398 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+..... ......||+||+|+.|
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~----------------~~~~~~~dlillD~~l 71 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGE----------------YENSPRPNLILLDLNL 71 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGG----------------GTTCCCCSEEEECSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccc----------------cccCCCCCEEEEeCCC
Confidence 46899999999999999999999887 89999999999998852100 0001369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+|||++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++.+.
T Consensus 72 p~~~g~~l~~~l~~~~~---~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 72 PKKDGREVLAEIKQNPD---LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp SSSCHHHHHHHHHHCTT---TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCcC---cCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999997521 2468999999999999999999999999999999999999999988764
No 55
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.74 E-value=8.7e-18 Score=167.09 Aligned_cols=124 Identities=12% Similarity=0.178 Sum_probs=112.0
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcC-CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g-~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.+.+||||||++..+..++.+|+..| |.|..+.++.+|+..+... ...||+||+|+.|
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~---------------------~~~~dlvi~D~~l 77 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDG---------------------LDAFDILMIDGAA 77 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHH---------------------HTTCSEEEEECTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhc---------------------CCCCCEEEEeCCC
Confidence 45799999999999999999999999 9999999999998876431 0279999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
|+++|++++++||+.. +.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+++++..
T Consensus 78 ~~~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 78 LDTAELAAIEKLSRLH-----PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp CCHHHHHHHHHHHHHC-----TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred CCccHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 9999999999999853 36899999999999999999999999999999999999999999997753
No 56
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.74 E-value=2.1e-17 Score=161.00 Aligned_cols=122 Identities=21% Similarity=0.358 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..+..++.+|+.. |+.+. .+.++.+|++.+... .||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~-----------------------~~dlvllD~~l~ 59 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK-----------------------RPDILLLDIIMP 59 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC-----------------------CCCEEEEecCCC
Confidence 58999999999999999999987 88875 799999999998652 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
+|+|++++++||+.. .+.+|||++|++.+.+...+++++|+++||.||++.++|..+|++++++...
T Consensus 60 ~~~g~~~~~~l~~~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 126 (130)
T 1dz3_A 60 HLDGLAVLERIRAGF----EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTTP 126 (130)
T ss_dssp SSCHHHHHHHHHHHC----SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHhcC----CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCCC
Confidence 999999999999731 1358999999999999999999999999999999999999999999877543
No 57
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.74 E-value=1e-17 Score=165.16 Aligned_cols=123 Identities=28% Similarity=0.455 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|++.||.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 62 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR-----------------------RPYAAMTVDLNLPD 62 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------------------SCCSEEEECSCCSS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999999965 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHH-HHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK-KCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~-~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
++|++++++||+... .+++|||++|+..+.+... +++++|+++||.||++.++|..+|.+++++..
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 63 QDGVSLIRALRRDSR---TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp SCHHHHHHHHHTSGG---GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCcc---cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998432 2469999999998877777 89999999999999999999999999997643
No 58
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.74 E-value=1.2e-17 Score=162.15 Aligned_cols=121 Identities=24% Similarity=0.413 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. ..||+||+|+.||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~ 62 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-----------------------NPHHLVISDFNMP 62 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT-----------------------SCCSEEEECSSSC
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc-----------------------CCCCEEEEeCCCC
Confidence 36899999999999999999999999 79999999999998863 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 63 KMDGLGLLQAVRANPA---TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp SSCHHHHHHHHTTCTT---STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhcCcc---ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999997532 2469999999999999999999999999999999999999999998764
No 59
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.74 E-value=1.1e-17 Score=161.98 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l~~ 59 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-----------------------RGYDAVFIDLNLPD 59 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESBCSS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999999975 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|++++++||+... .+.+|||++|+..+.+. .+++.+|+++||.||++.++|.+++....+..
T Consensus 60 ~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 60 TSGLALVKQLRALPM---EKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp SBHHHHHHHHHHSCC---SSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhhhc---cCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 999999999998632 24699999999998887 89999999999999999999999999887654
No 60
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=1.9e-17 Score=163.12 Aligned_cols=118 Identities=20% Similarity=0.320 Sum_probs=109.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l~~ 60 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-----------------------NKYDLIFLEIILSD 60 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------CCCSEEEEESEETT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 3689999999999999999999999999999999999998864 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+.. .+|||++|+....+...+++++|+++||.||++.++|..+|++++++
T Consensus 61 ~~g~~l~~~l~~~~------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 61 GDGWTLCKKIRNVT------TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EEHHHHHHHHHTTC------CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCC------CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999642 58999999999999999999999999999999999999999988765
No 61
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.74 E-value=9.5e-18 Score=165.05 Aligned_cols=122 Identities=10% Similarity=0.160 Sum_probs=111.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~D~~l~~ 62 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS-----------------------DDAIGMIIEAHLED 62 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC-----------------------TTEEEEEEETTGGG
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-----------------------cCCCEEEEeCcCCC
Confidence 3699999999999999999999999999999999999987742 47999999999999
Q ss_pred --CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1044 --MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1044 --mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
++|++++++||+.. +++|||++|+..+.+...+|+++|+++||.||++.++|..+|.++......
T Consensus 63 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 63 KKDSGIELLETLVKRG-----FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp BTTHHHHHHHHHHHTT-----CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHhCC-----CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999853 469999999999999999999999999999999999999999999876543
No 62
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.73 E-value=3.5e-17 Score=164.35 Aligned_cols=119 Identities=22% Similarity=0.315 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~D~~l~~ 70 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-----------------------REVDLVISAAHLPQ 70 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSS
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc-----------------------CCCCEEEEeCCCCc
Confidence 5699999999999999999999999999999999999999965 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|.+++++
T Consensus 71 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 71 MDGPTLLARIHQQY-----PSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SCHHHHHHHHHHHC-----TTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHC-----CCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999843 468999999999999999999999 999999999999999999988754
No 63
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.73 E-value=3.5e-17 Score=163.81 Aligned_cols=121 Identities=21% Similarity=0.380 Sum_probs=111.3
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
..++||||||++..+..++.+|+..| +.|..+.++.+|++.+.. ..||+||+|+.
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlii~D~~ 75 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK-----------------------ESVDIAILDVE 75 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT-----------------------SCCSEEEECSS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc-----------------------cCCCEEEEeCC
Confidence 35799999999999999999999888 789999999999998853 47999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
||+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 76 l~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 76 MPVKTGLEVLEWIRSEK-----LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CSSSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999853 4689999999999999999999999999999999999999999998764
No 64
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=2.8e-17 Score=162.16 Aligned_cols=117 Identities=23% Similarity=0.376 Sum_probs=108.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-----------------------~~dlvllD~~l~~~~ 62 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS-----------------------KPQLIILDLKLPDMS 62 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSBCSSSB
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc-----------------------CCCEEEEecCCCCCC
Confidence 899999999999999999999999999999999999998652 699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|++++++
T Consensus 63 g~~l~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 63 GEDVLDWINQND-----IPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp HHHHHHHHHHTT-----CCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999752 368999999999999999999999999999999999999999988754
No 65
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.73 E-value=3.6e-17 Score=161.33 Aligned_cols=121 Identities=30% Similarity=0.481 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi~D~~l~~~ 60 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA-----------------------TPPDLVLLDIMMEPM 60 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
||++++++||+... .+++|||++|+.........++.+|+++||.||++.++|..+|.+++++.
T Consensus 61 ~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 61 DGWETLERIKTDPA---TRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp CHHHHHHHHHHSTT---TTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCcc---cCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999997532 24699999999887777777788889999999999999999999988654
No 66
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.73 E-value=3.2e-17 Score=162.60 Aligned_cols=122 Identities=23% Similarity=0.462 Sum_probs=111.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+..|+. |..+.++.+|++.+.. .+||+||+|+.|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l 61 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-----------------------AKYDLIILDIGL 61 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT-----------------------CCCSEEEECTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc-----------------------CCCCEEEEeCCC
Confidence 469999999999999999999999988 8999999999999853 479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1111 (1120)
|+++|++++++||+... .+.+|||++|+..+.+...+|+++|+++||.||+ +.++|..+|.+++++.
T Consensus 62 ~~~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 62 PIANGFEVMSAVRKPGA---NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp GGGCHHHHHHHHHSSST---TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccc---ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHH
Confidence 99999999999997432 2569999999999999999999999999999999 9999999999988763
No 67
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.73 E-value=5.6e-17 Score=159.01 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=110.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..|++|..+.++.+|+..+... .+||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~----------------------~~~dlvi~D~~l~~ 64 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ----------------------KRIGLMITDLRMQP 64 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC----------------------TTEEEEEECSCCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC----------------------CCCcEEEEeccCCC
Confidence 46999999999999999999999999999999999999988642 24999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
++|++++++||+.. .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++.....
T Consensus 65 ~~g~~~~~~l~~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 65 ESGLDLIRTIRASE----RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp SCHHHHHHHHHTST----TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhcC----CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 99999999999752 246999999999999999999999999999999999999999999987653
No 68
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.73 E-value=2.6e-17 Score=161.62 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=111.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.+... .||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~-----------------------~~dlvi~d~~l~~ 63 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH-----------------------APDVIITDIRMPK 63 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH-----------------------CCSEEEECSSCSS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc-----------------------CCCEEEEeCCCCC
Confidence 47999999999999999999999999999999999999999753 7999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.++++..
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 64 LGGLEMLDRIKAGG-----AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp SCHHHHHHHHHHTT-----CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999753 4689999999999999999999999999999999999999999998653
No 69
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.73 E-value=1.8e-17 Score=161.92 Aligned_cols=120 Identities=19% Similarity=0.354 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
++||||||++..+..++.+|++.|+.+. .+.++.+|++.+... .||+||+|+.||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-----------------------~~dlii~d~~l~~ 58 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL-----------------------KPDIVIIDVDIPG 58 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH-----------------------CCSEEEEETTCSS
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc-----------------------CCCEEEEecCCCC
Confidence 6899999999999999999999999998 899999999998753 7999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
++|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|++++++..
T Consensus 59 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 59 VNGIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp SCHHHHHHHHHHTT-----CCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHhcC-----CCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 99999999999753 36899999999999899999999999999999999999999999997653
No 70
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.73 E-value=5.2e-17 Score=159.09 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-----------------------~~dlvl~D~~l~~~ 60 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE-----------------------KPDLIVLDVMLPKL 60 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESSCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc-----------------------CCCEEEEecCCCCC
Confidence 5899999999999999999999999999999999999988652 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
+|++++++||+.. +.+|||++|++.......+++++|+++||.||++.++|..+|++++++..
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 61 DGIEVCKQLRQQK-----LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp CHHHHHHHHHHTT-----CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCC-----CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9999999999753 35899999999988888999999999999999999999999999887643
No 71
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.4e-17 Score=158.79 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCC
Q 001222 513 DLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 592 (1120)
Q Consensus 513 dL~~li~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~ 592 (1120)
+|.+.+++++..+ ..+++.+.++++...+.....++..|.+|+.||++||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777765 56677777766555443334468899999999999999999988887765321
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001222 593 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 672 (1120)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 672 (1120)
.. +.++|+|+|+||+++. +||||++||+
T Consensus 68 ------------------------------~~-~~i~v~D~G~gi~~~~---------------------~GlGL~~~~~ 95 (124)
T 3zxq_A 68 ------------------------------DD-VRVEVVDDGVGISGDI---------------------TESGLRNLRQ 95 (124)
T ss_dssp ------------------------------EE-EEEEEEECCCSSCGGG---------------------SHHHHHHHHH
T ss_pred ------------------------------CC-EEEEEEECCCCCCccc---------------------cccCHHHHHH
Confidence 22 7799999999999876 3999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001222 673 LVNKMGGEIKVVKKNSPGTLMQLYLLLG 700 (1120)
Q Consensus 673 LVe~mGG~I~v~S~~g~GT~f~~~lpl~ 700 (1120)
+++.|||++.+.|.+++||+|+++||+.
T Consensus 96 ~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 96 RADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp HHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred HHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 9999999999999999999999999974
No 72
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.73 E-value=5.8e-17 Score=160.38 Aligned_cols=130 Identities=16% Similarity=0.261 Sum_probs=112.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.... .....||+||+|+.|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~------------------~~~~~~dlvi~D~~l 70 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY------------------AAGRWPSIICIDINM 70 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH------------------TSSCCCSEEEEESSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh------------------ccCCCCCEEEEcCCC
Confidence 46999999999999999999999999 9999999999999986421 012479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
|+++|++++++||+.... ...++|||++|+..+.+...+++++| +++||.||++.++|..+|.++.....
T Consensus 71 ~~~~g~~~~~~l~~~~~~-~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 71 PGINGWELIDLFKQHFQP-MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp SSSCHHHHHHHHHHHCGG-GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHhhhh-ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999984311 12468999999999999999999999 99999999999999999999887653
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.73 E-value=5.6e-17 Score=158.89 Aligned_cols=129 Identities=25% Similarity=0.358 Sum_probs=111.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+.+||||||++..+..++.+|+..|+ .|..+.++.+|++.+..... ......||+||+|+.|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~----------------~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGE----------------YANASRPDLILLXLNL 65 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGG----------------GGSCCCCSEEEECSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccc----------------cccCCCCcEEEEecCC
Confidence 46899999999999999999999998 99999999999998853000 0001479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 66 ~~~~g~~~~~~l~~~~~---~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPT---LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp SSSCHHHHHHHHHHSTT---GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcc---cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998532 24689999999999999999999999999999999999999999988653
No 74
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.73 E-value=3.1e-17 Score=160.06 Aligned_cols=121 Identities=18% Similarity=0.284 Sum_probs=105.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+ .|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 59 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-----------------------HPPDVLISDVNMDG 59 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSSCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3699999999999999999999 89999999999999999865 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
++|++++++||+... .+++|||++|+..+.+. .+++++|+++||.||++.++|..+|.+++++..
T Consensus 60 ~~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 60 MDGYALCGHFRSEPT---LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp SCHHHHHHHHHHSTT---TTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCCc---cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 999999999998532 24699999999988777 899999999999999999999999999997643
No 75
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.73 E-value=5e-17 Score=155.45 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..++.+|+..|+.+..+.++.+|+..+... .||+||+|+.||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~dlvi~D~~l~~~ 58 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR-----------------------KPDLIILDLGLPDG 58 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESEETTE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC-----------------------CCCEEEEeCCCCCC
Confidence 4799999999999999999999999999999999999887642 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|++++++||+. +.+|||++|++...+...+++++|+++|+.||++.++|..+|++++++
T Consensus 59 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 59 DGIEFIRDLRQW------SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp EHHHHHHHHHTT------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhC------CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 999999999942 358999999999999999999999999999999999999999988765
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=1.2e-17 Score=193.38 Aligned_cols=117 Identities=24% Similarity=0.331 Sum_probs=110.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||||||++..+..++.+|++.||.|..|.||.+|++.+.. ..||+||+|++||+||
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~DlvllDi~mP~~d 58 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-----------------------LFFPVIVLDVWMPDGD 58 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------BCCSEEEEESEETTEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999999975 3799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|++++++||+.. +++|||++|++.+.+...+|+++||++||.||++.++|..+|.++++.
T Consensus 59 G~ell~~lr~~~-----~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 118 (368)
T 3dzd_A 59 GVNFIDFIKENS-----PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368)
T ss_dssp TTTHHHHHHHHC-----TTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999763 368999999999999999999999999999999999999999998864
No 77
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.72 E-value=1.1e-16 Score=157.75 Aligned_cols=124 Identities=20% Similarity=0.356 Sum_probs=112.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-cCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEK-VGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~-~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+. .|++ |..+.++.+|++.+.. ..||+||+|+.|
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l 64 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-----------------------VKPDVVMLDLMM 64 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-----------------------TCCSEEEEETTC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeccc
Confidence 57999999999999999999999 9999 9999999999999875 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
|+++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|++++++...
T Consensus 65 ~~~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 65 VGMDGFSICHRIKSTPA---TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp TTSCHHHHHHHHHTSTT---TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CCCcHHHHHHHHHhCcc---ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 99999999999997422 2469999999999999999999999999999999999999999999977544
No 78
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.72 E-value=9e-17 Score=158.97 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=110.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+... ...||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~---------------------~~~~dlvi~d~~l~~ 61 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTEN---------------------CNSIDVVITDMKMPK 61 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT---------------------TTTCCEEEEESCCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhC---------------------CCCCCEEEEeCCCCC
Confidence 36899999999999999999999999999999999999998631 247999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 62 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 62 LSGMDILREIKKIT-----PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp SCHHHHHHHHHHHC-----TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC-----CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999853 469999999999999999999999999999999999999999988764
No 79
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.6e-17 Score=160.80 Aligned_cols=121 Identities=26% Similarity=0.401 Sum_probs=110.9
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+.+||||||++..+..++.+|+..|+. +..+.++.+|++.+... .||+||+|+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-----------------------~~dlii~d~~ 70 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH-----------------------LPDVALLDYR 70 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEETT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc-----------------------CCCEEEEeCC
Confidence 4679999999999999999999999955 55899999999999753 7999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
||+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 71 l~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 71 MPGMDGAQVAAAVRSYE-----LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp CSSSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHhcC-----CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999753 4689999999999999999999999999999999999999999998764
No 80
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.72 E-value=5.1e-18 Score=166.64 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC-CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g-~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
..+||||||++..+..++.+|+..| |+|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~D~~l~ 70 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD-----------------------TRPGIVILDLGGG 70 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT-----------------------CCCSEEEEEEETT
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc-----------------------cCCCEEEEeCCCC
Confidence 4689999999999999999999999 999999999999987742 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.++++.
T Consensus 71 ~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 71 DLLGKPGIVEARALW-----ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GGGGSTTHHHHHGGG-----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CchHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999864 268999999999999999999999999999999999999999988764
No 81
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.72 E-value=2.2e-17 Score=163.26 Aligned_cols=119 Identities=29% Similarity=0.394 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ...||+||+|+.||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~~ 62 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG----------------------GWYPDLILMDIELGE 62 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------------------TCCCSEEEEESSCSS
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc----------------------CCCCCEEEEeccCCC
Confidence 4699999999999999999999999999999999999998863 147999999999995
Q ss_pred -CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 -MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 -mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 63 GMDGVQTALAIQQI------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp SCCHHHHHHHHHHH------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999974 258999999999888888999999999999999999999999998865
No 82
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.72 E-value=5.7e-17 Score=161.20 Aligned_cols=122 Identities=23% Similarity=0.413 Sum_probs=112.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-----------------------~~dlii~d~~l~~ 64 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT-----------------------HPHLIITEANMPK 64 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCSS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC-----------------------CCCEEEEcCCCCC
Confidence 57999999999999999999999999999999999999998753 6999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 65 ~~g~~~~~~l~~~~~---~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 65 ISGMDLFNSLKKNPQ---TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp SCHHHHHHHHHTSTT---TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCcc---cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999997322 24699999999999999999999999999999999999999999988654
No 83
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.72 E-value=2.3e-17 Score=159.43 Aligned_cols=122 Identities=31% Similarity=0.475 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~~~ 59 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-----------------------PWPDLILLAWMLPGG 59 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS-----------------------SCCSEEEEESEETTE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-----------------------cCCCEEEEecCCCCC
Confidence 489999999999999999999999999999999999987642 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
+|++++++||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 124 (127)
T 2jba_A 60 SGIQFIKHLRRESM---TRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS 124 (127)
T ss_dssp EHHHHHHHHHTSTT---TTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhCcc---cCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhccc
Confidence 99999999997532 246999999999988889999999999999999999999999999987653
No 84
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.71 E-value=1.1e-16 Score=155.84 Aligned_cols=121 Identities=21% Similarity=0.377 Sum_probs=105.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+.+||||||++..+..++.+|++.|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l~~ 62 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-----------------------FEPAIMTLDLSMPK 62 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------TCCSEEEEESCBTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCCC
Confidence 4699999999999999999999999999999999999999865 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|++++++||+... ...+|||++|+.... ...+++++|+++||.||++.++|..+|.+.....
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 63 LDGLDVIRSLRQNKV---ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp BCHHHHHHHHHTTTC---SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHhcCc---cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 999999999997532 134667777666555 7889999999999999999999999999988654
No 85
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.71 E-value=9.6e-17 Score=159.18 Aligned_cols=130 Identities=25% Similarity=0.408 Sum_probs=112.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC--CCccEEEEeC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT--PRFDLILMDC 1039 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DlILmD~ 1039 (1120)
+.+||||||++..+..++.+|+..|+ .|..+.++.+|++.+..... ..... ..||+||+|+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~---------------~~~~~~~~~~dlvi~D~ 70 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGS---------------YCNPDIAPRPAVILLDL 70 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCS---------------SSCGGGCCCCSEEEECS
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhccc---------------ccCcccCCCCcEEEEEC
Confidence 56899999999999999999999998 89999999999999863100 00000 4799999999
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1040 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1040 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
.||+++|++++++||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 71 ~l~~~~g~~~~~~l~~~~~---~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 71 NLPGTDGREVLQEIKQDEV---LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp CCSSSCHHHHHHHHTTSTT---GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCcc---cCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998532 24689999999999999999999999999999999999999999988654
No 86
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.71 E-value=6.7e-17 Score=176.94 Aligned_cols=119 Identities=27% Similarity=0.425 Sum_probs=111.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~DlvllD~~lp~ 93 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-----------------------DHPDLILLDLGLPD 93 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEECCSCH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCC
Confidence 4699999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+||++++++||+. +.+|||++|++.+.+...+|+++|+++||.||++.++|..+|+.++++.
T Consensus 94 ~~G~~l~~~lr~~------~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 94 FDGGDVVQRLRKN------SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp HHHHHHHHHHHTT------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 9999999999962 3589999999999999999999999999999999999999999998764
No 87
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.71 E-value=6.1e-17 Score=154.02 Aligned_cols=113 Identities=25% Similarity=0.440 Sum_probs=102.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001222 966 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1045 (1120)
Q Consensus 966 ~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md 1045 (1120)
+||||||++..+..++..|+..|+.+..+.++.+|++.+.. ..||+||+|+.||+++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~~ 59 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-----------------------GNYDLVILDIEMPGIS 59 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSCCSSSC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEECCCCCCC
Confidence 79999999999999999999999999999999999998864 3699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
|++++++||+.. +++|||++|++.... .+++++|+++||.||++.++|..+|++++
T Consensus 60 g~~~~~~l~~~~-----~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 60 GLEVAGEIRKKK-----KDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp HHHHHHHHHHHC-----TTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-----CCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 999999999753 358999999986554 67889999999999999999999998865
No 88
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.70 E-value=1.5e-16 Score=169.38 Aligned_cols=120 Identities=25% Similarity=0.399 Sum_probs=109.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC-CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g-~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+..| +.+ ..+.++.+|++.+... .||+||+|+.|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~-----------------------~~dlvllD~~l 61 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL-----------------------DPDLILLDLNM 61 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEETTS
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc-----------------------CCCEEEEeCCC
Confidence 3689999999999999999999874 887 6899999999988653 69999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+|||++++++||+.. +.+|||++|++.+.+...+|+++|+++||.||++.++|..+|.+++++.
T Consensus 62 p~~~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 62 PGMNGLETLDKLREKS-----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp TTSCHHHHHHHHHHSC-----CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHhC-----CCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999753 3689999999999999999999999999999999999999999998764
No 89
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.70 E-value=6.5e-17 Score=171.05 Aligned_cols=119 Identities=19% Similarity=0.288 Sum_probs=109.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp~ 60 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP-----------------------EQHGCLVLDMRMPG 60 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT-----------------------TSCEEEEEESCCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc-----------------------cCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999998742 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|||++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.++++.
T Consensus 61 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 61 MSGIELQEQLTAIS-----DGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999753 368999999999988899999999999999999999999999887754
No 90
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.70 E-value=2.1e-16 Score=158.33 Aligned_cols=119 Identities=23% Similarity=0.294 Sum_probs=108.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+..+|+. |++|..+.++.+|++.+... .+||+||+|+.||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~----------------------~~~dlvi~D~~l~~ 60 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS----------------------DPFSVIMVDMRMPG 60 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS----------------------CCCSEEEEESCCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC----------------------CCCCEEEEeCCCCC
Confidence 46999999999999999999986 99999999999999998642 35799999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|.+++++
T Consensus 61 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 61 MEGTEVIQKARLIS-----PNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp SCHHHHHHHHHHHC-----SSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcC-----CCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999753 468999999999999999999999 999999999999999999888754
No 91
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.70 E-value=1.5e-16 Score=157.22 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~-~~~ 59 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-----------------------EKIDLVFVDV-FEG 59 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT-----------------------SCCSEEEEEC-TTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeC-CCC
Confidence 4689999999999999999999999999999999999999853 4799999999 999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
++|+++++.||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++...
T Consensus 60 ~~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 60 EESLNLIRRIREEF-----PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp HHHHHHHHHHHHHC-----TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHC-----CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999753 369999999999999999999999999999999999999999999876543
No 92
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.69 E-value=7.5e-17 Score=159.09 Aligned_cols=120 Identities=19% Similarity=0.318 Sum_probs=100.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+.. +.|..+.++.+|++.+... .||+||+|+.||+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~-----------------------~~dlvi~D~~l~~ 58 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH-----------------------HPDLVILDMDIIG 58 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH-----------------------CCSEEEEETTC--
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC-----------------------CCCEEEEeCCCCC
Confidence 358999999999999999999988 9999999999999999753 7999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+... .+.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+++++
T Consensus 59 ~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 59 ENSPNLCLKLKRSKG---LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ----CHHHHHHTSTT---CTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCcc---cCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 999999999998542 2469999999999998889999999999999999999999999998765
No 93
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.69 E-value=3.2e-16 Score=154.00 Aligned_cols=118 Identities=25% Similarity=0.329 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.++||||||++..+..++.+|+..||++. .+.++.+|++.+... .||+||+|+.||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-----------------------~~dlii~d~~~~ 65 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL-----------------------RPDIALVDIMLC 65 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESSCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC-----------------------CCCEEEEecCCC
Confidence 57999999999999999999999999999 599999999998753 699999999999
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++|++++++||+. +++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 66 ~~~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 66 GALDGVETAARLAAG------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp SSSCHHHHHHHHHHH------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 89999999999985 258999999999999999999999999999999999999999998865
No 94
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.69 E-value=1.6e-16 Score=167.92 Aligned_cols=117 Identities=32% Similarity=0.477 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.+||||||++..+..+..+|+..||.|. .+.++.+|++.+... .||+||+|+.||+
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~-----------------------~~dlvi~D~~~p~ 70 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH-----------------------KPDLVIMDVKMPR 70 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESSCSS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc-----------------------CCCEEEEeCCCCC
Confidence 5899999999999999999999999998 899999999998653 6999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|||+++++.||+.. ..|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 71 ~~g~~~~~~l~~~~------~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 71 RDGIDAASEIASKR------IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp SCHHHHHHHHHHTT------CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcC------CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999742 25999999999999999999999999999999999999999887653
No 95
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=1.9e-16 Score=169.50 Aligned_cols=119 Identities=29% Similarity=0.428 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~~~ 59 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-----------------------EPFDVVILDIMLPVH 59 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 689999999999999999999999999999999999998864 379999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 60 ~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 60 DGWEILKSMRESG-----VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp CHHHHHHHHHHTT-----CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999753 3689999999999999999999999999999999999999999988653
No 96
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.69 E-value=3.3e-16 Score=157.30 Aligned_cols=119 Identities=21% Similarity=0.354 Sum_probs=109.6
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
.+++||||||++..+..+..+|+..|++|..+.++.+|++.+.. ..||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~ 62 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG-----------------------TSVQLVISDMRMP 62 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT-----------------------SCCSEEEEESSCS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 35799999999999999999999999999999999999999853 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhh
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+++|+++++.||+.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|.++++
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 63 EMGGEVFLEQVAKSY-----PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp SSCHHHHHHHHHHHC-----TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 999999999999853 368999999999999999999998 99999999999999999988764
No 97
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.69 E-value=5.8e-17 Score=189.43 Aligned_cols=119 Identities=25% Similarity=0.454 Sum_probs=106.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++.++..++.+|++.||+|..+.+|.+|++.+.. ..||+||+|++||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-----------------------~~~dlvllD~~mp~ 61 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-----------------------EQPDLVICDLRMPQ 61 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-----------------------SCCSEEEECCCSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEcCCCCC
Confidence 4689999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~ 1110 (1120)
|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||+ +.++|..+|.+++++
T Consensus 62 ~~G~~~~~~lr~~~-----~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 62 IDGLELIRRIRQTA-----SETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp SCTHHHHHHHHHTT-----CCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC-----CCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 99999999999753 469999999999999999999999999999999 688898888877643
No 98
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.69 E-value=2.1e-16 Score=188.21 Aligned_cols=119 Identities=31% Similarity=0.423 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..|+.|..+.+|.+|++.+... .||+||+|+.||+|
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~-----------------------~~dlvllD~~mp~~ 58 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-----------------------LPDIILLDVMMPGM 58 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC-----------------------CCCEEEEcCCCCCC
Confidence 4899999999999999999999999999999999999998652 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||++++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|+++++
T Consensus 59 ~G~~~~~~l~~~~~---~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 59 DGFTVCRKLKDDPT---TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp CHHHHHHHHHHSTT---TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcc---cCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999997532 246999999999999999999999999999999999999999988764
No 99
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=1.1e-16 Score=158.09 Aligned_cols=121 Identities=24% Similarity=0.355 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l~~ 63 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK-----------------------GFSGVVLLDIMMPG 63 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------------------CCCEEEEEESCCSS
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 5799999999999999999999999999999999999999864 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|++++++
T Consensus 64 ~~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 64 MDGWDTIRAILDNSL---EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp SCHHHHHHHHHHTTC---CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcc---cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999998322 2469999999998888888999999999999999999999999998865
No 100
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.68 E-value=4.4e-16 Score=153.03 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=110.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP- 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP- 1042 (1120)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~~~~ 59 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-----------------------ENPEVVLLDMNFTS 59 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH-----------------------SCEEEEEEETTTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc-----------------------CCCCEEEEeCCcCC
Confidence 3689999999999999999999999999999999999999875 3699999999999
Q ss_pred ----CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001222 1043 ----KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1112 (1120)
Q Consensus 1043 ----~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1112 (1120)
+++|++++++||+.. +++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 60 ~~~~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 60 GINNGNEGLFWLHEIKRQY-----RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp -----CCHHHHHHHHHHHC-----TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCCCCccHHHHHHHHHhhC-----cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999752 46999999999999999999999999999999999999999999987643
No 101
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.68 E-value=1e-16 Score=158.96 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=100.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHH--hcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 965 LRILLAEDTPLIQIVACKILE--KVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~--~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
++||||||++..+..+..+|+ ..|+.+. .+.++.+|++.+.. ..||+||+|+.|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l 59 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-----------------------HPPNVLLTDVRM 59 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-----------------------SCCSEEEEESCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc-----------------------CCCCEEEEeCCC
Confidence 489999999999999999997 3688877 89999999998843 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 60 p~~~g~~l~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 60 PRMDGIELVDNILKLY-----PDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhC-----CCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999742 368999999999888889999999999999999999999999887754
No 102
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.67 E-value=4.8e-16 Score=153.23 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=104.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..+..+|+.. |.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~lp~~ 57 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE-----------------------EWVQVIICDQRMPGR 57 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH-----------------------SCEEEEEEESCCSSS
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 37999999999999999999875 999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-GMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
||++++++||+.. +++|||++|++.+.....++++. |+++||.||++.++|..+|.++++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 58 TGVDFLTEVRERW-----PETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp CHHHHHHHHHHHC-----TTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-----CCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 9999999999752 35899999999888888888876 5999999999999999999887653
No 103
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.67 E-value=5.6e-16 Score=155.37 Aligned_cols=120 Identities=27% Similarity=0.380 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-cCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEK-VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~-~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+. .|+.+. .+.++.+|++.+.. ..||+||+|+.|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l 61 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE-----------------------TTPDIVVMDLTL 61 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT-----------------------TCCSEEEECSCC
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCC
Confidence 46999999999999999999998 799988 89999999999864 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 62 ~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 62 PGPGGIEATRHIRQWD-----GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHhC-----CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 9999999999999863 3589999999999999999999999999999999999999999988654
No 104
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.67 E-value=3.8e-16 Score=156.99 Aligned_cols=119 Identities=22% Similarity=0.360 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dliild~~l~~ 59 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA-----------------------DFAGIVISDIRMPG 59 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT-----------------------TCCSEEEEESCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999987742 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
++|+++++.||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.++++.
T Consensus 60 ~~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 60 MDGLALFRKILALD-----PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp SCHHHHHHHHHHHC-----TTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC-----CCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999753 369999999999999999999999999999999999999999888754
No 105
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.67 E-value=1.9e-16 Score=156.42 Aligned_cols=122 Identities=38% Similarity=0.657 Sum_probs=104.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlvllD~~lp~ 66 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-----------------------RQFDVIIMDIQMPV 66 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-----------------------SCCSEEEECTTCCS
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999998864 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+||++++++||+.......+.+|||++|+........ ++|+++||.||++.++|..+|.++++..
T Consensus 67 ~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 67 MDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 9999999999975321112468999999876654433 7899999999999999999999988654
No 106
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.67 E-value=5.8e-16 Score=148.96 Aligned_cols=120 Identities=25% Similarity=0.408 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-C
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-K 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP-~ 1043 (1120)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.|| .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-----------------------~~dlvi~d~~~~~~ 62 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD-----------------------RPDLVVLAVDLSAG 62 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH-----------------------CCSEEEEESBCGGG
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc-----------------------CCCEEEEeCCCCCC
Confidence 5899999999999999999999999999999999999998653 699999999999 9
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
++|++++++||+... .+++|||++ +....+...+++++|+++|+.||++.++|..+|+++++..
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 63 QNGYLICGKLKKDDD---LKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp CBHHHHHHHHHHSTT---TTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHhcCcc---ccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 999999999998532 246999999 8888888899999999999999999999999999987653
No 107
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.67 E-value=3.3e-16 Score=182.55 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~DlvllD~~mp~~ 57 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-----------------------KHFNVVLLDLLLPDV 57 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESBCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999999864 379999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||++++++||+.. +++|||++|++.+.+...+|+++|++|||.||++.++|..+|.++++
T Consensus 58 dG~ell~~lr~~~-----~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 58 NGLEILKWIKERS-----PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 9999999999753 46999999999999999999999999999999999999999988764
No 108
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.67 E-value=6.9e-16 Score=152.40 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=110.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.... ......||+||+|+.|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~-----------------~~~~~~~dlii~D~~l 69 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN-----------------KENKIHPKLILLDINI 69 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT-----------------TCCCCCCSEEEEETTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc-----------------cccCCCCCEEEEecCC
Confidence 46899999999999999999999998 9999999999999986310 0001479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|.+++......
T Consensus 70 ~~~~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 70 PKMNGIEFLKELRDDSS---FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp TTSCHHHHHHHHTTSGG---GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcCcc---ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999998532 2469999999999999999999999999999999999999998765543
No 109
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.67 E-value=2.2e-16 Score=169.85 Aligned_cols=119 Identities=25% Similarity=0.418 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~~ 63 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-----------------------NRPDAIVLDINMPV 63 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999998864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+||+++++.||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 64 LDGVSVVTALRAMD-----NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999753 368999999999988889999999999999999999999999998865
No 110
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.66 E-value=1.4e-15 Score=149.46 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=107.0
Q ss_pred ccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 962 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 962 ~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+|| |
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi----~ 68 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------------------RNYDLVM----V 68 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------------------SCCSEEE----E
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-----------------------CCCCEEE----E
Confidence 346799999999999999999999999999999999999999864 3799999 9
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1111 (1120)
|+++|++++++||+. + .++|||++|+..+.+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 69 ~~~~g~~~~~~l~~~-~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 69 SDKNALSFVSRIKEK-H----SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp CSTTHHHHHHHHHHH-S----TTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cCccHHHHHHHHHhc-C----CCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999975 2 158999999999999999999999999999999 9999999999988654
No 111
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.66 E-value=2.6e-16 Score=153.47 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=107.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. .. ||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------------------~~-~dlvi~D~~l~~ 58 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-----------------------NK-QDIIILDLMMPD 58 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-----------------------CT-TEEEEEECCTTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-----------------------cC-CCEEEEeCCCCC
Confidence 368999999999999999999999999999999999987663 24 999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMN-----ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1113 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1113 (1120)
++|++++++||+.. +.+|||++|++.+. +...+++++|+++||.||++.++|..+|.++......
T Consensus 59 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 59 MDGIEVIRHLAEHK-----SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp THHHHHHHHHHHTT-----CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred CCHHHHHHHHHhCC-----CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999753 46899999999875 6677899999999999999999999999999876544
No 112
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.66 E-value=5.5e-16 Score=167.94 Aligned_cols=118 Identities=29% Similarity=0.470 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+... .||+||+|+.||++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-----------------------~~dlvilD~~l~~~ 62 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL-----------------------RPDLVLLDLMLPGM 62 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH-----------------------CCSEEEEESSCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-----------------------CCCEEEEeCCCCCC
Confidence 5899999999999999999999999999999999999988652 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|+++++.||+. ..+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 63 ~g~~~~~~lr~~------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 63 NGIDVCRVLRAD------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CHHHHHHHHHTT------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHhC------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999974 1589999999999999999999999999999999999999999998764
No 113
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.65 E-value=5.9e-16 Score=166.32 Aligned_cols=118 Identities=25% Similarity=0.458 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..+..+|+..|++|..+.++.+|++.+... .||+||+|+.||++
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-----------------------~~dlvllD~~l~~~ 61 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA-----------------------GADIVLLDLMLPGM 61 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH-----------------------CCSEEEEESSCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc-----------------------CCCEEEEECCCCCC
Confidence 5899999999999999999999999999999999999988652 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|++++++||+. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 62 ~g~~~~~~l~~~------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 62 SGTDVCKQLRAR------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CHHHHHHHHHHH------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHcC------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999974 2589999999998888999999999999999999999999999998764
No 114
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.65 E-value=2.8e-16 Score=156.08 Aligned_cols=110 Identities=20% Similarity=0.391 Sum_probs=93.3
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+.+||||||++..+..++.+|++. |+.+. .+.++.+|++.+... ..||+||+|+.
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~----------------------~~~dlvilD~~ 69 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ----------------------PNVDLILLDIE 69 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC----------------------TTCCEEEECTT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC----------------------CCCCEEEEeCC
Confidence 3568999999999999999999988 88865 899999999998641 26999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEec--cCCHHHHHHHHHcCCCEEEECCCCHHHH
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTA--HAMNADEKKCLGVGMNAYLTKPIDSERM 1100 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa--~~~~~~~~~~l~aG~d~yL~KPi~~~~L 1100 (1120)
||+++|++++++||+.. ..|||++|+ ....+...+|+++|+++||.||++.++|
T Consensus 70 l~~~~g~~~~~~lr~~~------~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 70 MPVMDGMEFLRHAKLKT------RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp SCCCTTCHHHHHHHHHC------CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred CCCCCHHHHHHHHHhcC------CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 99999999999999752 378988887 5566677899999999999999994443
No 115
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.64 E-value=2e-15 Score=153.91 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=104.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC-CE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVG-AT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g-~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+..| +. +..+.++.+|++.+... .||+||+|+.|
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-----------------------~~dlvilD~~l 81 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----------------------KPDVITMDIEM 81 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSSC
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC-----------------------CCCEEEEeCCC
Confidence 4799999999999999999999875 33 45799999999998753 69999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHH--HHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA--DEKKCLGVGMNAYLTKPID---------SERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KPi~---------~~~L~~~I~~l~~~ 1110 (1120)
|+++|++++++||+.. .+|||++|+..+.. ...+++++|+++||.||++ .++|.++|++++..
T Consensus 82 ~~~~g~~l~~~lr~~~------~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 82 PNLNGIEALKLIMKKA------PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp SSSCHHHHHHHHHHHS------CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHhcC------CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 9999999999999752 27999999977654 5679999999999999999 78889999888876
Q ss_pred CC
Q 001222 1111 MP 1112 (1120)
Q Consensus 1111 ~~ 1112 (1120)
..
T Consensus 156 ~~ 157 (164)
T 3t8y_A 156 DP 157 (164)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 116
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.64 E-value=2.2e-15 Score=146.40 Aligned_cols=122 Identities=24% Similarity=0.369 Sum_probs=107.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.++||||||++..+..++..|+..|+.|..+.++.+|++.+.. ...||+||+|+.||+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~d~~l~~ 62 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS----------------------GAAIDGVVTDIRFCQ 62 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------------------TCCCCEEEEESCCSS
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc----------------------CCCCCEEEEeeeCCC
Confidence 5799999999999999999999999999999999999999863 126999999999998
Q ss_pred -CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001222 1044 -MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1114 (1120)
Q Consensus 1044 -mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1114 (1120)
++|++++++||+.. +++|||++|+....+...+++++| +||.||++.++|..+|++++......
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~~ 127 (132)
T 2rdm_A 63 PPDGWQVARVAREID-----PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREGH 127 (132)
T ss_dssp SSCHHHHHHHHHHHC-----TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCHHHHHHHHHhcC-----CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999853 369999999999888888887776 89999999999999999998776443
No 117
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.64 E-value=6.5e-16 Score=177.62 Aligned_cols=118 Identities=27% Similarity=0.410 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILE-KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~-~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.+||||||++..+..++.+|+ ..|+.|..+.||.+|++.+... .||+||+|+.||+
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~-----------------------~~dlvl~D~~mp~ 75 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI-----------------------KPTVILQDLVMPG 75 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH-----------------------CCSEEEEESBCSS
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC-----------------------CCCEEEEeCCCCC
Confidence 579999999999999999996 4699999999999999998652 6999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
|||++++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|..+.
T Consensus 76 ~~G~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 76 VDGLTLLAAYRGNPA---TRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp SBHHHHHHHHTTSTT---TTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcc---cCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 999999999997532 24699999999999999999999999999999999999999887653
No 118
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.64 E-value=2.3e-15 Score=148.82 Aligned_cols=117 Identities=21% Similarity=0.367 Sum_probs=103.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..+..+|+.. |+.+ ..+.++.+|++.+.. ..||+||+|+.|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlvi~d~~l 65 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-----------------------NKVDAIFLDINI 65 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-----------------------CCCSEEEECSSC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEecCC
Confidence 479999999999999999999986 8884 589999999999865 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
|+++|++++++||+.. +.+|||++|+.. +...+++++|+++||.||++.++|..+|.++++.
T Consensus 66 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 66 PSLDGVLLAQNISQFA-----HKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp SSSCHHHHHHHHTTST-----TCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHccC-----CCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999742 357899999874 3677899999999999999999999999988754
No 119
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.64 E-value=1.4e-15 Score=143.94 Aligned_cols=116 Identities=24% Similarity=0.332 Sum_probs=105.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||.+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~-----------------------~~dlii~d~~~~~~ 58 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL-----------------------QPIVILMAWPPPDQ 58 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-----------------------CCSEEEEECSTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc-----------------------CCCEEEEecCCCCC
Confidence 5899999999999999999999999999999999999998753 69999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+|+++++.||+... .+++|||++|+..... +++++|+++|+.||++.++|..+|.++++
T Consensus 59 ~~~~~~~~l~~~~~---~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 59 SCLLLLQHLREHQA---DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp THHHHHHHHHHTCC---CSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhccc---cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 99999999998632 2469999999987765 89999999999999999999999987764
No 120
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.63 E-value=4.6e-16 Score=186.22 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=95.5
Q ss_pred EEeC-HHHHHHHHHHHHHHHhhccCCCc----EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCC
Q 001222 548 VRGD-PGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN 622 (1120)
Q Consensus 548 v~gD-~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1120)
+.+| +.+|.|||.|||+||++|+..|+ |.|.+... ..+
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~-------------------------------------~~~ 66 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLI-------------------------------------DDA 66 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEE-------------------------------------ETT
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEEC-------------------------------------CCc
Confidence 4455 59999999999999999998764 66554321 001
Q ss_pred ceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC-CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEec
Q 001222 623 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLL 699 (1120)
Q Consensus 623 ~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~-~~~~GtGLGLaIvk~LVe~mGG~-I~v~S~~g~GT-~f~~~lpl 699 (1120)
...+.|+|.|+|+||+++.++++|++|++.+.... +..+|+||||++|+.++++|||+ |++.|..+.|+ +|+|.||+
T Consensus 67 ~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl 146 (530)
T 2zbk_B 67 RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI 146 (530)
T ss_dssp TTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEe
Confidence 23578999999999999999999999988765432 45689999999999999999999 99999999887 88888887
Q ss_pred CC
Q 001222 700 GA 701 (1120)
Q Consensus 700 ~~ 701 (1120)
..
T Consensus 147 ~~ 148 (530)
T 2zbk_B 147 DI 148 (530)
T ss_dssp ET
T ss_pred cc
Confidence 64
No 121
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.63 E-value=7.2e-16 Score=182.60 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=96.1
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCCCc----EEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCc
Q 001222 548 VRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 623 (1120)
Q Consensus 548 v~gD~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1120)
+.+|+.+|.|||.|||+||++|+..|+ |.|.+... ..+.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~-------------------------------------~~~~ 68 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLI-------------------------------------DDAR 68 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE-------------------------------------ETTT
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC-------------------------------------CCcC
Confidence 457889999999999999999998764 66554221 0012
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC-CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEecC
Q 001222 624 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLLG 700 (1120)
Q Consensus 624 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~-~~~~GtGLGLaIvk~LVe~mGG~-I~v~S~~g~GT-~f~~~lpl~ 700 (1120)
..+.|+|.|+|+||++++++++|++|++.+.... +..+|+||||++|+.++++|||+ |++.|..+.|+ .|+|.||+.
T Consensus 69 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 69 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred cEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 3578999999999999999999999988765432 45689999999999999999999 99999999987 899998886
Q ss_pred C
Q 001222 701 A 701 (1120)
Q Consensus 701 ~ 701 (1120)
.
T Consensus 149 ~ 149 (471)
T 1mu5_A 149 I 149 (471)
T ss_dssp T
T ss_pred c
Confidence 4
No 122
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.63 E-value=1.1e-15 Score=153.35 Aligned_cols=121 Identities=17% Similarity=0.302 Sum_probs=99.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKV-GA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~-g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
.++||||||++..+..++.+|+.. |+ .|..+.++.+|++.+.. ...||+||+|+.|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~d~~l 60 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA----------------------DNTVDLILLDVNL 60 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT----------------------TCCCSEEEECC--
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc----------------------cCCCCEEEEeCCC
Confidence 368999999999999999999988 88 68899999999999863 1379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 61 ~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 61 PDAEAIDGLVRLKRFD-----PSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp ----CHHHHHHHHHHC-----TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999863 3689999999998889999999999999999999999999999998764
No 123
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.63 E-value=1.4e-15 Score=162.31 Aligned_cols=116 Identities=21% Similarity=0.372 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------------------~~~dlvllD~~lp~~ 56 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------------------EAFHVVVLDVMLPDY 56 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------------------SCCSEEEEESBCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999 999999999998855 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
||++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 57 ~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 57 SGYEICRMIKETR-----PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999753 3689999999999999999999999999999999999999999998764
No 124
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.62 E-value=2.7e-16 Score=168.91 Aligned_cols=120 Identities=9% Similarity=0.050 Sum_probs=104.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-cCCEEEE-ECCHHHHHHH-HHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEK-VGATVSV-VPDGLQAVEA-LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~-~g~~v~~-a~ng~eAl~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.++||||||++..+..++.+|+. .|+.+.. +.++.+++.. +.. ..||+||+|++
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------~~~dlvllD~~ 63 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES-----------------------RSIQMLVIDYS 63 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG-----------------------GGCCEEEEEGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc-----------------------cCCCEEEEeCC
Confidence 46999999999999999999994 6888865 4667766653 332 36999999999
Q ss_pred CCCCCHHHHHHHHHh-cccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1041 MPKMDGYEATIEIRK-SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~-~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
||+|||++++++||+ .. +++|||++|++.+.+....++++|+++||.||++.++|..+|++++++.
T Consensus 64 mp~~~G~~~~~~lr~~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 64 RISDDVLTDYSSFKHISC-----PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp GCCHHHHHHHHHHHHHHC-----TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhhC-----CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 999999999999997 32 4699999999999889999999999999999999999999999988764
No 125
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.62 E-value=3.2e-16 Score=168.56 Aligned_cols=118 Identities=14% Similarity=0.248 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g-~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..+..++.+|+..| +.+ ..+.++.+|++.+... .||+||+|+.||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~-----------------------~~dlvllD~~lp 58 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA-----------------------RPDVAVLDVRLP 58 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSEET
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc-----------------------CCCEEEEeCCCC
Confidence 589999999999999999999887 885 4799999999998653 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+|||++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 59 ~~~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 59 DGNGIELCRDLLSRM-----PDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp TEEHHHHHHHHHHHC-----TTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 999999999999752 469999999999999999999999999999999999999999988765
No 126
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.62 E-value=1.1e-15 Score=150.30 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=102.4
Q ss_pred ccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 962 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 962 ~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+.+||||||++..+..++.+|+..||.|..+.++.+|++.+... ..||+||+|+.|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~----------------------~~~dlvilD~~l 70 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL----------------------STCDLLIVSDQL 70 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG----------------------GSCSEEEEETTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC----------------------CCCCEEEEeCCC
Confidence 3467999999999999999999999999999999999999987530 269999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEe-ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALT-AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalT-a~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|+++|++++++||+. .+++|||++| +..+.+. .+++ +++||.||++.++|..+|.+++++.
T Consensus 71 ~~~~g~~~~~~l~~~-----~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 71 VDLSIFSLLDIVKEQ-----TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp TTSCHHHHHHHHTTS-----SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCCHHHHHHHHHhh-----CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 999999999999973 2469999999 8877666 6666 9999999999999999999987654
No 127
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.61 E-value=1.1e-15 Score=179.07 Aligned_cols=120 Identities=27% Similarity=0.378 Sum_probs=106.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~-~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
++||||||++..+..++.+|++ .|+.|..|.||.+|++.+... ..||+||+|++||+
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~----------------------~~~DlvllDi~mP~ 61 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC----------------------GHVDIAICDLQMSG 61 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH----------------------SCEEEEEECSSCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC----------------------CCCCEEEEeCCCCC
Confidence 6899999999999999999998 578999999999999998641 26999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMN-----ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
|||++++++||+.. +.+|||++|+.... ....+|+++|+++||.||++.++|..+|.++++..
T Consensus 62 ~dG~ell~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 62 MDGLAFLRHASLSG-----KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp SCHHHHHHHHHHHT-----CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcC-----CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 99999999999753 34778888887766 66778999999999999999999999999988654
No 128
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.59 E-value=1.6e-15 Score=159.07 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=103.0
Q ss_pred ccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 962 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 962 ~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
..+++||||||++..+..+..+|+..||.|..+.++.+|++ ..||+||+|+.|
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~---------------------------~~~dlvl~D~~m 62 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFD---------------------------VPVDVVFTSIFQ 62 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCS---------------------------SCCSEEEEECCS
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhCC---------------------------CCCCEEEEeCCC
Confidence 44679999999999999999999999999999998877551 269999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
|+|||. +++.+|+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|..++.
T Consensus 63 p~~~g~-l~~~~~~~~-----~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 63 NRHHDE-IAALLAAGT-----PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp STHHHH-HHHHHHHSC-----TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CccchH-HHHHHhccC-----CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 999999 888888642 36899999999999999999999999999999999999999987764
No 129
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.59 E-value=3.5e-15 Score=148.99 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=82.2
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC----CcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceE
Q 001222 550 GDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 625 (1120)
Q Consensus 550 gD~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1120)
.|...+.+++.||+.||+||+.. |.|.|.+... ...
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~----------------------------------------~~~ 74 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE----------------------------------------DGV 74 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE----------------------------------------TTE
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe----------------------------------------CCE
Confidence 58889999999999999999965 6677664321 124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001222 626 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 702 (1120)
Q Consensus 626 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~ 702 (1120)
+.|+|.|+|+||+ .++++|++|++.+. ...|+||||+||+++++ ++.++|.+++||+|++++|+..+
T Consensus 75 ~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 75 VHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp EEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred EEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 7899999999999 89999999997653 23589999999999998 99999999999999999998653
No 130
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.58 E-value=1.2e-16 Score=153.29 Aligned_cols=119 Identities=25% Similarity=0.382 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
.+|||+||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~~ 60 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-----------------------KTPDVLLSDIRMPGM 60 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS-----------------------CCCSCEEECSCSSHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeeecCCC
Confidence 479999999999999999999999999999999999998742 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+|++++++||+.. +++|||++|++.+.+...+++++|+++|+.||++.++|..+|.+++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 61 DGLALLKQIKQRH-----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp HHCSTHHHHHHHC-----TTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999752 3689999999988888889999999999999999999999999988653
No 131
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.58 E-value=1e-14 Score=155.96 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=106.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1044 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m 1044 (1120)
++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+|| ||+|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi----lp~~ 53 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------------------RNYDLVM----VSDK 53 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT-----------------------SCCSEEE----ECCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc-----------------------CCCCEEE----eCCC
Confidence 479999999999999999999999999999999999998853 4799999 9999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1111 (1120)
||+++++.||+. + .++|||++|++.+.+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 54 ~g~~~~~~lr~~-~----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 54 NALSFVSRIKEK-H----SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp THHHHHHHHHHH-C----TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHhC-C----CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 999999999986 2 258999999999999999999999999999999 9999999999998765
No 132
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.55 E-value=5.2e-15 Score=162.98 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=86.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~-~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~ 1043 (1120)
.+||||||++..+..+...|+. .|+.+. +.++.+++..+. ...||+||+|++||+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-----------------------~~~~dlvllD~~mP~ 60 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-----------------------GDEYVVALVDLTLPD 60 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-----------------------TTTEEEEEEESCBTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-----------------------cCCCcEEEEeCCCCC
Confidence 4899999999999999999976 477775 455556554432 247999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHH
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1098 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~ 1098 (1120)
|||++++++||+. .+|||++|++.+.+++.+|+++||++||+||+...
T Consensus 61 ~~G~~~~~~lr~~-------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 61 APSGEAVKVLLER-------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp BTTSHHHHHHHHT-------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred CCHHHHHHHHHhC-------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 9999999999962 48999999999999999999999999999997543
No 133
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.53 E-value=5.5e-14 Score=161.34 Aligned_cols=117 Identities=21% Similarity=0.430 Sum_probs=103.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001222 965 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1042 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP 1042 (1120)
++||||||++..+..++.+|+.. |++ +..+.|+.+|++.+... .||+|++|+.||
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~-----------------------~pDlVllDi~mp 60 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF-----------------------NPDVLTLDVEMP 60 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEECCCS
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc-----------------------CCCEEEEECCCC
Confidence 68999999999999999999986 898 56999999999998753 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCH--HHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHHhhc
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMN--ADEKKCLGVGMNAYLTKPIDS---------ERMVSTILRLTKN 1110 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~--~~~~~~l~aG~d~yL~KPi~~---------~~L~~~I~~l~~~ 1110 (1120)
+|||++++++||+.. .+|||++|+.... +...+++++|+++||.||++. ++|..+|+.+.+.
T Consensus 61 ~~dGlell~~l~~~~------p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 61 RMDGLDFLEKLMRLR------PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp SSCHHHHHHHHHHSS------CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhcC------CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999742 3899999998775 447899999999999999983 8898998887654
No 134
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.52 E-value=6.8e-12 Score=149.23 Aligned_cols=267 Identities=14% Similarity=0.161 Sum_probs=178.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.++++++....+..+...+...|..+..+.........+.. .+.++
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~----------------------------------~~~dl 48 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR----------------------------------DLPDI 48 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc----------------------------------CCCCE
Confidence 46677777888888888888888776666554443332211 13468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGM 876 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~ 876 (1120)
+++|+.++++++....+.++... ........+...........+..+.|..-++.||+....+...+..+........
T Consensus 49 vllD~~mp~~~G~~~~~~l~~~~--~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 126 (459)
T 1w25_A 49 ILLDVMMPGMDGFTVCRKLKDDP--TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVID 126 (459)
T ss_dssp EEEESCCSSSCHHHHHHHHHHST--TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHhcCc--ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhh
Confidence 89999999998754433333211 1111223333333344445566778999999999999999888777654211000
Q ss_pred cccccccCCCCCCccccccccccccchhhhccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCc
Q 001222 877 QNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSS 956 (1120)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 956 (1120)
... .... . . .........
T Consensus 127 ~~~--------------------------~~~~---~------------------------~-----~~~~~~~~~---- 144 (459)
T 1w25_A 127 ELR--------------------------QREA---S------------------------G-----RRMGVIAGA---- 144 (459)
T ss_dssp HHH--------------------------HHHT---T------------------------T-----TSSTTTTCC----
T ss_pred Hhh--------------------------hhcc---c------------------------c-----cchhhhhhh----
Confidence 000 0000 0 0 000000000
Q ss_pred chhhcccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 957 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 957 ~~~~~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
.......+.+|++|||+..++..+...|.. .+.+....++.+++.. .. ..||+|+
T Consensus 145 ~~~~~~~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~~-----------------------~~~dlil 199 (459)
T 1w25_A 145 AARLDGLGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-AG-----------------------GPVDLVI 199 (459)
T ss_dssp CCCCSSCSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-HH-----------------------SSCSEEE
T ss_pred hhhhcCCCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-cc-----------------------CCCCEEE
Confidence 000011245899999999999888888865 4678888898888632 21 3699999
Q ss_pred EeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1037 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1037 mD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
||++||.|||+++++.||+... ...+||+++|+..+.++..+|+++||++|+.||++.+++...+..+++
T Consensus 200 ~D~~mp~~dG~~~~~~ir~~~~---~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 200 VNAAAKNFDGLRFTAALRSEER---TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp EETTCSSSCHHHHHHHHHTSGG---GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHhCcc---ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998643 257999999999999999999999999999999999999888876653
No 135
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.51 E-value=1.6e-14 Score=181.69 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=108.2
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 965 LRILLAEDTP-LI-------QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 965 ~~ILIVdD~~-~n-------~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
++||||||++ .. ++.++..|++.||+|..|.||++|++.+.. ...||+||
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~----------------------~~~~d~vi 58 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------------------NEAIDCLM 58 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT----------------------TCCCSEEE
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc----------------------CCCCcEEE
Confidence 4899999999 88 999999999999999999999999999853 12599999
Q ss_pred EeCCCCC----CCHHHHHHHHHhcccccCCCCcceEEEeccCC-HHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHhhc
Q 001222 1037 MDCQMPK----MDGYEATIEIRKSESEHGARNIPIVALTAHAM-NADEKKCLGVGMNAYLTKPIDSER-MVSTILRLTKN 1110 (1120)
Q Consensus 1037 mD~~MP~----mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~-~~~~~~~l~aG~d~yL~KPi~~~~-L~~~I~~l~~~ 1110 (1120)
+|++||+ |||++++++||+.. ..+|||++|+... .+++...+..|+|||++||++..+ |..+|++++++
T Consensus 59 lDi~lp~~~~~~~G~~ll~~iR~~~-----~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 59 FSYQMEHPDEHQNVRQLIGKLHERQ-----QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp EECCCCSHHHHHHHHHHHHHHHHHS-----TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred EeCCCCcccccccHHHHHHHHHHhC-----CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999 99999999999853 3599999999988 889999999999999999999999 88999888766
No 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.34 E-value=1.3e-12 Score=158.40 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=86.0
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCC-C---cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCc
Q 001222 548 VRGDPGRVFQIFSNLINNSIKFTSS-G---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 623 (1120)
Q Consensus 548 v~gD~~rL~QIL~NLL~NAIKfT~~-G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1120)
+.+|+.+|.|++.|||+||++|+.. | .|.|.+.. ++.
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~---------------------------------------~~~ 71 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVER---------------------------------------TGP 71 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEE---------------------------------------ETT
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE---------------------------------------CCC
Confidence 5689999999999999999999985 4 45543211 111
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCC--CCCCCCCccchHHHHHHHHHHcCCE-EEEEEeCCC---ceEEEEEE
Q 001222 624 LALCFEVDDTGCGIDQSKWETVFESFEQGDPS--TTRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSP---GTLMQLYL 697 (1120)
Q Consensus 624 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s--~~~~~~GtGLGLaIvk~LVe~mGG~-I~v~S~~g~---GT~f~~~l 697 (1120)
..+.|+|.|+|+|||++.++++|++|+.++.. .....+|+||||++|+.+++.|||+ |.++|..+. |++|+|.+
T Consensus 72 ~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~l 151 (621)
T 2q2e_B 72 DYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMI 151 (621)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCC
T ss_pred cEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEec
Confidence 24779999999999999999999877544321 1123479999999999999999999 899998864 55555555
Q ss_pred ecC
Q 001222 698 LLG 700 (1120)
Q Consensus 698 pl~ 700 (1120)
|..
T Consensus 152 p~~ 154 (621)
T 2q2e_B 152 NTS 154 (621)
T ss_dssp CSS
T ss_pred chh
Confidence 443
No 137
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.91 E-value=7.6e-10 Score=118.64 Aligned_cols=93 Identities=24% Similarity=0.407 Sum_probs=77.5
Q ss_pred CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceE
Q 001222 989 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1068 (1120)
Q Consensus 989 ~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipII 1068 (1120)
+.|..+.|+.+|++.+... .||+||+|++||+|||++++++||+..+ ..+|+
T Consensus 6 ~~v~~~~~~~~a~~~~~~~-----------------------~~dlvl~D~~~p~~~g~~~~~~l~~~~~-----~~~i~ 57 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL-----------------------KPDIVTMDITMPEMNGIDAIKEIMKIDP-----NAKII 57 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH-----------------------CCSCEEEECCSTTSSHHHHHHHHHHHSS-----SCCEE
T ss_pred EEEEECCCHHHHHHHHHhc-----------------------CCCEEEEeCCCCCCCHHHHHHHHHHhCC-----CCCEE
Confidence 4556689999999998753 6999999999999999999999998643 34555
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHHhh
Q 001222 1069 ALTAHAMNADEKKCLGVGMNAYLTKP--IDSERMVSTILRLTK 1109 (1120)
Q Consensus 1069 alTa~~~~~~~~~~l~aG~d~yL~KP--i~~~~L~~~I~~l~~ 1109 (1120)
++++....+...+++++|+++|+.|| ++..+|...+.+.+.
T Consensus 58 vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 58 VCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp EECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 66666668889999999999999999 788889888887764
No 138
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.33 E-value=3.1e-07 Score=106.36 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=65.3
Q ss_pred EeCHHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEE
Q 001222 549 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 628 (1120)
Q Consensus 549 ~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 628 (1120)
.++...+++++.|+|+||+++ ..+.|.|.+. .++ .|
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~---------------------------------------~~~----~i 66 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLN---------------------------------------EDG----SL 66 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC---------------------------------------TTS----CE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEE---------------------------------------cCC----EE
Confidence 578899999999999999995 3456666541 111 48
Q ss_pred EEEeCCCCCChhhHhh--------hhcccccCCC----CCCCCCCCccchHHHHHHHHHHcC
Q 001222 629 EVDDTGCGIDQSKWET--------VFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMG 678 (1120)
Q Consensus 629 ~V~DtG~GI~~e~l~~--------IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~mG 678 (1120)
+|.|+|+|||++.+++ +|.+|+.+.. ......|+.|+||++|+.+++.+.
T Consensus 67 ~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 67 TVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp EEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred EEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 9999999999999887 9998876532 111234679999999999997653
No 139
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.24 E-value=2.9e-06 Score=96.43 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001222 554 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 633 (1120)
Q Consensus 554 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 633 (1120)
++.+++.|||+||+++.. ..|.|.+.. ++ ...|+|.|+
T Consensus 24 ~~~~~v~ELi~NaidA~a-~~I~I~i~~---------------------------------------~~--~~~i~V~Dn 61 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA-TRIDIDIER---------------------------------------GG--AKLIRIRDN 61 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCC-CeEEEEEEe---------------------------------------CC--ceEEEEEEc
Confidence 578999999999999974 456655421 00 125899999
Q ss_pred CCCCChhhHhhhhcccccCCCCC------CCCCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001222 634 GCGIDQSKWETVFESFEQGDPST------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 689 (1120)
Q Consensus 634 G~GI~~e~l~~IFe~F~q~~~s~------~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~ 689 (1120)
|+||++++++.+|++|++.+... ....|+.|+||+.+..+ +++.|.|....
T Consensus 62 G~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 62 GCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp SCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred CCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 99999999999999998764211 12356799999987554 36888887643
No 140
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=98.17 E-value=8.1e-06 Score=86.30 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=63.0
Q ss_pred CCCcceeeeee-ecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001222 214 PDGVASWHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 214 ~~~~~~w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 292 (1120)
..|++.|+..+ +..++.+.++++.||++. +|+++||+++++.+..+.++++.+..+ |.+|++|.+|.+++++..
T Consensus 106 ~~~~~~is~~~~~~~~g~~~i~ia~pi~~~---~g~~~Gvl~~~i~l~~l~~~~~~~~~g--g~~~l~d~~G~ii~~~~~ 180 (217)
T 4dah_A 106 ETKKTVISDSYSSRITGQPIFTICVPVLDS---KRNVTDYLVAAIQIDYLKNLINLLSPD--VYIEVVNQDGKMIFASGQ 180 (217)
T ss_dssp HHCSCEECCCEECTTTCSEEEEEEEEEECT---TSCEEEEEEEEEEHHHHHHHHHHHCTT--SCEEEEETTSCEEEEESC
T ss_pred hcCCcEEeceEEcCCCCCEEEEEEEEEECC---CCCEEEEEEEEEcHHHHHHHHHhcCCC--cEEEEEcCCCCEEEeCCC
Confidence 44667888655 345688999999999996 799999999999999999999988654 899999999999998775
No 141
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.10 E-value=5.6e-06 Score=95.00 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001222 554 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 633 (1120)
Q Consensus 554 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 633 (1120)
++.+++.|||+||+++.. +.|.|.+.. ++ ...|+|.|+
T Consensus 34 ~~~~vl~eLv~NAiDA~a-~~I~I~i~~---------------------------------------~~--~~~I~V~Dn 71 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA-TNIDLKLKD---------------------------------------YG--VDLIEVSDN 71 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEe---------------------------------------CC--cEEEEEEEC
Confidence 568999999999999863 456655421 00 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC-----CCCCCc-cchHHHHHHHHHHcCCEEEEEEeCC
Q 001222 634 GCGIDQSKWETVFESFEQGDPSTT-----RKHGGT-GLGLSIVRTLVNKMGGEIKVVKKNS 688 (1120)
Q Consensus 634 G~GI~~e~l~~IFe~F~q~~~s~~-----~~~~Gt-GLGLaIvk~LVe~mGG~I~v~S~~g 688 (1120)
|+||++++++++|++|++.+.... ....|. |+||+.+..+ . ++.|.|...
T Consensus 72 G~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~ 127 (365)
T 1h7s_A 72 GCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHA 127 (365)
T ss_dssp SCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECT
T ss_pred CCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccC
Confidence 999999999999999997643211 011244 9999877665 2 788888763
No 142
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.04 E-value=1.1e-05 Score=91.39 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001222 554 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 633 (1120)
Q Consensus 554 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 633 (1120)
++.+++.|||.||+++. .+.|.|.+.. ++ ...|+|.|+
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~~---------------------------------------~~--~~~I~V~Dn 65 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVKE---------------------------------------GG--LKLIQIQDN 65 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEEe---------------------------------------CC--EEEEEEEEC
Confidence 56799999999999994 3456655421 01 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001222 634 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 688 (1120)
Q Consensus 634 G~GI~~e~l~~IFe~F~q~~~s~~------~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g 688 (1120)
|+|||+++++++|++|+..+.... ...|--|.||+-+..+. ++.|.|...
T Consensus 66 G~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~ 121 (348)
T 3na3_A 66 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTA 121 (348)
T ss_dssp SCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECT
T ss_pred CcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEEC
Confidence 999999999999999997654321 12244578886655443 688888764
No 143
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.00 E-value=6e-06 Score=96.32 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHHHhhcc----CCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001222 551 DPGRVFQIFSNLINNSIKFT----SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 626 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT----~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 626 (1120)
+...+..++.+|+.||++|. +.|.|.|++... ....+
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~---------------------------------------~~~~l 334 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALA---------------------------------------GDGNV 334 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC---------------------------------------TTSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc---------------------------------------CCCEE
Confidence 34678999999999999998 367787765321 01248
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 701 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~~lpl~~ 701 (1120)
+++|.|+|+|+|+. + ...+.|+||.|++++++.++ +.+. +.|+++++.+++..
T Consensus 335 ~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~~----~~~~-~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 335 RASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEAR----IMHG-AGGTTATLTHRLSR 387 (399)
T ss_dssp EEEEEESCBC-----------------------------CHHHHHTTSSEEE----EEEE-TTEEEEEEEEECEE
T ss_pred EEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhee----eEEC-CCcEEEEEEEEcCC
Confidence 89999999999876 1 12467999999999997554 5444 67999999998854
No 144
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.99 E-value=1.5e-05 Score=74.47 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001222 434 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 497 (1120)
Q Consensus 434 ~~~~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdl 497 (1120)
..+.+.+|++++||||||||++|.++++.+.++ ..+....|..++.+|..+++++|+|
T Consensus 56 ~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~------~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 56 LADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567899999999999999999999987421 2334578999999999999999997
No 145
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=97.85 E-value=4.1e-05 Score=82.75 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=65.0
Q ss_pred CCcceeeeeee-cccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001222 215 DGVASWHVAVS-KFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 215 ~~~~~w~~~~~-~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 292 (1120)
.+++.|+..+. ..++.++++++.||++. +|+++||+++.+.+..+.++++.+..+.+|.+|++|.+|.+++++.+
T Consensus 109 ~~~~~is~p~~~~~~g~~~i~~~~pi~~~---~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~p~ 184 (254)
T 3lif_A 109 DHTLLITGPIQSRTSGVWVFVVSRRLETT---DGKFFGVVVATIESEYFSTFYKTFDLGPGGSISLLHSDGRLLIQWPS 184 (254)
T ss_dssp CCCCEEEEEEECTTTCCEEEEEEEEEECT---TCCEEEEEEEEECHHHHHHHHTTSCCCTTCEEEEEETTSBEEEEETT
T ss_pred CCCeEECCceecCCCCcEEEEEEeeeeCC---CCCEeEEEEEEECHHHHHHHHHhcCcCCCcEEEEEeCCCcEEEECCC
Confidence 46678886654 45688999999999996 78999999999999999999988888889999999999999998544
No 146
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=97.84 E-value=2.2e-05 Score=86.74 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=64.2
Q ss_pred CCCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001222 214 PDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 214 ~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 292 (1120)
..+++.|+..+.. ++.++++++.||++ +|+++||+++++.+..+.++++.+..+.+|.+|++|.+|.+++++..
T Consensus 132 ~~~~~~~s~p~~~-~~~~~i~~~~pi~~----~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~~ 205 (290)
T 3lib_A 132 ATEKDVLTEPYFY-EGVFMVSYVSPIMK----EGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSGVILSHPTH 205 (290)
T ss_dssp HHCSCEECCCEEE-TTEEEEEEEEEEEE----TTEEEEEEEEEEEHHHHHHHHHHCCBTTTBCEEEECTTCBBCCCSSC
T ss_pred HcCCCEEEcCEEe-CCeEEEEEEEEEEE----CCEEEEEEEEEEeHHHHHHHHHhCCcCCceEEEEEeCCCeEEEcCCc
Confidence 4467788877654 68899999999996 68899999999999999999998888889999999999999987653
No 147
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=97.77 E-value=2.4e-05 Score=86.43 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001222 214 PDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 214 ~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 292 (1120)
..+++.|+..+.. ++.++++++.||++ +|+++||+++++.+..+.++++.+..+.+|.+|++|.+|.+++++..
T Consensus 133 ~~~~~~~s~p~~~-~~~~~i~~~~pi~~----~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~~ 206 (291)
T 3li9_A 133 TTGKDTLTEPYFY-EGIFMVSYDSPIFK----NGEFAGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTGIFLSHPTQ 206 (291)
T ss_dssp HHCSCEECCCEEE-TTEEEEEEEEEEEE----TTEEEEEEEEEEECHHHHHHHTTCCBTTTBEEEEECTTCBBSCCSSC
T ss_pred HhCCCEEEccEEe-CCEEEEEEEEEEEE----CCEEEEEEEEEeeHHHHHHHHHhCCcCCCeEEEEEeCCCeEEEcCCh
Confidence 4467789877654 68899999999996 68899999999999999999988887889999999999999987653
No 148
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=97.75 E-value=8.8e-05 Score=80.81 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCCCcceeeeeeecc-cC-cccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEec
Q 001222 213 VPDGVASWHVAVSKF-TN-SPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATS 290 (1120)
Q Consensus 213 ~~~~~~~w~~~~~~~-~~-~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s 290 (1120)
...+++.|+..+... ++ .++++++.||++ +|+++||+++++.+..+.+++. + .+|.+|++|.+|.+++++
T Consensus 125 ~~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~----~g~~~Gv~~~~i~l~~l~~~~~-~---~~g~~~l~d~~G~ii~~~ 196 (274)
T 3lic_A 125 INQVGGYWSKAYFDEGAGNVLMITYAVPFGV----QPDYFGVTTVDLALDRLPEQLG-I---APSRLVVLDDQGRLIFHS 196 (274)
T ss_dssp TTTSSCEECCCEECTTTTCSEEEEEEEEESC----TTCCCEEEEEEEEGGGHHHHHT-S---CGGGEEEECTTSCEEECS
T ss_pred HhcCCCEEEeeEEcCCCCceEEEEEEEEEcc----CCEEEEEEEEEEEHHHHHHHhc-c---CCceEEEECCCCCEEEeC
Confidence 355677898766443 34 589999999997 5789999999999999999988 5 778999999999999876
Q ss_pred CC
Q 001222 291 TN 292 (1120)
Q Consensus 291 ~~ 292 (1120)
..
T Consensus 197 ~~ 198 (274)
T 3lic_A 197 DK 198 (274)
T ss_dssp SH
T ss_pred CH
Confidence 53
No 149
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.64 E-value=4.3e-05 Score=87.38 Aligned_cols=88 Identities=23% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001222 554 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 633 (1120)
Q Consensus 554 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 633 (1120)
++.+++.|||.||+++. ...|.|.+. .++ ...|+|.|+
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~---------------------------------------~~~--~~~i~V~Dn 62 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK---------------------------------------DYG--LESIECSDN 62 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE---------------------------------------TTT--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE---------------------------------------eCC--EEEEEEEEC
Confidence 56799999999999985 345665431 011 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001222 634 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 688 (1120)
Q Consensus 634 G~GI~~e~l~~IFe~F~q~~~s~~------~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g 688 (1120)
|+||++++++.+|++|+..+.... ...|=.|-||+-+..+ +++.|.|...
T Consensus 63 G~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~ 118 (367)
T 3h4l_A 63 GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTS 118 (367)
T ss_dssp SCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESS
T ss_pred CCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEEC
Confidence 999999999999999996543221 0112236777655444 2688888764
No 150
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.63 E-value=0.00026 Score=73.81 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=73.0
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001222 440 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 519 (1120)
Q Consensus 440 ~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlskiesg~~~l~~~~~dL~~li~ 519 (1120)
+.+....||..+=|..|.|++++= -.++..+++..+........ .++++.. ..+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~-----~ydea~~yI~~~~~~~q~~~-------~~~~i~~-------------P~la 77 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ-----KYDRVFEMIEEMVIDAKHES-------KLSNLKT-------------PHLA 77 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHH-------HHHTTTC-------------HHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHH-------HHHhCCC-------------HHHH
Confidence 467788999999999999999952 13445556555544443322 1333321 1233
Q ss_pred HHHHHHHHHhhcCCcEE-EEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcc-------CCCcEEEEEeecccCCCCCCC
Q 001222 520 ELVDMFSVQCSNHNVET-VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-------SSGHIIIRGWCENLDTSKNTA 591 (1120)
Q Consensus 520 ~v~~~~~~~a~~k~i~l-~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-------~~G~v~v~~~~~~~~~~~~~~ 591 (1120)
.++-.....|++.++++ .++....++ ..+..+ .||+.||+... ..+.|.|.....
T Consensus 78 ~lLl~K~~~a~e~~i~lev~~~~s~l~----~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~--------- 140 (192)
T 1ixm_A 78 FDFLTFNWKTHYMTLEYEVLGEIKDLS----AYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTD--------- 140 (192)
T ss_dssp HHHHHGGGSCCSSEEEEEEESSCCCCT----TTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECC---------
T ss_pred HHHHHHHHHhccCCeEEEEecCccccC----CCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEe---------
Confidence 33333333444444444 323223222 233333 45554444432 345666654211
Q ss_pred CCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccc
Q 001222 592 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 650 (1120)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~ 650 (1120)
.+...+.|+|.|+|+||+++.+++||++.|
T Consensus 141 -----------------------------~~~~~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 141 -----------------------------HPDRQLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp -----------------------------CSSSSCEEEEEEESCBSCGGGCC-------
T ss_pred -----------------------------cCCCEEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 001247789999999999999999998655
No 151
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.53 E-value=0.00054 Score=72.64 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=58.3
Q ss_pred CccEEEEeC-CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEE------ECCCCHHHHHHH
Q 001222 1031 RFDLILMDC-QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL------TKPIDSERMVST 1103 (1120)
Q Consensus 1031 ~~DlILmD~-~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL------~KPi~~~~L~~~ 1103 (1120)
..+++++++ .++.|+|++ ++.|++.... .++|||++++.++.++..+|+++|||+++ .+|++.+++.+.
T Consensus 144 ~~~vli~~~~~~g~~~g~~-~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~ 219 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYD-TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 219 (237)
T ss_dssp CSEEEEEETTTTTCCSCCC-HHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CCeEEEEecCCCCcccccc-HHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHH
Confidence 457999997 788899976 5555554332 36999999999999999999999999995 899999998876
Q ss_pred HH
Q 001222 1104 IL 1105 (1120)
Q Consensus 1104 I~ 1105 (1120)
+.
T Consensus 220 l~ 221 (237)
T 3cwo_X 220 LK 221 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 152
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=97.43 E-value=0.00033 Score=78.46 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=51.9
Q ss_pred eecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCCC
Q 001222 224 VSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 293 (1120)
Q Consensus 224 ~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 293 (1120)
++..++.|.+.++.||++ +|+++||+++...+..+.+.+. +..+.+|++|.+|.+++++..+
T Consensus 162 ~~~~tg~~~i~~a~PV~~----~G~viGVv~v~i~l~~l~~~~~----~~~g~~~l~D~~G~ii~~~~~~ 223 (305)
T 3e4o_A 162 MGTVSKRPGLYISRRVDG----PGGPLGVIVAKLEFDGVEADWQ----ASGKPAYVTDRRGIVLITSLPS 223 (305)
T ss_dssp ECTTTCCEEEEEEEEEEE----TTEEEEEEEEEECCHHHHHHHH----HHTSCEEEECTTCBEEEESSGG
T ss_pred EecCCCCEEEEEEEEEcc----CCeEEEEEEEEEcHHHHHHHHh----cCCceEEEEcCCCeEEEeCChh
Confidence 455667899999999987 5889999999999988888764 3688999999999999886654
No 153
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=97.31 E-value=6.7e-05 Score=79.42 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCcceeeeeeec-ccCcccccccccccCCCCCC-CcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecC
Q 001222 215 DGVASWHVAVSK-FTNSPLLSAALPVWDPTTSN-KSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATST 291 (1120)
Q Consensus 215 ~~~~~w~~~~~~-~~~~~~~~~~~pv~~~~~~~-~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~ 291 (1120)
.+++.|+..+.. .++.++++++.||++. + |+++||+++...+..+.++++.+..+.+|.+|+.|.+|.+++++.
T Consensus 101 ~~~~~~s~~~~~~~~~~~~i~~~~pi~~~---~~g~~~Gvl~~~i~~~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~ 176 (240)
T 3c8c_A 101 AGKLVITAPYADSASGEILVSVATPVKDS---ATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPK 176 (240)
T ss_dssp HTSCEECCCEECTTTCCEEEEEEEEEECT---TTCCEEEEEEEEECHHHHHHHHTCSCCTTSEEEEEEETTSBEEECSS
T ss_pred cCCcEEeeceEcCCCCeEEEEEEEEEEEC---CCCeEEEEEEEEEEHHHHHHHHHhcccCCceEEEEEcCCCcEEEeCC
Confidence 356678866543 4577999999999984 4 899999999999999998888777777899999999999998764
No 154
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=97.28 E-value=0.0008 Score=72.44 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=55.3
Q ss_pred CCCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001222 214 PDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 292 (1120)
Q Consensus 214 ~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 292 (1120)
..+.+.|+ .++..++.+++.++.||+ . +|+++||+++...+..+.+++. +..|.+|++|.+|.+++++..
T Consensus 112 ~~~~~~~~-~~~~~~g~~~i~~~~pi~-~---~g~~~Gvv~~~i~l~~l~~~~~----~~~g~~~l~d~~G~ii~~~~~ 181 (260)
T 3by9_A 112 AGQKSQYF-ALGSTSGQRGYYYAYPVI-Y---AAEILGVIVVKMDLSAIEQGWQ----NKSSYFVATDDHQVVFMSSQP 181 (260)
T ss_dssp TTSCEEEE-EECTTTCCEEEEEEEEEE-E---TTEEEEEEEEEECSHHHHHTCC----CSSCEEEEECTTCBEEEESSG
T ss_pred hCCCceEE-EEecCCCCEEEEEEEEEc-c---CCeEEEEEEEEEeHHHHHHHHh----cCCCcEEEECCCCeEEEcCCh
Confidence 33445564 444566789999999998 4 7889999999998887777654 578999999999999998654
No 155
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=97.24 E-value=0.00092 Score=74.45 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=48.2
Q ss_pred CcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcCeEEEEECCcceEEEecCCC
Q 001222 229 NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 293 (1120)
Q Consensus 229 ~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 293 (1120)
+.|+++++.||++ +|+++||+++...+..+.+.++ ...+.+|.+|++|.+|.+++++...
T Consensus 148 ~~p~i~~a~pV~~----~g~~~GVlv~~i~l~~l~~~~~-~~~~~~~~~~l~d~~G~~l~~~~~~ 207 (295)
T 3lid_A 148 LSPSLRILMPISV----NDVRQGYLVLNVDIEYLSSLLN-YSPVRDFHIELVKHKGFYIASPDES 207 (295)
T ss_dssp CCEEEEEEEEEEE----TTEEEEEEEEEEEHHHHHHHHS-EETTTTEECEEEETTSBEEECSCGG
T ss_pred CCCEEEEEEEEcc----CCeEEEEEEEEecHHHHHHHHh-hcccCCCcEEEEcCCCCEEecCCcc
Confidence 5789999999974 7889999999987777666653 2345589999999999999987543
No 156
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.17 E-value=0.00067 Score=62.86 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=47.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001222 437 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 499 (1120)
Q Consensus 437 ~Ks~Fla~~SHELRTPL~~I~g~~elL~~~~~l~~~~~~~l~~I~~s~~~L~~LIndiLdlsk 499 (1120)
.+.+|++.+|||||||++.|.+.++.+... ..+....+...+.++..++++++++++
T Consensus 59 ~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 59 DRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 367899999999999999999999977432 134567789999999999999998764
No 157
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.14 E-value=0.00027 Score=75.42 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=36.4
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC----------CCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGD----------PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~----------~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|.|.|||+||+++++...|..+.... .......|..|+|+.-+.. .+-++.|.|..
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~ 140 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKS 140 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEec
Confidence 478999999999999988776654321 0011123457999865533 33456666654
No 158
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.93 E-value=0.0012 Score=71.67 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=74.0
Q ss_pred cccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 961 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 961 ~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+.+.+||||||++.++..++.+|+..|++|..+.+ . . ...||+|++|..
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-~-------~----------------------~~~~~~ii~d~~ 57 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-Q-------E----------------------PTPEDVLITDEV 57 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-C-------C----------------------CCTTCEEEEESS
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-C-------C----------------------CCcCcEEEEcCC
Confidence 356789999999999999999999999999988764 0 0 247999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
||..++.+ .++.++....... .+.+...++.||+...+|...+.+++..
T Consensus 58 ~~~~~~~~-----------------~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 106 (254)
T 2ayx_A 58 VSKKWQGR-----------------AVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYLI 106 (254)
T ss_dssp CSCCCCSS-----------------EEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHTC
T ss_pred Cccccccc-----------------eEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHhhh
Confidence 99864321 2455554322110 1235568999999999999998887743
No 159
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.64 E-value=0.0022 Score=70.03 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC----------CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDP----------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~----------s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|.|.|||+||+++++...|.++..... ......|..|+|+.-|-.+ +-++.|.|..
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~ 182 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKH 182 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEEC
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEec
Confidence 4789999999999999877765542210 0112335679999866554 3567777765
No 160
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.60 E-value=0.003 Score=72.90 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEEEEEE
Q 001222 552 PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVD 631 (1120)
Q Consensus 552 ~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~ 631 (1120)
...++.++.|.|+||+. .....|.|.+. .++ .|+|.
T Consensus 33 ~~lv~ElvdNsiD~a~~-g~a~~I~V~i~---------------------------------------~~g----~I~V~ 68 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA-GHAKRVDVILH---------------------------------------ADQ----SLEVI 68 (390)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCSEEEEEEC---------------------------------------TTS----CEEEE
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEEEe---------------------------------------cCC----EEEEE
Confidence 56788888888888882 22345665431 112 38899
Q ss_pred eCCCCCChhh--------HhhhhcccccCCC---CCCCCCCC-ccchHHHHHHHHH
Q 001222 632 DTGCGIDQSK--------WETVFESFEQGDP---STTRKHGG-TGLGLSIVRTLVN 675 (1120)
Q Consensus 632 DtG~GI~~e~--------l~~IFe~F~q~~~---s~~~~~~G-tGLGLaIvk~LVe 675 (1120)
|+|+|||.+. ++.+|.+|+.+.. ......+| .|.||+.+..+.+
T Consensus 69 DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 69 DDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp ECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred ECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 9999999998 7889998765432 11112344 8999999998875
No 161
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.58 E-value=0.00049 Score=75.26 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC---------------CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDP---------------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~---------------s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|+|.|||+||+++++...|..+.+... ......|..|+|+.-+..++ .++.|.|..
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~ 147 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKH 147 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEe
Confidence 4789999999999998776644321100 00111256899998775543 455555554
No 162
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.44 E-value=0.00074 Score=72.66 Aligned_cols=57 Identities=12% Similarity=0.293 Sum_probs=36.9
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC------------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPS------------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s------------~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|+|.|+|+||+++++...|..+...... .....|..|+||.-+-. .+-++.|.|..
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~ 163 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRA 163 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEec
Confidence 38899999999999999888665432110 01122568999975533 33456776664
No 163
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.74 E-value=0.0075 Score=74.93 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcc
Q 001222 978 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1057 (1120)
Q Consensus 978 ~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~ 1057 (1120)
+.|...|++.||+|..+.++.+|+..++. ...+++|++|++|+ +.+++++||+..
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~----------------------~~~i~avIld~d~~---~~~ll~~Ir~~~ 74 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIEN----------------------NARLCGVIFDWDKY---NLELCEEISKMN 74 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHH----------------------CTTEEEEEEEHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------------------CCCceEEEEecccc---HHHHHHHHHHhC
Confidence 34558899999999999999999999975 24689999999997 789999999863
Q ss_pred cccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHH
Q 001222 1058 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID-SERMVSTILR 1106 (1120)
Q Consensus 1058 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~-~~~L~~~I~~ 1106 (1120)
..+||++++......+.....-.++++|+.+..+ .+.+..+|.+
T Consensus 75 -----~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (715)
T 3n75_A 75 -----ENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQ 119 (715)
T ss_dssp -----TTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHH
T ss_pred -----CCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHH
Confidence 3699999998865444322223578999999874 4444444543
No 164
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=94.97 E-value=0.0075 Score=64.81 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCC-----C----------CCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDPST-----T----------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 688 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~-----~----------~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g 688 (1120)
.|.|.|||+||+++++...|..+....... . ..-|..|+|+.-+-.++ .++.|.|...
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr~~ 152 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 152 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEeCC
Confidence 478999999999999988886654321100 0 01133688886554443 6778877764
No 165
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=94.60 E-value=0.046 Score=62.97 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC---CCCCCCCC-ccchHHHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSK--------WETVFESFEQGDP---STTRKHGG-TGLGLSIVRTLVNK 676 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~--------l~~IFe~F~q~~~---s~~~~~~G-tGLGLaIvk~LVe~ 676 (1120)
.|+|.|+|+|||.+. .+-+|..+..+.. ......+| .|.||+.+..+.+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 488999999999998 4557875543321 11112234 79999999888753
No 166
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.42 E-value=0.65 Score=46.55 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=82.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
..+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~-----------------------~~~diV~ 74 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ-----------------------EDVDVIG 74 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------------------cCCCEEE
Confidence 4589988 888888999999999999999853 456677777754 3799999
Q ss_pred EeCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1037 MDCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1037 mD~~MP~m--dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+-+.|... .--++.+.+|+. +..+++|+ +-+....++...+.+.|+|.+...--+..+..+.+.++++.
T Consensus 75 lS~~~~~~~~~~~~~i~~L~~~----g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 75 VSILNGAHLHLMKRLMAKLREL----GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp EEESSSCHHHHHHHHHHHHHHT----TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEeechhhHHHHHHHHHHHHhc----CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 99887631 123344555553 12356655 45666666666778999998776545556677777666643
No 167
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=94.24 E-value=0.49 Score=45.87 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=82.7
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
+..++++++....|..+...++..|.. +..++........++ ..+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~----------------------------------~~~ 57 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK----------------------------------KGD 57 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH----------------------------------HHC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH----------------------------------hCC
Confidence 346888999999999999999999975 444444333322221 125
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
++++++|+.++++++....+.++...... .....+.+.........+..+.|.+-++.||+....+...+..++
T Consensus 58 ~DlillD~~MP~mdG~el~~~ir~~~~~~--~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 58 FDFVVTDWNMPGMQGIDLLKNIRADEELK--HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTT--TCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhCCCCC--CCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 67899999999999876666555433222 223344555555556667778999999999999999988877654
No 168
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=93.65 E-value=0.69 Score=41.82 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=79.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC-C
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM-P 1042 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M-P 1042 (1120)
+..||+|-.|...-..++.++....|.+++...-. .+..-|+|++...+ |
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-----------------------------~e~~AdlIfCEYlLLP 62 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-----------------------------QELSADLVVCEYSLLP 62 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-----------------------------CCTTEEEEEEEGGGSC
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccC-----------------------------CcccceeEEEeeecCh
Confidence 34799999999999999999988888888865321 22357999998754 3
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001222 1043 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1111 (1120)
Q Consensus 1043 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1111 (1120)
+.|+... -....-+|++=.--+++...+.++.|+. ||..|++.+.|.++|+..+++.
T Consensus 63 --------e~ifS~k---~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 63 --------REIRSPK---SLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp --------TTCCCCT---TCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred --------HHhcCCC---CCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 2333311 1123346666666677888999999999 9999999999999999988764
No 169
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.63 E-value=0.14 Score=61.38 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC------------CCCCCCCCccchHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDP------------STTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~------------s~~~~~~GtGLGLaIvk~LV 674 (1120)
.|+|.|||+||+++++..-|........ .....-|..|+|+.-+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhcc
Confidence 4789999999999998776654322110 01122366799986555553
No 170
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=93.00 E-value=0.18 Score=52.71 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCChhhH--------hhh-hcccccCCC---CCCCCCCCccchHHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKW--------ETV-FESFEQGDP---STTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l--------~~I-Fe~F~q~~~---s~~~~~~GtGLGLaIvk~LVe 675 (1120)
.++|.|+|+|||.++. +.+ +.+....+- ......|=.|.||+.+..+.+
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 3889999999999883 443 444332111 011112235889998887763
No 171
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=92.95 E-value=0.12 Score=56.36 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCChhhHhhhhc----c----cc---cCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVFE----S----FE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe----~----F~---q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|+|.|||+||+++++..-+- . |. +.+......-|-.|+|+.-|-.+ +-++.|.|..
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v----adkV~V~Sk~ 161 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV----ADKVIVYTKN 161 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccc----cCEEEEEEec
Confidence 478999999999999764332 1 11 11011122346789998665332 3446666654
No 172
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.18 Score=61.59 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCChhhHhhhhcc
Q 001222 627 CFEVDDTGCGIDQSKWETVFES 648 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~ 648 (1120)
.|+|.|||+||+++++..-|..
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSS
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999998765543
No 173
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=92.70 E-value=1.2 Score=47.21 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=80.6
Q ss_pred ceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCC
Q 001222 690 GTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNG 769 (1120)
Q Consensus 690 GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 769 (1120)
||+|++.+|+..+.... ....+...+++.++....+..+..++...|..+..+.........+..
T Consensus 1 Gs~~~~~~~~~~~~~~~---~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~------------ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPG---ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE------------ 65 (250)
T ss_dssp ----------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH------------
T ss_pred CCccccccceeeccCCC---CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh------------
Confidence 89999999875432211 112234578888888888999999999888877666554443332211
Q ss_pred CCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCc
Q 001222 770 FDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQN 849 (1120)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1120)
.+.+++++|+.++++++..+.+.++. ...... ..+..............+.|.+
T Consensus 66 ----------------------~~~dlvllD~~lp~~~g~~~~~~lr~---~~~~~~-ii~lt~~~~~~~~~~~~~~Ga~ 119 (250)
T 3r0j_A 66 ----------------------TRPDAVILDVXMPGMDGFGVLRRLRA---DGIDAP-ALFLTARDSLQDKIAGLTLGGD 119 (250)
T ss_dssp ----------------------HCCSEEEEESCCSSSCHHHHHHHHHH---TTCCCC-EEEEECSTTHHHHHHHHTSTTC
T ss_pred ----------------------CCCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCC-EEEEECCCCHHHHHHHHHcCCc
Confidence 23578999999999887544443332 112222 2333333334445566778899
Q ss_pred EEEeccCChhHHHHHHHHHHhc
Q 001222 850 IVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 850 ~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
-++.||+....+...+..+...
T Consensus 120 ~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 120 DYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988887653
No 174
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=91.68 E-value=0.26 Score=56.26 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---cEEEEEeecccCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001222 551 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 627 (1120)
Q Consensus 551 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 627 (1120)
|+..+..++.-||+|||...-.| .|.|.+. .++ .
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~---------------------------------------~~g----~ 63 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG---------------------------------------GDG----S 63 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC---------------------------------------TTS----C
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEe---------------------------------------CCC----E
Confidence 66788999999999999853222 4444321 122 3
Q ss_pred EEEEeCCCCCChhhHhhhhcccccCCCCC-C--CCCCCccchHHHHHHHHH
Q 001222 628 FEVDDTGCGIDQSKWETVFESFEQGDPST-T--RKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l~~IFe~F~q~~~s~-~--~~~~GtGLGLaIvk~LVe 675 (1120)
|+|.|+|.|||. +-+|....-++-.. . ..+.=+| ||+.+..+-+
T Consensus 64 I~V~DnGrGIp~---e~v~~lhagsKf~~~~~~~~y~vsG-Gls~vnalSs 110 (369)
T 3cwv_A 64 IALFCTSRTVTA---ENLVRVATGAGFLGRPPGDGWGWDS-MLVVSLALSS 110 (369)
T ss_dssp EEEEEEESSCCH---HHHHHHHTTTTGGGSSCCCSTTTTS-SHHHHHHTEE
T ss_pred EEEEECCCCcCH---hHeeeeecCCCcCCCcccccccccC-HHHHHHHhhc
Confidence 899999999998 45563332211100 0 1222235 8888777743
No 175
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=91.64 E-value=1.1 Score=48.18 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=67.2
Q ss_pred HHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHHHH
Q 001222 980 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-----~e~~~~ 1052 (1120)
..+.|.+.||.|. ++.|...|-.+.+ -.++.| |..-.|...| +++++.
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~------------------------~G~~aV-mPlg~pIGsG~Gi~~~~lI~~ 181 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE------------------------IGCIAV-MPLAGLIGSGLGICNPYNLRI 181 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH------------------------SCCSEE-EECSSSTTCCCCCSCHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH------------------------hCCCEE-EeCCccCCCCCCcCCHHHHHH
Confidence 4556777899987 5566665555443 257877 7777664333 788899
Q ss_pred HHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001222 1053 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1106 (1120)
Q Consensus 1053 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~ 1106 (1120)
|++. .++|||+=-+-..++|..+|++.|+|+.+. |--++..+..++..
T Consensus 182 I~e~------~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 234 (265)
T 1wv2_A 182 ILEE------AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKH 234 (265)
T ss_dssp HHHH------CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHhc------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 9873 258999866778999999999999999884 43345555554443
No 176
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=91.63 E-value=0.15 Score=61.89 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC------------CCCCCCCCccchHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQGDP------------STTRKHGGTGLGLSIVRTLV 674 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~------------s~~~~~~GtGLGLaIvk~LV 674 (1120)
.|+|.|||+||+++++..-|........ .....-|..|+|++=+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 4789999999999998766544321110 01111245589987666554
No 177
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=91.56 E-value=0.069 Score=57.64 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------cc---cCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001222 627 CFEVDDTGCGIDQSKWETVFES--------FE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 688 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~--------F~---q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g 688 (1120)
.|+|.|||+||+++++..-|.+ |. +.. .....-|-.|+||+-+-.+ .-++.|.|...
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~-~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~~ 175 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLV----AEKVTVITKHN 175 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhccc-CCccccCCCcchHHHhhcc----CCeEEEEEcCC
Confidence 4789999999999998655532 21 111 1122346679999876332 23677776643
No 178
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=91.51 E-value=0.13 Score=54.69 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=37.8
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccC----------CCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001222 627 CFEVDDTGCGIDQSKWETVFESFEQG----------DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 689 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~F~q~----------~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~ 689 (1120)
.|.|.|+|+||+++++...|.+.... +.......|-.|+||+-+-.+ +-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v----ad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhcc----CCEEEEEEecCC
Confidence 47899999999999997666443210 001122345679999866332 337888887643
No 179
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=91.39 E-value=0.14 Score=62.63 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCChhhHhhhhcc
Q 001222 627 CFEVDDTGCGIDQSKWETVFES 648 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~ 648 (1120)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 3789999999999998766643
No 180
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=90.21 E-value=2.8 Score=40.60 Aligned_cols=119 Identities=10% Similarity=0.158 Sum_probs=76.9
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
...+++.+.....+..+...+...|..+. .+.....+...+... ..+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~--------------------------------~~~ 83 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH--------------------------------YPN 83 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------------------------------GGG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc--------------------------------CCC
Confidence 34688888888889999999998888766 555544443332211 113
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
.+++++|..+.+.++..+.+.++ .......+ .+..............+.|...++.||+....+...+..++
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr---~~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIM---EFDKNARV-IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHH---HHCTTCCE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCEEEEeccCCCccHHHHHHHHH---hhCCCCcE-EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 46888999998877644433333 22222333 33333334445556777888999999999999888876643
No 181
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=89.50 E-value=4.4 Score=38.59 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=75.9
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++.+.....+..+..++...|..+..+.........+. ..++
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~ 59 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA----------------------------------EEDY 59 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH----------------------------------HSCC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCCC
Confidence 456788888888888999999888876655544333222211 1345
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
+++++|..++++++..+.+.++.............+..............+.|...++.||+....+...+....
T Consensus 60 dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 60 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 789999999998875554444432211111122333333334445556677889999999999999999887764
No 182
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=89.08 E-value=0.28 Score=52.37 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCChhhHhhhh----c----ccc---cCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001222 627 CFEVDDTGCGIDQSKWETVF----E----SFE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 687 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IF----e----~F~---q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~ 687 (1120)
.|.|.|||+||+++++..-+ . .|. +.+. ....-|-.|+|+.-|-.+. -++.|.|..
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~-d~~~IGqFGvGfySaf~va----dkv~V~Sk~ 153 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGA-DISMIGQFGVGFYSAYLVA----EKVVVITKH 153 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTC-CGGGGGGGTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccC-CcccccccCcccccccccC----CEEEEEEee
Confidence 47899999999999984322 1 121 1111 1223467899998764332 345565554
No 183
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=87.49 E-value=5.6 Score=38.45 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=73.0
Q ss_pred eCCHHHHHHHHHHHHhcCCEEE---EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC--
Q 001222 971 EDTPLIQIVACKILEKVGATVS---VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-- 1045 (1120)
Q Consensus 971 dD~~~n~~~l~~~L~~~g~~v~---~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~md-- 1045 (1120)
|-+..-..++..+|+..||+|. .....++.++++.+. .+|+|.+-+.|..-.
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~-----------------------~~d~v~lS~~~~~~~~~ 70 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET-----------------------KADAILVSSLYGQGEID 70 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-----------------------TCSEEEEEECSSTHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-----------------------CCCEEEEEecCcCcHHH
Confidence 4455666788889999999988 456678888877653 799999998885321
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccC-----C-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHA-----M-NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~-----~-~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
--++.+.+|+. +.++++|++ -+.. + .++...+.++|+|.|..---+..+....+...+
T Consensus 71 ~~~~i~~l~~~----g~~~i~v~v-GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 71 CKGLRQKCDEA----GLEGILLYV-GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTHHHHHHHT----TCTTCEEEE-EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCCEEEE-ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 12345566653 223566654 4432 1 122456889999999976667777777766544
No 184
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=87.01 E-value=1 Score=47.66 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCChhh-------HhhhhcccccCCC----CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001222 627 CFEVDDTGCGIDQSK-------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 695 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~-------l~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~ 695 (1120)
.++|.|+|.|||.+. .+-+|....-+.. ......|=.|.|++.|..|-+. +.|++.. .|-.+..
T Consensus 73 ~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~----l~v~v~r-~g~~~~q 147 (226)
T 4emv_A 73 SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSW----LEVEITR-DGAVYKQ 147 (226)
T ss_dssp CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEE----EEEEEEE-TTEEEEE
T ss_pred eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccc----eEEEEEe-CCcEEEE
Confidence 388999999999998 7777743221111 1111223468999998887653 3444432 2444444
Q ss_pred EE
Q 001222 696 YL 697 (1120)
Q Consensus 696 ~l 697 (1120)
.+
T Consensus 148 ~f 149 (226)
T 4emv_A 148 RF 149 (226)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 185
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=86.58 E-value=1.4 Score=46.60 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=34.6
Q ss_pred EEEEeCCCCCChhhH--------hhhhcccccCC---C-CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001222 628 FEVDDTGCGIDQSKW--------ETVFESFEQGD---P-STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 695 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l--------~~IFe~F~q~~---~-s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~g~GT~f~~ 695 (1120)
++|.|+|.|||.+.. +-+|....-+. . ......|=.|.||+.|..+-+. +.|++.. .|..+..
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~----l~v~v~r-~g~~~~~ 143 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK----LELVIQR-EGKIHRQ 143 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE----EEEEEEE-TTEEEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc----eEEEEEE-CCEEEEE
Confidence 889999999999864 44563221111 1 1111122368999999887653 3444432 2444444
Q ss_pred EE
Q 001222 696 YL 697 (1120)
Q Consensus 696 ~l 697 (1120)
.+
T Consensus 144 ~f 145 (220)
T 4duh_A 144 IY 145 (220)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 186
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=84.63 E-value=15 Score=34.37 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=78.9
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.+.....+..+...+...+. .+..+.....+...+.... ....+
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~-----------------------------~~~~~ 60 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY-----------------------------AAGRW 60 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH-----------------------------TSSCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh-----------------------------ccCCC
Confidence 4567778888888889999998887 5555555544443332210 11245
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+++.++..+.+.++.............+................| ...++.||+....+...+.....+
T Consensus 61 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 61 PSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 678999999999877544444332110011122233333334444445556667 888999999999999998877653
No 187
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=84.45 E-value=1.9 Score=49.59 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCChhh--------Hhhhhccccc-CC---CCCCCCCCCccchHHHHHHHHH
Q 001222 627 CFEVDDTGCGIDQSK--------WETVFESFEQ-GD---PSTTRKHGGTGLGLSIVRTLVN 675 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~--------l~~IFe~F~q-~~---~s~~~~~~GtGLGLaIvk~LVe 675 (1120)
.|+|.|+|.|||.+. .+-+|....- ++ ....-..|=.|.||+.|..+-+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc
Confidence 488999999999987 5556763211 11 0111122347999999988743
No 188
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=84.43 E-value=10 Score=34.79 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=74.9
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...|..+..+.........+. ..+..+
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~dl 49 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS----------------------------------EFTPDL 49 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT----------------------------------TBCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH----------------------------------hcCCCE
Confidence 4667777788888888999988877766554443322211 123468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
+++|..++++++....+.++...... .....+..............+.|...++.||+....+...+....
T Consensus 50 vllD~~~p~~~g~~~~~~l~~~~~~~--~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 50 IVLXIMMPVMDGFTVLKKLQEKEEWK--RIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp EEECSCCSSSCHHHHHHHHHTSTTTT--TSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCCCcHHHHHHHHHhccccc--CCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 89999999988755444433221111 122233333344445556677889999999999999988876654
No 189
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=84.14 E-value=4.6 Score=43.42 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=65.3
Q ss_pred HHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHHHH
Q 001222 980 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1052 (1120)
Q Consensus 980 l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-----~e~~~~ 1052 (1120)
..+.|.+.||.|. +..|...|-. +... .++.| |++-.|...| .+.++.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~-l~~~-----------------------G~~aV-mPlg~pIGsG~Gi~~~~~L~~ 170 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKR-LAAL-----------------------GTATV-MPLAAPIGSGWGVRTRALLEL 170 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHH-HHHH-----------------------TCSCB-EEBSSSTTTCCCSTTHHHHHH
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHH-HHhc-----------------------CCCEE-EecCccCcCCcccCCHHHHHH
Confidence 3455667899977 4456644443 3322 56766 8877776555 455788
Q ss_pred HHhcccccCCCC-cceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001222 1053 IRKSESEHGARN-IPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1106 (1120)
Q Consensus 1053 IR~~~~~~~~~~-ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~ 1106 (1120)
|++.. .+ +|||+=-+-..++|...+++.|+|+.+. |--++..+..++..
T Consensus 171 i~~~~-----~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 225 (268)
T 2htm_A 171 FAREK-----ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRL 225 (268)
T ss_dssp HHHTT-----TTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHhc-----CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 88632 24 8999877778899999999999999884 53345555555544
No 190
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=83.56 E-value=5.9 Score=41.89 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC------CCCCCHHHH
Q 001222 977 QIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------MPKMDGYEA 1049 (1120)
Q Consensus 977 ~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~------MP~mdG~e~ 1049 (1120)
..-+...+++.|..+. .+.+.++|..+.+. .+|+|..-.. .+...++++
T Consensus 118 l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~------------------------Gad~Ig~~~~g~t~~~~~~~~~~~l 173 (229)
T 3q58_A 118 IDSLLTRIRLHGLLAMADCSTVNEGISCHQK------------------------GIEFIGTTLSGYTGPITPVEPDLAM 173 (229)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHT------------------------TCSEEECTTTTSSSSCCCSSCCHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCHHHHHHHHhC------------------------CCCEEEecCccCCCCCcCCCCCHHH
Confidence 3344455566787655 46788888776642 5788853211 233456899
Q ss_pred HHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1050 TIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1050 ~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++++++. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 174 i~~l~~~-------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 174 VTQLSHA-------GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp HHHHHTT-------TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHc-------CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 9998852 48999999999999999999999999985
No 191
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=83.30 E-value=17 Score=33.63 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=77.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.+.....+..+..++...|..+..+.........+.. ..+..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~---------------------------------~~~~d 54 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY---------------------------------QKRIG 54 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH---------------------------------CTTEE
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh---------------------------------CCCCc
Confidence 457778888888888899998888776655544333222111 12367
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+.++..+.+.++... .... ...+..............+.|...++.||+....+...+.....+
T Consensus 55 lvi~D~~l~~~~g~~~~~~l~~~~--~~~~-~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 55 LMITDLRMQPESGLDLIRTIRASE--RAAL-SIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTST--TTTC-EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCCCHHHHHHHHHhcC--CCCC-CEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 899999998887654444433221 1222 223333333444555667788999999999999999999887654
No 192
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=83.05 E-value=18 Score=33.64 Aligned_cols=120 Identities=10% Similarity=0.084 Sum_probs=77.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.+.....+..+...+...|..+..+.........+. ..+.+
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~d 50 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY----------------------------------KNLPD 50 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH----------------------------------hCCCC
Confidence 35677778888888888899888877665554433332221 12457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..++++++..+.+.++.... .......+...........+..+.|...++.||+....+...+..+...
T Consensus 51 lvl~D~~lp~~~g~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 51 ALICDVLLPGIDGYTLCKRVRQHPL--TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHSGG--GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCC--cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 8899999999887544444332111 1112223333334444455667788899999999999999988877653
No 193
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=82.75 E-value=13 Score=34.50 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=75.0
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 714 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 714 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
.+..+++.......+..+...+...|..+..+.........+ ...+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~----------------------------------~~~~ 51 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV----------------------------------SHEH 51 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC----------------------------------CTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH----------------------------------hccC
Confidence 345678888888888888999988887665554433222110 0123
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhc---cceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHR---KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
.++++|..+++.++....+.++. .... ......+..............+.|..-++.||+....+...+..+..
T Consensus 52 -dlvllD~~lp~~~g~~~~~~l~~--~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 52 -KVVFMDVCMPGVENYQIALRIHE--KFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp -SEEEEECCSSTTTTTHHHHHHHH--HHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred -CEEEEeCCCCCCcHHHHHHHHHH--hhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 68899999998877443333321 1111 11122333333333444556678888999999999999988877664
No 194
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=82.40 E-value=14 Score=33.52 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=72.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...|..+..+.........+. ..+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~dl 49 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE----------------------------------ELQPDL 49 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------TTCCSE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh----------------------------------hCCCCE
Confidence 4667777777888888888888877665554433322221 124568
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++. .. .. ...+..............+.|..-++.||+....+...+.....
T Consensus 50 ii~D~~~p~~~g~~~~~~lr~---~~-~~-~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 50 ILLDIMLPNKDGVEVCREVRK---KY-DM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEETTSTTTHHHHHHHHHHT---TC-CS-CEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cC-CC-CEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 889999988766443333332 11 22 22333333333444556678889999999999998888776543
No 195
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=81.90 E-value=13 Score=34.16 Aligned_cols=120 Identities=12% Similarity=0.128 Sum_probs=70.9
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 714 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 714 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
.+..+++.......+..+..++...|..+..+.........+ ...+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l----------------------------------~~~~ 51 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----------------------------------GGFT 51 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH----------------------------------TTCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH----------------------------------hcCC
Confidence 345678888888888899999999887776655444333221 1124
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccC-ChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+.+.++....+.++. ......+. +...........+..+.|...++.||+ ....+...+..+..+
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii-~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLLEHIRN---RGDQTPVL-VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CSEEEECCC-----CHHHHHHHHH---TTCCCCEE-EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHh---cCCCCCEE-EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 568888988888776444333332 22222232 333333334445667788899999999 788888888777653
No 196
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=81.79 E-value=0.73 Score=49.45 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------c---ccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEe
Q 001222 627 CFEVDDTGCGIDQSKWETVFES--------F---EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 686 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~~IFe~--------F---~q~~~s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~ 686 (1120)
.|+|.|||+||+++++..-+-. | ++........-|-.|+|+.-|-.+ +-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV----AdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV----SNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT----EEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc----CCEEEEEEc
Confidence 4789999999999999865522 2 111111122346789999876433 355666665
No 197
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=81.09 E-value=21 Score=33.98 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=78.7
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++.......+..+..++...|..+..+.....+...+.. .++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~ 59 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS----------------------------------REV 59 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH----------------------------------SCC
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc----------------------------------CCC
Confidence 4567888888888889999999888777666655444333221 245
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
.++++|..+.+.++....+.++. ...... ..+...........+..+.| ...++.||+....+...+..+...
T Consensus 60 dlvi~D~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 60 DLVISAAHLPQMDGPTLLARIHQ---QYPSTT-RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHH---HCTTSE-EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCcHHHHHHHHHh---HCCCCe-EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 78999999998876444333332 222222 23333333334445566677 788999999999999988877654
No 198
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=80.79 E-value=2.5 Score=43.77 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.7
Q ss_pred EEEEEeCCCCCChh
Q 001222 627 CFEVDDTGCGIDQS 640 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e 640 (1120)
.++|.|+|.|||.+
T Consensus 64 ~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 64 WIKVTDNGRGIPVD 77 (198)
T ss_dssp EEEEEECSSCCCCS
T ss_pred eEEEEECCCCcccc
Confidence 48999999999987
No 199
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=80.61 E-value=18 Score=36.86 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=82.9
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecCCCCcccc----ccCCCCCCcEEEEeecChhhHHHHHHHHHhcCc-eeeeccc
Q 001222 673 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ----IYDADFPNTVVVLATVGSMERMIISQWLRKKKV-STLETSE 747 (1120)
Q Consensus 673 LVe~mGG~I~v~S~~g~GT~f~~~lpl~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 747 (1120)
-+.+|||.|+|+|++|+||+|+|+||+..+..... .......+..+++.++....+..+...+...|. .+..+..
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~ 94 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDS 94 (206)
T ss_dssp C---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESS
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCC
Confidence 46789999999999999999999999865432211 122234566889999999999999999999987 6666665
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEEEEEeeccccCchHHHHHhhhhhhhhcccee
Q 001222 748 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 827 (1120)
Q Consensus 748 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 827 (1120)
.......+..... ...........+++++++|..++++++..+.+.++...........
T Consensus 95 ~~eal~~l~~~~~---------------------~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~p 153 (206)
T 3mm4_A 95 GKEALRLVTEGLT---------------------QREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTP 153 (206)
T ss_dssp HHHHHHHHHHHHH---------------------HHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHhhcc---------------------cccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCc
Confidence 5544443322100 0000000012356799999999998875554444433222112222
Q ss_pred EeeeccCC-CchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 828 AWVVNHQT-TSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 828 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
.++..... ......+..+.|...++.||+. .+...+..+..
T Consensus 154 iI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 154 IIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp EEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred EEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 33333333 3345556777889999999998 77777766654
No 200
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=80.00 E-value=24 Score=32.40 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
.+++.......+..+..++...|..+. .+.........+.. .+..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~----------------------------------~~~d 48 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET----------------------------------LKPD 48 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH----------------------------------HCCS
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh----------------------------------cCCC
Confidence 456777777888889999998887665 44444333332221 2346
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+.++....+.++. ......+. +..............+.|...++.||+....+...+..+..+
T Consensus 49 lii~d~~l~~~~g~~~~~~l~~---~~~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 49 IVIIDVDIPGVNGIQVLETLRK---RQYSGIII-IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEEETTCSSSCHHHHHHHHHH---TTCCSEEE-EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCChHHHHHHHHh---cCCCCeEE-EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8899999988776443333332 22222333 333333333445566788889999999999999999887764
No 201
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=79.82 E-value=25 Score=32.15 Aligned_cols=118 Identities=11% Similarity=0.060 Sum_probs=75.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+...+...|..+..+.........+. ..+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~d 52 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS----------------------------------TFEPA 52 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HTCCS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH----------------------------------hcCCC
Confidence 45777788888888899999888877766655444333221 12346
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhc-cceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHR-KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+.++....+.++. ... ......+.... ......+..+.|...++.||+....+...+.....+
T Consensus 53 lii~d~~l~~~~g~~~~~~l~~---~~~~~~~~ii~~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 53 IMTLDLSMPKLDGLDVIRSLRQ---NKVANQPKILVVSGL-DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEEESCBTTBCHHHHHHHHHT---TTCSSCCEEEEECCS-CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCCCHHHHHHHHHh---cCccCCCeEEEEeCC-ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 8899999988876444333332 121 11222233322 233455667788899999999999999988876653
No 202
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=79.57 E-value=12 Score=34.89 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=76.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+..++...|..+..+.....+...+.. .+..
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 52 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR----------------------------------RPYA 52 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH----------------------------------SCCS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh----------------------------------CCCC
Confidence 457778888888888999999888877666655444333221 2457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhH-hhhhcCCcEEEeccCChhHHHHHHHHHHhcc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKT-ELSREGQNIVVTKPLYKGKMIQLLETAVRGK 872 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 872 (1120)
++++|..+.+.++..+.+.++..... ....+..+... ....... ...+.|...++.||+....+...+..++.+.
T Consensus 53 lvi~d~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~s~~-~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 53 AMTVDLNLPDQDGVSLIRALRRDSRT-RDLAIVVVSAN-AREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTSGGG-TTCEEEEECTT-HHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCccc-CCCCEEEEecC-CChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 88899999888775444444331111 12222222221 1111222 4566788889999999999999988877643
No 203
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=78.97 E-value=19 Score=34.39 Aligned_cols=120 Identities=8% Similarity=0.069 Sum_probs=78.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.+.....+..+...+...|..+..+.....+...+. ..+++
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~d 53 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS----------------------------------LTRPD 53 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT----------------------------------TCCCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH----------------------------------hCCCC
Confidence 45777888888888899999988877666555443332221 13457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+++.++..+.+.++...... ... ..+..............+.|...++.||+....+...+..+..+
T Consensus 54 lii~D~~l~~~~g~~~~~~lr~~~~~~-~~p-ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 54 LIISDVLMPEMDGYALCRWLKGQPDLR-TIP-VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHSTTTT-TSC-EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCcC-CCC-EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 899999999887654444443221111 112 22333333344455667788899999999999999988887654
No 204
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=78.90 E-value=2.9 Score=48.41 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCC----CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC-CCceEE
Q 001222 627 CFEVDDTGCGIDQSKWE--------TVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN-SPGTLM 693 (1120)
Q Consensus 627 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~mGG~I~v~S~~-g~GT~f 693 (1120)
.++|.|+|.|||.+..+ -||....-+.. +.....|=.|.|.+.|.-|-+.+ .|+... ..|-.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~l----~V~v~r~rdGk~y 174 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF----ILETADLNVGQKY 174 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEE----EEEEEETTTTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccceE----EEEEEECCCCcEE
Confidence 37899999999988643 36644322211 11112234799999998876543 344332 234444
Q ss_pred EEEE
Q 001222 694 QLYL 697 (1120)
Q Consensus 694 ~~~l 697 (1120)
...+
T Consensus 175 ~q~f 178 (418)
T 1pvg_A 175 VQKW 178 (418)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 205
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=78.88 E-value=11 Score=40.00 Aligned_cols=85 Identities=8% Similarity=-0.046 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC------CCCCCHHHH
Q 001222 977 QIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------MPKMDGYEA 1049 (1120)
Q Consensus 977 ~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~------MP~mdG~e~ 1049 (1120)
..-+...+++.|..+. .+.+.++|..+.+. ..|+|..-.. .+...++++
T Consensus 118 l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~------------------------Gad~Ig~~~~g~t~~~~~~~~~~~~ 173 (232)
T 3igs_A 118 VEALLARIHHHHLLTMADCSSVDDGLACQRL------------------------GADIIGTTMSGYTTPDTPEEPDLPL 173 (232)
T ss_dssp HHHHHHHHHHTTCEEEEECCSHHHHHHHHHT------------------------TCSEEECTTTTSSSSSCCSSCCHHH
T ss_pred HHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC------------------------CCCEEEEcCccCCCCCCCCCCCHHH
Confidence 3344455566787655 46778887776642 5788753211 123346899
Q ss_pred HHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1050 TIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1050 ~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++++++. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 174 i~~l~~~-------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 174 VKALHDA-------GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHHHHHT-------TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhc-------CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 9998863 48999999988999999999999999985
No 206
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=78.03 E-value=29 Score=31.29 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=70.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+.. .+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 50 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK----------------------------------ERPDL 50 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------------------------------cCCCE
Confidence 46667777777888888888877766554443333222211 13468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++ .......+.++. .........+..+.|....+.||+....+...+.....
T Consensus 51 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s-~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 51 VLLDMKIPGMDGIEILKRMK---VIDENIRVIIMT-AYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEESCCTTCCHHHHHHHHH---HHCTTCEEEEEE-SSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEecCCCCCCHHHHHHHHH---HhCCCCCEEEEE-ccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 88999998877643333332 222223333333 33333344556667888889999999999888876543
No 207
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=77.39 E-value=38 Score=30.69 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=72.6
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+...+...|..+..+.........+ ...+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~d 49 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA----------------------------------PDVRNG 49 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG----------------------------------GGCCSE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH----------------------------------hcCCCC
Confidence 3567777888888888888888776655444322221110 112457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++|..+++.++....+.++ .......+..+ .............+.|...++.||+....+...+..+..
T Consensus 50 lvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 50 VLVTDLRMPDMSGVELLRNLG---DLKINIPSIVI-TGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEEEECCSTTSCHHHHHHHHH---HTTCCCCEEEE-ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHH---hcCCCCCEEEE-ECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 899999998887643333332 22222233333 333333444566678889999999999999988877654
No 208
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=77.09 E-value=26 Score=32.59 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=75.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+..++...|..+..+.........+.. ..+.+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---------------------------------~~~~d 52 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG---------------------------------GWYPD 52 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT---------------------------------TCCCS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc---------------------------------CCCCC
Confidence 457778888888889999999888777665554443322211 12457
Q ss_pred EEEEEeeccc-cCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLD-LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+++ .++....+.++. . ....+..+... ..........+.|...++.||+....+...+..+...
T Consensus 53 lvi~D~~l~~~~~g~~~~~~l~~---~-~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 53 LILMDIELGEGMDGVQTALAIQQ---I-SELPVVFLTAH-TEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEEESSCSSSCCHHHHHHHHHH---H-CCCCEEEEESS-SSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCCCHHHHHHHHHh---C-CCCCEEEEECC-CCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 8899999875 666443333332 2 22223333333 3333445566678888999999999999988877653
No 209
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=76.60 E-value=20 Score=33.18 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=75.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+..++...+..+..+.....+...+.. .+..+
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~----------------------------------~~~dl 54 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL----------------------------------HAPDV 54 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc----------------------------------cCCCE
Confidence 46777777888888888888877666666555444333221 13468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+.+.++..+.+.++. ...... ..+..............+.|...++.||+....+...+..+..+
T Consensus 55 vi~d~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 55 IITDIRMPKLGGLEMLDRIKA---GGAKPY-VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp EEECSSCSSSCHHHHHHHHHH---TTCCCE-EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cCCCCc-EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 889998888776444333332 222222 23333333334455667788899999999999999998887654
No 210
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=76.46 E-value=26 Score=32.10 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=73.6
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
..+++.+.....+..+...+...|.. +..+.........+. ...+.
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~---------------------------------~~~~~ 52 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD---------------------------------ANADT 52 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH---------------------------------HCTTC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH---------------------------------hCCCC
Confidence 34677788888888888888888764 333333222211110 01235
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
.++++|..++++++....+.++...... . ....+..............+.|..-++.||+....+...+..+..
T Consensus 53 dlvi~D~~~p~~~g~~~~~~lr~~~~~~-~-~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 53 KVLITDWNMPEMNGLDLVKKVRSDSRFK-E-IPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEECSCCSSSCHHHHHHHHHTSTTCT-T-CCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCCC-C-CeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 6888999999988754444443211111 1 222333333444445566778899999999999999998887664
No 211
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=75.59 E-value=39 Score=31.32 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=77.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...|..+..+.........+.. ...+.++
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--------------------------------~~~~~dl 52 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE--------------------------------NCNSIDV 52 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--------------------------------TTTTCCE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh--------------------------------CCCCCCE
Confidence 46677777888888899999888777666554443332211 1234578
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+.+.++..+.+.++. ......+. +..............+.|...++.||+....+...+..+...
T Consensus 53 vi~d~~l~~~~g~~~~~~l~~---~~~~~~ii-~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 53 VITDMKMPKLSGMDILREIKK---ITPHMAVI-ILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EEEESCCSSSCHHHHHHHHHH---HCTTCEEE-EEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHH---hCCCCeEE-EEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 899999988776444333332 22222233 333333334455667788889999999999999988887654
No 212
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=75.58 E-value=36 Score=30.52 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=68.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 48 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR----------------------------------ENKPDL 48 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH----------------------------------HHCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh----------------------------------cCCCCE
Confidence 4566777777788888888887776655443332222111 113468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++...... ...+..+ .............+.|....+.||+....+...+..+..
T Consensus 49 vi~D~~l~~~~g~~~~~~l~~~~~~~-~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 49 ILMDIQLPEISGLEVTKWLKEDDDLA-HIPVVAV-TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEESBCSSSBHHHHHHHHHHSTTTT-TSCEEEE-C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHcCcccc-CCcEEEE-ECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 89999998887644333333211111 1222222 222223334455667888999999999999988877653
No 213
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=75.26 E-value=42 Score=29.93 Aligned_cols=114 Identities=13% Similarity=0.180 Sum_probs=68.1
Q ss_pred EEEEeecChhhHHHHHHHHHhcCce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
.+++.......+..+...+...|.. ...+.........+.. .+..
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~----------------------------------~~~d 49 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE----------------------------------LKPD 49 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------HCCS
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh----------------------------------cCCC
Confidence 4566777777788888888887776 3344433333222211 1346
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 868 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 868 (1120)
++++|..+++.++....+.++ .......+..+ .............+.|....+.||+....+...+..+
T Consensus 50 lil~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 50 IVTMDITMPEMNGIDAIKEIM---KIDPNAKIIVC-SAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp EEEEECSCGGGCHHHHHHHHH---HHCTTCCEEEE-ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHH---hhCCCCeEEEE-eCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 888999998877643333332 22222223333 3333334445566788889999999999888877553
No 214
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=75.22 E-value=3.7 Score=47.21 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=25.4
Q ss_pred EEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCCccchHHHHHHHHHH
Q 001222 628 FEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~l--------~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~ 676 (1120)
++|.|+|.|||.+.. +-+|....-+.. ......|=.|.|++.|.-|-+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 889999999999873 455633221111 1111122369999999887644
No 215
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=75.20 E-value=37 Score=31.39 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=74.1
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++.......+..+...+...|..+..+.....+...+. ..+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 52 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK----------------------------------KGFS 52 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------TCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH----------------------------------hcCC
Confidence 345777788888888889999888877666555444333221 1245
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
.++++|..+.+.++....+.++... ......+..+.. ...........+.|...++.||+....+...+..+..
T Consensus 53 dlii~d~~l~~~~g~~~~~~l~~~~-~~~~~pii~~s~-~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 53 GVVLLDIMMPGMDGWDTIRAILDNS-LEQGIAIVMLTA-KNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEEEEESCCSSSCHHHHHHHHHHTT-CCTTEEEEEEEC-TTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhc-ccCCCCEEEEEC-CCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 7899999888876643333332210 111222223332 2223333445567788889999999999988887764
No 216
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=75.06 E-value=40 Score=30.94 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=74.8
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
...+++.......+..+...+...|..+. .+.....+...+.. .+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~----------------------------------~~ 54 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD----------------------------------LR 54 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh----------------------------------CC
Confidence 34577788888888888999988888776 35554444333221 13
Q ss_pred cEEEEEEeecc-ccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+. +.++....+.++. . ....+..+ .............+.|...++.||+....+...+..+..+
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~l~~---~-~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAARLAA---G-CNLPIIFI-TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHHHHH---H-SCCCEEEE-ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHh---C-CCCCEEEE-ecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 46888898887 5665433333322 2 22223333 3333334445566788889999999999999988887654
No 217
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=74.87 E-value=28 Score=31.60 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=72.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+..++...|..+..+.....+...+.. .+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 49 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST----------------------------------RGYD 49 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh----------------------------------cCCC
Confidence 356777788888888999999988877666655444333221 2357
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
++++|..+.+.++....+.++.... .....+..+...... .. ......|...++.||+....+...+....
T Consensus 50 lii~D~~l~~~~g~~~~~~l~~~~~-~~~~~ii~~s~~~~~-~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 50 AVFIDLNLPDTSGLALVKQLRALPM-EKTSKFVAVSGFAKN-DL-GKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp EEEEESBCSSSBHHHHHHHHHHSCC-SSCCEEEEEECC-CT-TC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhhc-cCCCCEEEEECCcch-hH-HHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 8899999988876444333332110 112223333333222 22 44455667789999999999988876654
No 218
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=74.33 E-value=38 Score=30.31 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=71.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+.. .+..+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 52 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR----------------------------------DRPDL 52 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh----------------------------------cCCCE
Confidence 46667777777888888888888776665554443332221 13467
Q ss_pred EEEEeecc-ccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+. +.++....+.++...... ...+..+ . ...........+.|...++.||+....+...+..+..
T Consensus 53 vi~d~~~~~~~~g~~~~~~l~~~~~~~-~~~ii~~-~-~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 53 VVLAVDLSAGQNGYLICGKLKKDDDLK-NVPIVII-G-NPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEEESBCGGGCBHHHHHHHHHHSTTTT-TSCEEEE-E-CGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCCCHHHHHHHHhcCcccc-CCCEEEE-e-cCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 88898887 766543333333221111 2222233 2 2233444566678888899999999999888877653
No 219
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=74.33 E-value=36 Score=31.76 Aligned_cols=120 Identities=8% Similarity=0.006 Sum_probs=75.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+...+...|..+..+.....+...+.. .+..
T Consensus 9 ~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 54 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK----------------------------------THPH 54 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH----------------------------------HCCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc----------------------------------CCCC
Confidence 456777777777888888888888777666555444333221 1356
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+.++..+.+.++... ......+..+ .............+.|...++.||+....+...+..+...
T Consensus 55 lii~d~~l~~~~g~~~~~~l~~~~-~~~~~pii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 55 LIITEANMPKISGMDLFNSLKKNP-QTASIPVIAL-SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESCCSSSCHHHHHHHHHTST-TTTTSCEEEE-ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHcCc-ccCCCCEEEE-eCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 888999888876643333333211 1112223333 3333344455666788889999999999999888877653
No 220
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=73.55 E-value=45 Score=30.54 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=72.9
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~dl 50 (132)
T 3crn_A 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE----------------------------------NEFFNL 50 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh----------------------------------cCCCCE
Confidence 4667777788888888888887876655544433322221 123468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..++++++....+.++ .......+ .+..............+.|..-++.||+....+...+..+..
T Consensus 51 vl~D~~l~~~~g~~~~~~l~---~~~~~~~i-i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 51 ALFXIKLPDMEGTELLEKAH---KLRPGMKK-IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEECSBCSSSBHHHHHHHHH---HHCTTSEE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCchHHHHHHHH---hhCCCCcE-EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 88999998877643333332 22222222 333333333444566678889999999999999988877654
No 221
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=73.29 E-value=52 Score=30.93 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=76.2
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCce--eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVS--TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 792 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1120)
+..+++.+.....+..+...+...+.. +..+.....+...+.. .
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~----------------------------------~ 60 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA----------------------------------H 60 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH----------------------------------H
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh----------------------------------c
Confidence 456788888888888899999888733 3344444433332221 2
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+.+++++|..+.+.++....+.++. ...... ..+..............+.|...++.||+....+...+..+..+
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRS---YELPTR-VLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHH---TTCSCE-EEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCe-EEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 3468899999888776443333322 222222 23333334444555667788999999999999999998887764
No 222
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=72.93 E-value=50 Score=30.33 Aligned_cols=120 Identities=11% Similarity=0.079 Sum_probs=75.1
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRK-KKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.......+..+...+.. .|.. +..+.....+...+.. .+
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~----------------------------------~~ 54 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT----------------------------------VK 54 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH----------------------------------TC
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh----------------------------------cC
Confidence 4577778888888888888888 7776 5555554443332221 23
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+.+.++....+.++... ...... ..+..............+.|...++.||+....+...+..+...
T Consensus 55 ~dlii~d~~l~~~~g~~~~~~l~~~~-~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 55 PDVVMLDLMMVGMDGFSICHRIKSTP-ATANII-VIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHHTST-TTTTSE-EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCEEEEecccCCCcHHHHHHHHHhCc-cccCCc-EEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 46888898888876543333332210 111222 22333333334445666788889999999999999998887653
No 223
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=72.86 E-value=52 Score=29.37 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=69.9
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dl 49 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ----------------------------------NQSVDL 49 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh----------------------------------cCCCCE
Confidence 4566777777788888888877776555443332222111 123467
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++. .....+ .+..............+.|...++.||+....+...+..+..
T Consensus 50 vi~d~~l~~~~g~~~~~~l~~----~~~~~i-i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 50 ILLDINLPDENGLMLTRALRE----RSTVGI-ILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp EEEESCCSSSCHHHHHHHHHT----TCCCEE-EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCChHHHHHHHHh----cCCCCE-EEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 889999988876433333322 122222 233333333344556678888999999999999888776543
No 224
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=72.78 E-value=40 Score=30.77 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=74.7
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.......+..+...+...|. .+..+.....+...+... .......+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~---------------------------~~~~~~~~ 55 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQE---------------------------GEYANASR 55 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTC---------------------------GGGGSCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcc---------------------------cccccCCC
Confidence 4567778888888889999998886 555555444433222100 00000134
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
..++++|..+.+.++....+.++..... ....+..+ .............+.|...++.||+....+...+..+..
T Consensus 56 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~-~~~pii~l-s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 56 PDLILLXLNLPKKDGREVLAEIKSDPTL-KRIPVVVL-STSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTG-GGSCEEEE-ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCcccHHHHHHHHHcCccc-ccccEEEE-ecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 5788899988887764333333321111 12222233 333333444566678888999999999999988877754
No 225
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=72.74 E-value=35 Score=31.53 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=73.1
Q ss_pred EEEEeecChhhHHHHHHHHHhcCce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
.+++.+.....+..+...+...|.. +..+.........+... .....++.
T Consensus 4 ~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~-----------------------------~~~~~~~d 54 (133)
T 2r25_B 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL-----------------------------TSKGENYN 54 (133)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH-----------------------------HHHTCCCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHH-----------------------------HhcCCCCC
Confidence 4667778888888888888877753 33343333322222111 01113457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++|+.++++++....+.++.. ...... ..+...........+..+.|..-++.||+....+...+.....
T Consensus 55 lvllD~~mp~~~G~~~~~~lr~~--~~~~~~-ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 55 MIFMDVQMPKVDGLLSTKMIRRD--LGYTSP-IVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp EEEECSCCSSSCHHHHHHHHHHH--SCCCSC-EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred EEEEeCCCCCCChHHHHHHHHhh--cCCCCC-EEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 89999999998875433333211 111222 2333333333445566678889999999999999988877653
No 226
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=72.50 E-value=29 Score=32.03 Aligned_cols=117 Identities=14% Similarity=0.004 Sum_probs=73.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC-ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 716 TVVVLATVGSMERMIISQWLRKKK-VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
..+++.......+..+..++...| ..+..+......... . ...+.
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~--------------------------------l--~~~~~ 60 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGP--------------------------------P--ADTRP 60 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCC--------------------------------C--TTCCC
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHH--------------------------------H--hccCC
Confidence 357778888888888999999888 766655443322110 0 12345
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
.++++|..+++.++..+.+.++. ......+ .+..............+.|...++.||+....+...+..+..
T Consensus 61 dlvi~D~~l~~~~g~~~~~~l~~---~~~~~~i-i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 61 GIVILDLGGGDLLGKPGIVEARA---LWATVPL-IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp SEEEEEEETTGGGGSTTHHHHHG---GGTTCCE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CEEEEeCCCCCchHHHHHHHHHh---hCCCCcE-EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 78999999988776433333222 1122222 333333344455566778889999999999999888776543
No 227
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=72.48 E-value=16 Score=34.01 Aligned_cols=120 Identities=10% Similarity=0.079 Sum_probs=75.8
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhcc-CC
Q 001222 716 TVVVLATVGSMERMIISQWLRK-KKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI-DP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p 793 (1120)
..+++.......+..+..++.. .|..+..+.....+...+ .. .+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l----------------------------------~~~~~ 50 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF----------------------------------KDLDS 50 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT----------------------------------TTCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH----------------------------------hcCCC
Confidence 3577788888888889999998 887776655544322111 01 34
Q ss_pred cEEEEEEeecc-ccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+. +.++....+.++... ......+ .+..............+.|...++.||+....+...+..+..+
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~-~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNS-RTANTPV-IIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSG-GGTTCCE-EEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCc-ccCCCCE-EEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 57888898887 665543333332211 1122222 3333333344555667788899999999999999999887764
No 228
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=72.31 E-value=39 Score=31.81 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=75.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC--ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKK--VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.+.....+..+..++...+ ..+..+.....+...+. ..+
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~----------------------------------~~~ 66 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE----------------------------------KES 66 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT----------------------------------TSC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh----------------------------------ccC
Confidence 357777888888888888888776 44444544433322211 124
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+.+.++....+.++. ......+ .+...........+..+.|...++.||+....+...+..+..+
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~---~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRS---EKLETKV-VVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHH---TTCSCEE-EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHH---hCCCCeE-EEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 578889999888776443333322 2222233 3333333444556677788999999999999999998887754
No 229
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=71.85 E-value=53 Score=30.11 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=69.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcC--ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 717 VVVLATVGSMERMIISQWLRKKK--VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
.+++.......+..+...+...+ ..+..+.........+.. .+.
T Consensus 5 ~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~----------------------------------~~~ 50 (133)
T 3b2n_A 5 SLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE----------------------------------YNP 50 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh----------------------------------cCC
Confidence 45667777777888888888765 333334333322222111 134
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++++|..++++++....+.++ .......+ .+...........+..+.|....+.||+....+...+..+..
T Consensus 51 dlvilD~~lp~~~g~~~~~~l~---~~~~~~~i-i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 51 NVVILDIEMPGMTGLEVLAEIR---KKHLNIKV-IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SEEEECSSCSSSCHHHHHHHHH---HTTCSCEE-EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCCHHHHHHHHH---HHCCCCcE-EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 6888999998887643333332 21122223 333333333445566678889999999999999988887764
No 230
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=71.17 E-value=42 Score=31.65 Aligned_cols=119 Identities=11% Similarity=0.125 Sum_probs=74.0
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++.......+..+...+...|..+..+.....+...+. ..+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 52 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK----------------------------------GTSV 52 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT----------------------------------TSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCCC
Confidence 456778888888888899999888877666555443332221 1245
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
.++++|..+.+.++....+.+. .......+..+.... .........+.| ...++.||+....+...+..+...
T Consensus 53 dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 53 QLVISDMRMPEMGGEVFLEQVA---KSYPDIERVVISGYA-DAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp SEEEEESSCSSSCHHHHHHHHH---HHCTTSEEEEEECGG-GHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHH---HhCCCCcEEEEecCC-CHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 7889999988876643333332 222223333333322 223334444555 788999999999999888877653
No 231
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=71.10 E-value=17 Score=36.08 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=77.0
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++.++....+..+...+...|..+..+.........+. ..+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~ 52 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG----------------------------------AEKF 52 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT----------------------------------TSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh----------------------------------hCCC
Confidence 346788888888899999999988887766655444332221 1345
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
+++++|..++++++..+.+.++. ...... ..+...........+..+.|...++.||+....+...+..+.
T Consensus 53 dlvl~D~~lp~~~g~~~~~~l~~---~~~~~~-ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 53 EFITVXLHLGNDSGLSLIAPLCD---LQPDAR-ILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp SEEEECSEETTEESHHHHHHHHH---HCTTCE-EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CEEEEeccCCCccHHHHHHHHHh---cCCCCC-EEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 78999999999887544444332 112222 333344444455566777889999999999998887765544
No 232
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=71.03 E-value=58 Score=29.11 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=69.9
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 50 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS----------------------------------EYDINL 50 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh----------------------------------cCCCCE
Confidence 4667777777788888888877776555444333222211 123467
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++. . ....+.. ..............+.|...++.||+....+...+..+..
T Consensus 51 vi~D~~l~~~~g~~~~~~l~~---~-~~~~ii~-~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 51 VIMDINLPGKNGLLLARELRE---Q-ANVALMF-LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp EEECSSCSSSCHHHHHHHHHH---H-CCCEEEE-EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHh---C-CCCcEEE-EECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 888998888776433333322 1 2222223 3333333344555678888899999999998888776553
No 233
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=70.91 E-value=45 Score=30.64 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=72.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+...+...|..+..+.....+...+. ..+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~d 49 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR----------------------------------EENPE 49 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH----------------------------------HSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH----------------------------------cCCCC
Confidence 34667777777888888888888877665555444333221 12457
Q ss_pred EEEEEeecc-----ccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 796 VVVIDIALL-----DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 796 ~~~id~~l~-----d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++|..+. +.++....+.++ .......+..+... ..........+.|...++.||+....+...+..+..
T Consensus 50 lvi~d~~~~~~~~~~~~g~~~~~~l~---~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 50 VVLLDMNFTSGINNGNEGLFWLHEIK---RQYRDLPVVLFTAY-ADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp EEEEETTTTC-----CCHHHHHHHHH---HHCTTCCEEEEEEG-GGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEEeCCcCCCCCCCccHHHHHHHHH---hhCcCCCEEEEECC-CCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 888898877 655433322222 22222333333332 223344556678888999999999999999888765
Q ss_pred c
Q 001222 871 G 871 (1120)
Q Consensus 871 ~ 871 (1120)
+
T Consensus 126 ~ 126 (140)
T 2qr3_A 126 Q 126 (140)
T ss_dssp C
T ss_pred h
Confidence 4
No 234
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=70.77 E-value=38 Score=30.90 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=69.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+. .+..+..+.........+. ..+..+
T Consensus 6 ~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~----------------------------------~~~~dl 50 (133)
T 3nhm_A 6 KVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL----------------------------------AHPPDV 50 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 46677777777777777777 6666555554443332221 124578
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+.+.++..+.+.++...... ...+..+.. ...... ....+.|...++.||+....+...+..++..
T Consensus 51 vi~d~~l~~~~g~~~~~~l~~~~~~~-~~pii~~s~-~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 51 LISDVNMDGMDGYALCGHFRSEPTLK-HIPVIFVSG-YAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEECSSCSSSCHHHHHHHHHHSTTTT-TCCEEEEES-CCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCccC-CCCEEEEeC-CCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 89999988877654444433221111 222223332 222333 5566778888999999999999999888764
No 235
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=70.74 E-value=50 Score=30.50 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=71.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 6 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~dl 51 (136)
T 2qzj_A 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF----------------------------------SNKYDL 51 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HCCCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----------------------------------hcCCCE
Confidence 4667777777788888888877766554444333222111 123478
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++..+.+.++. .. ...+. +..............+.|..-++.||+....+...+..+..
T Consensus 52 vllD~~l~~~~g~~l~~~l~~---~~-~~~ii-~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 52 IFLEIILSDGDGWTLCKKIRN---VT-TCPIV-YMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEEESEETTEEHHHHHHHHHT---TC-CCCEE-EEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHcc---CC-CCCEE-EEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 899999988776433333332 11 22232 33333333444556678888999999999999988877654
No 236
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=70.57 E-value=19 Score=39.04 Aligned_cols=115 Identities=12% Similarity=0.019 Sum_probs=77.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
..++++++....+..+...+...|..+. .+.........+.. .++
T Consensus 161 ~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~----------------------------------~~~ 206 (286)
T 3n0r_A 161 TEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR----------------------------------RTP 206 (286)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------CCC
T ss_pred CcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh----------------------------------CCC
Confidence 3567788888999999999999999887 66655444433221 245
Q ss_pred EEEEEEeecc-ccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++++|+.++ .+++......++... ...+..+... . .......+.|.+-++.||+....+...+..++..
T Consensus 207 dlvl~D~~MPd~mdG~e~~~~ir~~~----~~piI~lT~~-~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 207 GLVLADIQLADGSSGIDAVKDILGRM----DVPVIFITAF-P--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp SEEEEESCCTTSCCTTTTTHHHHHHT----TCCEEEEESC-G--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHhcC----CCCEEEEeCC-H--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 7899999999 588754444433322 2222222222 1 2233455678888999999999999998887653
No 237
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=70.52 E-value=25 Score=30.91 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=66.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+.. .+..+
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~----------------------------------~~~dl 48 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL----------------------------------LQPIV 48 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh----------------------------------cCCCE
Confidence 45667777777888888888888776665554443332211 13467
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 868 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 868 (1120)
+++|..+.+.++....+.++..... ....+.++...... . ...+.|....+.||+....+...+...
T Consensus 49 ii~d~~~~~~~~~~~~~~l~~~~~~-~~~~ii~~~~~~~~-~---~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 49 ILMAWPPPDQSCLLLLQHLREHQAD-PHPPLVLFLGEPPV-D---PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp EEEECSTTCCTHHHHHHHHHHTCCC-SSCCCEEEESSCCS-S---HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHhcccc-CCCCEEEEeCCCCc-h---hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 8888888776654333333221101 12222333332222 2 556677888899999999888776543
No 238
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.01 E-value=53 Score=30.40 Aligned_cols=116 Identities=11% Similarity=0.209 Sum_probs=69.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+.. .+.++
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~dl 51 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER----------------------------------SKPQL 51 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh----------------------------------cCCCE
Confidence 45666666777777777777777665544443333222211 13468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++ .......+ .+..............+.|...++.||+....+...+..+..
T Consensus 52 vllD~~l~~~~g~~l~~~l~---~~~~~~~i-i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 52 IILDLKLPDMSGEDVLDWIN---QNDIPTSV-IIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEECSBCSSSBHHHHHHHHH---HTTCCCEE-EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH---hcCCCCCE-EEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 88999988877643333332 22222222 333333333444566678888999999999999988877654
No 239
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=69.89 E-value=62 Score=29.83 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=69.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...|..+..+.........+. ..+..+
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~dl 50 (138)
T 3c3m_A 5 TILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN----------------------------------ATPPDL 50 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh----------------------------------ccCCCE
Confidence 4667777788888888888888876665544333322221 123478
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+++.++....+.++..... ....+..+.... ...........|...++.||+....+...+..+...
T Consensus 51 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~ls~~~-~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 51 VLLDIMMEPMDGWETLERIKTDPAT-RDIPVLMLTAKP-LTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEESCCSSSCHHHHHHHHHHSTTT-TTSCEEEEESSC-CCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCCHHHHHHHHHcCccc-CCCCEEEEECCC-ChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 8999999988764433333321111 122233333322 222222223344567899999999999888877653
No 240
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=69.84 E-value=30 Score=39.03 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=78.0
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.++++++....+..+..++...|..+..+.........+.. .++++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~----------------------------------~~~Dl 47 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE----------------------------------LFFPV 47 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------BCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 36677788888889999999888877666554443332211 23568
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|+.++++++....+.++. ...... ..+.+.........+..+.|..-++.||+....+...+..+...
T Consensus 48 vllDi~mP~~dG~ell~~lr~---~~~~~p-vI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 118 (368)
T 3dzd_A 48 IVLDVWMPDGDGVNFIDFIKE---NSPDSV-VIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368)
T ss_dssp EEEESEETTEETTTHHHHHHH---HCTTCE-EEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---hCCCCe-EEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999987544443332 112222 33334334445556667788899999999999999888877653
No 241
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=69.74 E-value=36 Score=31.43 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=74.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.+.....+..+...+...|..+..+......... . ...+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~--------------------------------l--~~~~~d 52 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQ--------------------------------Q--ISDDAI 52 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTS--------------------------------C--CCTTEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHH--------------------------------H--hccCCC
Confidence 356777778888888888888888766655443221100 0 113467
Q ss_pred EEEEEeeccc--cCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLD--LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+ .++..+.+.++ .......+ .+..............+.|...++.||+....+...+..+..+
T Consensus 53 lvi~D~~l~~~~~~g~~~~~~l~---~~~~~~~i-i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 53 GMIIEAHLEDKKDSGIELLETLV---KRGFHLPT-IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp EEEEETTGGGBTTHHHHHHHHHH---HTTCCCCE-EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EEEEeCcCCCCCccHHHHHHHHH---hCCCCCCE-EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 8999998888 66543333332 22222233 3333333334455666788899999999999999998887664
No 242
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=69.68 E-value=36 Score=31.67 Aligned_cols=121 Identities=9% Similarity=0.028 Sum_probs=75.4
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCce--eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVS--TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 792 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1120)
...+++.......+..+..++...|.. +..+.....+...+. ..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~----------------------------------~~ 50 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ----------------------------------QA 50 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT----------------------------------TC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh----------------------------------cC
Confidence 345777888888888899999888765 444444433322211 13
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccC-ChhHHHHHHHHHHhc
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 871 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 871 (1120)
+..++++|..+.+.++..+.+.++.... .....+ .+..............+.|...++.||+ ....+...+..++..
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~~lr~~~~-~~~~pi-i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 51 KYDLIILDIGLPIANGFEVMSAVRKPGA-NQHTPI-VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CCSEEEECTTCGGGCHHHHHHHHHSSST-TTTCCE-EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhccc-ccCCCE-EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 4568888988888776443333332111 112222 3333333444555667788999999999 999999988887653
No 243
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=69.58 E-value=65 Score=30.19 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=78.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.+.....+..+...+...|. .+..+.........+..... .......+
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~-------------------------~~~~~~~~ 59 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK-------------------------SGRVSAGR 59 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS-------------------------SSGGGTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc-------------------------ccccccCC
Confidence 3567777888888888999998887 55555554443333221000 00011346
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
..++++|..+.+.++....+.++..... ....+ .+...........+..+.|...++.||+....+...+..+..
T Consensus 60 ~dliilD~~l~~~~g~~~~~~lr~~~~~-~~~pi-i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 60 AQLVLLDLNLPDMTGIDILKLVKENPHT-RRSPV-VILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp BEEEEECSBCSSSBHHHHHHHHHHSTTT-TTSCE-EEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcccc-cCCCE-EEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7899999999988775444443321111 12222 233333333445566778889999999999999998888754
No 244
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=69.40 E-value=67 Score=29.24 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=70.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 50 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE----------------------------------TEKPDL 50 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HHCCSE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh----------------------------------hcCCCE
Confidence 4666777777777888888877776555444333222111 113468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++ .......+..+.... .........+.|...++.||+....+...+..+..
T Consensus 51 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 51 IVLDVMLPKLDGIEVCKQLR---QQKLMFPILMLTAKD-EEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp EEEESSCSSSCHHHHHHHHH---HTTCCCCEEEEECTT-CCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH---cCCCCCCEEEEECCC-CHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 88999998877643333332 222223333333332 23334455678888899999999999988887664
No 245
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=69.34 E-value=50 Score=29.19 Aligned_cols=112 Identities=9% Similarity=0.062 Sum_probs=66.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+.........+. ..+..+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 48 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF----------------------------------SGNYDL 48 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh----------------------------------cCCCCE
Confidence 3566677777788888888888876665554333322211 123468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 868 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 868 (1120)
+++|..+++.++....+.++ .......+..+...... .....+.|....+.||+....+...+..+
T Consensus 49 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~---~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 49 VILDIEMPGISGLEVAGEIR---KKKKDAKIILLTAYSHY---RSDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp EEECSCCSSSCHHHHHHHHH---HHCTTCCEEEEESCGGG---GGCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH---ccCCCCeEEEEECCcch---HHHHHhccccceEECCCCHHHHHHHHHHH
Confidence 88999888877643333332 22222333333332211 14455677788899999999888776553
No 246
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=68.70 E-value=50 Score=31.07 Aligned_cols=118 Identities=9% Similarity=0.122 Sum_probs=70.9
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.+.....+..+..++.. +..+..+.....+...+. ...|+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~---------------------------------~~~~~d 50 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIK---------------------------------KSDPFS 50 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHH---------------------------------HSCCCS
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHH---------------------------------cCCCCC
Confidence 3466777777777777777764 655555544433332221 123568
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+.++..+.+.++ .......+..+ ..........+..+.| ...++.||+....+...+..+...
T Consensus 51 lvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 51 VIMVDMRMPGMEGTEVIQKAR---LISPNSVYLML-TGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEEESCCSSSCHHHHHHHHH---HHCSSCEEEEE-ECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHH---hcCCCcEEEEE-ECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999999887644333333 22222222222 2222223344555667 788999999999999988877653
No 247
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=67.62 E-value=66 Score=28.43 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=67.7
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEE
Q 001222 718 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 797 (1120)
Q Consensus 718 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 797 (1120)
+++.......+..+...+...|..+..+.........+. ..+..++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~----------------------------------~~~~dlv 49 (120)
T 2a9o_A 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE----------------------------------AEQPDII 49 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HHCCSEE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH----------------------------------hCCCCEE
Confidence 556666777777788888877766555444333222211 1134678
Q ss_pred EEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 798 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 798 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++|..+++.++....+.++ .. ....+..+ .............+.|..-++.||+....+...+..+..
T Consensus 50 l~D~~l~~~~g~~~~~~l~---~~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 50 ILDLMLPEIDGLEVAKTIR---KT-SSVPILML-SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EECSSCSSSCHHHHHHHHH---HH-CCCCEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHH---hC-CCCCEEEE-ecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 8899888877643333333 21 12222233 222333344455677888899999999999888776543
No 248
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=67.47 E-value=67 Score=28.48 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=69.0
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEE
Q 001222 718 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 797 (1120)
Q Consensus 718 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 797 (1120)
+++.......+..+...+...|..+..+.........+. ..+..++
T Consensus 3 ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~----------------------------------~~~~dli 48 (121)
T 2pl1_A 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN----------------------------------EHIPDIA 48 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSEE
T ss_pred EEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh----------------------------------ccCCCEE
Confidence 455666677777788888877776655544433322221 1234678
Q ss_pred EEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 798 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 798 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++|..+++.++....+.++ .......+..+ .............+.|..-++.||+....+...+..+..
T Consensus 49 l~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 49 IVDLGLPDEDGLSLIRRWR---SNDVSLPILVL-TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp EECSCCSSSCHHHHHHHHH---HTTCCSCEEEE-ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHH---hcCCCCCEEEE-ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 8899888877643333322 22222223333 333333444566678888899999999999888776653
No 249
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=67.32 E-value=60 Score=29.23 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=69.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
.+++.......+..+...+...|. .+..+.........+ ...+..
T Consensus 6 ~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~----------------------------------~~~~~d 51 (128)
T 1jbe_A 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----------------------------------QAGGYG 51 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH----------------------------------TTCCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH----------------------------------HhcCCC
Confidence 466677777777788888887776 344443332222111 012357
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++|..++++++....+.++..... .... ..+..............+.|...++.||+....+...+..+..
T Consensus 52 lvi~D~~l~~~~g~~l~~~l~~~~~~-~~~~-ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 52 FVISDWNMPNMDGLELLKTIRAXXAM-SALP-VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEEEESCCSSSCHHHHHHHHHC--CC-TTCC-EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhccc-CCCc-EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 88899999988764433333321111 1122 2333333333444556678888999999999999888876653
No 250
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=67.13 E-value=31 Score=32.25 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=76.1
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcC-ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhcc-
Q 001222 714 PNTVVVLATVGSMERMIISQWLRKKK-VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI- 791 (1120)
Q Consensus 714 ~~~~v~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 791 (1120)
....+++.......+..+..++...| ..+..+........ ... ..
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~--------------------------------~~~-~~~ 65 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIV--------------------------------QRT-DGL 65 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHT--------------------------------TCH-HHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHH--------------------------------HHH-hcC
Confidence 35578888888888899999999888 66655443321110 000 01
Q ss_pred CCcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 792 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 792 ~p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
.+..++++|..+.+.++....+.++ ....... ..+..............+.|...++.||+....+...+..+..+
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~-ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLS---RLHPGLT-CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHH---HHCTTCE-EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHH---HhCCCCc-EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3567889999888866543333322 2222222 33333334444555666788888999999999999988887653
No 251
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=66.18 E-value=63 Score=34.86 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=59.1
Q ss_pred HHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe---CCCCCCCHHHHHHHHHh
Q 001222 980 ACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMPKMDGYEATIEIRK 1055 (1120)
Q Consensus 980 l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD---~~MP~mdG~e~~~~IR~ 1055 (1120)
+.....++|..+. .+.+.+|+..+++. ..|+|-.- ...... +++.++++++
T Consensus 154 l~~~a~~lGl~~lvev~t~ee~~~A~~~------------------------Gad~IGv~~r~l~~~~~-dl~~~~~l~~ 208 (272)
T 3qja_A 154 MLDRTESLGMTALVEVHTEQEADRALKA------------------------GAKVIGVNARDLMTLDV-DRDCFARIAP 208 (272)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHH------------------------TCSEEEEESBCTTTCCB-CTTHHHHHGG
T ss_pred HHHHHHHCCCcEEEEcCCHHHHHHHHHC------------------------CCCEEEECCCccccccc-CHHHHHHHHH
Confidence 3445566888754 57888887665532 46777664 222222 3667778876
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1056 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1056 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..+ .++|+|+-.+-.+.++..++.++|+|+++.
T Consensus 209 ~v~----~~~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 209 GLP----SSVIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp GSC----TTSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hCc----ccCEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 432 258999999989999999999999999997
No 252
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=65.81 E-value=6.9 Score=37.12 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=68.8
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
...++++++....+..+...++..|..+. .++...+....++ ..+
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~----------------------------------~~~ 53 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR----------------------------------KGQ 53 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH----------------------------------HCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----------------------------------hCC
Confidence 34578888888889999999999888754 3444333322221 235
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHH
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLET 867 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~ 867 (1120)
++++++|+.++++++....+.++.. .. ...+.+...... ...+.|..-++.||+....+...+..
T Consensus 54 ~DlvllDi~mP~~~G~el~~~lr~~-----~i-pvI~lTa~~~~~---~~~~~g~~~yl~KP~~~~~L~~~l~~ 118 (123)
T 2lpm_A 54 FDIAIIDVNLDGEPSYPVADILAER-----NV-PFIFATGYGSKG---LDTRYSNIPLLTKPFLDSELEAVLVQ 118 (123)
T ss_dssp SSEEEECSSSSSCCSHHHHHHHHHT-----CC-SSCCBCTTCTTS---CCSSSCSCSCBCSSSSHHHHHHHHST
T ss_pred CCEEEEecCCCCCCHHHHHHHHHcC-----CC-CEEEEecCccHH---HHHhCCCCcEEECCCCHHHHHHHHHH
Confidence 6899999999999986655555431 11 122222221111 12234555679999999988876644
No 253
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=65.78 E-value=62 Score=30.37 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=72.8
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRK-KKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.......+..+..++.. .|..+. .+.....+...+. ..+
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~----------------------------------~~~ 51 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR----------------------------------ETT 51 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH----------------------------------TTC
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh----------------------------------cCC
Confidence 4567777778888888888887 676655 4444433332221 123
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
..++++|..+.+.++..+.+.++ .......+..+ .............+.|...++.||+....+...+..+..+
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~l~---~~~~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEATRHIR---QWDGAARILIF-TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHH---HHCTTCCEEEE-ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHH---HhCCCCeEEEE-ECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 56888898888776543333322 22222223333 3333334455666788899999999999999988877653
No 254
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.77 E-value=77 Score=29.16 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=75.7
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.......+..+...+...|. .+..+.........+........ .....+
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~------------------------~~~~~~ 62 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCN------------------------PDIAPR 62 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSC------------------------GGGCCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccC------------------------cccCCC
Confidence 4577778888888888999998886 55555554444333221000000 000034
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
..++++|..+.+.++....+.++..... ....+..+ .............+.|...++.||+....+...+..+..
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~-t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQEIKQDEVL-KKIPVVIM-TTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHTTSTTG-GGSCEEEE-ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhCccc-CCCeEEEE-eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5788899988887764433333322111 12222233 333333444556678888999999999999988887764
No 255
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=65.69 E-value=55 Score=37.43 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=67.0
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 964 GLRILLAE----DTPLIQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 964 ~~~ILIVd----D~~~n~~~l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
+..++++| +.......++.+-+..+..|. .+.+.++|..+.+. ..|.|..
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a------------------------GAD~I~v 211 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN------------------------GADGIKV 211 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc------------------------CCCEEEE
Confidence 55677764 222334444444444476665 47888888887753 5788887
Q ss_pred eCC------C-----CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1038 DCQ------M-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1038 D~~------M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-.. . .....++++.++++.... .++|||+--+-.+..+..+++.+|||..+.
T Consensus 212 G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~---~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 212 GIGPGSICTTRIVAGVGVPQITAIEKCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp CC---------CCSCBCCCHHHHHHHHHHHHTT---TTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred eCCCCcCcccccccccchhHHHHHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 311 0 012346777777754321 359999988888999999999999998763
No 256
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=65.37 E-value=61 Score=34.55 Aligned_cols=113 Identities=10% Similarity=0.055 Sum_probs=75.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+.+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..||+|.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~-----------------------~~~d~V~ 179 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK-----------------------EKPIMLT 179 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH-----------------------HCCSEEE
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4578887 777788889999999999998643 345566666654 2799999
Q ss_pred EeCCCCC-CCH-HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1037 MDCQMPK-MDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1037 mD~~MP~-mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
+-+.|+. +.. -++.+++|+.. .++||++--+.... +. +-+.|+|.|-. +..+....+.+++..
T Consensus 180 lS~l~~~~~~~~~~~i~~l~~~~-----~~~~v~vGG~~~~~-~~--~~~igad~~~~---da~~av~~~~~l~~~ 244 (258)
T 2i2x_B 180 GTALMTTTMYAFKEVNDMLLENG-----IKIPFACGGGAVNQ-DF--VSQFALGVYGE---EAADAPKIADAIIAG 244 (258)
T ss_dssp EECCCTTTTTHHHHHHHHHHTTT-----CCCCEEEESTTCCH-HH--HHTSTTEEECS---STTHHHHHHHHHHTT
T ss_pred EEeeccCCHHHHHHHHHHHHhcC-----CCCcEEEECccCCH-HH--HHHcCCeEEEC---CHHHHHHHHHHHHcc
Confidence 9998764 332 34666777532 24777765554443 33 34789988865 445555666666643
No 257
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=65.21 E-value=54 Score=30.28 Aligned_cols=117 Identities=10% Similarity=0.127 Sum_probs=72.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+...+...|..+..+.........+. ..+..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~d 50 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR----------------------------------REKID 50 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT----------------------------------TSCCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh----------------------------------ccCCC
Confidence 35677777888888889999888877665555443332221 12456
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|. +.+.++. +.+..+........+.. ..............+.|...++.||+....+...+..+..+
T Consensus 51 lvi~d~-~~~~~g~---~~~~~l~~~~~~~pii~-ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 51 LVFVDV-FEGEESL---NLIRRIREEFPDTKVAV-LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEEEEC-TTTHHHH---HHHHHHHHHCTTCEEEE-EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EEEEeC-CCCCcHH---HHHHHHHHHCCCCCEEE-EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 788888 7665432 22222222222222333 33333344455666788888999999999999988887653
No 258
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=65.04 E-value=51 Score=40.56 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=80.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
..+|+++ |.+..-..++..+|+..||+|+--. ..++.++.+.+ ..+|+|.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------------------~~adiVg 652 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-----------------------ADVHVVG 652 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4578876 5666677788889999999998642 45777777754 3799999
Q ss_pred EeCCCCC-CC-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1037 MDCQMPK-MD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1037 mD~~MP~-md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+-..|.. |. .-++.+.+|+.. ..+++|+ +-+-.-.++...+.+.|+|+|..---+..++...+...++
T Consensus 653 lSsl~~~~~~~~~~vi~~L~~~G----~~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 653 VSSLAGGHLTLVPALRKELDKLG----RPDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTT----CTTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred EeeecHhHHHHHHHHHHHHHhcC----CCCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 9887752 22 245566666542 2345444 4443444566778999999999866677777777766553
No 259
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=63.79 E-value=55 Score=29.55 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=68.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
.+++.......+..+...+...|. .+..+.........+. ..+..
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~----------------------------------~~~~d 53 (129)
T 1p6q_A 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA----------------------------------QNPHH 53 (129)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH----------------------------------TSCCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH----------------------------------cCCCC
Confidence 466777777778888888887765 3333333322222111 12456
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++|..+++.++....+.++..... .... ..+..............+.|...++.||+....+...+..+..
T Consensus 54 lvl~D~~l~~~~g~~~~~~l~~~~~~-~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 54 LVISDFNMPKMDGLGLLQAVRANPAT-KKAA-FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEEECSSSCSSCHHHHHHHHTTCTTS-TTCE-EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCccc-cCCC-EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 88899999888764433333221111 1122 2233333333344456677888899999999999888876543
No 260
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=62.84 E-value=49 Score=33.11 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.++....+..+...+...|..+..+......... + ...+.+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~---~-------------------------------~~~~~d 50 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEH---R-------------------------------RPEQHG 50 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHH---C-------------------------------CTTSCE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHh---h-------------------------------hccCCC
Confidence 356777888888888888888877766554443322211 0 113457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++++|+.+++.++....+.++. ......+..+..+. .........+.|...++.||+....+...+..+..
T Consensus 51 lvl~D~~lp~~~g~~~~~~l~~---~~~~~~ii~ls~~~-~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 51 CLVLDMRMPGMSGIELQEQLTA---ISDGIPIVFITAHG-DIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp EEEEESCCSSSCHHHHHHHHHH---TTCCCCEEEEESCT-TSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCCCCEEEEeCCC-CHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 8999999998876443333322 22223333333333 23334455667888899999999999888877654
No 261
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=62.30 E-value=44 Score=34.32 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=71.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 965 LRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 965 ~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
.+||++ |-+..-..++..+|+..||+|.... ..++.++.+.+ ..||+|.+
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~-----------------------~~~d~v~l 145 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK-----------------------YQPDIVGM 145 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH-----------------------HCCSEEEE
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 478888 7778888899999999999998643 34555555543 27999999
Q ss_pred eCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1038 DCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1038 D~~MP~m-d-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
-..|+.- + --++.+.+|+... .+++||++--+..+.+ . +.+.|+|.|-. +..+......++
T Consensus 146 S~~~~~~~~~~~~~i~~l~~~~~---~~~~~v~vGG~~~~~~-~--~~~~gad~~~~---da~~av~~~~~l 208 (210)
T 1y80_A 146 SALLTTTMMNMKSTIDALIAAGL---RDRVKVIVGGAPLSQD-F--ADEIGADGYAP---DAASATELCRQL 208 (210)
T ss_dssp ECCSGGGTHHHHHHHHHHHHTTC---GGGCEEEEESTTCCHH-H--HHHHTCSEECS---SHHHHHHHHHHH
T ss_pred eccccccHHHHHHHHHHHHhcCC---CCCCeEEEECCCCCHH-H--HHHcCCeEEEC---CHHHHHHHHHHH
Confidence 9987642 2 2345566665321 1247777655555432 2 35679998764 444444444433
No 262
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=62.29 E-value=42 Score=31.72 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.......+..+...+...|..+..+.........+ ...+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l----------------------------------~~~~~d 49 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL----------------------------------SADFAG 49 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC----------------------------------CTTCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH----------------------------------HhCCCC
Confidence 3466777777788888888888887766555433322110 012457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+.+.++....+.+. .......+..+... ..........+.|...++.||+....+...+..+...
T Consensus 50 liild~~l~~~~g~~~~~~l~---~~~~~~pii~ls~~-~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 50 IVISDIRMPGMDGLALFRKIL---ALDPDLPMILVTGH-GDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEEEESCCSSSCHHHHHHHHH---HHCTTSCEEEEECG-GGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH---hhCCCCCEEEEECC-CChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 888999888876643333332 22222333333322 2233445566788889999999999999888877653
No 263
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=61.86 E-value=70 Score=32.90 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=73.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...|..+..+.........+.. .+.++
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dl 52 (238)
T 2gwr_A 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE----------------------------------LRPDL 52 (238)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 46777788888888888888878766655544433322211 13468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+++.++....+.++. .. ...+..+.. ...........+.|...++.||+....+...+..+..+
T Consensus 53 vilD~~l~~~~g~~~~~~lr~---~~-~~~ii~lt~-~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 53 VLLDLMLPGMNGIDVCRVLRA---DS-GVPIVMLTA-KTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEESSCSSSCHHHHHHHHHT---TC-CCCEEEEEE-TTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHh---CC-CCcEEEEeC-CCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999998876443333332 12 222333333 23333444566788889999999999999988877653
No 264
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=61.56 E-value=37 Score=40.81 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=77.3
Q ss_pred CcEEEEE----eCCHHHHHHH----HHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCc
Q 001222 964 GLRILLA----EDTPLIQIVA----CKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF 1032 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l----~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1120)
..+|+++ |=+..-..++ ..+|+..||+|+-. ...++.++++.+ ..+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E-----------------------edA 658 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE-----------------------LKA 658 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH-----------------------TTC
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------------------cCC
Confidence 5689988 4444444333 46899999999754 356777777754 379
Q ss_pred cEEEEeCCCCC----CCHH-HHHHHHHhcccccCCC-CcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 001222 1033 DLILMDCQMPK----MDGY-EATIEIRKSESEHGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1106 (1120)
Q Consensus 1033 DlILmD~~MP~----mdG~-e~~~~IR~~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~ 1106 (1120)
|+|.+-+.|.. |... ++.+.+|+.. .. .+||++ -+..-..+ -+.+.|+|.|..-.....++...+..
T Consensus 659 DVVGLSsLLTt~dihL~~MkevIelLrE~G----lrDkIkVIV-GGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 659 DAILASTIISHDDIHYKNMKRIHELAVEKG----IRDKIMIGC-GGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVK 731 (763)
T ss_dssp SEEEEECCCCGGGHHHHHHHHHHHHHHHTT----CTTTSEEEE-ECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred CEEEEeccccCchhhHHHHHHHHHHHHhcC----CCCCCEEEE-ECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHH
Confidence 99999998886 3433 3445566532 22 355554 44433333 35589999999888888888777766
Q ss_pred Hhhc
Q 001222 1107 LTKN 1110 (1120)
Q Consensus 1107 l~~~ 1110 (1120)
.++.
T Consensus 732 ~l~e 735 (763)
T 3kp1_A 732 KRRE 735 (763)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 265
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=61.45 E-value=65 Score=32.73 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=73.9
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.+.....+..+...+...|..+..+.........+. ..+.+
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------------------------------~~~~d 53 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT----------------------------------ENRPD 53 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH----------------------------------hCCCC
Confidence 35777788888888888888888876665554433322221 12457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|..+++.++....+.+. .......+..+... ..........+.|...++.||+....+...+..+..+
T Consensus 54 lvllD~~l~~~~g~~~~~~l~---~~~~~~~ii~lt~~-~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 54 AIVLDINMPVLDGVSVVTALR---AMDNDVPVCVLSAR-SSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEEEESSCSSSCHHHHHHHHH---HTTCCCCEEEEECC-CTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEEcC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 889999998887643333332 22222223333322 2233334555678888999999999999988887654
No 266
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=61.38 E-value=1.1e+02 Score=34.64 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVd----D~~~n~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..++++| +.+.....++.+-+.. +..|. .+.+.++|..+.+. ..|.|.
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a------------------------GAD~I~ 175 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------------------GVSAVK 175 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc------------------------CCCEEE
Confidence 45677775 3333344444444444 55554 47889998887753 578888
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.-+. |+ ...++++..+++.... .++|||+--+-.+..+..+++.+|||....
T Consensus 176 vG~g-pGs~~~tr~~~g~g~p~~~~l~~v~~~~~~---~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 176 VGIG-PGSICTTRIVTGVGVPQITAIADAAGVANE---YGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp ECSS-CSTTBCHHHHHCCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EecC-CCCCCCcccccCcccchHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 7321 21 2356677777653222 259999988888899999999999998864
No 267
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=60.74 E-value=89 Score=27.56 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=67.2
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEE
Q 001222 718 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 797 (1120)
Q Consensus 718 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 797 (1120)
+++.......+..+...+...|..+..+.........+. ..+..++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dlv 49 (121)
T 1zh2_A 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA----------------------------------TRKPDLI 49 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HHCCSEE
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh----------------------------------cCCCCEE
Confidence 556666777777788888877766554443222211110 1134688
Q ss_pred EEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 798 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 798 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++|..+++.++....+.++ .. ....+.+ ..............+.|...++.||+....+...+..+..
T Consensus 50 i~D~~l~~~~g~~~~~~l~---~~-~~~~ii~-~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 50 ILDLGLPDGDGIEFIRDLR---QW-SAVPVIV-LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp EEESEETTEEHHHHHHHHH---TT-CCCCEEE-EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHH---hC-CCCcEEE-EECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 8999998876643333332 11 1222223 3333333344556678888999999999999888876654
No 268
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=60.73 E-value=1.1e+02 Score=30.91 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=69.1
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhcCCEEEEE----CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 964 GLRILLAEDTP--LIQIVACKILEKVGATVSVV----PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 964 ~~~ILIVdD~~--~n~~~l~~~L~~~g~~v~~a----~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
|...+++-+.+ .....+...+++.|..+... .+..+.++.+.+ ...|+|-+
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-----------------------~g~d~i~v 133 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-----------------------AGADMLAV 133 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-----------------------HTCCEEEE
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 33445555544 33345566677788877653 333233333322 14788877
Q ss_pred eCCCCCC-------CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHH
Q 001222 1038 DCQMPKM-------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTIL 1105 (1120)
Q Consensus 1038 D~~MP~m-------dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~ 1105 (1120)
+ |+. .+.+.++++|+.. .++||++--+- ..++..+++++|+|.++. +.-++.+....+.
T Consensus 134 ~---~g~~g~~~~~~~~~~i~~l~~~~-----~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~ 204 (211)
T 3f4w_A 134 H---TGTDQQAAGRKPIDDLITMLKVR-----RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKIS 204 (211)
T ss_dssp E---CCHHHHHTTCCSHHHHHHHHHHC-----SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHH
T ss_pred c---CCCcccccCCCCHHHHHHHHHHc-----CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHH
Confidence 6 332 3577888888752 24788765554 478889999999999875 5556666555555
Q ss_pred HHhh
Q 001222 1106 RLTK 1109 (1120)
Q Consensus 1106 ~l~~ 1109 (1120)
+.++
T Consensus 205 ~~~~ 208 (211)
T 3f4w_A 205 QVLL 208 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 269
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=59.87 E-value=56 Score=30.17 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=67.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...|..+..+.........+. ..+.++
T Consensus 12 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~----------------------------------~~~~dl 57 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ----------------------------------NRQFDV 57 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 5677777777788888888777665544443332222111 123578
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhh--ccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFH--RKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+++.++..+.+.++...... ....+..+..... ... ..+.|...++.||+....+...+..+..+
T Consensus 58 vllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~-~~~---~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 58 IIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTI-DDD---RPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCC-SCC---CCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccc-hhH---HHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 89999998887654444433221111 1122222222211 111 11566778899999999999988887653
No 270
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=59.86 E-value=71 Score=32.25 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=72.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.++....+..+...+...|..+..+.........+. ..+.++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 49 (225)
T 1kgs_A 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL----------------------------------NEPFDV 49 (225)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 4667777777788888888887776655544333222211 124578
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+++.++....+.++ .......+.. ..............+.|...++.||+....+...+..+..+
T Consensus 50 vllD~~l~~~~g~~~~~~lr---~~~~~~~ii~-ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 50 VILDIMLPVHDGWEILKSMR---ESGVNTPVLM-LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp EEEESCCSSSCHHHHHHHHH---HTTCCCCEEE-EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH---hcCCCCCEEE-EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 89999999887643333332 2222222222 33222233445566788889999999999999988887654
No 271
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=59.66 E-value=61 Score=33.87 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=76.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..+++.++....+..+...+...+..+..+.........+. ..+.+
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~D 83 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR----------------------------------EDHPD 83 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HSCCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh----------------------------------cCCCC
Confidence 45778888888888888888888876665554443322221 12457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
++++|+.+++.++..+.+.++ ..+ ... ..+...........+..+.|..-++.||+....+...+..+..+
T Consensus 84 lvllD~~lp~~~G~~l~~~lr---~~~-~~~-iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 84 LILLDLGLPDFDGGDVVQRLR---KNS-ALP-IIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp EEEEECCSCHHHHHHHHHHHH---TTC-CCC-EEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEEEcCCCCCCCHHHHHHHHH---cCC-CCC-EEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 889999988876543333333 211 222 23333334444555667788999999999999999998887754
No 272
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=59.26 E-value=1.1e+02 Score=28.07 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=45.3
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+..++++|..++++++....+.++ .......+..+............+...|...++.||+....+...+..+..
T Consensus 44 ~~dlvl~D~~lp~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 44 WVQVIICDQRMPGRTGVDFLTEVR---ERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp CEEEEEEESCCSSSCHHHHHHHHH---HHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 468899999999887643333332 222223333333333332333333344577899999999999988877654
No 273
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=58.54 E-value=1.1e+02 Score=27.71 Aligned_cols=117 Identities=11% Similarity=0.173 Sum_probs=69.0
Q ss_pred EEEEeecChhhHHHHHHHHHhc-Cceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 717 VVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
.+++.......+..+..++... +.... .+.........+.. .+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~----------------------------------~~~ 49 (130)
T 1dz3_A 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE----------------------------------KRP 49 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc----------------------------------CCC
Confidence 3566677777777888888776 55443 33333322222111 134
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
.++++|..+++.++....+.++.. ......+..+ .............+.|...++.||+....+...+..+..
T Consensus 50 dlvllD~~l~~~~g~~~~~~l~~~--~~~~~~ii~l-s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 50 DILLLDIIMPHLDGLAVLERIRAG--FEHQPNVIML-TAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHH--CSSCCEEEEE-EETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHhc--CCCCCcEEEE-ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 688899999888764333333221 1122223333 333333444556678888899999999999988887664
No 274
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=58.18 E-value=56 Score=34.68 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=61.1
Q ss_pred EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCc
Q 001222 993 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNI 1065 (1120)
Q Consensus 993 ~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~-------mdG~e~~~~IR~~~~~~~~~~i 1065 (1120)
.+.+.+|+..+.+ ...|+|...--.|. .-|++.++++++... .++
T Consensus 141 S~ht~~Ea~~A~~------------------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~----~~i 192 (243)
T 3o63_A 141 STHDPDQVAAAAA------------------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG----DDK 192 (243)
T ss_dssp EECSHHHHHHHHH------------------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC-------CC
T ss_pred eCCCHHHHHHHhh------------------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc----CCC
Confidence 5688888877664 26899988543332 237888888886411 258
Q ss_pred ceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhh
Q 001222 1066 PIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1066 pIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~ 1109 (1120)
|||++.+- ..++..+++++|+|.+.. +.-++..-...+.+.++
T Consensus 193 PvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~ 240 (243)
T 3o63_A 193 PWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALT 240 (243)
T ss_dssp CEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred CEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 99999887 677889999999999985 44466665555555543
No 275
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=57.84 E-value=66 Score=39.79 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=80.0
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
..+|+++ |.+..-..++..+|+..||+|+-- ...++.++++.+ ..+|+|.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------------------~~adiVg 660 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD-----------------------ADVHAVG 660 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3577775 456666778888999999999864 245777777654 3799999
Q ss_pred EeCCCCC-CC-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1037 MDCQMPK-MD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1037 mD~~MP~-md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+-..|.. |. .-++.+.+|+.. ..+++|+ +-+-.-..+...+.+.|+|+|...--+..+....+.+.++
T Consensus 661 lSsl~~~~~~~~~~vi~~Lr~~G----~~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 661 VSTLAAGHKTLVPELIKELNSLG----RPDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTT----CTTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred EeeecHHHHHHHHHHHHHHHhcC----CCCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHH
Confidence 9877742 22 244556666542 2345444 4443334466778899999999865688777777777663
No 276
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=57.73 E-value=76 Score=31.64 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=73.6
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
..+++.......+..+...+...|..+. .+.........+.. .+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~----------------------------------~~~ 59 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL----------------------------------HKP 59 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----------------------------------cCC
Confidence 4677888888888889999988887665 44444333322211 134
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++++|+.++++++..+.+.+.. .... .+..+.. ...........+.|...++.||+....+...+..+..
T Consensus 60 dlvi~D~~~p~~~g~~~~~~l~~---~~~~-pii~lt~-~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 60 DLVIMDVKMPRRDGIDAASEIAS---KRIA-PIVVLTA-FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp SEEEEESSCSSSCHHHHHHHHHH---TTCS-CEEEEEE-GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCChHHHHHHHHh---cCCC-CEEEEec-CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 68899999998877544333332 1111 2222222 2223344456678888899999999999988877664
No 277
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.62 E-value=33 Score=35.69 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=66.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
..+||+. |-+..-..++..+|+..||+|.--. ..++.++.+.+ ..||+|.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~-----------------------~~~d~v~ 148 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK-----------------------HKGEKVL 148 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH-----------------------TTTSCEE
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3478887 7778888889999999999987643 45566666654 3799999
Q ss_pred E--eCCCCC-CC-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 M--DCQMPK-MD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 m--D~~MP~-md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+ -+.|.. ++ --++.+.+|+.... .++||++--+-... + -|-+.|+|.|-.
T Consensus 149 l~~S~l~~~~~~~~~~~i~~l~~~~~~---~~v~v~vGG~~~~~-~--~a~~iGad~~~~ 202 (215)
T 3ezx_A 149 LVGSALMTTSMLGQKDLMDRLNEEKLR---DSVKCMFGGAPVSD-K--WIEEIGADATAE 202 (215)
T ss_dssp EEEECSSHHHHTHHHHHHHHHHHTTCG---GGSEEEEESSSCCH-H--HHHHHTCCBCCS
T ss_pred EEchhcccCcHHHHHHHHHHHHHcCCC---CCCEEEEECCCCCH-H--HHHHhCCeEEEC
Confidence 9 887742 22 23455666654211 25777665544443 3 345679999864
No 278
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=57.20 E-value=80 Score=33.90 Aligned_cols=116 Identities=6% Similarity=0.039 Sum_probs=74.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HHhc-CCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCC
Q 001222 964 GLRILLA----EDTPLIQIVACKI--------LEKV-GATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1027 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~--------L~~~-g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1120)
..+|+++ |-+.+-..++..+ |+.. ||+|.-. -..++.++++.+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--------------------- 178 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--------------------- 178 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH---------------------
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH---------------------
Confidence 3477775 6666666677777 9999 9998753 345566666654
Q ss_pred CCCCccEEEEeCCCCC----CCH-HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHH
Q 001222 1028 DTPRFDLILMDCQMPK----MDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1102 (1120)
Q Consensus 1028 ~~~~~DlILmD~~MP~----mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~ 1102 (1120)
..+|+|.+-+.|.. ++. -++.+.+|+... ..++||++ -+... +...+.+.|+|.|..--....++..
T Consensus 179 --~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~---~~~i~viv-GG~~~--~~~~a~~iGad~~~~da~~~~~~a~ 250 (262)
T 1xrs_B 179 --LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGL---RDRFVLLC-GGPRI--NNEIAKELGYDAGFGPGRFADDVAT 250 (262)
T ss_dssp --TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTC---GGGSEEEE-ECTTC--CHHHHHTTTCSEEECTTCCHHHHHH
T ss_pred --cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCC---CCCCEEEE-ECCcC--CHHHHHHcCCeEEECCchHHHHHHH
Confidence 37999999999985 222 234455554321 12366654 44333 2344778999999877777777776
Q ss_pred HHHHHh
Q 001222 1103 TILRLT 1108 (1120)
Q Consensus 1103 ~I~~l~ 1108 (1120)
.+...+
T Consensus 251 ~l~~~~ 256 (262)
T 1xrs_B 251 FAVKTL 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 279
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=56.14 E-value=70 Score=29.41 Aligned_cols=118 Identities=11% Similarity=0.181 Sum_probs=64.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+..++... ..+..+.........+.. .+..+
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 49 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH----------------------------------HHPDL 49 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 4667777777778888888766 544444443333322211 23468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+.+.++..+.+.++..... ....+..+ ..........+..+.|...++.||+....+...+..+..+
T Consensus 50 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 50 VILDMDIIGENSPNLCLKLKRSKGL-KNVPLILL-FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEEETTC------CHHHHHHTSTTC-TTCCEEEE-ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHcCccc-CCCCEEEE-ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 8899888887664433333322111 12222222 2222223334556778888999999999999998887654
No 280
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=55.20 E-value=1.2e+02 Score=30.37 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=71.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcC-cee-eeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 717 VVVLATVGSMERMIISQWLRKKK-VST-LETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
.+++.++....+..+..++...+ ..+ ..+.........+.. .+.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~----------------------------------~~~ 52 (215)
T 1a04_A 7 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES----------------------------------LDP 52 (215)
T ss_dssp EEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh----------------------------------cCC
Confidence 46777777778888888887754 444 334433332222111 134
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++++|+.++++++....+.++. ......+ .+..............+.|...++.||+....+...+..+..+
T Consensus 53 dlvllD~~lp~~~g~~~~~~lr~---~~~~~~i-i~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 53 DLILLDLNMPGMNGLETLDKLRE---KSLSGRI-VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp SEEEEETTSTTSCHHHHHHHHHH---SCCCSEE-EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCcHHHHHHHHHH---hCCCCcE-EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 78899999998876443333322 1122222 2333333334445566788899999999999999998887764
No 281
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=54.35 E-value=73 Score=34.38 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC---CCCCCHHHHHHHHH
Q 001222 979 VACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---MPKMDGYEATIEIR 1054 (1120)
Q Consensus 979 ~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~---MP~mdG~e~~~~IR 1054 (1120)
.+......+|..+. .+.|.+|+..++. ..+|+|=.--. --..| ++.+.++.
T Consensus 160 ~l~~~a~~lGl~~lvevh~~eEl~~A~~------------------------~ga~iIGinnr~l~t~~~d-l~~~~~L~ 214 (272)
T 3tsm_A 160 ELEDTAFALGMDALIEVHDEAEMERALK------------------------LSSRLLGVNNRNLRSFEVN-LAVSERLA 214 (272)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHTT------------------------SCCSEEEEECBCTTTCCBC-THHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHh------------------------cCCCEEEECCCCCccCCCC-hHHHHHHH
Confidence 33444556898755 5788888766553 25777755421 11122 56677776
Q ss_pred hcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHH
Q 001222 1055 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERM 1100 (1120)
Q Consensus 1055 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L 1100 (1120)
..-+ ..+|+|+-++-.+.++..++.++|+|++|. ||-++..-
T Consensus 215 ~~ip----~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~ 261 (272)
T 3tsm_A 215 KMAP----SDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAA 261 (272)
T ss_dssp HHSC----TTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHH
T ss_pred HhCC----CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHH
Confidence 5433 258999999999999999999999999996 55555443
No 282
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=53.28 E-value=73 Score=29.21 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=67.6
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhcc-C
Q 001222 714 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI-D 792 (1120)
Q Consensus 714 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 792 (1120)
+...+++.+.....+..+...+...|..+..+.........+ . . .
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l--------------------------------~--~~~ 59 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHR--------------------------------S--QLS 59 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTG--------------------------------G--GGG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH--------------------------------H--hCC
Confidence 456688888888888888999988887665554433322111 0 1 2
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeee-ccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVV-NHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+..++++|..+.+.++....+.++. ......+..+. ....... ...+ ...++.||+....+...+..+..
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~l~~---~~~~~~ii~ls~~~~~~~~-~~~~----~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 60 TCDLLIVSDQLVDLSIFSLLDIVKE---QTKQPSVLILTTGRHELIE-SSEH----NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCSEEEEETTCTTSCHHHHHHHHTT---SSSCCEEEEEESCC--CCC-CSSS----CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEEECCCCCHHH-HHHH----HHheeeCCCCHHHHHHHHHHHHH
Confidence 3568888998888766433333322 22223333333 2222221 1111 56678999999999888877654
No 283
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=53.18 E-value=98 Score=34.97 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=73.6
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEEE
Q 001222 718 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 797 (1120)
Q Consensus 718 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 797 (1120)
+++.++....+..+...+...|..+..+.........+. ..+++++
T Consensus 3 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~----------------------------------~~~~Dlv 48 (387)
T 1ny5_A 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS----------------------------------EKHFNVV 48 (387)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH----------------------------------HSCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----------------------------------hCCCCEE
Confidence 566777777788888888888877666555444333221 1245789
Q ss_pred EEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 798 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 798 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
++|+.++++++....+.+. .......+.. ...........+..+.|..-++.||+....+...+..+..
T Consensus 49 llD~~mp~~dG~ell~~lr---~~~~~~pvIv-lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 49 LLDLLLPDVNGLEILKWIK---ERSPETEVIV-ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EEESBCSSSBHHHHHHHHH---HHCTTSEEEE-EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH---hhCCCCcEEE-EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 9999999987744333332 2222222333 3333334445566778889999999999999887776654
No 284
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=52.55 E-value=18 Score=34.77 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=30.9
Q ss_pred ccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHH
Q 001222 227 FTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMK 267 (1120)
Q Consensus 227 ~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~ 267 (1120)
....+.+.++.||++. +|+++||+.|...+..+...++
T Consensus 101 ~~~g~~~~~~~PV~~~---~g~viGvv~vg~~~~~~~~~~~ 138 (142)
T 3by8_A 101 GFLAQALRVFTPIYDE---NHKQIGVVAIGLELSRVTQQIN 138 (142)
T ss_dssp SSSSCEEEEEEEEECT---TSCEEEEEEEEEEHHHHHHHHH
T ss_pred CccEEEEEEEEeEEcC---CCCEEEEEEEeEEHHHHHHHHH
Confidence 3456788888899985 7899999999998888877654
No 285
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=51.86 E-value=29 Score=36.61 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=42.9
Q ss_pred ccEEEEeC--CCCCCCH--------------------HHHHHHHHhcccccCCCCcceEEEeccCC------HHHHHHHH
Q 001222 1032 FDLILMDC--QMPKMDG--------------------YEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCL 1083 (1120)
Q Consensus 1032 ~DlILmD~--~MP~mdG--------------------~e~~~~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l 1083 (1120)
.|.|-+|+ .=|.||| ++++++||+. .++||++++.... .+....|+
T Consensus 32 ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~------~~~pv~~~~~~~~~~~~~~~~~~~~~~ 105 (248)
T 1geq_A 32 AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH------SSTPIVLMTYYNPIYRAGVRNFLAEAK 105 (248)
T ss_dssp BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT------CCCCEEEEECHHHHHHHCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh------CCCCEEEEeccchhhhcCHHHHHHHHH
Confidence 67777773 2357776 6677888864 2478988874222 56778899
Q ss_pred HcCCCEEEECCCCHHH
Q 001222 1084 GVGMNAYLTKPIDSER 1099 (1120)
Q Consensus 1084 ~aG~d~yL~KPi~~~~ 1099 (1120)
++|+|..+.=....++
T Consensus 106 ~~Gad~v~~~~~~~~~ 121 (248)
T 1geq_A 106 ASGVDGILVVDLPVFH 121 (248)
T ss_dssp HHTCCEEEETTCCGGG
T ss_pred HCCCCEEEECCCChhh
Confidence 9999999985444433
No 286
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=51.59 E-value=84 Score=29.42 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=64.7
Q ss_pred EEEEeecChhhHHHHHHHHHhc-Cc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 717 VVVLATVGSMERMIISQWLRKK-KV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
.+++.......+..+...+... |. .+..+.........+.. ..+.
T Consensus 5 ~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~---------------------------------~~~~ 51 (154)
T 2qsj_A 5 VVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA---------------------------------DNTV 51 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT---------------------------------TCCC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc---------------------------------cCCC
Confidence 4667777777788888888876 65 34444444433322211 1245
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
.++++|..+.+.++....+.++ .......+..+. ............+.|...++.||+....+...+..+..+
T Consensus 52 dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~ls-~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 52 DLILLDVNLPDAEAIDGLVRLK---RFDPSNAVALIS-GETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp SEEEECC------CHHHHHHHH---HHCTTSEEEEC------CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCchHHHHHHHH---HhCCCCeEEEEe-CCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 6888888887766533333222 222222233332 223334445566788888899999999999998887654
No 287
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=51.09 E-value=63 Score=32.81 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=41.6
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~-------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|.|+++--.|. ..|++.++++++.. ++||++.-+-. .++..+++++|+|.+..
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV------KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC------SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC------CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 5899998754453 35788888888642 58988876655 78888899999999853
No 288
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=51.09 E-value=23 Score=38.08 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
+.+.++++|+. .++|||+-.+-.+.++..+++++|+|+++.=
T Consensus 166 ~~~~l~~i~~~------~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 166 NPLNLSFIIEQ------AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CHHHHHHHHHH------CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHhc------CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 47788888863 2589999998888999999999999999863
No 289
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=49.11 E-value=56 Score=34.95 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=49.9
Q ss_pred CccEEEEeCCC--CCCCH--------------------HHHHHHHHhcccccCCCCcceEEEeccC------CHHHHHHH
Q 001222 1031 RFDLILMDCQM--PKMDG--------------------YEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKC 1082 (1120)
Q Consensus 1031 ~~DlILmD~~M--P~mdG--------------------~e~~~~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~ 1082 (1120)
..|+|-+++-. |.+|| +++++++|+.. +++||++++-.. .......|
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~-----~~~Pi~~m~y~n~v~~~g~~~f~~~~ 118 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEF-----PDIPFLLMTYYNPIFRIGLEKFCRLS 118 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----TTSCEEEECCHHHHHHHCHHHHHHHH
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-----CCCCEEEEecCcHHHHhhHHHHHHHH
Confidence 58999987633 33444 35577777541 258999986432 14566789
Q ss_pred HHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1083 LGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1083 l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
.++|+|+++.=.+..+++...+..+-
T Consensus 119 ~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 119 REKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999999998888887766655543
No 290
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=49.01 E-value=1.6e+02 Score=27.27 Aligned_cols=126 Identities=8% Similarity=0.045 Sum_probs=71.8
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.+.....+..+...+...+. .+..+.........+.... .......
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~---------------------------~~~~~~~ 61 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG---------------------------EYENSPR 61 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG---------------------------GGTTCCC
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc---------------------------ccccCCC
Confidence 3567778888888888888887664 3444443332222211000 0000123
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
..++++|+.++++++....+.++..... ....+ .+...........+..+.|....+.||+....+...+..+..
T Consensus 62 ~dlillD~~lp~~~g~~l~~~l~~~~~~-~~~pi-iils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGREVLAEIKQNPDL-KRIPV-VVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHCTTT-TTSCE-EEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhCcCc-CCCeE-EEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 5788999999988764433333321111 12222 233333333344556678888999999999999988877654
No 291
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=48.07 E-value=61 Score=33.37 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=40.4
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~-------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|+++-..|. .-|++.++++++.. ++||++.-+- +.++..+++++|+|.+..
T Consensus 130 gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~------~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 130 DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI------SIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp TCSEEEEECCC----------CHHHHHHHHHHHC------CSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC------CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5899988754332 23677888887532 5899988777 788999999999998775
No 292
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=46.69 E-value=95 Score=30.64 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=69.9
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
+..+++.......+..+...+...|..+..+..... ....+.
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~--------------------------------------al~~~~ 53 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPE--------------------------------------AFDVPV 53 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCS--------------------------------------SCSSCC
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchh--------------------------------------hCCCCC
Confidence 446778888888888888888877766554322110 001245
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++++|+.++++++. ..+.+.. ......+ .+..............+.|..-++.||+....+...+..+..
T Consensus 54 dlvl~D~~mp~~~g~-l~~~~~~---~~~~~~i-i~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 54 DVVFTSIFQNRHHDE-IAALLAA---GTPRTTL-VALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp SEEEEECCSSTHHHH-HHHHHHH---SCTTCEE-EEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CEEEEeCCCCccchH-HHHHHhc---cCCCCCE-EEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 788999998887643 3332221 1122222 333333333445566678888999999999999988877654
No 293
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=46.31 E-value=11 Score=40.58 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=49.6
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhcCCEEEEECCHHH--HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 965 LRILLAEDT--PLIQIVACKILEKVGATVSVVPDGLQ--AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 965 ~~ILIVdD~--~~n~~~l~~~L~~~g~~v~~a~ng~e--Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+||||+++ +.-...+...|+..|++|.......- -.+.+. .||+|+++-.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~-------------------------~yDvIIl~d~ 59 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA-------------------------KQDLVILSDY 59 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH-------------------------TCSEEEEESC
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh-------------------------cCCEEEEcCC
Confidence 489999998 56778888999999999998765422 113332 6999998732
Q ss_pred CC-CCCHHHHHHHHHhcccccCCCCcceEEEec
Q 001222 1041 MP-KMDGYEATIEIRKSESEHGARNIPIVALTA 1072 (1120)
Q Consensus 1041 MP-~mdG~e~~~~IR~~~~~~~~~~ipIIalTa 1072 (1120)
.. ..+- +.++.|++.-... --+|++.+
T Consensus 60 ~~~~l~~-~~~~~L~~yV~~G----GgLi~~gG 87 (259)
T 3rht_A 60 PAERMTA-QAIDQLVTMVKAG----CGLVMLGG 87 (259)
T ss_dssp CGGGBCH-HHHHHHHHHHHTT----CEEEEECS
T ss_pred ccccCCH-HHHHHHHHHHHhC----CeEEEecC
Confidence 22 2332 4556677654331 23565544
No 294
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=46.29 E-value=1.4e+02 Score=26.51 Aligned_cols=118 Identities=10% Similarity=0.123 Sum_probs=68.0
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.......+..+...+...|..+..+........ . . ...+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~----~----------------------------~--~~~~~dl 49 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVN----Q----------------------------L--NEPWPDL 49 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHT----T----------------------------C--SSSCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHH----H----------------------------H--hccCCCE
Confidence 4566777777778888888877776554443222110 0 0 0123468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+++|..+++.++....+.++..... ....+..+ .............+.|...++.||+....+...+..+..
T Consensus 50 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~-s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 50 ILLAWMLPGGSGIQFIKHLRRESMT-RDIPVVML-TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEEESEETTEEHHHHHHHHHTSTTT-TTSCEEEE-EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHhCccc-CCCCEEEE-eCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 8899998887654333333221110 12222222 222222333455567888899999999999988877654
No 295
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=46.25 E-value=2.1e+02 Score=33.72 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=65.9
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhcC-CEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAEDT----PLIQIVACKILEKVG-ATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD~----~~n~~~l~~~L~~~g-~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..+++++.. ......++.+-+..+ ..+. .+.+.++|..+.+. ..|.|.
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a------------------------Gad~i~ 323 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA------------------------GANVVK 323 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh------------------------CCCEEE
Confidence 5667877643 233344555444443 3433 46788888777653 578887
Q ss_pred EeCCCC-----------CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDCQMP-----------KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP-----------~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..+.-- +...++++..+++.... ..+|||+--+-....|..+|+.+|||..+.
T Consensus 324 vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~---~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 324 VGIGPGSICTTRVVAGVGVPQLTAVYDCATEARK---HGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp ECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHT---TTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ECCCCccccccccccCCCCCcHHHHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 643210 12345666666544332 259999999999999999999999999876
No 296
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=46.02 E-value=1.7e+02 Score=26.55 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=72.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 717 VVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
.+++.......+..+...+...|. .+..+.....+...+.... .....+.
T Consensus 9 ~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~----------------------------~~~~~~~ 60 (143)
T 2qvg_A 9 DILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN----------------------------KENKIHP 60 (143)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT----------------------------TCCCCCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc----------------------------cccCCCC
Confidence 466777777888888888888776 5555554444333322100 0001345
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 869 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 869 (1120)
.++++|..+.+.++....+.++..... ....+ .+..............+.|...++.||+....+...+....
T Consensus 61 dlii~D~~l~~~~g~~~~~~l~~~~~~-~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 61 KLILLDINIPKMNGIEFLKELRDDSSF-TDIEV-FVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp SEEEEETTCTTSCHHHHHHHHTTSGGG-TTCEE-EEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHcCccc-cCCcE-EEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 788999988887664433333322111 12222 23333333445556677888899999999999888766543
No 297
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=45.82 E-value=85 Score=35.25 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=71.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcE
Q 001222 716 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 795 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 795 (1120)
..++++++....+..+...++..|..+..+.........+. ..+.+
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~----------------------------------~~~~d 51 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE----------------------------------SEQPD 51 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH----------------------------------HSCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh----------------------------------hCCCC
Confidence 35677888888899999999998887766555443332221 12457
Q ss_pred EEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccC-ChhHHHHHHHHHH
Q 001222 796 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAV 869 (1120)
Q Consensus 796 ~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~ 869 (1120)
++++|+.++++++-...+.++.. ..... ..+...........+..+.|..-++.||+ ....+...+....
T Consensus 52 lvllD~~mp~~~G~~~~~~lr~~---~~~~p-ii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 52 LVICDLRMPQIDGLELIRRIRQT---ASETP-IIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp EEEECCCSSSSCTHHHHHHHHHT---TCCCC-EEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHhh---CCCCc-EEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 89999999999885544444322 12222 22333222233445566788888999999 4565655555443
No 298
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=45.60 E-value=1.7e+02 Score=34.25 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=66.4
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhc-CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAE----DTPLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVd----D~~~n~~~l~~~L~~~-g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..++.++ ..+.....++.+-+.. +..+.. +.+.++|..+.+. ..|.|.
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a------------------------GaD~I~ 296 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA------------------------GADAVK 296 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT------------------------TCSEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc------------------------CCCEEE
Confidence 45566665 3344445555555554 444443 6788888777653 588888
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+-+. |+ ...++++.++++.... ..+|||+--+-...++..+++.+|||..+.
T Consensus 297 vg~g-~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~---~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 297 VGIG-PGSICTTRIVAGVGVPQISAIANVAAALEG---TGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp ECSS-CSTTCHHHHHTCBCCCHHHHHHHHHHHHTT---TTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ECCC-CCcCCCccccCCCCccHHHHHHHHHHHhcc---CCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 6211 11 2345666777664322 259999999988999999999999999875
No 299
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=45.53 E-value=1.1e+02 Score=34.38 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=64.1
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 964 GLRILLAE----DTPLIQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 964 ~~~ILIVd----D~~~n~~~l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
+..+++++ +.......++.+-+..+..|. .+.+.++|..+.+. ..|.|..
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a------------------------GaD~I~V 172 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN------------------------GADGIKV 172 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc------------------------CcCEEEE
Confidence 34455553 233334455555455566665 47888888776642 5788877
Q ss_pred eCC------C-----CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1038 DCQ------M-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1038 D~~------M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-.. . .....++++.++++.... ..+|||+--+-.+.++..+++.+|||..+.
T Consensus 173 G~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~---~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 173 GIGPGSICTTRIVAGVGVPQITAIEKCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp CSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHH---HTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ecCCCcCCCcccccCCCCCcHHHHHHHHHHHhh---cCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 211 0 012346666666543222 248999988888899999999999998763
No 300
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=44.90 E-value=1.4e+02 Score=27.45 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=42.5
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 870 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 870 (1120)
+..++++|..+++.++....+.++ .......+..+.. ...........+.|...++.||+....+...+..+..
T Consensus 49 ~~dlvllD~~lp~~~g~~l~~~l~---~~~~~~~ii~ls~-~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 49 PPNVLLTDVRMPRMDGIELVDNIL---KLYPDCSVIFMSG-YSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHH---HHCTTCEEEEECC-STTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCcEEEEeC-CCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 457899999999887644333332 2222222333322 2222333445567888899999999999988877654
No 301
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=44.02 E-value=1.7e+02 Score=32.01 Aligned_cols=58 Identities=26% Similarity=0.454 Sum_probs=40.5
Q ss_pred HHHHHHHHhcccccCCCCcceE--EEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhc
Q 001222 1047 YEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~ 1110 (1120)
+++++++++.. ++||| +-.+-.+.++..+++++|+|.++. |--++......+...++.
T Consensus 196 ~~ll~~i~~~~------~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKLK------RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHHT------SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc------CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 56677776542 46776 555666899999999999999986 444666666555555544
No 302
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=43.95 E-value=1.4e+02 Score=31.01 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHHHH
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERMVSTIL 1105 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L~~~I~ 1105 (1120)
++.++++++.. ++|||+-.+-.+.++..+++++|+|+.+. .|++++++.+.+.
T Consensus 185 ~~~i~~l~~~~------~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~ 243 (252)
T 1ka9_F 185 LRLTRMVAEAV------GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLA 243 (252)
T ss_dssp HHHHHHHHHHC------SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88999998742 58999999888889999999999999886 4678777766543
No 303
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=43.80 E-value=91 Score=31.61 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=71.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.++....+..+...+...|..+..+.....+...+.. .+.++
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~dl 51 (230)
T 2oqr_A 6 SVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR----------------------------------AGADI 51 (230)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc----------------------------------cCCCE
Confidence 46677777778888888888877766555544333322211 13468
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+++.++....+.++. .+ ...+..+.. ...........+.|...++.||+....+...+..+..+
T Consensus 52 vllD~~l~~~~g~~~~~~l~~---~~-~~~ii~lt~-~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 52 VLLDLMLPGMSGTDVCKQLRA---RS-SVPVIMVTA-RDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEESSCSSSCHHHHHHHHHH---HC-SCSEEEEEC-CHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHc---CC-CCCEEEEeC-CCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999988776443333332 11 222222222 22223334455678888899999999999998887654
No 304
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=43.19 E-value=1.1e+02 Score=31.89 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=57.5
Q ss_pred EEEEEeCCH-HHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc-EEE-EeC
Q 001222 966 RILLAEDTP-LIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD-LIL-MDC 1039 (1120)
Q Consensus 966 ~ILIVdD~~-~n~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-lIL-mD~ 1039 (1120)
..+++.|-+ .....+.+.+++.|..+...-+ ..++++.+... .| +|. +..
T Consensus 110 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~------------------------~d~~i~~~~~ 165 (248)
T 1geq_A 110 DGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM------------------------TTGFVYLVSL 165 (248)
T ss_dssp CEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH------------------------CSSEEEEECC
T ss_pred CEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc------------------------CCCeEEEEEC
Confidence 344444422 2334455666778877665443 35566555431 23 553 444
Q ss_pred CCCCCC---------HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1040 QMPKMD---------GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1040 ~MP~md---------G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
|+.. +++.++++|+.. ++||++--+-...++..+++++|+|.++.=
T Consensus 166 --~G~~g~~~~~~~~~~~~i~~l~~~~------~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 166 --YGTTGAREEIPKTAYDLLRRAKRIC------RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp --C-------CCCHHHHHHHHHHHHHC------SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred --CccCCCCCCCChhHHHHHHHHHhhc------CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 5433 345667777532 489888777777689999999999999863
No 305
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=42.56 E-value=1.7e+02 Score=29.37 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=69.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+...+...| .+..+........ .. .+.++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~-----------------------------------~~-~~~dl 46 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLN-----------------------------------DE-EAFHV 46 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHH-----------------------------------CC-SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHH-----------------------------------hc-CCCCE
Confidence 35666777777777888887776 4444433222110 11 34578
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+++.++....+.+. .......+..+ .............+.|...++.||+....+...+..+..+
T Consensus 47 vllD~~lp~~~g~~~~~~lr---~~~~~~~ii~l-t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 47 VVLDVMLPDYSGYEICRMIK---ETRPETWVILL-TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEESBCSSSBHHHHHHHHH---HHCTTSEEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH---hcCCCCcEEEE-EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 89999999887643333332 22222233333 3333334445566788889999999999999988887654
No 306
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=42.04 E-value=2.3e+02 Score=26.83 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=65.7
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC-ce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKKK-VS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.+.....+..+..++...+ .. +..+.....+...+.. .+
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------------------~~ 71 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE----------------------------------LK 71 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc----------------------------------CC
Confidence 457778888888888888888764 22 2233333333222211 13
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCC-chhhHhhhhcCCcEEEeccCC---------hhHHHH
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTT-SPIKTELSREGQNIVVTKPLY---------KGKMIQ 863 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kP~~---------~~~l~~ 863 (1120)
.+++++|..+.+.++....+.++. ... ..+..+...... .....+..+.|..-++.||+. ...+..
T Consensus 72 ~dlvilD~~l~~~~g~~l~~~lr~---~~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~ 147 (164)
T 3t8y_A 72 PDVITMDIEMPNLNGIEALKLIMK---KAP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLE 147 (164)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHH---HSC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---cCC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHH
Confidence 568899999988876444333332 222 223333322222 223446677888999999998 445555
Q ss_pred HHHHHH
Q 001222 864 LLETAV 869 (1120)
Q Consensus 864 ~l~~~~ 869 (1120)
.+....
T Consensus 148 ~i~~~~ 153 (164)
T 3t8y_A 148 KIRQAM 153 (164)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 554443
No 307
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=41.93 E-value=3.1e+02 Score=30.70 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=60.7
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhc-CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAEDT----PLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVdD~----~~n~~~l~~~L~~~-g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..++.+|-. ....+.++.+=+.. +..|.. +.+.++|..+.+. ..|.|.
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a------------------------GaD~I~ 167 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC------------------------GADIIK 167 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT------------------------TCSEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc------------------------CCCEEE
Confidence 4567777622 22233333332222 556655 7888888887753 689998
Q ss_pred EeCCCCCC------------CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDCQMPKM------------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP~m------------dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.... |+. ..++++.++++. .. |||+--+-.+..+..+++.+|||..+.
T Consensus 168 Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~------~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 168 AGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRA------DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp ECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTS------SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EcCC-CCcCccccccCCccHHHHHHHHHHHHh------CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8543 322 123444444321 12 999988888999999999999998764
No 308
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=41.93 E-value=1.8e+02 Score=31.94 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHhcCCEEEE-ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-------CCCHHHHHHHH
Q 001222 982 KILEKVGATVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-------KMDGYEATIEI 1053 (1120)
Q Consensus 982 ~~L~~~g~~v~~-a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP-------~mdG~e~~~~I 1053 (1120)
..+++.|..+.. +.+.++|..+... ..|.|+.+-.-+ ....+++++++
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~------------------------GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v 167 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL------------------------GVDAVSIDGFECAGHPGEDDIPGLVLLPAA 167 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT------------------------TCSEEEEECTTCSBCCCSSCCCHHHHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc------------------------CCCEEEEECCCCCcCCCCccccHHHHHHHH
Confidence 445556766554 6788877766542 578888753212 12567888888
Q ss_pred HhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1054 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1054 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++. .++|||+--+-.+.++..+++.+|+|....
T Consensus 168 ~~~------~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 168 ANR------LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp HTT------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHh------cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 863 258999988888899999999999999874
No 309
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=41.79 E-value=1.6e+02 Score=26.34 Aligned_cols=116 Identities=8% Similarity=0.031 Sum_probs=65.9
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCcEE
Q 001222 717 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 796 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 796 (1120)
.+++.+.....+..+..++...+..+..+.....+.. .......+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-----------------------------------~~~~~~dl 49 (135)
T 3eqz_A 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLT-----------------------------------LSLNKQDI 49 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTT-----------------------------------SCCCTTEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHH-----------------------------------hhccCCCE
Confidence 4667777777777788887776555444443322110 01112578
Q ss_pred EEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCc-----hhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 797 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTS-----PIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 797 ~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++|..+.+.++....+.++ .......+..+.. .... .......+.|...++.||+....+...+..+..+
T Consensus 50 vi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~-~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 50 IILDLMMPDMDGIEVIRHLA---EHKSPASLILISG-YDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EEEECCTTTTHHHHHHHHHH---HTTCCCEEEEEES-SCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred EEEeCCCCCCCHHHHHHHHH---hCCCCCCEEEEEe-ccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 99999888876543333332 2222222322222 2221 1122344556667899999999999998887653
No 310
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.99 E-value=93 Score=32.87 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHH
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERMVST 1103 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L~~~ 1103 (1120)
++.++++++. .++|||+-.+-.+.++..+++++|+|+++. .|++.+++.+.
T Consensus 189 ~~~i~~l~~~------~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 189 TEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp HHHHHHHGGG------CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred HHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 7888888864 258999999999999999999999999875 35555555443
No 311
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=40.86 E-value=1e+02 Score=33.49 Aligned_cols=93 Identities=22% Similarity=0.148 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhcCC---EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001222 966 RILLAEDTPLIQ----IVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1038 (1120)
Q Consensus 966 ~ILIVdD~~~n~----~~l~~~L~~~g~---~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD 1038 (1120)
-+||.||+.... ..++..-+..+. --..+.+-+|+.+++.. ..|+|.+|
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a------------------------GaD~I~ld 223 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA------------------------GADLILLD 223 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH------------------------TCSEEEEE
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc------------------------CCCEEEEC
Confidence 367777765432 233333333443 23467899999888853 58999999
Q ss_pred CCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1039 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1039 ~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-.-| +.++++.+.-. .++|+++ ++.-..+......++|+|.+-+
T Consensus 224 ~~~~-----~~~k~av~~v~----~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 224 NFPL-----EALREAVRRVG----GRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SCCH-----HHHHHHHHHHT----TSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCCH-----HHHHHHHHHhC----CCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7433 33444443221 2478776 6667788999999999988753
No 312
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=40.86 E-value=1e+02 Score=31.76 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=57.9
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHHhcCCEEEEE----CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc
Q 001222 964 GLRILLAE------DTPLIQIVACKILEKVGATVSVV----PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD 1033 (1120)
Q Consensus 964 ~~~ILIVd------D~~~n~~~l~~~L~~~g~~v~~a----~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1033 (1120)
+.+|++++ |...+....++.|+++|+++... .+.++..+.+.. .|
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~-------------------------ad 81 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK-------------------------ND 81 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH-------------------------SS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh-------------------------CC
Confidence 56899997 44557777889999999999988 488777777753 68
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhccccc-----CCCCcceEEEec
Q 001222 1034 LILMDCQMPKMDGYEATIEIRKSESEH-----GARNIPIVALTA 1072 (1120)
Q Consensus 1034 lILmD~~MP~mdG~e~~~~IR~~~~~~-----~~~~ipIIalTa 1072 (1120)
.|++ |+.+-+.+++.+|+..-.. -....|++..+|
T Consensus 82 ~I~l----~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 82 FIYV----TGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp EEEE----CCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred EEEE----CCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 8885 8888777777776542110 012478998886
No 313
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=40.63 E-value=2.1e+02 Score=25.99 Aligned_cols=116 Identities=13% Similarity=0.218 Sum_probs=69.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhc-Cceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCC
Q 001222 716 TVVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 793 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 793 (1120)
..+++.......+..+...+... +.... .+.....+...+. ..+
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~----------------------------------~~~ 55 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ----------------------------------HNK 55 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH----------------------------------HCC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH----------------------------------hCC
Confidence 35677777777788888888775 55422 3333332222211 123
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
.+++++|..+.+.++....+.++. ......+..+... . .......+.|...++.||+....+...+..+...
T Consensus 56 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii~~s~~--~-~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 56 VDAIFLDINIPSLDGVLLAQNISQ---FAHKPFIVFITAW--K-EHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHTT---STTCCEEEEEESC--C-TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHc---cCCCceEEEEeCC--H-HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 578889998888766443333332 2222223333322 2 2334556788888999999999999888877653
No 314
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=37.57 E-value=55 Score=42.70 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=30.9
Q ss_pred EEEEeCCCCCChhh--------HhhhhcccccCCC----CCCCCCCCccchHHHHHHHHHH
Q 001222 628 FEVDDTGCGIDQSK--------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 676 (1120)
Q Consensus 628 ~~V~DtG~GI~~e~--------l~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~ 676 (1120)
++|.|+|.|||-+. .+-||....-+.. +.....|=.|.|.+.|.-|-+.
T Consensus 95 isV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 95 IEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 78999999999652 3456655433221 1111223469999999887643
No 315
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=36.96 E-value=3.4e+02 Score=31.69 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=65.6
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIVd----D~~~n~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+..++.++ +.......++.+-+.. +..|. .+.+.++|..+.+. ..|.|.
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a------------------------GaD~I~ 298 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------------------GVSAVK 298 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh------------------------CCCEEE
Confidence 45667766 3444455566655554 33433 36777777776653 578888
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1037 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.... |+ ...++++.++.+.... ..+|||+--+-....+..+++.+|||..+.
T Consensus 299 Vg~g-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~---~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 299 VGIG-PGSICTTRIVTGVGVPQITAIADAAGVANE---YGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp ECSS-CCTTBCHHHHHCCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ECCC-CCcCcccccccCCCccHHHHHHHHHHHhcc---CCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 6421 11 1245666666653322 249999988888999999999999999875
No 316
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=36.72 E-value=2.3e+02 Score=33.29 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC-------------
Q 001222 976 IQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC------------- 1039 (1120)
Q Consensus 976 n~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~------------- 1039 (1120)
....++.+-+.. +..|. .+.+.++|..+.+. ..|.|..-.
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a------------------------Gad~I~vg~~~G~~~~t~~~~~ 338 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA------------------------GVDGLRVGMGCGSICITQEVMA 338 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------------------TCSEEEECSSCSCCBTTBCCCS
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc------------------------CCCEEEECCCCCcccccccccC
Confidence 345555555554 56655 36788777776643 467666522
Q ss_pred -CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1040 -QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1040 -~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|....++.++++++. ..+|||+--+-.+..+..+++.+|||....
T Consensus 339 ~g~~~~~~~~~~~~~~~~------~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 339 CGRPQGTAVYKVAEYARR------FGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp CCCCHHHHHHHHHHHHGG------GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCccchhHHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 22333345666666643 259999998888999999999999998754
No 317
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=36.61 E-value=1.7e+02 Score=32.24 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=57.7
Q ss_pred HHHHhcCCEEEE-ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-----CCCHHHHHHHHHh
Q 001222 982 KILEKVGATVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-----KMDGYEATIEIRK 1055 (1120)
Q Consensus 982 ~~L~~~g~~v~~-a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP-----~mdG~e~~~~IR~ 1055 (1120)
..+++.|..+.. +.+.++|..+.+. ..|.|+.+-.-+ ....+++++++++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~------------------------GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~ 173 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA------------------------GADAVIAEGMESGGHIGEVTTFVLVNKVSR 173 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT------------------------TCSCEEEECTTSSEECCSSCHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc------------------------CCCEEEEECCCCCccCCCccHHHHHHHHHH
Confidence 445566776554 6777777665532 578787764211 1246788888876
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1056 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1056 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
. .++|||+-.+-.+.++..+++.+|+|.+..
T Consensus 174 ~------~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 174 S------VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp H------CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred H------cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3 258999988888899999999999999874
No 318
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=36.37 E-value=1.6e+02 Score=27.04 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=63.6
Q ss_pred CcEEEEeecChhhHHHHHHHHHhc-Cceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccC
Q 001222 715 NTVVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 792 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1120)
...+++.+.....+..+..++... +.... .+.........+.. ..
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~---------------------------------~~ 59 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA---------------------------------QP 59 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH---------------------------------CT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc---------------------------------CC
Confidence 456788888888888899998887 66543 44444333322211 11
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeec-cCCCchhhHhhhhcCCcEEEeccCChhH
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVN-HQTTSPIKTELSREGQNIVVTKPLYKGK 860 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kP~~~~~ 860 (1120)
+.+++++|..+.+.++....+.++. ... ..+..+.. .........+..+.|..-++.||+....
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~lr~---~~~-~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 124 (145)
T 3kyj_B 60 NVDLILLDIEMPVMDGMEFLRHAKL---KTR-AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVS 124 (145)
T ss_dssp TCCEEEECTTSCCCTTCHHHHHHHH---HCC-CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---cCC-CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHH
Confidence 4578899999998877444333332 111 22222222 1223334455667888888999998543
No 319
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=36.27 E-value=1.2e+02 Score=31.70 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=48.8
Q ss_pred Ccc-EEEEeCCCCCC-C--HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE------CCCCHHHH
Q 001222 1031 RFD-LILMDCQMPKM-D--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERM 1100 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~m-d--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L 1100 (1120)
.++ +++++..-..+ . .++.++++++. .++|||+-.+-...++..+++++|+|+++. .|++++++
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~ 237 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVREL 237 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGGG------CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHH
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHH
Confidence 456 55566542211 2 27888898863 258999998888889999999999999875 35677666
Q ss_pred HHHHH
Q 001222 1101 VSTIL 1105 (1120)
Q Consensus 1101 ~~~I~ 1105 (1120)
.+.+.
T Consensus 238 ~~~l~ 242 (253)
T 1thf_D 238 KEYLK 242 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 320
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=36.21 E-value=2.2e+02 Score=32.24 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC---------C
Q 001222 975 LIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM---------P 1042 (1120)
Q Consensus 975 ~n~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M---------P 1042 (1120)
...+.++.+-+.. +..|. .+.+.++|..+.+ ...|.|..-... +
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~------------------------~Gad~I~vg~~~G~~~~~~~~~ 235 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS------------------------VGADCLKVGIGPGSICTTRIVA 235 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT------------------------TTCSEEEECSSCSTTSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh------------------------cCCCEEEECCCCCcCcCccccC
Confidence 3444444433444 55655 3667766665543 258888872100 0
Q ss_pred --CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1043 --KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1043 --~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
....+++++.+++.... .++|||+-.+-.+.++..+++.+|||....
T Consensus 236 ~~g~p~~~~l~~v~~~~~~---~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 236 GVGVPQITAICDVYEACNN---TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CCCCCHHHHHHHHHHHHTT---SSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCcchHHHHHHHHHHHhh---cCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 12246667777754221 259999999988999999999999999876
No 321
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=35.51 E-value=54 Score=33.50 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred HHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-CCCHHHHHHHHHhcccc
Q 001222 982 KILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-KMDGYEATIEIRKSESE 1059 (1120)
Q Consensus 982 ~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP-~mdG~e~~~~IR~~~~~ 1059 (1120)
...++.|..+. .+.+..|+..+.. ...|+|++ .| ...|.+.++++++..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~------------------------~G~d~v~v---~~t~~~g~~~~~~l~~~~~- 146 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE------------------------AGAQALKI---FPSSAFGPQYIKALKAVLP- 146 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH------------------------TTCSEEEE---TTHHHHCHHHHHHHHTTSC-
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH------------------------CCCCEEEE---ecCCCCCHHHHHHHHHhcc-
Confidence 44556676532 3788888876653 25898886 22 1236788888876422
Q ss_pred cCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1060 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1060 ~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.++||++..+-. .++..+++++|++.+..
T Consensus 147 ---~~ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 147 ---SDIAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp ---TTCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred ---CCCeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 158999988776 78889999999999984
No 322
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=34.86 E-value=1.5e+02 Score=30.31 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+++.++++++. .++|||+..+-.+.++..+++++|+|.++.
T Consensus 163 ~~~~~~~~~~~------~~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 163 DFQFLKDVLQS------VDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp HHHHHHHHHHH------CCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHhh------CCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 46778888763 248999988888999999999999999886
No 323
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=34.85 E-value=39 Score=36.52 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEec------cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTA------HAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1104 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa------~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I 1104 (1120)
+.+++++++|+.. .++|||++|= ...+....+|.++|+|+.+.=-+.+++....+
T Consensus 83 ~~~~~v~~~r~~~-----~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 83 ICFELIAQIRARN-----PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHHHHHC-----TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 5688999998641 3589999983 23456788999999999998666666644433
No 324
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=34.24 E-value=3.4e+02 Score=28.79 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=50.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHH
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-KPIDSERMVSTILRL 1107 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KPi~~~~L~~~I~~l 1107 (1120)
.+|.|++|++=-..+.-.+...++..... ...|+|=+-+ .+..+..+++++|++..+. |-=+.+++...+..+
T Consensus 37 g~D~vilDlEhav~~~~k~~~~l~a~~~~---~~~~~VRVn~-~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 37 GLDYFIVDCEHAAYTFREINHLVSVAKNA---GVSVLVRIPQ-VDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp TCSEEEEESSSSCCCHHHHHHHHHHHHHH---TCEEEEECSS-CCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred CcCEEEEeccCCCCCHHHHHHHHHHHhhc---CCeEEEEeCC-CCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 79999999998888877777777764321 1234444444 4567999999999998765 333667776655444
No 325
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=34.21 E-value=1.3e+02 Score=30.37 Aligned_cols=119 Identities=12% Similarity=-0.028 Sum_probs=70.6
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceeeec-c-chhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccC
Q 001222 716 TVVVLATVGSMERMIISQWLRK-KKVSTLET-S-EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 792 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~-~~~~~~~~-~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1120)
..+++.++....+..+..++.. .+..+... . ..+.+. .. ....
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~---------------------------------~~-~~~~ 53 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEE---------------------------------NK-PESR 53 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHT---------------------------------TC-SGGG
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHH---------------------------------HH-hhcc
Confidence 3577778888888888888884 46554321 1 111000 00 0113
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+.+++++|+.++++++....+.++.. ......+ .+..............+.|...++.||+....+...+..+..+
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~--~~~~~~i-i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHI--SCPDAKE-VIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHH--HCTTCEE-EEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--hCCCCcE-EEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 45789999999998764433333221 1112222 2333333333455566778888999999999999998887764
No 326
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=33.92 E-value=1.3e+02 Score=30.98 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=48.7
Q ss_pred CccEE-EEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE------CCCCHHHH
Q 001222 1031 RFDLI-LMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERM 1100 (1120)
Q Consensus 1031 ~~DlI-LmD~~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L 1100 (1120)
..|.| ++++.-..+ -.++.++++++. .++||++-.+-...++..+++++|+|.++. .+.+.+++
T Consensus 167 G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~------~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 167 GAGEILLTSIDRDGTGLGYDVELIRRVADS------VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHH
T ss_pred CCCEEEEecccCCCCcCcCCHHHHHHHHHh------cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHH
Confidence 35665 556542111 146788888864 258999988887789999999999999874 46666666
Q ss_pred HHHHHH
Q 001222 1101 VSTILR 1106 (1120)
Q Consensus 1101 ~~~I~~ 1106 (1120)
.+.+.+
T Consensus 241 ~~~l~~ 246 (253)
T 1h5y_A 241 KRYLKE 246 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 327
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.73 E-value=94 Score=30.91 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=36.0
Q ss_pred cCcEEEEEeCCHHHHHHHHHHHHh--cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 963 EGLRILLAEDTPLIQIVACKILEK--VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 963 ~~~~ILIVdD~~~n~~~l~~~L~~--~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.|.+||++|=|+.. -+...+.. .++.+..+.. ....+.+... ...||+||+|+-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l---------------------~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKD---------------------LADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHH---------------------TTTSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHh---------------------cCCCCEEEEECC
Confidence 46799999988643 23344432 3455655544 2333333322 136999999983
Q ss_pred CCCCCHHHHHHHHH
Q 001222 1041 MPKMDGYEATIEIR 1054 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR 1054 (1120)
|.. +......+.
T Consensus 85 -~~~-~~~~~~~l~ 96 (206)
T 4dzz_A 85 -GSL-SVITSAAVM 96 (206)
T ss_dssp -SSS-SHHHHHHHH
T ss_pred -CCC-CHHHHHHHH
Confidence 333 433334444
No 328
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=33.71 E-value=4.2e+02 Score=29.35 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=64.7
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001222 965 LRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1037 (1120)
Q Consensus 965 ~~ILIVd----D~~~n~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm 1037 (1120)
..++.++ +.....+.++.+=+.. +..+. .+.+.++|..+.+. ..|.|..
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a------------------------GaD~I~v 188 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS------------------------GADIIKV 188 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh------------------------CCCEEEE
Confidence 3455554 2333344444443443 55544 47888888877753 5888866
Q ss_pred eCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE-EECCC
Q 001222 1038 DCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-LTKPI 1095 (1120)
Q Consensus 1038 D~~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-L~KPi 1095 (1120)
-. -|+ ..-++++..+++.... ..+|||+-.+-.+..|..+++.+|||.. +-+||
T Consensus 189 ~~-g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~---~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 189 GI-GPGSVCTTRKKTGVGYPQLSAVMECADAAHG---LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp CS-SCSTTBCHHHHHCBCCCHHHHHHHHHHHHHH---TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CC-CCCcCcCccccCCCCccHHHHHHHHHHHHhh---cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 42 232 1234555666553222 2599999999999999999999999976 44666
No 329
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=33.51 E-value=1.6e+02 Score=30.70 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCH---HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1034 LILMDCQMPKMDG---YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1034 lILmD~~MP~mdG---~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.+.|.....+.. ++.+++|++. ..+||++...-.+.++..+++++|+|..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~------~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER------VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHh------CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 5566876543332 4456666642 359999999999999999999999999876
No 330
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.49 E-value=2.6e+02 Score=24.85 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=69.6
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 715 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 715 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
...+++.......+..+...+...|..+..+.........+.. ..+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---------------------------------~~~~ 51 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS---------------------------------GAAI 51 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT---------------------------------TCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc---------------------------------CCCC
Confidence 3457777888888888888888888776655544433322211 0145
Q ss_pred EEEEEEeeccc-cCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALLD-LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~d-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
.++++|..+.+ .++....+.++ .......+.++.......... ...+.| .++.||+....+...+..+..+
T Consensus 52 dlvi~d~~l~~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~~~-~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 52 DGVVTDIRFCQPPDGWQVARVAR---EIDPNMPIVYISGHAALEWAS-NGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp CEEEEESCCSSSSCHHHHHHHHH---HHCTTCCEEEEESSCCTTHHH-HSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEEEeeeCCCCCCHHHHHHHHH---hcCCCCCEEEEeCCccHHHHH-hhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 68889998886 66543333322 222233333443333332222 222223 4899999999999998887654
No 331
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=33.10 E-value=1.4e+02 Score=30.47 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=38.8
Q ss_pred CccEEEEeCCCC--------CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMP--------KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP--------~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|.|++..-.| ..-|++.++++++.. .++||++.-+-. .++..+++++|+|.+..
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~-----~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-----ISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-----CCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC-----CCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 589888622111 123688888888642 138998877665 77888899999999864
No 332
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=33.08 E-value=2.7e+02 Score=25.03 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=69.2
Q ss_pred CCCcEEEEeecChhhHHHHHHHHHhcCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccC
Q 001222 713 FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 792 (1120)
Q Consensus 713 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1120)
..+..+++.+.....+..+...+...|..+..+.....+...+...
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~---------------------------------- 61 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR---------------------------------- 61 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS----------------------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC----------------------------------
Confidence 3456788888888888889999998888777666555444333211
Q ss_pred CcEEEEEEeeccccCchHHHHHhhhhhhhhc-cceeEeeeccCCCchhhHhhhhcCCcEEEeccC-ChhHHHHHHHHHHh
Q 001222 793 PVYVVVIDIALLDLSSDLWREQLNSLDIFHR-KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVR 870 (1120)
Q Consensus 793 p~~~~~id~~l~d~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~ 870 (1120)
+..+++ +.+.++... +..+... . ...+.++ .............+.|...++.||+ ....+...+..+..
T Consensus 62 ~~dlvi----~~~~~g~~~---~~~l~~~-~~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 62 NYDLVM----VSDKNALSF---VSRIKEK-HSSIVVLVS-SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp CCSEEE----ECSTTHHHH---HHHHHHH-STTSEEEEE-ESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCCEEE----EcCccHHHH---HHHHHhc-CCCccEEEE-eCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 122333 444443222 2222222 2 2223333 3333334455666788889999999 99999888877654
No 333
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=32.36 E-value=2.4e+02 Score=31.60 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=70.2
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 716 TVVVLATVGSMERMIISQWLRK-KKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 716 ~~v~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
..++++++....+..+...+.. .+..+..+.........+.. ..+.
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~---------------------------------~~~~ 50 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILES---------------------------------CGHV 50 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHH---------------------------------HSCE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhh---------------------------------CCCC
Confidence 3567788888888888888887 45555555444333222211 1246
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCch------hhHhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSP------IKTELSREGQNIVVTKPLYKGKMIQLLETA 868 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 868 (1120)
+++++|+.++++++-...+.++ .... ...++........ ...+..+.|..-.+.||+....+...+..+
T Consensus 51 DlvllDi~mP~~dG~ell~~l~---~~~~--~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~ 125 (400)
T 3sy8_A 51 DIAICDLQMSGMDGLAFLRHAS---LSGK--VHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRY 125 (400)
T ss_dssp EEEEECSSCSSSCHHHHHHHHH---HHTC--EEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH---hcCC--CceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHH
Confidence 8999999999998754433332 2222 2222222222222 122344566667799999999999888877
Q ss_pred Hhc
Q 001222 869 VRG 871 (1120)
Q Consensus 869 ~~~ 871 (1120)
...
T Consensus 126 ~~~ 128 (400)
T 3sy8_A 126 NAR 128 (400)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 334
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=32.26 E-value=2.3e+02 Score=28.93 Aligned_cols=97 Identities=8% Similarity=0.008 Sum_probs=64.9
Q ss_pred hcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--CHHHHHHHHHhcccccCC
Q 001222 986 KVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--DGYEATIEIRKSESEHGA 1062 (1120)
Q Consensus 986 ~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m--dG~e~~~~IR~~~~~~~~ 1062 (1120)
..|..+. -+.+..|+..+.+. ..|+|-+ -|.. -|.+.++.+|...
T Consensus 102 ~~g~~~i~G~~t~~e~~~A~~~------------------------Gad~v~~---fpa~~~gG~~~lk~l~~~~----- 149 (207)
T 2yw3_A 102 ARGVPYLPGVLTPTEVERALAL------------------------GLSALKF---FPAEPFQGVRVLRAYAEVF----- 149 (207)
T ss_dssp HHTCCEEEEECSHHHHHHHHHT------------------------TCCEEEE---TTTTTTTHHHHHHHHHHHC-----
T ss_pred HhCCCEEecCCCHHHHHHHHHC------------------------CCCEEEE---ecCccccCHHHHHHHHhhC-----
Confidence 3554433 47888898887752 5788766 4532 3889999998743
Q ss_pred CCcceEEEeccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHhhcCCCCCC
Q 001222 1063 RNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLTKNMPSEAT 1116 (1120)
Q Consensus 1063 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KPi~~~~L~~~I~~l~~~~~~~~~ 1116 (1120)
+++|+++.-+- +.+....++++|++.+. .+ -+++++.++.+++.+...+++.
T Consensus 150 ~~ipvvaiGGI-~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~~~~~~~ 206 (207)
T 2yw3_A 150 PEVRFLPTGGI-KEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKALLSPQAP 206 (207)
T ss_dssp TTCEEEEBSSC-CGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHHC-----
T ss_pred CCCcEEEeCCC-CHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHHhcccCC
Confidence 36899876554 46788999999998765 33 4566788888887776655543
No 335
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=32.04 E-value=1.9e+02 Score=32.38 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=42.3
Q ss_pred CccEEEEeCC----CC-CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQ----MP-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~----MP-~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|.+.-. +. ...-++++.++++... .++|||+-.+-.+.+|..+++.+|||.++.
T Consensus 246 Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~----~~ipvia~GGI~~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQ----GRIPVFLDGGVRRGTDVFKALALGAAGVFI 308 (370)
T ss_dssp TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTT----TSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCCCCccCCCcccHHHHHHHHHHHhC----CCCEEEEECCCCCHHHHHHHHHcCCCEEee
Confidence 4677766321 10 1235777888876432 259999999999999999999999999876
No 336
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=31.96 E-value=93 Score=33.65 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcccccCCCCcceEEE--eccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhc
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVAL--TAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIal--Ta~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~ 1110 (1120)
.|+++++|++. .++|||++ .+-.++++..++++.|+|+.+. |-=++.....++...+..
T Consensus 186 d~elI~~Ike~------~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEK------GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHH------TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc------cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 37788888764 25899887 3335789999999999999985 333566666666665543
No 337
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=31.95 E-value=1.3e+02 Score=31.27 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=47.4
Q ss_pred Ccc-EEEEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHc---CCCEEEE------CCCCH
Q 001222 1031 RFD-LILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLT------KPIDS 1097 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~------KPi~~ 1097 (1120)
.+| +++++..-..+ -.++.++++++. ..+|||+-.+-...++..+++++ |+|.++. .|+++
T Consensus 159 G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~------~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~ 232 (244)
T 1vzw_A 159 GCARYVVTDIAKDGTLQGPNLELLKNVCAA------TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTL 232 (244)
T ss_dssp TCCCEEEEEC-------CCCHHHHHHHHHT------CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCCEEEEeccCcccccCCCCHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCH
Confidence 466 56677652211 137888998863 25899999888888999999999 9999874 56676
Q ss_pred HHHHHHH
Q 001222 1098 ERMVSTI 1104 (1120)
Q Consensus 1098 ~~L~~~I 1104 (1120)
+++.+.+
T Consensus 233 ~~~~~~~ 239 (244)
T 1vzw_A 233 EEALEAT 239 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 338
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=31.74 E-value=65 Score=35.09 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=44.8
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1117 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1117 (1120)
-++++..|+..+ +..+|.++.+. .++..+++++|+|..+.-|++++.+...+..+-.+.+-+++|
T Consensus 183 ~~av~~ar~~~~-----~~~~IgVev~t-~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v~~~ipi~AsG 247 (286)
T 1x1o_A 183 GEAVRRAKARAP-----HYLKVEVEVRS-LEELEEALEAGADLILLDNFPLEALREAVRRVGGRVPLEASG 247 (286)
T ss_dssp HHHHHHHHHHSC-----TTSCEEEEESS-HHHHHHHHHHTCSEEEEESCCHHHHHHHHHHHTTSSCEEEES
T ss_pred HHHHHHHHHhCC-----CCCEEEEEeCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEc
Confidence 346677776532 22345556654 777888999999999999999999998876653334444444
No 339
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=31.73 E-value=1e+02 Score=33.34 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC----CCCH----------H
Q 001222 983 ILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----KMDG----------Y 1047 (1120)
Q Consensus 983 ~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP----~mdG----------~ 1047 (1120)
..+++|. ++..+.|.+||..+.+. .+|+|... || +.-| -
T Consensus 158 ~A~~~gL~Ti~~v~~~eeA~amA~a------------------------gpDiI~~h--~glT~gglIG~~~avs~~~~~ 211 (286)
T 2p10_A 158 EAHKLDLLTTPYVFSPEDAVAMAKA------------------------GADILVCH--MGLTTGGAIGARSGKSMDDCV 211 (286)
T ss_dssp HHHHTTCEECCEECSHHHHHHHHHH------------------------TCSEEEEE--CSCC---------CCCHHHHH
T ss_pred HHHHCCCeEEEecCCHHHHHHHHHc------------------------CCCEEEEC--CCCCCCCcccCCCcccHHHhH
Confidence 3455674 67789999999987753 69999976 45 3333 2
Q ss_pred HHHHHHHhcccccCCCCcceEEEec--cCCHHHHHHHHHc--CCCEEEEC
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTA--HAMNADEKKCLGV--GMNAYLTK 1093 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa--~~~~~~~~~~l~a--G~d~yL~K 1093 (1120)
|.++++.+....- .+++ +|++-+ -+.++|.+.+++. |+++|+.=
T Consensus 212 e~i~~i~~a~~~v-npdv-ivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 212 SLINECIEAARTI-RDDI-IILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp HHHHHHHHHHHHH-CSCC-EEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHHHHHHh-CCCc-EEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 3333333322111 1233 333332 3789999999999 99999975
No 340
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=30.60 E-value=2.6e+02 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=42.3
Q ss_pred CccEEEEeCCCC-----CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMP-----KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP-----~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|+.+-.-+ ....+++++++++.. ++|||+--+-.+.++..+++.+|+|....
T Consensus 130 GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~------~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 130 GADAVIAEGMEAGGHIGKLTTMTLVRQVATAI------SIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC------SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCCCCCccHHHHHHHHHHhc------CCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 578888763211 134578888888642 58999988888899999999999998764
No 341
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=29.81 E-value=97 Score=31.56 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=70.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcC-ceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCchhhHHHhhhhhhccCCc
Q 001222 717 VVVLATVGSMERMIISQWLRKKK-VSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 794 (1120)
Q Consensus 717 ~v~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 794 (1120)
.+++.++....+..+..++...+ ..+. .+.........+.. .+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~----------------------------------~~~ 48 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA----------------------------------ARP 48 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh----------------------------------cCC
Confidence 35667777778888888888766 5422 34433333222211 234
Q ss_pred EEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001222 795 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 871 (1120)
Q Consensus 795 ~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 871 (1120)
+++++|..+++.++....+.+.. ..... ...+..............+.|...++.||+....+...+..+..+
T Consensus 49 dlvllD~~lp~~~g~~~~~~lr~---~~~~~-~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 49 DVAVLDVRLPDGNGIELCRDLLS---RMPDL-RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp SEEEECSEETTEEHHHHHHHHHH---HCTTC-EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH---hCCCC-cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 68889999988776433333322 11122 223333333344445566788888899999999999888877654
No 342
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.44 E-value=1.3e+02 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=32.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHh
Q 001222 967 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 1007 (1120)
Q Consensus 967 ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~ 1007 (1120)
.|+-|.+..-....++-++..||+|..+.|.++|+..++..
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 34555566666777888899999999999999999988653
No 343
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=29.27 E-value=86 Score=32.01 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=40.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.||+| . -||+.-- ++.+++|+.. .+|||+=-.-.+.++..+|+++||+..-+
T Consensus 127 ~PD~i--E-iLPGi~p-~iI~~i~~~~------~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 127 QPDCI--E-LLPGIIP-EQVQKMTQKL------HIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp CCSEE--E-EECTTCH-HHHHHHHHHH------CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCCEE--E-ECCchhH-HHHHHHHHhc------CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 68987 2 2576543 6788888642 58999877778899999999999998765
No 344
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=28.94 E-value=42 Score=36.15 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1106 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~ 1106 (1120)
+.++.++++|+.. .++||++++=.. .+....+|.++|+|+.+.=-...++....+..
T Consensus 81 ~~~~~v~~ir~~~-----~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 81 DCFDIITKVRAQH-----PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHHHHHC-----TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 3477888888641 258999997532 25667899999999999977777765544433
No 345
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=28.68 E-value=1.9e+02 Score=29.77 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+++.++++++. ++||++.-+-.+.++..+++++|+|.++.
T Consensus 175 ~~~~i~~~~~~-------~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 175 DVALIEALCKA-------GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CHHHHHHHHHT-------TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 36778888752 48999988888899999999999999875
No 346
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=28.60 E-value=53 Score=35.23 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecc------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
+++.+++||+.. .++||++++-. ........|.++|+|+++.=....+++...+..+
T Consensus 81 ~~~~v~~ir~~~-----~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKH-----PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHC-----SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 456677887641 24899888622 2256778899999999999877766655544433
No 347
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.43 E-value=84 Score=34.37 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1117 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1117 (1120)
++.++.|+.. +..||.+-... .++..+++++|+|-.+.--++++++.+++..+-.+..-+++|
T Consensus 196 ~Av~~ar~~~-----p~~kIeVEv~t--l~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~~~v~leaSG 258 (300)
T 3l0g_A 196 LAIQRLRKNL-----KNEYIAIECDN--ISQVEESLSNNVDMILLDNMSISEIKKAVDIVNGKSVLEVSG 258 (300)
T ss_dssp HHHHHHHHHS-----SSCCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHhC-----CCCCEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcCceEEEEEC
Confidence 5667777653 24678876653 577889999999999999999999999998765444445544
No 348
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.40 E-value=68 Score=34.90 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred ccEEEE-eCCCCCCCH-HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1032 FDLILM-DCQMPKMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1032 ~DlILm-D~~MP~mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
+|.|+. |-+.-...| -++.++.|+.. +..||.+-.. +.++..+++++|+|..+..-+++++|.+.+..+-.
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~-----~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~~ 241 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLD-----SNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIARG 241 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHC-----TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTT
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhC-----CCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhcC
Confidence 454444 433333333 35667777652 2467776443 33677889999999999999999999998876644
Q ss_pred cCCCCCCC
Q 001222 1110 NMPSEATG 1117 (1120)
Q Consensus 1110 ~~~~~~~~ 1117 (1120)
+..-+++|
T Consensus 242 ~v~ieaSG 249 (287)
T 3tqv_A 242 KVALEVSG 249 (287)
T ss_dssp TCEEEEES
T ss_pred CceEEEEC
Confidence 44445544
No 349
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=27.74 E-value=5.8e+02 Score=27.37 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=49.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHH
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-KPIDSERMVSTILRL 1107 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KPi~~~~L~~~I~~l 1107 (1120)
.+|.|++|++=...+--++...++.... ...++++=+...+..+..+++++|++..+. |--+.+++...+..+
T Consensus 60 GaD~v~lDlEh~~~~~~~~~~~l~a~~~----~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 60 GFDWLLIDGEHAPNNVQTVLTQLQAIAP----YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp CCSEEEEESSSSSCCHHHHHHHHHHHTT----SSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred CCCEEEEeCCCccchHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 7999999997655555555555554322 235666666667788999999999997655 323677766555443
No 350
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=27.32 E-value=38 Score=36.84 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=47.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-
Q 001222 965 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK- 1043 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~- 1043 (1120)
-++.+||-++.....+++-++...-..+...|+.+++..+.. ...++|+||+|-=--.
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------------------~~~~fdLVfiDPPYe~k 172 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------------------PPEKRGLIFIDPSYERK 172 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------------------CTTSCEEEEECCCCCST
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------------------CCCCccEEEECCCCCCC
Confidence 489999999999999998887644445556788888876631 1236999999952221
Q ss_pred CCHHHHHHHHHh
Q 001222 1044 MDGYEATIEIRK 1055 (1120)
Q Consensus 1044 mdG~e~~~~IR~ 1055 (1120)
.+.-++++.|.+
T Consensus 173 ~~~~~vl~~L~~ 184 (283)
T 2oo3_A 173 EEYKEIPYAIKN 184 (283)
T ss_dssp THHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 233444445544
No 351
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=27.11 E-value=3.6e+02 Score=29.93 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred HhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC---------CCC-------CCHH
Q 001222 985 EKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---------MPK-------MDGY 1047 (1120)
Q Consensus 985 ~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~---------MP~-------mdG~ 1047 (1120)
++.|..+. .+.+.++|..+.+. ..|.|+.+-. .|. .+.+
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~------------------------GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~ 197 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA------------------------GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLL 197 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT------------------------TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHH
T ss_pred HHCCCeEEEECCCHHHHHHHHHc------------------------CCCEEEEeCCCcCCcCCCcccccccccccccHH
Confidence 34566544 46777776655532 5788888531 110 2348
Q ss_pred HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1048 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1048 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
++++++++. .++|||+.-+-.+.++..+++++|+|.+..
T Consensus 198 ~~l~~i~~~------~~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 198 SLLAQVREA------VDIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHH------CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHh------cCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 888888864 258999888877899999999999998763
No 352
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=27.03 E-value=88 Score=32.71 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHHHH
Q 001222 982 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIEIR 1054 (1120)
Q Consensus 982 ~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-------~e~~~~IR 1054 (1120)
..+++.|..+-.+-+...-++.++... ...|+|+...--|+.+| ++-++++|
T Consensus 106 ~~i~~~G~k~gval~p~t~~e~l~~~l---------------------~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr 164 (228)
T 3ovp_A 106 KDIRENGMKVGLAIKPGTSVEYLAPWA---------------------NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLR 164 (228)
T ss_dssp HHHHHTTCEEEEEECTTSCGGGTGGGG---------------------GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHH
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHh---------------------ccCCeEEEeeecCCCCCcccCHHHHHHHHHHH
Confidence 445667887776665444344433221 14788887666787766 33455566
Q ss_pred hcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1055 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1055 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
+.. .+++ |.+.+--..+....|.++|+|.++.
T Consensus 165 ~~~-----~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 165 TQF-----PSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp HHC-----TTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred Hhc-----CCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 532 2344 5677777788899999999999876
No 353
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=26.99 E-value=5.9e+02 Score=27.03 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE---eCCCCCCCHHHHHHHHH
Q 001222 979 VACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM---DCQMPKMDGYEATIEIR 1054 (1120)
Q Consensus 979 ~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILm---D~~MP~mdG~e~~~~IR 1054 (1120)
.+..+-..+|.+ .+.+.|.+|.-.++.. ..++|=. |+.--..| .+.+.+++
T Consensus 144 ~l~~~A~~lGl~~LvEVh~~~El~rAl~~------------------------~a~iIGINNRnL~tf~vd-l~~t~~L~ 198 (258)
T 4a29_A 144 SLLEYARSYGMEPLILINDENDLDIALRI------------------------GARFIGIMSRDFETGEIN-KENQRKLI 198 (258)
T ss_dssp HHHHHHHHTTCCCEEEESSHHHHHHHHHT------------------------TCSEEEECSBCTTTCCBC-HHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhcchHHHHHHHhcC------------------------CCcEEEEeCCCccccccC-HHHHHHHH
Confidence 344555678887 4468999987777652 4566643 22222333 56677777
Q ss_pred hcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1055 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1055 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
..-+ ..+.+|+-++-.+.+|..++.++|+|+||.-
T Consensus 199 ~~ip----~~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 199 SMIP----SNVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TTSC----TTSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred hhCC----CCCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 6543 2577899999999999999999999999974
No 354
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=26.61 E-value=1.2e+02 Score=31.89 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC----C-CCCHHHHHH
Q 001222 979 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM----P-KMDGYEATI 1051 (1120)
Q Consensus 979 ~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M----P-~mdG~e~~~ 1051 (1120)
.....|++.|+.+.. ...|...+..+... +||.|=+|-.+ . ......+++
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l-----------------------~~d~iKiD~~~v~~~~~~~~~~~~~~ 199 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTRL-----------------------PFDTLKIDRYFVRTMGNNAGSAKIVR 199 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHHS-----------------------CCCEEEECHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHhC-----------------------CCCEEEECHHHHhhhhcCchHHHHHH
Confidence 344567888998765 45666777777653 79999999532 1 112344556
Q ss_pred HHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEE----EECCCCHHHHHHHHHH
Q 001222 1052 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY----LTKPIDSERMVSTILR 1106 (1120)
Q Consensus 1052 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y----L~KPi~~~~L~~~I~~ 1106 (1120)
.|...... ..+.+| ..+-.+.++...+.+.|+|.+ +.||.+.+++...+..
T Consensus 200 ~i~~~a~~---~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 200 SVVKLGQD---LDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHH---TTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHH---CCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 66554333 235555 466677888888999999854 7899999999877754
No 355
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=26.52 E-value=64 Score=29.94 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=65.4
Q ss_pred cccCcEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001222 961 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1040 (1120)
Q Consensus 961 ~~~~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~ 1040 (1120)
.+.+..+|+-=-++..|.+++++|+..|.++..+... .....||++|+|-
T Consensus 4 LLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der-----------------------------~~~~eyDi~lTDn- 53 (117)
T 2kx7_A 4 LLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER-----------------------------LISQDYDIFLTDN- 53 (117)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS-----------------------------SSCCCCSEEEEES-
T ss_pred cccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc-----------------------------CCCCcccEEEecC-
Confidence 4678899999999999999999999999988876421 0235799999995
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHhhc
Q 001222 1041 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLTKN 1110 (1120)
Q Consensus 1041 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~-~~L~~~I~~l~~~ 1110 (1120)
|. + ..-+++.|++.... ++.=...|+.--|++ +.|..+|.-++++
T Consensus 54 -p~----------~--------~~~~tLLL~~d~~G------~~~l~p~~irvNyN~s~alidAIllLIEq 99 (117)
T 2kx7_A 54 -PS----------N--------LTASGLLLSDDESG------VREIGPGQLCVNFNMSNAMQEAVLQLIEV 99 (117)
T ss_dssp -GG----------G--------CSSSEEEECTTCSS------EEEEETTEEEECSSCHHHHHHHHHHHHHH
T ss_pred -cc----------c--------cCcCeEEEecCccc------ccccCCCeEEEeccchHHHHHHHHHHHHH
Confidence 21 1 23468888875432 112234566656664 5677788777654
No 356
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=26.19 E-value=4e+02 Score=24.73 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=39.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1108 (1120)
..|+|+.-..-+ .+-..++..+|+.. +.++||+... +.+......++|+|..+. ...++...+.+.+
T Consensus 71 ~ad~vi~~~~~~-~~n~~~~~~a~~~~-----~~~~iiar~~--~~~~~~~l~~~G~d~vi~---p~~~~a~~i~~~l 137 (140)
T 3fwz_A 71 CAKWLILTIPNG-YEAGEIVASARAKN-----PDIEIIARAH--YDDEVAYITERGANQVVM---GEREIARTMLELL 137 (140)
T ss_dssp GCSEEEECCSCH-HHHHHHHHHHHHHC-----SSSEEEEEES--SHHHHHHHHHTTCSEEEE---HHHHHHHHHHHHH
T ss_pred cCCEEEEECCCh-HHHHHHHHHHHHHC-----CCCeEEEEEC--CHHHHHHHHHCCCCEEEC---chHHHHHHHHHHh
Confidence 578888764322 12334566777653 2467887664 345566777899998875 2334444444443
No 357
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=26.15 E-value=5.3e+02 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1044 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1044 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
....++++++++.. .++|||+..+-.+.+|..+++.+|||.++.
T Consensus 236 ~~~~~~l~~v~~~~-----~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 236 ISTAASLAEIRSEF-----PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp CCHHHHHHHHHHHC-----TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHhc-----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 45678888887632 259999999999999999999999999875
No 358
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=26.14 E-value=1.7e+02 Score=27.77 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=45.0
Q ss_pred CccEEEEeCCCCCCCH------------------HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPKMDG------------------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG------------------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+.+|+.|+.---.++ .++++++|+. .++++++|+.........+-..|.+.|+.
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------g~~~~i~T~~~~~~~~~~l~~~gl~~~~~ 80 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKM-------GITLAVISGRDSAPLITRLKELGVEEIYT 80 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTT-------TCEEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHC-------CCEEEEEeCCCcHHHHHHHHHcCCHhhcc
Confidence 4788999987544432 3677777752 47899999988777766777889999986
Q ss_pred CCCCHHHHHHHH
Q 001222 1093 KPIDSERMVSTI 1104 (1120)
Q Consensus 1093 KPi~~~~L~~~I 1104 (1120)
.+-...+....+
T Consensus 81 ~~kp~~~~~~~~ 92 (162)
T 2p9j_A 81 GSYKKLEIYEKI 92 (162)
T ss_dssp CC--CHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 544444443333
No 359
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=25.84 E-value=27 Score=32.91 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=25.0
Q ss_pred CcccccccccccCCCCCCCcEEEEEEeeccchhH
Q 001222 229 NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSV 262 (1120)
Q Consensus 229 ~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i 262 (1120)
..+.+.++.||++. +|+++||+.|...+..+
T Consensus 98 ~g~~~~~~~PV~~~---~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 98 LGSSLRGKSPIQDA---TGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp TEEEEEEEEEEECT---TCCEEEEEEEEEEGGGC
T ss_pred ceeeEEEEEeEECC---CCCEEEEEEEEEEhHHh
Confidence 45788888899986 78999999998776543
No 360
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=25.66 E-value=88 Score=34.01 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
-++.++.|+..+ ...+|.+ ... +.++..+++++|+|..+.-+++++.+.+.+..+-.
T Consensus 180 ~~av~~ar~~~~----~~~~I~V-EV~-tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~ 236 (285)
T 1o4u_A 180 ERAVQEVRKIIP----FTTKIEV-EVE-NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKD 236 (285)
T ss_dssp HHHHHHHHTTSC----TTSCEEE-EES-SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCceEEE-EeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 456777776532 1245555 444 36788899999999999999999999988877644
No 361
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=25.33 E-value=1.6e+02 Score=30.83 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=54.9
Q ss_pred HHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHHHHh
Q 001222 983 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIEIRK 1055 (1120)
Q Consensus 983 ~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-------~e~~~~IR~ 1055 (1120)
.+++.|..+-.+-|...-++.++... +....|+|+.=.--|+-+| ++-++++|+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l-------------------~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~ 169 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPIL-------------------DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRK 169 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHH-------------------TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHh-------------------hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHH
Confidence 66778998887765543333333221 0014788866555576555 455566665
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEEC
Q 001222 1056 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1093 (1120)
Q Consensus 1056 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1093 (1120)
... +++ |.+.+--..+...+|.++|+|-++.=
T Consensus 170 ~~~-----~~~-I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 170 KYK-----NLN-IQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp HCT-----TCE-EEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred hcc-----CCe-EEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 431 344 55778888899999999999998763
No 362
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=25.18 E-value=1.5e+02 Score=30.22 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=46.4
Q ss_pred CccEEEEeCCCCCCCHH-------HHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHH
Q 001222 1031 RFDLILMDCQMPKMDGY-------EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSE 1098 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~-------e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~ 1098 (1120)
..|.|+.+...|+.+|. +-.+++|+.....+ .++||++ ++--..++..++.++|+|.++. +.-++.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~i~v-~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~ 208 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKG-LSFDIEV-DGGVDNKTIRACYEAGANVFVAGSYLFKASDLV 208 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTT-CCCEEEE-ESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcC-CCceEEE-ECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHH
Confidence 47899988877776652 44566665432111 2467664 5555577888899999999875 444555
Q ss_pred HHHHHHHH
Q 001222 1099 RMVSTILR 1106 (1120)
Q Consensus 1099 ~L~~~I~~ 1106 (1120)
+-.+.+++
T Consensus 209 ~a~~~~~~ 216 (220)
T 2fli_A 209 SQVQTLRT 216 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 363
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.45 E-value=45 Score=22.71 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHh
Q 001222 20 HLIIVFLLLALLSW 33 (1120)
Q Consensus 20 ~~~~~~~l~~~~~~ 33 (1120)
-|..+|+|+|+|.|
T Consensus 8 viaglvalltflaf 21 (32)
T 2lx0_A 8 VIAGLVALLTFLAF 21 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36778888888876
No 364
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=24.32 E-value=1.4e+02 Score=31.67 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC--CCC--------------------HHHHHHHHHh
Q 001222 998 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP--KMD--------------------GYEATIEIRK 1055 (1120)
Q Consensus 998 ~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP--~md--------------------G~e~~~~IR~ 1055 (1120)
.+.++.+.+. ..|.|-++.-.+ .|| +++.++++|+
T Consensus 35 ~~~~~~l~~~-----------------------Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~ 91 (262)
T 1rd5_A 35 AEALRLLDGC-----------------------GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTP 91 (262)
T ss_dssp HHHHHHHHHT-----------------------TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHc-----------------------CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q ss_pred cccccCCCCcceEEEeccCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001222 1056 SESEHGARNIPIVALTAHAMNA--DEKKCLGVGMNAYLTKPIDSERMVSTILRL 1107 (1120)
Q Consensus 1056 ~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1107 (1120)
. .++|+++++-..... ...+|.++|+|+++.-....+++...+..+
T Consensus 92 ~------~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 92 E------LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp G------CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred c------CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 365
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=24.31 E-value=1e+02 Score=32.48 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.0
Q ss_pred cc-EEEEeCCCCCCC---HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1032 FD-LILMDCQMPKMD---GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1032 ~D-lILmD~~MP~md---G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.| +.+.|....... -++.+++|++. ..+||++...-.+.++..+++++|+|..+.
T Consensus 44 a~~i~v~d~~~~~~~~g~~~~~i~~i~~~------~~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 44 AGEILLTSIDRDGTKSGYDTEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp CSEEEEEETTTSSCSSCCCHHHHHHHGGG------CCSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred CCEEEEEecCcccCCCcccHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 44 455676543221 17788888753 258999988878888899999999999876
No 366
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=24.02 E-value=3.8e+02 Score=29.85 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=42.6
Q ss_pred CccEEEEeCCC-----CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQM-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|.+.-.- -....++++.++++... .++|||+-.+-.+..|..+++.+|||....
T Consensus 238 GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~----~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 238 NVQGIVVSNHGGRQLDEVSASIDALREVVAAVK----GKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHT----TSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhC----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46666663210 12245788888876432 259999999999999999999999999875
No 367
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=23.26 E-value=6.8e+02 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=49.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHH
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-KPIDSERMVSTILRL 1107 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KPi~~~~L~~~I~~l 1107 (1120)
.+|.|++|++=...+--++...++.... ...++++=+...+..+..+++++|++..+. |=-+.+++...+..+
T Consensus 39 GaD~v~lDlE~~~~~~~~~~~~~~a~~~----~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 39 GYDWLLIDGEHAPNTIQDLYHQLQAVAP----YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp CCSEEEEETTTSCCCHHHHHHHHHHHTT----SSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 7999999998766666566565665432 134555555566788899999999997554 333677766555443
No 368
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=23.10 E-value=61 Score=35.13 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=51.1
Q ss_pred CcEEEEEeCC-----HHHHHHHHHHHHhcC-CEEEEECCHHHH--HHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001222 964 GLRILLAEDT-----PLIQIVACKILEKVG-ATVSVVPDGLQA--VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1035 (1120)
Q Consensus 964 ~~~ILIVdD~-----~~n~~~l~~~L~~~g-~~v~~a~ng~eA--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI 1035 (1120)
.++|||+.-. +.....+..+|++.| |+|.++.+.... .+.+. ..-..||+|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---------------------~~L~~~D~v 62 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---------------------LDFSPYQLV 62 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---------------------CCCTTCSEE
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---------------------hhhhcCCEE
Confidence 4789999762 555678899999998 999999774200 00110 012369999
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEec
Q 001222 1036 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1072 (1120)
Q Consensus 1036 LmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa 1072 (1120)
+++..+...+- +..+.|++.-.. ..++|++=+
T Consensus 63 V~~~~~~~l~~-~~~~~l~~yV~~----Ggglv~~H~ 94 (281)
T 4e5v_A 63 VLDYNGDSWPE-ETNRRFLEYVQN----GGGVVIYHA 94 (281)
T ss_dssp EECCCSSCCCH-HHHHHHHHHHHT----TCEEEEEGG
T ss_pred EEeCCCCcCCH-HHHHHHHHHHHc----CCCEEEEec
Confidence 99987766543 233444443322 256777643
No 369
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=22.87 E-value=96 Score=34.25 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1117 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1117 (1120)
-++.++.|+..+ ..||++.... .++..+++++|+|..+.--+++++|.++++.+-.+..-+++|
T Consensus 219 ~~Av~~ar~~~p-----~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l~~~v~ieaSG 282 (320)
T 3paj_A 219 RQAISTAKQLNP-----GKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKINAGRAALENSG 282 (320)
T ss_dssp HHHHHHHHHHST-----TSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHHhCC-----CCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEC
Confidence 367777776533 3577776654 367788999999999999999999998887643333334444
No 370
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=22.85 E-value=3.5e+02 Score=29.29 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=45.3
Q ss_pred cEEEEEEeeccccCchHHHHHhhhhhhhhccceeEeeeccCCCchhhHhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001222 794 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 868 (1120)
Q Consensus 794 ~~~~~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 868 (1120)
.+++++|+.++++++....+.++...... ...+ .+..............+.|..-++.||+....+...+...
T Consensus 64 ~dlvl~D~~mp~~~G~~~~~~l~~~~~~~-~~~i-i~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 64 PTVILQDLVMPGVDGLTLLAAYRGNPATR-DIPI-IVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHTTSTTTT-TSCE-EEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCcccC-CCcE-EEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 46889999999988754444433211111 1222 2333333334445566788899999999998888776654
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=22.38 E-value=1.5e+02 Score=34.11 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=19.8
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhcCCEEEEEC
Q 001222 964 GLRILLAEDTP---LIQIVACKILEKVGATVSVVP 995 (1120)
Q Consensus 964 ~~~ILIVdD~~---~n~~~l~~~L~~~g~~v~~a~ 995 (1120)
+.+|++||-++ .....+...-...|..+..+.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~ 163 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD 163 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCC
Confidence 78999999886 222333333445677766654
No 372
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=22.32 E-value=55 Score=31.28 Aligned_cols=24 Identities=4% Similarity=-0.071 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 001222 395 CILVIGCICILILTNGVSKEMKLR 418 (1120)
Q Consensus 395 ~~~li~~l~~~~l~~~i~~~~~l~ 418 (1120)
+++++++++++++.+.+.++++..
T Consensus 67 ~~~~~~~~~~~~~~~~i~~pl~~l 90 (163)
T 2f95_B 67 LLGINLGLVAATLGGDTAASLSTL 90 (163)
T ss_dssp HHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666655443
No 373
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.07 E-value=1.4e+02 Score=32.33 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=20.4
Q ss_pred cCcEEEEEeCCH---HHHHHHHHHHHhcCCEEEEE
Q 001222 963 EGLRILLAEDTP---LIQIVACKILEKVGATVSVV 994 (1120)
Q Consensus 963 ~~~~ILIVdD~~---~n~~~l~~~L~~~g~~v~~a 994 (1120)
.+.+|+++|-++ .....+....++.|..+...
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 356899999883 33344445556677777655
No 374
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.92 E-value=1.9e+02 Score=33.83 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=42.3
Q ss_pred CccEEEEeCCCCCCCH-HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDCQMPKMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
.+|+|.+|...|...+ .+.+++||+.. +++||++-+ -...+....+.++|+|....
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~-----p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAY-----PHLEIIGGN-VATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHC-----TTCCEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHC-----CCceEEEcc-cCcHHHHHHHHHhCCCEEEE
Confidence 6999999998876543 57888888753 357887732 34567788899999999985
No 375
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=21.86 E-value=67 Score=32.58 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=37.9
Q ss_pred EeCCCCC--CCHHHHHHHHHhcccccCCCCcceEE--EeccCCHHHHHHHHHcCCCEEEECCCCH
Q 001222 1037 MDCQMPK--MDGYEATIEIRKSESEHGARNIPIVA--LTAHAMNADEKKCLGVGMNAYLTKPIDS 1097 (1120)
Q Consensus 1037 mD~~MP~--mdG~e~~~~IR~~~~~~~~~~ipIIa--lTa~~~~~~~~~~l~aG~d~yL~KPi~~ 1097 (1120)
+++.+|- .+|.+.+++||+.. ++.||++ .+.+.-......+.++|+|....-|...
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~~-----~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKAH-----PDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHHS-----TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred EEECcHHHHhhCHHHHHHHHHhC-----CCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 6676663 46888999999752 2467775 4432123347789999999998767654
No 376
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=21.47 E-value=1.7e+02 Score=31.77 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=46.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECC
Q 001222 1031 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1094 (1120)
Q Consensus 1031 ~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1094 (1120)
..++|.+|..- .--..+++++||+... ..+||++=-+-.+.++..+++++|||..+.--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~----~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLG----PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSC----TTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcC----CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 46899999865 3334689999997531 14899988788899999999999999999754
No 377
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=21.20 E-value=2.5e+02 Score=31.80 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-CCC
Q 001222 1045 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-KPI 1095 (1120)
Q Consensus 1045 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KPi 1095 (1120)
.-++++.++++... .++|||+-.+-.+..|..+++..|||.... .|+
T Consensus 292 ~~~~~l~~v~~av~----~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 292 ATIDVLPEIVEAVE----GKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp CHHHHHHHHHHHHT----TSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred ChHHHHHHHHHHcC----CCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 35778888876432 259999999999999999999999999865 454
No 378
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=21.06 E-value=5.9e+02 Score=26.27 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=56.9
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001222 991 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1070 (1120)
Q Consensus 991 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1070 (1120)
|....+.++|+...+...+ ...++|=..++-| ++.+++++||+..+ . ++|..
T Consensus 18 Vir~~~~~~a~~~a~al~~--------------------gGi~~iEvt~~t~--~a~~~I~~l~~~~p-----~-~~IGA 69 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVA--------------------GGVHLLEVTLRTE--AGLAAISAIKKAVP-----E-AIVGA 69 (217)
T ss_dssp EECCSCGGGHHHHHHHHHH--------------------TTCCEEEEETTST--THHHHHHHHHHHCT-----T-SEEEE
T ss_pred EEEcCCHHHHHHHHHHHHH--------------------cCCCEEEEeCCCc--cHHHHHHHHHHHCC-----C-CeEee
Confidence 4445566667666654322 3577777666655 79999999997532 3 46665
Q ss_pred eccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001222 1071 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1105 (1120)
Q Consensus 1071 Ta~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1105 (1120)
-.-.+.++.+++.++|++-.++ |-...++.+.-+
T Consensus 70 GTVlt~~~a~~ai~AGA~fivs-P~~~~evi~~~~ 103 (217)
T 3lab_A 70 GTVCTADDFQKAIDAGAQFIVS-PGLTPELIEKAK 103 (217)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEE-SSCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHcCCCEEEe-CCCcHHHHHHHH
Confidence 5556788999999999987776 554455554433
No 379
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=21.03 E-value=3.9e+02 Score=29.85 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=42.8
Q ss_pred CccEEEEeC----CCC-CCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFDLILMDC----QMP-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~DlILmD~----~MP-~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..|.|.+.- ++. ...-++++.++++... .++|||+-.+-.+..|..+++..|||.++.
T Consensus 250 Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~----~~ipVia~GGI~~g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 250 GASGIWVSNHGARQLYEAPGSFDTLPAIAERVN----KRVPIVFDSGVRRGEHVAKALASGADVVAL 312 (368)
T ss_dssp TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHT----TSSCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhC----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 467666632 111 2235788888886532 259999999999999999999999999876
No 380
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=20.84 E-value=7.2e+02 Score=25.83 Aligned_cols=107 Identities=8% Similarity=0.033 Sum_probs=66.9
Q ss_pred EEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH
Q 001222 968 LLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1046 (1120)
Q Consensus 968 LIVdD~~~n~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG 1046 (1120)
|+.+|.- + . +...|.+.+. -|....+.+++++..+...+ ...++|=..+.-| ++
T Consensus 18 ~~~~~~m-~-~-~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~--------------------gGi~~iEvt~~t~--~a 72 (232)
T 4e38_A 18 LYFQSMM-S-T-INNQLKALKVIPVIAIDNAEDIIPLGKVLAE--------------------NGLPAAEITFRSD--AA 72 (232)
T ss_dssp --CCCCH-H-H-HHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--------------------TTCCEEEEETTST--TH
T ss_pred hHHHHHH-H-H-HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--------------------CCCCEEEEeCCCC--CH
Confidence 4555552 2 2 3344555554 46667888889888776532 3577776666544 78
Q ss_pred HHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 001222 1047 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1106 (1120)
Q Consensus 1047 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~ 1106 (1120)
.|+.++||+..+ . .+|.--.--+.++.+.|.++|++-.++ |-...++....++
T Consensus 73 ~e~I~~l~~~~~-----~-~~iGaGTVlt~~~a~~Ai~AGA~fIvs-P~~~~~vi~~~~~ 125 (232)
T 4e38_A 73 VEAIRLLRQAQP-----E-MLIGAGTILNGEQALAAKEAGATFVVS-PGFNPNTVRACQE 125 (232)
T ss_dssp HHHHHHHHHHCT-----T-CEEEEECCCSHHHHHHHHHHTCSEEEC-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----C-CEEeECCcCCHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHH
Confidence 999999997532 2 344444455688889999999976665 6544555554443
No 381
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=20.82 E-value=3.2e+02 Score=29.86 Aligned_cols=108 Identities=12% Similarity=0.094 Sum_probs=64.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCEEEEE--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001222 964 GLRILLAEDTPLIQIVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1041 (1120)
Q Consensus 964 ~~~ILIVdD~~~n~~~l~~~L~~~g~~v~~a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~M 1041 (1120)
+.+++|+.+.+. ..++.+++++.-.|... -+..+..+.+. ..|+.++--.-
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~-------------------------~adv~v~ps~~ 292 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMR-------------------------SADVYCAPHLG 292 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHH-------------------------HSSEEEECCCS
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHH-------------------------HCCEEEecCCC
Confidence 457777777665 44555554432223332 23344455554 35777764210
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001222 1042 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1110 (1120)
Q Consensus 1042 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1110 (1120)
.+.-|.-+++.+-. .+|||+... ....+.++.|-.+++..|-+.++|.++|.+++.+
T Consensus 293 ~e~~~~~~~Ea~a~--------G~PvI~~~~----~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 293 GESFGIVLVEAMAA--------GTAVVASDL----DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp CCSSCHHHHHHHHH--------TCEEEECCC----HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred CCCCchHHHHHHHc--------CCCEEEecC----CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 12224445555442 478886322 3455677788899999999999999999998754
No 382
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=20.80 E-value=4.6e+02 Score=29.35 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1046 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1046 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..+++..++... .++|||+-.+-.+..|..+++.+|||.+..
T Consensus 265 t~~~L~~v~~~~-----~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 265 TAQVLLNAQPLM-----DKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHHHHHHHGGGT-----TTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhc-----CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 446666665431 258999999999999999999999999876
No 383
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=20.76 E-value=5.7e+02 Score=24.57 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=69.2
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhcCCEEEE-E--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001222 964 GLRILLAEDTP-LIQIVACKILEKVGATVSV-V--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1039 (1120)
Q Consensus 964 ~~~ILIVdD~~-~n~~~l~~~L~~~g~~v~~-a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~ 1039 (1120)
..+++++.+.+ .....++.++++.+ .|.. . -+..+..+.+. ..|++++-.
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~-------------------------~ad~~l~ps 123 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG-------------------------SVDFVIIPS 123 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT-------------------------TCSEEEECC
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH-------------------------HCCEEEECC
Confidence 46788887754 24566777888877 5555 3 34445555553 478888744
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001222 1040 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1109 (1120)
Q Consensus 1040 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1109 (1120)
.. +.-|.-+++.+. ..+|||+.- . ......+ .|-.+++..|-+.++|.++|.+++.
T Consensus 124 ~~-e~~~~~~~Ea~a--------~G~PvI~~~-~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 124 YF-EPFGLVALEAMC--------LGAIPIASA-V---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp SC-CSSCHHHHHHHH--------TTCEEEEES-C---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CC-CCccHHHHHHHH--------CCCCEEEeC-C---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 32 222455555554 247877642 2 2333444 7889999999999999999999886
No 384
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.72 E-value=1.2e+02 Score=31.61 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=41.7
Q ss_pred CccEEEEeC---CC-CCC-CHHHHHHHHHhcccccCCCCcceE--EEeccCCHHHHHHHHHcCCCEEEECCC--CHHHHH
Q 001222 1031 RFDLILMDC---QM-PKM-DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMV 1101 (1120)
Q Consensus 1031 ~~DlILmD~---~M-P~m-dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~KPi--~~~~L~ 1101 (1120)
..|+|=+|+ .. |.+ .|.+.+++||+.. +.|+. +++.+ -......|.++|+|....-.. ..+...
T Consensus 30 Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~------~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~~~~~~~~ 102 (230)
T 1tqj_A 30 GADWIHVDVMDGRFVPNITIGPLIVDAIRPLT------KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEHNASPHLH 102 (230)
T ss_dssp TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC------CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECSTTTCTTHH
T ss_pred CCCEEEEEEEecCCCcchhhhHHHHHHHHhhc------CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcccccchhHH
Confidence 355554444 22 232 3679999999753 24555 66643 234567899999999866554 333444
Q ss_pred HHHHHH
Q 001222 1102 STILRL 1107 (1120)
Q Consensus 1102 ~~I~~l 1107 (1120)
..++.+
T Consensus 103 ~~~~~i 108 (230)
T 1tqj_A 103 RTLCQI 108 (230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 385
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=20.67 E-value=3.9e+02 Score=29.93 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=46.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC----------CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccE
Q 001222 965 LRILLAEDTPLIQIVACKILEKVG----------ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDL 1034 (1120)
Q Consensus 965 ~~ILIVdD~~~n~~~l~~~L~~~g----------~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 1034 (1120)
.+|..||=++....+.++.|...+ ---....|+.+.++.+.+. ...||+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~---------------------~~~fDv 270 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---------------------GREFDY 270 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---------------------TCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc---------------------CCCceE
Confidence 489999999999999999875432 1234568888877654211 247999
Q ss_pred EEEeCCC-CC------CCHHHHHHHH
Q 001222 1035 ILMDCQM-PK------MDGYEATIEI 1053 (1120)
Q Consensus 1035 ILmD~~M-P~------mdG~e~~~~I 1053 (1120)
|++|.-- |. .-..++.+.+
T Consensus 271 II~D~~d~P~~~~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 271 VINDLTAVPISTSPEEDSTWEFLRLI 296 (364)
T ss_dssp EEEECCSSCCCCC----CHHHHHHHH
T ss_pred EEECCCCcccCcCchhhhHHHHHHHH
Confidence 9999865 42 2345777776
No 386
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=20.36 E-value=2.3e+02 Score=30.02 Aligned_cols=104 Identities=14% Similarity=0.237 Sum_probs=59.5
Q ss_pred HHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHHHH
Q 001222 982 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIEIR 1054 (1120)
Q Consensus 982 ~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~mdG-------~e~~~~IR 1054 (1120)
+..++.|..+-.+-+...-++.++... ...|+|++=---|+..| ++-++++|
T Consensus 128 ~~ir~~G~k~Gvalnp~Tp~e~l~~~l---------------------~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr 186 (246)
T 3inp_A 128 QLIKSFGIQAGLALNPATGIDCLKYVE---------------------SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEIS 186 (246)
T ss_dssp HHHHTTTSEEEEEECTTCCSGGGTTTG---------------------GGCSEEEEECSCTTC--CCCCTTHHHHHHHHH
T ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHH---------------------hcCCEEEEeeecCCCCCcccchHHHHHHHHHH
Confidence 334667777777666544444443211 14677764333466655 45556666
Q ss_pred hcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 001222 1055 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1108 (1120)
Q Consensus 1055 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1108 (1120)
+.....+ .+++ |.+.+--..+...+|.++|||-++. +-=++++-...+++.+
T Consensus 187 ~~~~~~~-~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i 243 (246)
T 3inp_A 187 KWISSTD-RDIL-LEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDEL 243 (246)
T ss_dssp HHHHHHT-SCCE-EEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHhcC-CCee-EEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHHH
Confidence 5432211 2343 5677777788899999999999886 3225555455555443
No 387
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=20.27 E-value=3.2e+02 Score=27.90 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=39.0
Q ss_pred Ccc-EEEEeCCCCCCC---HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1031 RFD-LILMDCQMPKMD---GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~md---G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
..| +.+.|....... ..+.+++||+. ..+||++-..-.+.++..+++++|+|....
T Consensus 46 G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~------~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 46 GADEIAILDITAAPEGRATFIDSVKRVAEA------VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp TCSCEEEEECCCCTTTHHHHHHHHHHHHHH------CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEEeCCccccCCcccHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 466 445555432222 36677777753 258999888778888889999999998873
No 388
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.25 E-value=4.7e+02 Score=31.26 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=64.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001222 964 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1036 (1120)
Q Consensus 964 ~~~ILIV----dD~~~n~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIL 1036 (1120)
+.+||++ |-+.+-..++..+|+..||+|.-. ...++.++++.+ ..+|+|.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~-----------------------~~~diVg 154 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE-----------------------VNADLIG 154 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH-----------------------HTCSEEE
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3578888 667777888889999999999754 345666666654 2799999
Q ss_pred EeCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHH-HH--HHcCCCEEEE
Q 001222 1037 MDCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEK-KC--LGVGMNAYLT 1092 (1120)
Q Consensus 1037 mD~~MP~m-d-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~-~~--l~aG~d~yL~ 1092 (1120)
+-+.|..- + --++.+++|+.. .++||++--+-...+... ++ .-.|+|.|-.
T Consensus 155 LS~l~t~~~~~m~~~i~~Lr~~g-----~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 155 LSGLITPSLDEMVNVAKEMERQG-----FTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp EECCSTHHHHHHHHHHHHHHHTT-----CCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred EEecCCCCHHHHHHHHHHHHHcC-----CCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 99988531 1 123445555521 358876655544443321 11 1129998864
No 389
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=20.01 E-value=1.4e+02 Score=30.86 Aligned_cols=66 Identities=8% Similarity=0.162 Sum_probs=47.3
Q ss_pred Ccc-EEEEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHc---CCCEEEE------CCCCH
Q 001222 1031 RFD-LILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLT------KPIDS 1097 (1120)
Q Consensus 1031 ~~D-lILmD~~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~------KPi~~ 1097 (1120)
..| +++++..-..+ -+++.++++++. .++|||+-.+-.+.++..+++++ |+|.++. .|..+
T Consensus 162 G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~------~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~ 235 (244)
T 2y88_A 162 GCSRFVVTDITKDGTLGGPNLDLLAGVADR------TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTL 235 (244)
T ss_dssp TCCCEEEEETTTTTTTSCCCHHHHHHHHTT------CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCCEEEEEecCCccccCCCCHHHHHHHHHh------CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCH
Confidence 456 55677653322 147888888853 25899999888888999999999 9998775 46665
Q ss_pred HHHHH
Q 001222 1098 ERMVS 1102 (1120)
Q Consensus 1098 ~~L~~ 1102 (1120)
.++.+
T Consensus 236 ~~~~~ 240 (244)
T 2y88_A 236 PQALA 240 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 390
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=20.00 E-value=8.7e+02 Score=26.44 Aligned_cols=90 Identities=18% Similarity=0.080 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhc-CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--C-
Q 001222 972 DTPLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--D- 1045 (1120)
Q Consensus 972 D~~~n~~~l~~~L~~~-g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlILmD~~MP~m--d- 1045 (1120)
|.....+.++.+-+.. +.-|.. +.+.++|..+.+. ..|.|.+-.. |+. +
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a------------------------Gad~Ivvs~h-gG~~~~~ 186 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA------------------------GADATKVGIG-PGKVCIT 186 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH------------------------TCSEEEECSS-CSTTCHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc------------------------CCCEEEEecC-CCceeec
Confidence 3344555665555544 333332 5567777666643 5787777321 221 1
Q ss_pred -----------HHHHHHHHHhcccccCCCCcceEEEeccCCHHHHHHHHHcCCCEEEE
Q 001222 1046 -----------GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1092 (1120)
Q Consensus 1046 -----------G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1092 (1120)
-++++.++++. .++|||+-.+-.+..|..+++.+|||....
T Consensus 187 ~~~~~~g~~g~~~~~l~~v~~~------~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 187 KIKTGFGTGGWQLAALRWCAKA------ASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp HHHHSCSSTTCHHHHHHHHHHT------CSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred ccccCcCCchhHHHHHHHHHHH------cCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 36677777753 259999999999999999999999998764
Done!