BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001223
(1120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
Length = 1020
Score = 1352 bits (3498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/1083 (66%), Positives = 820/1083 (75%), Gaps = 92/1083 (8%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+FYRWLAEKYPL+VADVIEEEPV I+G+KIPVDTSKPNPN LEYDNLYLDMNGIIH
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCFHPEDRP+PTTF+EVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
++KDA+D+AAEEERLR+EFEREGR+LPPK DSQVFDSNVITPGTEFM VLSIALQYY+HL
Sbjct: 121 SAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHL 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLN+D GW+ IKVILSDANVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML
Sbjct: 181 RLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHEVHFSILREVV+TPGQQ++CFLCGQ GH A+NCEGK K++AGE DEKGD KK
Sbjct: 241 LATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKK 300
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
PYQFLHIW LREYL+ E RIPNPPFEIDLE IVDDFIF+CFFVGNDFLPHMPTLEIREGA
Sbjct: 301 PYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGA 360
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
INLLMAVYKKEFR+ GYLTDG KP+L+RVE FIQAVGS+ED+IFQKRA HQR AER+K
Sbjct: 361 INLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVK 420
Query: 421 REKA--QARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSG 478
R+KA +R DD P QPD LVPV+RF GSRLAS P+PSP+Q ++ G S
Sbjct: 421 RDKAGKATKRMDDEAPTVQPD-LVPVARFSGSRLASAPTPSPFQSND---------GRSA 470
Query: 479 RPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPEEDK 538
KV RLS G+++GAAIV+ ENS E+D +ENKEE K KLKEL+R+KSDAFNSD EEDK
Sbjct: 471 PHQKVRRLSPGSSVGAAIVDVENSLESDERENKEELKTKLKELIREKSDAFNSDTTEEDK 530
Query: 539 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 598
VKLG+PGW+ERYYEEKF+ TPEE E RKDVVL+YTEGLCWVMHYY EGVCSWQWFYPY
Sbjct: 531 VKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPY 590
Query: 599 HYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISD 658
HYAPFASDLKDL + +I FELG PFKPFNQLLGVFP+ASSHALPE YR LMTDPNSPI D
Sbjct: 591 HYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIID 650
Query: 659 FYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVL 718
FYPTDFEVDMNGKR+SWQGIAKLPFIDE RLL+ V ++E TLT+EE RRNS M DMLF+
Sbjct: 651 FYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIA 710
Query: 719 LSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVA 778
SH L+ +++LD HC+QL +ERV+ K ++ P+LSDGMNGY++PC+G+ HPPVFRSP+
Sbjct: 711 TSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPME 770
Query: 779 SMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRP-- 836
MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP
Sbjct: 771 GMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMH 830
Query: 837 ------------HENGRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHGSPL 884
+ GR NP G++SGR LG AAHRLV+NSLQ M DR +
Sbjct: 831 NNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDRYQTPTDVPAPGY 889
Query: 885 PYAAAPYVPPVPSYQEYGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYA 944
Y YVPP+P YQ G PP GY+Q
Sbjct: 890 GYNPPQYVPPIP-YQHGGY---------------------------MAPPGAQGYAQ--- 918
Query: 945 SNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQG 1004
P +N G P PSG R+P P S S G
Sbjct: 919 ------------PAPYQNRGGYQPR---GPSG-------RFPSEPYQSQSREGQHASRGG 956
Query: 1005 GYS--GYQSPAAGSFNQWGGANQSMPRGYGQGQHHQRRDG---------GYQQYHDQQRN 1053
GYS ++ GG+ Q+ PRGY GQHH ++ G G +HDQ N
Sbjct: 957 GYSGNHQNQHQQQQWHGQGGSEQNNPRGY-NGQHHHQQGGDHDRRGRGRGSHHHHDQGGN 1015
Query: 1054 YSH 1056
H
Sbjct: 1016 PRH 1018
>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
Length = 1012
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/879 (63%), Positives = 677/879 (77%), Gaps = 37/879 (4%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDG--VKIPVDTSKPNPNGLEYDNLYLDMNGI 58
MGVP+FYRWL ++YPL + +VIEEEP+ ++G V IP+D+SKPNPNG EYDNLYLDMNGI
Sbjct: 1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60
Query: 59 IHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
IHPCFHPED+P+PTTF EVFQCMFDYIDRLFVMVRPRKLL+MAIDGVAPRAKMNQQR+RR
Sbjct: 61 IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120
Query: 119 FRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
FRA+KDAA++AAEEE+LR+EFEREG+KLPPK DSQVFDSNVITPGTEFMA LS AL+YYI
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYI 180
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
H+RLN+DPGW+ IKVILSDANVPGEGEHKIMSY+R +N PGY+PNT HCLYGLDADLIM
Sbjct: 181 HVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIM 240
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L+LATHE+HFSILREVVF PG++ KCFLCGQ GH AA+CEGK KRK GE + + VV
Sbjct: 241 LSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV 300
Query: 299 KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIRE 358
KKPY+F++IW LREYL+++ +IP + +L+ ++DDFIF+CFFVGNDFLPHMPTLEIRE
Sbjct: 301 KKPYEFVNIWILREYLEHDMQIPGA--KKNLDRLIDDFIFICFFVGNDFLPHMPTLEIRE 358
Query: 359 GAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAER 418
GAI LLM+VYK +FR+ YLTD SK +LR VE FI+AVG YE++IFQKRA++ QR +ER
Sbjct: 359 GAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQRQSER 418
Query: 419 IKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSG 478
+R+KA+ + D+ AQ SR SG + +LD+ S
Sbjct: 419 FRRDKARDKARDNARDNAQ-----------ASRQFSGK----------LVQLDSLDEVSD 457
Query: 479 RPHKVP-----RLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDN 533
H P RLS IG A VE ENS + + +N+E+ K KLK+LLRDK D F S N
Sbjct: 458 SLHSSPSRKYLRLSLDDNIGVANVETENSLKAEELDNEEDLKFKLKKLLRDKGDGFRSGN 517
Query: 534 PEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQ 593
E+DKVKL + GW+ERYYEEKF AK+ EE E+ R+DVVL+YTEGLCW+MHYYY GVCSW
Sbjct: 518 GEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWN 577
Query: 594 WFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPN 653
WFYPYHYAPFASDLK L++ +I FELG PFKPFNQLL V PSAS+HALPE YR LMT+P+
Sbjct: 578 WFYPYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPD 637
Query: 654 SPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMAD 713
SPI+DFYP DFE+DMNGKRYSWQGI+KLPF++E RLL+ ++E +LT EE RRNS + D
Sbjct: 638 SPIADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFD 697
Query: 714 MLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVF 773
MLFV+ SHPL I +L+ L +ER + E+++P LSDGMNGYI+ C GD P F
Sbjct: 698 MLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIASCGGDSQPSCF 757
Query: 774 RSPVASMEDIMGNQVLCAIYKLPDAHK--HVTRPPAGVIFPKKIVQLEDLKPAPVLWHED 831
S V MED++ NQV+CAIYKLP+ + +T + PKK + L DLK +LWHED
Sbjct: 758 CSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHED 817
Query: 832 SGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 865
+R + R+NP G+ISG +LG+A+HRLV ++
Sbjct: 818 GDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1
Length = 950
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/828 (47%), Positives = 513/828 (61%), Gaps = 61/828 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
ASK+ ++A E++R+R+E +G LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIRE-EFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR R K
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQK 419
Query: 421 REKAQARRGDDVEPLAQPDSLVPVSRFH-----GSRLASGPSPSPYQQSECVGRLDNGKG 475
++ + +R +P P ++ GS++AS P + Y+ R+ N
Sbjct: 420 EKRKRMKRD---QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSS 471
Query: 476 TSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPE 535
S P+ SF +D + L + R D+ + P
Sbjct: 472 PSISPN-------------------TSFTSDGS------PSPLGGIKRKAEDSDSEPEP- 505
Query: 536 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 595
ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ YYY+G SW+W+
Sbjct: 506 EDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVLRYYYQGCASWKWY 563
Query: 596 YPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNS 654
YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP +RKLM+DP+S
Sbjct: 564 YPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDS 623
Query: 655 PISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADM 714
I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE RRNS+ D+
Sbjct: 624 SIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDV 683
Query: 715 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP-VF 773
LFV HPL I L Q E VEV PEL G+ G S P +
Sbjct: 684 LFVGKHHPLHDFILEL----YQTGSTEPVEVP----PELCHGIQGKFSLDEEAILPDQIV 735
Query: 774 RSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 812
SPV + D+ N V+ +K P A ++ R PA V+ P
Sbjct: 736 CSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1
Length = 950
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/829 (47%), Positives = 513/829 (61%), Gaps = 63/829 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
ASK+ ++A E++R+R+E +G LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K + DE D + +
Sbjct: 241 LATHEPNFTIIRE-EFKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR R K
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQK 419
Query: 421 REKAQARRGDDVEPLAQPDSLVPVSRFH-----GSRLASGPSPSPYQQSECVGRLDNGKG 475
++ + +R +P P ++ GS++AS P + Y+ R+ N
Sbjct: 420 EKRKRMKRD---QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSS 471
Query: 476 TSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNP 534
S P+ S + IG +AE+S +S+
Sbjct: 472 PSISPNTSFTSDGSPSPIGGIKRKAEDS---------------------------DSEPE 504
Query: 535 EEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQW 594
ED V+L E GWK+RYY+ KF+A +E+ R+ VV Y EGLCWV+ YYY+G SW+W
Sbjct: 505 PEDNVRLWEAGWKQRYYKNKFDADAADEK--FRRKVVQSYVEGLCWVLRYYYQGCASWKW 562
Query: 595 FYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPN 653
+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP +RKLM+DP+
Sbjct: 563 YYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPD 622
Query: 654 SPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMAD 713
S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE RRNS+ D
Sbjct: 623 SSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGD 682
Query: 714 MLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP-V 772
+LFV HPL I L Q E V+V PEL G+ G S P +
Sbjct: 683 VLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PELCHGIQGKFSLDEEAILPDQI 734
Query: 773 FRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 812
SPV + D+ N V+ +K P A ++ R PA V+ P
Sbjct: 735 VCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1
Length = 951
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/828 (47%), Positives = 511/828 (61%), Gaps = 61/828 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
ASK+ ++A E++R+R+E +G LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIRE-EFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR R K
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQK 419
Query: 421 REKAQARRGDDVEPLAQPDSLVPVSRFH-----GSRLASGPSPSPYQQSECVGRLDNGKG 475
++ + +R +P P ++ G ++AS P + Y+ R+
Sbjct: 420 EKRKRMKRD---QPAFTPSGILTPHALGSRNSPGCQVASNPRQAAYEM-----RMQRNSS 471
Query: 476 TSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPE 535
S P+ SF +D + L + R D+ + P
Sbjct: 472 PSISPN-------------------TSFASDGS------PSPLGGIKRKAEDSDSEPEP- 505
Query: 536 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 595
ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ YYY+G SW+W+
Sbjct: 506 EDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVLRYYYQGCASWKWY 563
Query: 596 YPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNS 654
YP+HYAPFASD + + + FE G PFKP QL+GVFP+AS + LP +RKLM+DP+S
Sbjct: 564 YPFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDS 623
Query: 655 PISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADM 714
I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE RRNS+ D+
Sbjct: 624 SIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDV 683
Query: 715 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP-VF 773
LFV HPL I L Q E V+V PEL G+ G S P
Sbjct: 684 LFVGKLHPLRDFILEL----YQTGSTEPVDVP----PELCHGIQGTFSLDEEAILPDQTV 735
Query: 774 RSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 812
SPV + D+ N + +K P A +V R PA V+ P
Sbjct: 736 CSPVPMLRDLTQNTAVSINFKDPQFAEDYVFKAAMLPGARKPATVLKP 783
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1
Length = 949
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/908 (44%), Positives = 540/908 (59%), Gaps = 62/908 (6%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+ +GVK VDTSKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+PAP DE+ +F+YIDR+F +VRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
ASK+ ++A E++++RQE +G LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLN+DPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE HF+I+RE F P + C LC Q GH +C+G + K G+ D+ D + ++
Sbjct: 241 LATHEPHFTIIRE-EFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQ 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ F+ + LREYL+ E + + PF D E VDD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR R K
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQK 419
Query: 421 REKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRP 480
+K + +R S +P +F L + SP + N + T+
Sbjct: 420 EKKKRMKRDH--------PSFIPGGQFSPQALGNRSSPQ---------AISNPRQTA--- 459
Query: 481 HKVPRLSSGATIGAAIVEAENSFETDPQE--NKEEFKAKLKELLRDKSDAFNSDNPEEDK 538
+ + +NS + P N + + + + R D+ + P ED
Sbjct: 460 -----------FEMRMHDRQNSTMSSPNTSLNSDGSPSPARGIKRKSEDSDSEPEP-EDN 507
Query: 539 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 598
++L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ YYY+G SW W+YP+
Sbjct: 508 IRLWESGWKQRYYKNKFDVDASDEK--FRRKVVQSYVEGLCWVLRYYYQGCASWNWYYPF 565
Query: 599 HYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPIS 657
HYAPFASD + + FE G PFKP QL+GVFP+AS + LP +RKLMTDP S I
Sbjct: 566 HYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDPESSII 625
Query: 658 DFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 717
DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE RRNS+ D+LFV
Sbjct: 626 DFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFV 685
Query: 718 LLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHP-PVFRSP 776
HPL I +Q K K V + PEL G+ G ++P P SP
Sbjct: 686 GKHHPLCDFI------VEQYKSKNTEPVD--MPPELCYGIQGKLTPNENAVLPDKTVESP 737
Query: 777 VASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRP 836
V + D+ N + +K P + IF K V KP PVL D +
Sbjct: 738 VPMLRDLTQNSAVSISFKDPQFDED-------FIF-KATVLPGAKKPPPVLKPGDWEKTN 789
Query: 837 HENGRHNPH-GTISGRQ---LGEAAHRLVANSLQHMKVDRNGYGDRMHGSPLPYAAAPYV 892
++ P G R+ L ++A R + ++ M +R G + PL +PY
Sbjct: 790 NDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHA---MPRERGMPGMYANAVPLGAYGSPYT 846
Query: 893 PPVPSYQE 900
P+ S Q+
Sbjct: 847 RPLMSGQQ 854
>sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 /
CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1
PE=3 SV=3
Length = 1039
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/870 (43%), Positives = 519/870 (59%), Gaps = 71/870 (8%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVI-DGVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MG+PA +RWL+ KYP +++ V+EE+ +V+ DG +PVD ++PNPNG E+DNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVVEEKALVMEDGTVVPVDATQPNPNGEEFDNLYLDMNGIV 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAI-DGVAPRAKMNQQRSRR 118
HPC HPEDRPAP+ +E+ +F Y +R+ MVRPRKLL +A+ DGVAPRAKMNQQRSRR
Sbjct: 61 HPCSHPEDRPAPSDEEEMMVEVFKYTERVVNMVRPRKLLMIAVADGVAPRAKMNQQRSRR 120
Query: 119 FRASKDAADSAAEEERLRQEFERE----GRKLPPKSD-SQVFDSNVITPGTEFMAVLSIA 173
FRA++DA + ++++L + ++E ++ P ++ + FDSN ITPGT FM +L+ +
Sbjct: 121 FRAAQDAKEKEEDKQQLLKMLQKEKGSTAKEEPIETVVKKAFDSNSITPGTPFMDILAAS 180
Query: 174 LQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLD 233
L+Y+ +LN DP W K+KVI+SDA VPGEGEHKIM +VR QRN P +DPNTRH +YGLD
Sbjct: 181 LRYWCAYKLNTDPAWAKMKVIISDATVPGEGEHKIMEFVRSQRNSPEHDPNTRHVIYGLD 240
Query: 234 ADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKG 292
ADLIML LATHE HF +LRE V F G+ C LCGQ GH NC G+AK KAGEFDEK
Sbjct: 241 ADLIMLGLATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKEKAGEFDEK- 299
Query: 293 DEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMP 352
+ P KP+ +LH+ LREYL E IPN PF DLE +DD++FMCFFVGNDFLPH+P
Sbjct: 300 -DKAEPLKPFIWLHVSILREYLAIELNIPNLPFRWDLERAIDDWVFMCFFVGNDFLPHLP 358
Query: 353 TLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLH 412
LEIRE I LMA++K +GGY+T L R ++ + + ED IF++R
Sbjct: 359 ALEIRENGIETLMAIWKDNLPVMGGYVTKDGHVDLDRAQYILSGLAKQEDSIFRRRKETE 418
Query: 413 QRHAERIKREKAQARRGDDV-----EPLA-------QPDSLVPVSRFHGSRLASGPSPSP 460
R KR K ++G++ PL+ P++ P + +AS P P
Sbjct: 419 DRREAGFKRRKLNNQQGNNRGGAHDSPLSGRGGRKGAPEANGPPVGMNLFPVASIPKPV- 477
Query: 461 YQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETD-PQENKEEFKA--- 516
V R + ++ K + I + + + + E D P+E E K
Sbjct: 478 ITHDMVVNRANVANKSAASVLK-------SQIQSLVAQTQEKPEGDEPKEENPEAKTPPS 530
Query: 517 ---KLKELLRDKSDAFNSDNPEE--------------DKVKLGEPGWKERYYEEKFNAKT 559
K K L ++ A SD + D V+L E G+ +RYYE+KF K
Sbjct: 531 ALGKRKAELIEEGTATASDAASDTETPATTSSEEGPIDTVRLWEEGYADRYYEQKF--KV 588
Query: 560 PEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFEL 619
+ R V Y EGL WV+ YY++G SW+WFYPYHYAPFA+D DL + ISFE
Sbjct: 589 DAKDIAFRHKVARAYVEGLAWVLMYYFQGCPSWEWFYPYHYAPFAADFVDLGKMKISFEK 648
Query: 620 GHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIA 679
G +PF QL+ V P+AS HA+PE + LMT +SPI DFYP DFE+D+NGK+ SWQGIA
Sbjct: 649 GRISRPFEQLMSVLPAASRHAIPEVFHDLMTQEDSPILDFYPEDFEIDLNGKKMSWQGIA 708
Query: 680 KLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHP-----LSASIYTLDEHC 734
LPFI+ RLLD +K H L+ E+ RN+ D+L + SHP +S+ Y+ +
Sbjct: 709 LLPFIEMPRLLDAMKTKSHLLSAEDKARNAPGHDVLLISDSHPGLYEDISSHFYSKKQAV 768
Query: 735 KQLKIKERVEVKERLNPELSDGMNGYISPCAG-DPHPP-VFRSPVASMEDIMGNQVLCAI 792
+ K L+P+ SDG++G + G PH V+ +M D+ ++ +
Sbjct: 769 PEFK----------LDPKRSDGLSGKVRKIEGYVPHGSLVYPLERNTMPDVDYDRSMSVN 818
Query: 793 YKLP-DAHKHVTRPPAGVIFPKKIVQLEDL 821
Y +P +H H + G+ P + D+
Sbjct: 819 YDMPTSSHIHKSMLLRGLKMPTPALDRSDV 848
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2
PE=3 SV=2
Length = 976
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/858 (44%), Positives = 512/858 (59%), Gaps = 47/858 (5%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL +KYP V + E+ +DG ++PVD ++PNPN E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPEDRPAP DE+F +F+YIDR+F +VRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQV---FDSNVITPGTEFMAVLSIALQYY 177
ASK+ A+ AA E R+ EG +P K + FDSN ITPGT FMA L+ AL+YY
Sbjct: 121 ASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYY 180
Query: 178 IHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLI 237
IH R+ NDP W I++ILSDANVPGEGEHKIM Y+R QR P +DPNT HCL G DADLI
Sbjct: 181 IHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLI 240
Query: 238 MLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVV 297
ML +ATHE +F+I+RE F P Q C LCGQ GH C G A + GDE
Sbjct: 241 MLGIATHEANFNIIRE-EFVPNQPRACELCGQYGHELKECRG-----AENDTDLGDEYCK 294
Query: 298 P---KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTL 354
P +K + FL I LREYL+ E +PN PF+ +LE +DD++F+CFFVGNDFLPH+P+L
Sbjct: 295 PEQREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSL 354
Query: 355 EIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQR 414
EIREGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED IF++R + +R
Sbjct: 355 EIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDEER 414
Query: 415 HAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGK 474
E K +KA+ ++ P + S P +P S G
Sbjct: 415 FKENQKNKKARMQQYGRGRGGRGRGRGQPA--YVPSHGILAPMSAPMHHS---GESTRQM 469
Query: 475 GTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNP 534
+ R + ++ A + +++ E A+ + + +D
Sbjct: 470 ASDARQAAMQFNATNDANAQAAANLKALLNVKGEQSPAEVAAQESRKRKAEQPIIITDED 529
Query: 535 EE--DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSW 592
EE D ++L E GWKERYY KF+ + + + R V Y EGLCWV+ YYY+G SW
Sbjct: 530 EEPKDDIRLYESGWKERYYRAKFDVGSDD--VDFRHRVAWAYVEGLCWVLRYYYQGCSSW 587
Query: 593 QWFYPYHYAPFASDLKDLDQFNISFEL-GHPFKPFNQLLGVFPSASSHALPEHYRKLMTD 651
W++PYHYAPFASD + + +F F PF P QL+ VFP+AS LP ++KLMT+
Sbjct: 588 DWYFPYHYAPFASDFETVGEFKPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMTE 647
Query: 652 PNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIM 711
SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL+ +K + TLT+EE RN+
Sbjct: 648 DESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKYRNTRG 707
Query: 712 ADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYIS--PCAGDPH 769
+ +F+ +H + + + K + V+ L+P L +G++G IS A P
Sbjct: 708 PNRIFIGRNH----KSFAFFQQVAESKSNDLVD----LDPSLLNGVSGKISYDSTATAPG 759
Query: 770 PPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPA-PV 826
P F SPV+ E D+ N +C +Y+ P+ PA +FP V+L+ K A
Sbjct: 760 LP-FPSPVSHEECQDLPTNCGICVLYEDPEY-------PANYVFPA--VRLDGAKEAEKT 809
Query: 827 LWHEDSGRRPHENGRHNP 844
L ED R +GR NP
Sbjct: 810 LRPEDWNER--RDGRFNP 825
>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3
SV=3
Length = 1032
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/855 (42%), Positives = 514/855 (60%), Gaps = 68/855 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL++KYP +++ VIEE P ++G +IPVD + PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSKKYPKIISSVIEELPQEVNGEEIPVDITGPNPNGEEMDNLYLDMNGIVH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE +P P E+ +F Y DR+ MVRPRKLL +A+DGVAPRAKMNQQR+RRFR
Sbjct: 61 PCTHPEGKPPPANEQEMMIEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRK--------LPPKSDSQVFDSNVITPGTEFMAVLSI 172
++++ A E++ +QEF+R K L + + +DSNVITPGT FM +L+
Sbjct: 121 SAQE----AREQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGTPFMDILAA 176
Query: 173 ALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGL 232
+L+Y+I +LN DP WEK+K+I+SDA VPGEGEHKIM ++R QR P +DPN RH +YGL
Sbjct: 177 SLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRASPEHDPNARHVIYGL 236
Query: 233 DADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEK 291
DADLIML LATHE HF +LRE V F +Q C LCGQPGH A C G+AK K GEFDEK
Sbjct: 237 DADLIMLGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQAKEKNGEFDEK 296
Query: 292 GDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHM 351
G + KP+ +LH+ LREYL E +P+ PF DLE +DD++FMCFFVGNDFLPH+
Sbjct: 297 GKGATL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHL 354
Query: 352 PTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARL 411
P+L+IRE I+ L+A+++ +GGYLT + L++ + +Q + ED IF++R +
Sbjct: 355 PSLDIREDGIDTLIAIWRDNIPLMGGYLTQDGRVDLKKAQLILQGLAKQEDAIFRRRRQA 414
Query: 412 HQRHAERIKR----------EKAQARR--GDDVEPLAQPDSLVPVSRFHGSR-------L 452
+R KR E+A+ RR + + P P S + +
Sbjct: 415 EERKLANEKRRKQEEKARNEERARKRRRSSPSYDAIESPTHAKPRSAGAAAAPPAGLELI 474
Query: 453 ASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKE 512
Q E + +G R + + S+ A + + ++ ++ +D E+
Sbjct: 475 TPARGELARQTRELTHSMVVNRGNVYRANMANK-SAAAVLKSKLLGGQDGQPSDDGESTA 533
Query: 513 EFKAKLKE----LLRDKSDA-----FNSDNPEE-----------DKVKLGEPGWKERYYE 552
E A+L L + K+D ++ P++ D V+L E G+ +RYYE
Sbjct: 534 ESDAQLDAAGPVLGKRKADEAEVGQLGTETPDKPEPAKADELPPDTVRLWEEGYADRYYE 593
Query: 553 EKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQ 612
+KF P+++ E R V Y EGL WV+ YY++G SW W+YPYHYAPFA+D D+
Sbjct: 594 QKFGV-DPQDK-EFRHKVARAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGD 651
Query: 613 FNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKR 672
+SFE G PFKP+ QL+GV P++S+HA+P+ + LMT+P+S I DFYP DF VD+NGK+
Sbjct: 652 MELSFEKGTPFKPYEQLMGVLPASSNHAIPKVFHSLMTEPDSEIIDFYPEDFPVDLNGKK 711
Query: 673 YSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDE 732
++WQG+ LPFIDE RLL + K LTE+E RN++ D+L + SHPL + +
Sbjct: 712 FAWQGVVLLPFIDEKRLLAAMSKKYPLLTEDEKARNTVGRDVLLLSESHPLYQDLVS--- 768
Query: 733 HCKQLKIKERVEVKERLNPELSDGMNGYISPC-AGDPHPPVFRS----PVASMEDIMGNQ 787
K++ K +LN +SDG+ G + A PH + S + S+ED
Sbjct: 769 ---NFYSKKQGAPKYKLNMRVSDGLAGKVEKNEAYIPHSSLVSSLEEYGMPSLEDDRSIM 825
Query: 788 VLCAIYKLPDAHKHV 802
V I K + HK +
Sbjct: 826 VNYEIPKSTNIHKSM 840
>sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3
Length = 980
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/860 (43%), Positives = 518/860 (60%), Gaps = 57/860 (6%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVI-DGVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MG+PA +RWL+ +YP +++ VIE++P+V+ DG IPVDT++PNPNG E+DNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTRYPKIISPVIEDQPLVMEDGSTIPVDTTRPNPNGEEFDNLYLDMNGIV 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPEDRPAP +E+ +F Y DR+ MVRPRK+L +A+DGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPKDEEEMMMEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRF 120
Query: 120 RASKDAADSAAEEERLRQEFERE-GRKLPPKSDSQV----FDSNVITPGTEFMAVLSIAL 174
R++++A + +++ L + +++ G L +S V FDSN ITPGT FM +L+++L
Sbjct: 121 RSAQEAQEKEQDKQELIKMLKQQNGGNLSTESLETVTKKAFDSNSITPGTPFMDILALSL 180
Query: 175 QYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDA 234
+Y+ +LN DPGW K+K+I+SDA VPGEGEHKIM++VR QR P +DPNTRH +YGLDA
Sbjct: 181 RYWCQYKLNTDPGWAKLKIIISDATVPGEGEHKIMNFVRSQRASPDHDPNTRHVIYGLDA 240
Query: 235 DLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGD 293
DLIML LATHE HF +LRE VF Q+ + C +CGQ GH A NC G+ K+K GE DEK
Sbjct: 241 DLIMLGLATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKKDGEHDEKDK 300
Query: 294 EVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPT 353
V + KP+ +LH+ LREYL E +PN PF DLE VDD+IFMC FVGNDFLPH+P
Sbjct: 301 GVAL--KPFIWLHVAVLREYLAVELGVPNLPFRFDLERAVDDWIFMCCFVGNDFLPHLPA 358
Query: 354 LEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQ 413
LEIRE I+ L ++K +GGY+T L R + + + ED IF++R
Sbjct: 359 LEIREHGIDTLTKIWKDNLPVMGGYVTKDGHIDLERAQVILDGLAQQEDNIFKRRKEQED 418
Query: 414 RHAERIKREKAQ-------ARRGDDVEPLA-----QPDSLVPVSRFHGSRLASGPSPSPY 461
R KR K Q R+G P P++ +P+ A G +
Sbjct: 419 RREANFKRRKLQNEVNGRGGRQGGPSHPKKINGHENPENGLPLQ-------AVGAYTGRH 471
Query: 462 QQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEE------FK 515
+Q+ + N S P S A++ A ++++ S EN E+ K
Sbjct: 472 EQTLTHDMVVN---RSTAPDANVANKSAASVLKAQLQSQKSLSNPKPENPEQESPSALGK 528
Query: 516 AKLKELLRDKS---DAFNSDNPEE-------DKVKLGEPGWKERYYEEKFNAKTPEEREE 565
K + S DA + P D V+L E G+ +RYYE+KF+ K P++ E
Sbjct: 529 RKASSIEEGNSSVPDAASVSTPSTSAEEGPVDDVRLWEDGYADRYYEKKFH-KDPKDIE- 586
Query: 566 TRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKP 625
R V Y EGL WV+ YY++G SW+W+YPYHYAPFA+D KD+ + NISFE G KP
Sbjct: 587 FRHGVGRAYVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFKDIAKMNISFEKGRVSKP 646
Query: 626 FNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFID 685
F QL+ V P+AS HALPE + LM +P S I DFYP DFE+D+NGK+++WQG+A LPFI+
Sbjct: 647 FEQLMSVLPAASRHALPEVFHDLMLNPESNIIDFYPEDFEIDLNGKKFAWQGVALLPFIE 706
Query: 686 EARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEV 745
RLL V+ L+ ++ RN + D+L H S+Y DE + K++ +
Sbjct: 707 MPRLLAAVQSKYPELSAADSARNEMGRDVLIFSEGH---ESLY--DEVLTKFYSKKQGDS 761
Query: 746 KERLNPELSDGMNGYISPCAGDPHPPVFRSPVA--SMEDIMGNQVLCAIYKLPDAHK-HV 802
K +LNP+ SDG++G + G + P+ SM D+ ++ + Y P A + H
Sbjct: 762 KFKLNPKKSDGLSGRVEKKEGYVPHSELKYPLERNSMPDLDYDRSVSVYYDFPQASQTHK 821
Query: 803 TRPPAGVIFPKKIVQLEDLK 822
+ GV P + D++
Sbjct: 822 SMLLRGVQLPTPALTQNDIQ 841
>sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rat-1
PE=3 SV=3
Length = 1072
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/873 (42%), Positives = 501/873 (57%), Gaps = 67/873 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVI-DGVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MG+PA +RWL+ KYP +++ VIE++P+ + DG IPVD +KPNPNG E+DNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIV 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPEDRPAP +E+ +F Y DR+ MVRPRKLL +A+DGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF 120
Query: 120 RASKDAADSAAEEERLRQEFEREGRK-----LPPKSDSQVFDSNVITPGTEFMAVLSIAL 174
RA+++A + ++++ + +++ K + FDSN ITPGT FM +L+ +L
Sbjct: 121 RAAREAMEKEEDKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTPFMDILAASL 180
Query: 175 QYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDA 234
+Y+ +LN DP W IKVI+SDA VPGEGEHKIM +VR QR P +DPNTRH +YGLDA
Sbjct: 181 RYWCSYKLNTDPAWANIKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDA 240
Query: 235 DLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGD 293
DLIML LATHE HF +LRE VF + + C +CGQ GH A NC+G+AK K GEFDEK
Sbjct: 241 DLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEK-- 298
Query: 294 EVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPT 353
+ VVP KP+ +LH+ LREYL E +P PF+ +LE +DD++FMCFFVGNDFLPH+P
Sbjct: 299 DAVVPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLPA 358
Query: 354 LEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQ 413
LEIRE I+ L A++K +GGYLT L RV++ + + ED IF++R
Sbjct: 359 LEIRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYIMAGLAKQEDAIFRRRKETED 418
Query: 414 RHAERIKREK----AQARRGDDVEPLAQP--DSLVPVS-RFHGSRLASGPSPSPYQQSEC 466
R KR K A+ RR + Q +S P FH G +P P +
Sbjct: 419 RREAGFKRRKLADEARQRRAQGSRQIRQAAENSGPPAGFSFHKINEFPGKAPQPSITHDM 478
Query: 467 VGR---LDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEE---------- 513
V +D + V + + + EN E+ +
Sbjct: 479 VVNRQAVDQANVANKSAASVLKDQIKSMMAQGTSTPENGAESTETPAETAAAAPATEEQA 538
Query: 514 -----FKAKLKELLRDK-----------SDAFNSDNPEEDKVKLGEPGWKERYYEEKFNA 557
+ EL+ D ++ SD D V+L E G+ +RYYE+KF
Sbjct: 539 APPAALGKRKAELIEDAVAGPEASSTEVTEISESDAEPTDSVRLWEEGYADRYYEQKFKV 598
Query: 558 KTPEEREETRKDVVLR------YTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLD 611
RKD+ R Y EGL WV+ YY++G SW+WFYPYHYAPFA+D DL
Sbjct: 599 D--------RKDIDFRHKVGRAYAEGLAWVLEYYFQGCPSWEWFYPYHYAPFAADFVDLG 650
Query: 612 QFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGK 671
+ I FE G +PF QL+ V P+AS HA+PE + LM + S I FYP DFE+D+NGK
Sbjct: 651 KMEIKFEKGRISRPFEQLMSVLPAASRHAIPEVFHSLMLEETSEIRHFYPDDFEIDLNGK 710
Query: 672 RYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLD 731
+ +WQG+A LPFID RLL ++ H L+ E+ RN+ D L + SHP ++Y D
Sbjct: 711 KMAWQGVALLPFIDMPRLLAAMETKSHLLSPEDHLRNAPGKDYLLLSDSHP---TLY--D 765
Query: 732 EHCKQLKIKERVEVKERLNPELSDGMNGYISPCAG-DPHPP-VFRSPVASMEDIMGNQVL 789
Q K++ K L+P S G++G + G PH V+ SM D+ ++ L
Sbjct: 766 HITSQFYSKKQGTTKFELDPTKSAGLSGLVEKIDGYVPHGSLVYPLSRNSMPDVDYDRSL 825
Query: 790 CAIYKLPD-AHKHVTRPPAGVIFPKKIVQLEDL 821
Y PD +H H + GV P + D+
Sbjct: 826 MVHYFFPDCSHTHKSMLLRGVQMPTPALTRSDI 858
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3
SV=4
Length = 1058
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/878 (42%), Positives = 515/878 (58%), Gaps = 81/878 (9%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL+ KYP +++ VIEE P ++G +IPVD +KPNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEELPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE +P P E+ +F Y DR+ MVRPRKLL +A+DGVAPRAKMNQQR+RRFR
Sbjct: 61 PCTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFR 120
Query: 121 ASKDAADSAAEEERLRQEFERE-GRKLPPKSDSQV----FDSNVITPGTEFMAVLSIALQ 175
++++A ++ ++E R+ ++ G K+ + +V +DSNVITPGT FM +L+ +L+
Sbjct: 121 SAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAASLR 180
Query: 176 YYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDAD 235
Y+I +LN DP WEK+K+I+SDA VPGEGEHKIM ++R QR P +DPNTRH +YGLDAD
Sbjct: 181 YWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDAD 240
Query: 236 LIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDE 294
LIML LATHE HF +LRE V F + C LCGQ GH A C G+AK K GEFDEK
Sbjct: 241 LIMLGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEKNGEFDEKQKG 300
Query: 295 VVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTL 354
+ KP+ +LH+ LREYL E +P+ PF DLE +DD++FMCFFVGNDFLPH+P+L
Sbjct: 301 SSL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSL 358
Query: 355 EIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQR 414
+IRE I+ L+A+++ +GGYLT+ L+R + +Q + ED IF++R + +R
Sbjct: 359 DIRENGIDTLIAIWRDNIPVMGGYLTEDGHVDLKRAQLILQGLAKQEDAIFRRRRQAEER 418
Query: 415 HAERIKREKAQA------------------------------RRGDDVEPLAQPDSLVPV 444
KR K +A R G D P Q + + P
Sbjct: 419 KLANEKRRKQEAKAREEERARKRRRSSPTYEPMDSPVGHRAPRGGGDAAPPNQLELITP- 477
Query: 445 SRFHGSRLASGPSPSPYQQSECVGR--LDNGKGTSGRPHKVPRLSSGATIGAAIVEAENS 502
SR SR + S V R + N + K+ + S G E +
Sbjct: 478 SRGELSRQTRELTHSMVVNRGAVYRANMANKSAAAVLKSKLMQGSQNGQNGEEKSEGATT 537
Query: 503 FETDPQENKEE--------FKAKLKELLRDKSD---------------AFNSDNPEEDKV 539
+P +++ + K K L ++ D A D D V
Sbjct: 538 NNDEPSQDQPDQTEQTSPSVLGKRKADLVEEEDTDAGTPGRDSPAVPVAAKEDELPPDTV 597
Query: 540 KLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYH 599
+L E G+ +RYYE+KF P+++ E R V Y EGL WV+ YY++G SW W+YPYH
Sbjct: 598 RLWEEGYADRYYEQKFGV-DPQDK-EFRHKVARAYAEGLAWVLLYYFQGCPSWTWYYPYH 655
Query: 600 YAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDF 659
YAPFA+D D+ I+F+ G PFKPF QL+GV P++S+HA+P+ + LM+ P+S I DF
Sbjct: 656 YAPFAADFVDIGDMEITFDKGVPFKPFEQLMGVLPASSNHAIPKVFHDLMSSPDSEIIDF 715
Query: 660 YPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLL 719
YP DF VD+NGK+++WQG+ LPFIDE RLL ++K LTE+E RNS+ ++L +
Sbjct: 716 YPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLTEDEKLRNSVGREVLLISE 775
Query: 720 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPC-AGDPHPPVFRS--- 775
+HPL + K++ K +LN +SDG+ G + A PH + S
Sbjct: 776 AHPLYQDL------VANFYSKKQGVQKYKLNMRISDGLAGKVERNEAYIPHSSLPSSLEE 829
Query: 776 -PVASMEDIMGNQVLCAIYKLPDA-HKHVTRPPAGVIF 811
+ S+ED ++ L Y++P + H H + GV F
Sbjct: 830 YGMPSLED---DRSLTVNYEIPKSNHVHKSMLLRGVKF 864
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2
PE=3 SV=2
Length = 975
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/884 (43%), Positives = 519/884 (58%), Gaps = 62/884 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL +KYP V + E+ DG ++PVD ++PNPN E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPEDRPAP DE+F +F+YIDR++ +VRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQV-FDSNVITPGTEFMAVLSIALQYYIH 179
ASK+ A+ A E R EG +PPK + FDSN ITPGT FMA L+ AL+YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
R+ ND W I++ILSDANVPGEGEHKIM YVR QR P +DPNT HCL G DADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP- 298
+ATHE +F+I+RE F P Q C LCGQ GH C G A + GD+ P
Sbjct: 241 GIATHEANFNIIRE-EFVPNQPRACDLCGQYGHELKECRG-----AENETDLGDDYCKPE 294
Query: 299 --KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEI 356
+K + FL I LREYL+ E +PN PF+ D+E +DD++F+CFFVGNDFLPH+P+LEI
Sbjct: 295 QREKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEI 354
Query: 357 REGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHA 416
REGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED IF++R + +R
Sbjct: 355 REGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQ 414
Query: 417 ERIKREKAQAR--------RGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVG 468
E + +KA+ + Q + VP HG LA +P +
Sbjct: 415 ENQRNKKARMQMYGGGGRGGRGRGRGRGQQPAFVPT---HGI-LAPMAAPMHHSGESTRQ 470
Query: 469 RLDNGKGTSGRPHKVPRLSSGATIGAAI-VEAENSFETDPQENKEEFKAKLKELLRDKSD 527
+ T+ + ++ A + A + V+ E S P + + + L++ + +
Sbjct: 471 MASEARQTAMKFTNDANETAAANLKALLNVKGEES----PADIASRKRKAEQPLIKPEEE 526
Query: 528 AFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYE 587
D +D ++L E GWK+RYY KF+ + + E R V Y EGLCWV+ YYY+
Sbjct: 527 ---EDEGPKDDIRLYESGWKDRYYRAKFDVGSDD--IEFRHRVAWAYVEGLCWVLRYYYQ 581
Query: 588 GVCSWQWFYPYHYAPFASDLKDLDQFNISFEL-GHPFKPFNQLLGVFPSASSHALPEHYR 646
G SW W++PYHYAPFASD + + +F F PF P QL+ VFP+AS LP ++
Sbjct: 582 GCASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQ 641
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
KLM +SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL ++ + TLT EE +
Sbjct: 642 KLMIQDDSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 701
Query: 707 RNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYIS--PC 764
RN+ + +F+ +H + + + K + V L+P L +G++G I+
Sbjct: 702 RNTRGPNRIFIGRNH----KSFEFFQQVAESKSDDLVP----LDPTLLNGVSGKIAYDST 753
Query: 765 AGDPHPPVFRSPVA--SMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLK 822
A P P F SPV +D+ N +C +Y+ P+ P IFP ++L+ K
Sbjct: 754 ATAPGLP-FVSPVNHDECQDLPTNCGICVLYEDPEY-------PQDYIFPA--LRLDGAK 803
Query: 823 -PAPVLWHEDSGRRPHENGRHNPHGTISGR----QLGEAAHRLV 861
P L +D R +GR+ P + L ++ HR V
Sbjct: 804 EPEKTLKPDDWNDR--RDGRYQPQVGFNRNAPRGSLDQSGHRQV 845
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1
PE=1 SV=2
Length = 908
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 376/874 (43%), Positives = 499/874 (57%), Gaps = 85/874 (9%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVID-GVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MGVPAF+RWL+ KYP V+ + E + V D G I D + PNPNG+E+DNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPED+PAP DE+ +F+ IDRLF +VRPRKLLYMAIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKDAADSAAEEERLRQEFEREGRKLPP-KSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
RA+K+ + E R+R+E G KLPP K + FDSN ITPGT FM LS L Y++
Sbjct: 121 RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV 180
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
H R NN+P W+ IKVILSDANVPGEGEHKIM Y+R QR P +DPNT+H L G DADLIM
Sbjct: 181 HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM 240
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L LATHE +F+I+RE F P + C +C GH C G + K D +
Sbjct: 241 LGLATHEPNFTIIREE-FLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGA 299
Query: 299 KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIRE 358
+ + F+ + LREYL +PN PFE E +DD++FMCFFVGNDFLPH+P+LEIRE
Sbjct: 300 EVKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIRE 359
Query: 359 GAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAER 418
GA++ L+ +YKK GYLTD +L RV+ + +G+ ED+IF+ R R ++ R
Sbjct: 360 GAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKAR 419
Query: 419 IKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSG 478
K K Q R D L Q S F S A GP+ Q VG N K +
Sbjct: 420 DKARKRQ-ERNQDHGSLNQ-------SAFGAS--AVGPN----SQQRSVG---NYKEEAA 462
Query: 479 RPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPEEDK 538
R S A + E N +
Sbjct: 463 ALRNRKRTSDMANLDDEDEEENND-----------------------------------E 487
Query: 539 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 598
V+L E G+K+RYYE KF+ + + R V L+Y GLCWV+ YYY+G SW W++PY
Sbjct: 488 VRLWEDGFKDRYYESKFDVAPGNQ--QFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPY 545
Query: 599 HYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPIS 657
HYAPFASD ++ + FE G PF P QL+GVFP+ASS +PE + KLM+DP SPI
Sbjct: 546 HYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESPII 605
Query: 658 DFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 717
DFYP DF++D+NGK+++WQG+A LPF+DE RL + LT EE +RN + L++
Sbjct: 606 DFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYI 665
Query: 718 LLSHPLSASIYTLDEHCKQL-KIKERVEVKERLNPELS-DGMNGYISPCAGDPHPP-VFR 774
P H K++ KI E+ + E + +S DGM G + + V +
Sbjct: 666 SNQSP----------HYKKVKKISEKDD--ESVCKAISFDGMRGTLGKTELNTAISGVLK 713
Query: 775 SPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLED-LKPAPVLWHEDSG 833
SP++ + DI N + ++ P+ + IF K +LE+ + P VL +E SG
Sbjct: 714 SPISGLSDINDNITVTTTFRDPEYDED-------YIFEAK--RLENAVDPPQVLPNEQSG 764
Query: 834 RRPHENGRHNPHGTISGRQLGEAAHRLVANSLQH 867
+ N H T + + ++ HR++ +++
Sbjct: 765 NKHRPVIGFNSHLTRA--YVPDSGHRMLNAGIRN 796
>sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAT1 PE=3 SV=3
Length = 968
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 327/744 (43%), Positives = 450/744 (60%), Gaps = 51/744 (6%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL+ KYP +++ V+EEE I G K PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKY----ENPNPNG-EIDNLYLDMNGIVH 55
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE + P T DE+F +F Y DR+ +M RPRK+L +A+DGVAPRAKMNQQR+RRFR
Sbjct: 56 PCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFR 115
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMAVLSIALQYYIH 179
A+KDA A + E QE E G + + +DSN ITPGT FM L+ AL+Y++
Sbjct: 116 AAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQWDSNAITPGTPFMDRLAEALRYWVA 175
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
+L++DPGW ++VI+SDA VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI L
Sbjct: 176 YKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIFL 235
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP- 298
LATHE HF +LRE VF QDK F K + + + GD V
Sbjct: 236 GLATHEPHFRVLREDVF--ASQDKKFTI--------------KDQIADANSNGDTVAKED 279
Query: 299 KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIRE 358
KKP+ +LH+ LREYL E P F +LE +DD++F+CFF GNDFLPH+P+L++R+
Sbjct: 280 KKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRD 339
Query: 359 GAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAER 418
I+ L+ +K+ L Y+T K +L+ VE + + E IF+ + QR E
Sbjct: 340 NGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREEN 399
Query: 419 IKREK--------------AQARRGDDVEPLAQPDSLVPVSRFHGSRLA--SGPSPSPYQ 462
KR K +Q +G D PL D +P+ G + + + S
Sbjct: 400 NKRRKLAQEQERALKRVYSSQVSKGKDKAPLT-ADVNMPLMDTSGQNVEGYANLTNSDIV 458
Query: 463 QSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELL 522
Q+ + N S ++ +L +V+ + + ++ +++L+E+
Sbjct: 459 QNRAILTKAN-LANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSESELEEIQ 517
Query: 523 RDKSDAFNSDNPEEDK------VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTE 576
D S + PEEDK +KL EPG+ +RYYE KF+ ++ EE E+T++DVV Y E
Sbjct: 518 SDNSLKRKLE-PEEDKQTQSDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRHYVE 576
Query: 577 GLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF---NISFELGHPFKPFNQLLGVF 633
G+ WV YYY+G SW W++PYHYAPFA+D +L++ + F+LG PF+PF QL+ V
Sbjct: 577 GIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVL 636
Query: 634 PSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEV 693
P+AS H LP+ +R LM++P+S I DFYP +FE+DMNGK+ SWQGI LPFIDE RLLD V
Sbjct: 637 PAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAV 696
Query: 694 KKIEHTLTEEEARRNSIMADMLFV 717
+K LT +E RN+ LF+
Sbjct: 697 QKKYELLTPDEKSRNTNKEAELFI 720
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 608 bits (1569), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/437 (67%), Positives = 354/437 (81%), Gaps = 10/437 (2%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVK---IPVDTSKPNPNGLEYDNLYLDMNG 57
MGVPAFYRWLA++YP ++DV+EEEP DG + IPVD ++PNPNG E+DNLYLDMNG
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPT--DGGRGDLIPVDITRPNPNGFEFDNLYLDMNG 58
Query: 58 IIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSR 117
IIHPCFHPE +PAP T+D+VF+ MF+YID LF +VRPRK+LY+AIDGVAPRAKMNQQRSR
Sbjct: 59 IIHPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSR 118
Query: 118 RFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYY 177
RFRA+KDAA++ AEEERLR++FE EG+ L K ++ DSNVITPGT FMA+LS+ALQYY
Sbjct: 119 RFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYY 178
Query: 178 IHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLI 237
I RLN++PGW +KVILSD+NVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLI
Sbjct: 179 IQSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
Query: 238 MLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVV 297
ML+LATHEVHFSILREV+ PGQQ+KCF+CGQ GH A++C GK+ D + +
Sbjct: 239 MLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAAD-----IPI 293
Query: 298 PKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
KK YQFL+IW LREYL YE IP+PPF I+ E I+DDF+F+CFFVGNDFLPHMPTLEIR
Sbjct: 294 HKKKYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIR 353
Query: 358 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAE 417
EGAINLLM VY+KEF A+GGYLTD + L RVEHFIQAV ED+IFQKR R+ Q
Sbjct: 354 EGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDN 413
Query: 418 RIKREKAQARRGDDVEP 434
+ ++ R +V P
Sbjct: 414 NEEMKQRSRRDPSEVPP 430
Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 210/465 (45%), Positives = 268/465 (57%), Gaps = 45/465 (9%)
Query: 509 ENKEEFKAKLKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRK 568
+N EE K + + RD S+ P +DK+KLGEPG+KERYY EKF+ PEE E+ ++
Sbjct: 412 DNNEEMKQRSR---RDPSEV--PPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQ 466
Query: 569 DVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQ 628
D+VL+Y EGLCWV YYY+GVCSWQWFYPYHYAPFASDLK+L I+F +G PFKPF+Q
Sbjct: 467 DMVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQ 526
Query: 629 LLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEAR 688
L+G P+ASS+ALP YRKLMTDP+SPI FYP DFE+DMNGKR++WQGIAKLPFI+E
Sbjct: 527 LMGTLPAASSNALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKL 586
Query: 689 LLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKER 748
LL +K+E TLT EE +RNS+M D+L+V +HPL I + + E +
Sbjct: 587 LLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWM-- 644
Query: 749 LNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAG 808
++P S GMNG++ + SPV + I N+ L Y P H H++ PP G
Sbjct: 645 IDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRG 704
Query: 809 VIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQH 867
I P KI+ D+KP P LWHED S RR R G I+G LGEAAHRL+ N+L +
Sbjct: 705 AIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-N 763
Query: 868 MK---------VDRNGYGDRMHGSPLPYAAAPYVPPVPSYQEYGVYDQGYNRFSQPRTDS 918
MK +D NGY VP YG G NR P
Sbjct: 764 MKSSTGAASGLIDPNGYYRN----------------VPGNYSYG----GVNRPRAPGPSP 803
Query: 919 YPAGHSQSSI-------SAAQPPYDGGYSQHYASNTSHHPNRRYH 956
Y + S ++ Q ++ G Y SN S NR Y+
Sbjct: 804 YRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGSQDYNRNYN 848
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 364/891 (40%), Positives = 507/891 (56%), Gaps = 94/891 (10%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVI-DGVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MGVPA +R L+ K+ V+ VIE + DG +I D S PNPNG+E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPEDRPAP T DE+ +F+Y DR+ MVRPR+LL++AIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKDAADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMAVLSIALQYYI 178
R+S++AA E + +E +++G + + + +DSN ITPGT FM L+ +L+YYI
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+LN+DP W ++ ILSDA+VPGEGEHKIM ++R QR P YDPNT H +YGLDADLIM
Sbjct: 181 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 240
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L LATHE HF +LRE VF Q G E + K D+ + VP
Sbjct: 241 LGLATHEPHFRVLREDVFF-----------QQGSTKKTKEERLGIK--RLDDVSETNKVP 287
Query: 299 -KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
KKP+ +L++ LREYL+ E +PN PF DLE +DD++F FFVGNDFLPH+P+L+IR
Sbjct: 288 VKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIR 347
Query: 358 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR------- 410
+GA+ L +++ +GGYLT +L R E + AVG+ ED IF++ +
Sbjct: 348 DGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNE 407
Query: 411 ---------------------LHQRHAERIKREKAQARRGDDVEP-----LAQPDSLVPV 444
+ QR E E + + V+ + D+ PV
Sbjct: 408 NYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPV 467
Query: 445 SRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLS--SGATIGAAIVEAE-- 500
+ S S S + R N G S V ++ + + + A +V E
Sbjct: 468 DLVNLSEKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETL 527
Query: 501 ------------NSFE-TDPQENKEE----FKAKLKEL-LRDKSDAFNSDNPEEDKVKLG 542
+++E TD E+ K+ + + K+ +N D V+L
Sbjct: 528 QNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLY 587
Query: 543 EPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 602
EPG++ERYYE+KF+ +P+E E+ R + V Y GLCWV+ YYY+G SW W+YPYHYAP
Sbjct: 588 EPGYRERYYEQKFHI-SPDEPEKIR-EAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAP 645
Query: 603 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 662
FA+D KDL ++ FEL PFKP+ QLLGV P+AS + LPE + LMTD NS I DFYP
Sbjct: 646 FAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPE 705
Query: 663 DFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHP 722
+F +D+NGK++ WQG+A LPFIDE RLL+ V KI LTEEE++RN + +LF+ HP
Sbjct: 706 NFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHP 765
Query: 723 LSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISP-----------CAGDPHPP 771
+ E KQL K+R +L+ +++ G+ G ++ C D
Sbjct: 766 M------FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDSVIPNVSVQCPIDVTSA 819
Query: 772 VFRSPVASMEDIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKIVQLEDL 821
S++D NQ + ++++P +H H + GV P +++ ED+
Sbjct: 820 DALQKYGSIDD---NQSISLVFEVPKSHFVHKSMLLRGVKMPNRVLTPEDI 867
>sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1
PE=3 SV=4
Length = 1003
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 326/771 (42%), Positives = 455/771 (59%), Gaps = 56/771 (7%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL+ KYP +++ V+E++ G S PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEDDVTQEIGA---AQFSDPNPNG-ELDNLYLDMNGIVH 56
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE + P T DE+F +F Y DR+ +M RPRK+L +A+DGVAPRAKMNQQRSRRFR
Sbjct: 57 PCSHPEHKLPPETEDEMFLDVFKYTDRVLLMARPRKVLMIAVDGVAPRAKMNQQRSRRFR 116
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMAVLSIALQYYIH 179
+++DA + E+ER +E E G + + +DSN ITPGT FM L+ AL+Y++
Sbjct: 117 SAQDAKIAHEEKERQIRERESRGESIDDAIKGKKSWDSNAITPGTPFMDSLAQALRYWVA 176
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
+L DPGW ++VI+SDA VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI L
Sbjct: 177 YKLATDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLIFL 236
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
LATHE HF +LRE VF Q + + Q + A++ A K
Sbjct: 237 GLATHEPHFRVLREDVFA-NQSRQMRISDQLSMTQDQKDSIAEQDA-------------K 282
Query: 300 KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
KP+ +LH+ LREYL+ E P+ F DLE +DD++FMCFFVGNDFLPH+P+L++R+
Sbjct: 283 KPFLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRDN 342
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERI 419
I++L+ +K+ L Y+T +L VE + ++ ED IF+KR +R E
Sbjct: 343 GIDILVNCWKRMLPKLRDYITCDGNLNLESVEKLLSSLSYKEDEIFRKRHEGEKRREEND 402
Query: 420 KREKA--------------QARRGDDVEPLAQPDSLVPVSRFHGSRL---ASGPSPSPYQ 462
KR K Q +G D PL D +P+ G + A + +
Sbjct: 403 KRRKLAQEEEKALKNQYIPQVSKGSDKAPLT-ADINMPLLSTSGDAVEGYAQLSNKDIVE 461
Query: 463 QSECVGRLDNGKGTSGRPHKVPRLS-------SGATIGAAIVEAENSFETDPQENKEEFK 515
+ + + + + K S + AAI E +N + + EN ++
Sbjct: 462 NRDVITKANMSNADAAAALKKLLDSKNNKESDKNVSASAAIQEQQNKSDINTTENSKKRP 521
Query: 516 AKLKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYT 575
E K D D V++ EPG+++RYY+ KF + EE + R+D+V Y
Sbjct: 522 IDQVEAELPKPDE------NGDSVRMWEPGYRQRYYQSKFGVVSEEEINKIRRDMVRCYL 575
Query: 576 EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF----NISFELGHPFKPFNQLLG 631
EG+ WV+ YYY+G SWQW+YPYHYAPFA+D +++ I F LG PFKP+ QL+
Sbjct: 576 EGISWVLLYYYQGCPSWQWYYPYHYAPFAADFVNINDIIGEQGIKFTLGEPFKPYEQLMS 635
Query: 632 VFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLD 691
V P+AS H LPE R LM+DP+S I DFYP +F++DMNGK+ SWQGIA LPFIDE RLL+
Sbjct: 636 VLPAASGHNLPEVLRILMSDPSSEILDFYPEEFQIDMNGKKMSWQGIALLPFIDENRLLE 695
Query: 692 EVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYT--LDEHCKQLKIK 740
++K H LT++E RN++ ++LF+ + Y D + K+LK +
Sbjct: 696 ALEKRYHLLTDDERERNTLKNEVLFISNQNKNYKRFYNELYDNNVKELKFR 746
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 317/780 (40%), Positives = 446/780 (57%), Gaps = 78/780 (10%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP +++ V+EE PV+ DGV++P+D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEYPVIEDGVQLPLDYSSANPNG-ELDNLYLDMNGIVH 59
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE++P P T DE+ +F+Y +R+ M RPRK+L +A+DGVAPRAKMNQQR+RRFR
Sbjct: 60 PCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRFR 119
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQ-VFDSNVITPGTEFMAVLSIALQYYIH 179
+++DA E++ +E E G + S+ +DSN ITPGT FM L+ AL+Y+
Sbjct: 120 SARDAKLQNEAREQVLREREDYGETIDENVKSKKTWDSNAITPGTPFMDKLATALRYWTS 179
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
+L DPGW+ +++I+SDA VPGEGEHKIM+++R QR Y+PNT HC+YGLDADLI L
Sbjct: 180 FKLATDPGWKNLQIIISDATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADLIFL 239
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
LATHE HF ILRE VF K +P + N + K++ + D +
Sbjct: 240 GLATHEPHFKILREDVFANNNYKK----PKPQDMI-NLSEEEKQQLIQQDSE-------- 286
Query: 300 KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
KP+ +LHI LREYL E IP+ F+ D E +DD++FMCFF GNDFLPH+P L++RE
Sbjct: 287 KPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLPHLPCLDVREN 346
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKR----ARLHQRH 415
+I++L+ ++K YLT +L VE ++ +G E +F+K+ R + H
Sbjct: 347 SIDILVDIWKTVLPKTKTYLTCDGTLNLEPVEALLEQLGDRETDLFKKKYIQEVRKQEAH 406
Query: 416 AERIK-REKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSEC---VGRLD 471
R K + +G P +PV G+ + S + + +
Sbjct: 407 DRRKKLKSNPNVSQGKVDRNFMIPLENMPVYDVDGNAAEGSLNLSNKDFANMRKEINLAN 466
Query: 472 NGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDP-----------------------Q 508
G G + + K+ + + + E +NS + +
Sbjct: 467 EGDGEAAKALKLKSEKNSGVVEFSSEELKNSVQLSKTANYDAATSLQEKLIAKKMAMRDE 526
Query: 509 ENKEEFKAKLKELLRDKSDAFNSDNP-------------------------------EED 537
EN EE K K D ++ S+ P ++
Sbjct: 527 ENAEELSLKRKSEDVDSAEKETSNEPEDDEADYDEDEGSTVPPAVIHTGIVKSGFIDTDE 586
Query: 538 KVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYP 597
V+L EPG+ +RYY+ KF+ ++ +KDV+ Y EG+ WV+ YYY+G SW W+YP
Sbjct: 587 SVRLYEPGYHDRYYQHKFHVPA-KDIPALQKDVIRCYVEGISWVLLYYYQGCASWTWYYP 645
Query: 598 YHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPIS 657
YHYAPFA D K++ +I F+LG PF P+ QL+ V P+AS HALPE +R LM+DPNS I
Sbjct: 646 YHYAPFAQDFKNIKNLDIHFDLGEPFLPYEQLMSVLPAASGHALPEIFRPLMSDPNSEII 705
Query: 658 DFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 717
DFYP +F VDMNGK+ +WQGIA LPFIDE RLL V++ L++ E RN D L +
Sbjct: 706 DFYPEEFPVDMNGKKMAWQGIALLPFIDETRLLKTVREQYSKLSDSEKARNVRKKDALLI 765
>sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAT1 PE=3 SV=3
Length = 1010
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 313/811 (38%), Positives = 446/811 (54%), Gaps = 102/811 (12%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIP-VDTSKPNPNGLEYDNLYLDMNGII 59
MGVP YR L++K P +V+DVIE+E ++DG +IP D S PNPNG E DNLYLDMNGI+
Sbjct: 1 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIPGSDYSAPNPNG-ELDNLYLDMNGIV 59
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPE AP + DE+ +F Y +R+ + RPRK+L MAIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEGEEAPPSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQRARRF 119
Query: 120 RASKDAA---DSAAEEERLRQEFEREGRKLPPKSDSQV--------------FDSNVITP 162
R++KDAA +S E E + E + KS + +DSN ITP
Sbjct: 120 RSAKDAAIEAESTLESELKAKTIELQSSGEKGKSLETILDEFKQGLVNKPGKWDSNAITP 179
Query: 163 GTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYD 222
GT FM L+ AL+Y++ +LN +PGW +KV++SDA VPGEGEHKIM ++R QR P Y+
Sbjct: 180 GTPFMEKLAAALRYWVGYKLNTEPGWRDLKVVISDATVPGEGEHKIMEFIRSQRGDPTYN 239
Query: 223 PNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAK 282
NT HC+YGLDADLI L LATHE F +LRE VF +Q+K GH
Sbjct: 240 ANTSHCIYGLDADLIFLGLATHEPKFKLLREDVF---RQNKT-----AGH---------- 281
Query: 283 RKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLECIVDDFIFMC 340
KKP+ +L+I LREYL + R +P +I DLE +DD++F+C
Sbjct: 282 ---------------QKKPFIWLNIDILREYLREDLRFTHPQTKIPFDLERAIDDWVFLC 326
Query: 341 FFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSY 400
FFVGNDFLPH+P ++R+G+IN+L+ +K Y+T +L + + ++ +
Sbjct: 327 FFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYITCDGHVNLAQAQDLLKNFATQ 386
Query: 401 EDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSP 460
E RI +HQ +R++ EK+QA + + L R G + A P
Sbjct: 387 EQRIL-----VHQEQ-DRVEYEKSQANKAAKQQAHRDSKKL----RQQGEQAALESMPLY 436
Query: 461 YQQSECVGRLD-NGKGTSGRPHKVP---------------RLSSGATIGAAIVEAENSFE 504
+ E VG + + G+ + + L G+ GA E
Sbjct: 437 DTKGESVGDVQLTNRELVGQRNDITLANLANQDAADKLRFMLKRGSDTGAEEPAKRAKIE 496
Query: 505 TDPQENKEEFKAKLKELLRDKSDAFNSD--NPE---------EDKVKLGEPGWKERYYEE 553
+P+E E ++ + S A ++D NP D V+ + G+ ERYY
Sbjct: 497 EEPKE-AESNSSEATPPTANPSIANDADLSNPNVTVHETTGYADHVQFHKSGYTERYYMN 555
Query: 554 KFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF 613
KF+AK +E + R+ V Y +G+CWV+ YYY G SW WFYPYHYAP A D +
Sbjct: 556 KFHAKE-DEVDNLRRQVAEEYMKGVCWVLMYYYHGCQSWSWFYPYHYAPLAGDFDQISNM 614
Query: 614 NISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRY 673
+ F PF+P+ QL+ V P+AS H LP +R LM++ NSPI D+YP +F++D+NGK+
Sbjct: 615 KVEFGESAPFRPYEQLMSVLPAASGHNLPAVFRPLMSEENSPIIDYYPENFQLDLNGKKQ 674
Query: 674 SWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEH 733
W+ + LPFI+ LL+ V+ LT EE RN++ + +++ H L TL+
Sbjct: 675 EWKAVVLLPFINADHLLEHVQAKYTELTPEEKDRNTLREE---IVIFHRLGKYAKTLE-- 729
Query: 734 CKQLKIKERVEVKER---LNPELSDGMNGYI 761
K+ +++ V V ++ LN + G+ G +
Sbjct: 730 -KRGLMEKGVIVSKKPLVLNSHETSGLAGTV 759
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=rat1 PE=3 SV=3
Length = 1035
Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/429 (51%), Positives = 307/429 (71%), Gaps = 6/429 (1%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL+ KYP +++ VIEE+P ++G +IPVDT++PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEQIPVDTTRPNPNGEELDNLYLDMNGIVH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE +P P E+ +F+Y DR+ MVRPRKLL +A+DGVAPRAKMNQQR+RRFR
Sbjct: 61 PCTHPEGKPPPANEQEMMLEIFNYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFR 120
Query: 121 ASKDAADSAAEEERLRQEFEREGR---KLPPKSDSQVFDSNVITPGTEFMAVLSIALQYY 177
++++A ++ ++E R++F ++ + ++ + + +DSNVITPGT FM +L+ +L+Y+
Sbjct: 121 SAQEAKEADEKKEEFRKQFLKKSKGDQEIHEEVIQKTWDSNVITPGTPFMDILAASLRYW 180
Query: 178 IHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLI 237
I +LN DP WEK+K+I+SDA VPGEGEHKIM +VR QR P +DPNTRH +YGLDADLI
Sbjct: 181 IAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFVRSQRAAPEHDPNTRHVIYGLDADLI 240
Query: 238 MLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVV 296
ML LATHE HF +LRE V F + C LCGQ GH A C G+AK K G+FDEKG
Sbjct: 241 MLGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNGQFDEKGKGTS 300
Query: 297 VPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEI 356
+ KP+ +L++ LREYL E +P+ PF DLE +DD++FMCFFVGNDFLPH+P+L+I
Sbjct: 301 L--KPFIWLNVSILREYLAVELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDI 358
Query: 357 REGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHA 416
RE I+ L+A+++ +GGYLT ++ + +Q + ED IF++R ++ ++
Sbjct: 359 RENGIDTLIAIWRDNIPVMGGYLTKDGHVEFKKAQLILQGLAKQEDAIFRRRRQVEEKKL 418
Query: 417 ERIKREKAQ 425
KR K +
Sbjct: 419 ANEKRRKEE 427
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 173/293 (59%), Gaps = 19/293 (6%)
Query: 537 DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFY 596
D V+L E G+ +RYYE+KF P+++E R V Y EGL WV+ YY++G SW W+Y
Sbjct: 583 DTVRLWEEGYADRYYEQKFGVD-PQDKE-FRHKVARAYAEGLAWVLLYYFQGCPSWNWYY 640
Query: 597 PYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPI 656
PYHYAPFA+D D+ +SFE G PFKPF QL+GV P++S+HA+PE + LM DP S I
Sbjct: 641 PYHYAPFAADFVDIGDMELSFEKGTPFKPFEQLMGVLPASSNHAIPEVFHDLMQDPESEI 700
Query: 657 SDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLF 716
DFYP DF VD+NGK+++WQG+ LPFIDE RLL ++K L+++E RN++ ++L
Sbjct: 701 IDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLSDDERHRNTVGREVLL 760
Query: 717 VLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAG-DPHPPVFRS 775
+ HPL + K++ K LN +S+G+ G + PH S
Sbjct: 761 LSDGHPLYQDL------VANFYSKKQGAPKYTLNMRVSEGLAGRVERNETYIPH----SS 810
Query: 776 PVASMED-----IMGNQVLCAIYKLPDA-HKHVTRPPAGVIFPKKIVQLEDLK 822
V+S+E+ + ++ L Y++P + H H + GV FP + D++
Sbjct: 811 LVSSLEEYGMPTLEDDRSLTVNYEIPKSNHIHKSMLLRGVKFPPPALDNADIQ 863
>sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAT1 PE=3 SV=3
Length = 1233
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/446 (52%), Positives = 318/446 (71%), Gaps = 18/446 (4%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDG-----VKIPVDTSKPNPNGLEYDNLYLDM 55
MGVPA +RWL++KYP +V+ V EE+P G + +P+DTS PNPNG E+D LYLDM
Sbjct: 1 MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDM 60
Query: 56 NGIIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQR 115
NGI+HPC HPE +PAP T +E+ +F Y +R+ MVRPR+LL MAIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGKPAPETEEEMMVEVFAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQQR 120
Query: 116 SRRFRASKDAADSAAEEERLRQEFEREGRKLP--PKSDSQVFDSNVITPGTEFMAVLSIA 173
SRRFRA+K+A + EE+ E++ +G K + +DSN ITPGT FM +L+ +
Sbjct: 121 SRRFRAAKEAREKHEEEQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGTPFMDLLAAS 180
Query: 174 LQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLD 233
L+Y++ ++N+DPGW+ I+VI+SDA+VPGEGEHKIM ++R QR+ P +DPNT+H +YGLD
Sbjct: 181 LRYWVAQKINSDPGWKDIQVIISDASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIYGLD 240
Query: 234 ADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKG 292
ADLIML+LATHE +F +LRE VF + K C LCGQPGH AA+C G AK+K+G+ DE
Sbjct: 241 ADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQHDE-- 298
Query: 293 DEVVVP----KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFL 348
+ P KKP+ FL + TLREYL+ E IP PF DLE +DD++F+ FFVGNDFL
Sbjct: 299 ---IAPTPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFVGNDFL 355
Query: 349 PHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIF-QK 407
PH+P+LEIR+GAI+ L+ ++KKE A+GGYLT+ + L R + + + S ED IF ++
Sbjct: 356 PHLPSLEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQLILSGLASEEDEIFRRR 415
Query: 408 RARLHQRHAERIKREKAQARRGDDVE 433
+ +R R +RE+ Q RR +++
Sbjct: 416 KEDEDRRETNRKRREEMQQRRDKELD 441
Score = 243 bits (619), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 179/293 (61%), Gaps = 13/293 (4%)
Query: 536 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 595
ED VK+ EPG++ERYY+EKF + + R+ VV Y EGLCWV+ YYY+GV SWQW+
Sbjct: 660 EDTVKMWEPGYRERYYKEKFGVDLSDT--DFRRSVVKSYIEGLCWVLAYYYQGVPSWQWY 717
Query: 596 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 655
YP+H++PFA+D +DL+ +I F+LG PFKPF QL+GV P+ S ++P + LMT+ +S
Sbjct: 718 YPFHFSPFAADFEDLESLDIQFQLGSPFKPFEQLMGVLPADSRASIPPAFHPLMTESDSD 777
Query: 656 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 715
I DFYP++FE+DMNGK+ +WQG+A LPFIDE RLLD +K+ L+E+E RRN + L
Sbjct: 778 IIDFYPSEFEIDMNGKKMAWQGVALLPFIDEKRLLDALKERYPLLSEDEVRRNGFGNNTL 837
Query: 716 FV----LLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP 771
FV L L IY + +RV V NP LS G+ G++ P
Sbjct: 838 FVGNESRLYDFLCEEIYAKKRTTDDGETPKRVAV----NPALSGGITGFVKPDPVCVPGS 893
Query: 772 VFRSPVAS--MEDIMGNQVLCAIYKLPDAHK-HVTRPPAGVIFPKKIVQLEDL 821
F SP+ S + DI ++ + +Y P+ H + G+ PK+I+ ++
Sbjct: 894 TFNSPLTSQALHDIHNDRSISVLYDFPEQKTPHRSVLLKGLKPPKRILSAAEI 946
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 286/737 (38%), Positives = 408/737 (55%), Gaps = 90/737 (12%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MG+P F+RW++E+YPL + +IE + +IP E+DNLYLDMNGI+H
Sbjct: 1 MGIPKFFRWMSERYPLC-SQLIEND-------RIP-----------EFDNLYLDMNGILH 41
Query: 61 PCFHPEDRPA--PTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C H D + P +E++ +F+YI+ LF ++P+KLLYMA+DG APRAKMNQQRSRR
Sbjct: 42 NCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRR 101
Query: 119 FRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
FR +KDA D+ R + ER G P + FDSN ITPGT FM +S L Y+I
Sbjct: 102 FRTAKDAHDA-------RLKAERNGEDFPEEQ----FDSNCITPGTTFMERVSRQLYYFI 150
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
H ++ ND W+ I+VI S + PGEGEHKIM Y+R Q+ P Y+PNTRHCLYGLDADLIM
Sbjct: 151 HKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLIM 210
Query: 239 LALATHEVHFSILR-EVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVV 297
L L +H+ HF +LR EV F P ++ ++K A +
Sbjct: 211 LGLLSHDPHFCLLREEVTFGPASRN-----------------RSKELAHQ---------- 243
Query: 298 PKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLECIVDDFIFMCFFVGNDFLPHMPTLE 355
+ LH+ LREYL++EF+ F DLE I+DDFI + FFVGNDFLPH+P L
Sbjct: 244 ---KFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLH 300
Query: 356 IREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRH 415
I EGA+ L+ ++YKK + GGY+ + ++ R+E + + ++E IF+ + +
Sbjct: 301 INEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFKAEVSETKNN 360
Query: 416 AERIKRE----KAQARRGDDVEPLA--QPDSLVPVSRFHGSR---LASGPSPSPYQQSEC 466
K K +D++ + Q + + + +F SR + + S Q
Sbjct: 361 GNSDKPSFDFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFIDFSANISSVDQ-RF 419
Query: 467 VGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKEL----L 522
+ RL N S K+ ++ + + E + E + + ++E + L++ L
Sbjct: 420 LRRLCNDLHLSFS--KIIKVDGTHLLRITFRDLEFNDEDEDEIEQDEIERVLQKYDNIPL 477
Query: 523 RDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
++ A N E+D ++ WK+ YY K + EE K + RY EGL WV+
Sbjct: 478 LNEEQALKEKNVEKDFIQ-----WKDDYYRSKVGFSYYD--EEALKAMAERYVEGLQWVL 530
Query: 583 HYYYEGVCSWQWFYPYHYAPFASD-LKDLDQFNISFELGHPFKPFNQLLGVFPSASSHAL 641
YYY G SW W+Y YH+AP SD LK LD I F++G PF+PF QL+ V P+ S +
Sbjct: 531 FYYYRGCQSWGWYYNYHFAPKISDVLKGLD-VKIDFKMGTPFRPFEQLMAVLPARSQALV 589
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +R LM + SPI DFYP +F +D NGK SW+ + +PFIDE RL+D + + LT
Sbjct: 590 PPCFRDLMVNSESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLT 649
Query: 702 EEEARRNSIMADMLFVL 718
EEE +RNS A +F L
Sbjct: 650 EEERKRNSFNAPTVFSL 666
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/443 (50%), Positives = 301/443 (67%), Gaps = 16/443 (3%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDG-----VKIPVDTSKPNPNGLEYDNLYLDM 55
MGVPA +RWL++KYP +V V E+ P I G V+ P+ PNPNG E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 56 NGIIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQR 115
NGI+HPC HPE RPAP T +E+ +F Y +R+ M RPRK+L MAIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR 120
Query: 116 SRRFRASKDAADSAAEEERLRQEFEREGRKLPPKS-DSQVFDSNVITPGTEFMAVLSIAL 174
SRRFRA+++AAD E + FE G + ++ + + +D+N ITPGT FM +LSI+L
Sbjct: 121 SRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL 180
Query: 175 QYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDA 234
+Y++ +L DPGW+ +K+ILSD++VPGEGEHKIM ++R QR+ P +D NT H +YGLDA
Sbjct: 181 KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA 240
Query: 235 DLIMLALATHEVHFSILREVVFTPGQQD--KCFLCGQPGHLAANCEGKAKRKAGEFDEKG 292
DLIML+LATHE HF +LRE VF + C CG+ GH+AANC+ K K D
Sbjct: 241 DLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFK----DPNV 296
Query: 293 DEVVVPK--KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 350
EV + KP+ FL + LREYL E +P PF DLE +DD+IFM FFVGNDFLPH
Sbjct: 297 AEVAKTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPH 356
Query: 351 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 410
+P+LEIREGAI++L+ +++ E +GGYLT+ K +L R + ++ + ED IFQKR
Sbjct: 357 LPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKD 416
Query: 411 LHQR--HAERIKREKAQARRGDD 431
+R H+++ +R + R+ +D
Sbjct: 417 DEERQEHSQKRRRIEEHKRQDED 439
Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 165/273 (60%), Gaps = 19/273 (6%)
Query: 536 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 595
ED VKL EPG++ERYYE+KF K ERE K V Y EGLCWV+ YYY+GV +W WF
Sbjct: 686 EDDVKLWEPGYRERYYEKKFGVKL-SEREFIDK-VTKSYMEGLCWVLEYYYQGVPAWDWF 743
Query: 596 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 655
YPYHYAPFA D +D+ +I FE PFKPF QLLGVFP+AS LPE + LM D +SP
Sbjct: 744 YPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLMIDEDSP 803
Query: 656 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 715
I DFYP DFE+DMNGK+ +WQG+A LPFID+ RLL +K E L+++E RRNS +++
Sbjct: 804 ILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNSWGDNVM 863
Query: 716 FVLLSHPLSASIYTLDEHCKQ---LKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPV 772
F+ +PL D C + L+ K+ + + + S G+ G + P
Sbjct: 864 FIANENPL------YDLFCDKLYGLRAKDPIPIDTK----ASYGITGSVLPDPNCVPAST 913
Query: 773 FRSPVASME---DIMGNQVLCAIYKLP-DAHKH 801
F +P+ S+ D+ N + Y P AH H
Sbjct: 914 FDTPIPSISECPDLNPNDSISVRYYFPRQAHPH 946
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/443 (50%), Positives = 301/443 (67%), Gaps = 16/443 (3%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDG-----VKIPVDTSKPNPNGLEYDNLYLDM 55
MGVPA +RWL++KYP +V V E+ P I G V+ P+ PNPNG E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 56 NGIIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQR 115
NGI+HPC HPE RPAP T +E+ +F Y +R+ M RPRK+L MAIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR 120
Query: 116 SRRFRASKDAADSAAEEERLRQEFEREGRKLPPKS-DSQVFDSNVITPGTEFMAVLSIAL 174
SRRFRA+++AAD E + FE G + ++ + + +D+N ITPGT FM +LSI+L
Sbjct: 121 SRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL 180
Query: 175 QYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDA 234
+Y++ +L DPGW+ +K+ILSD++VPGEGEHKIM ++R QR+ P +D NT H +YGLDA
Sbjct: 181 KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA 240
Query: 235 DLIMLALATHEVHFSILREVVFTPGQQD--KCFLCGQPGHLAANCEGKAKRKAGEFDEKG 292
DLIML+LATHE HF +LRE VF + C CG+ GH+AANC+ K K D
Sbjct: 241 DLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFK----DPNV 296
Query: 293 DEVVVPK--KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 350
EV + KP+ FL + LREYL E +P PF DLE +DD+IFM FFVGNDFLPH
Sbjct: 297 AEVAKTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPH 356
Query: 351 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 410
+P+LEIREGAI++L+ +++ E +GGYLT+ K +L R + ++ + ED IFQKR
Sbjct: 357 LPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKD 416
Query: 411 LHQR--HAERIKREKAQARRGDD 431
+R H+++ +R + R+ +D
Sbjct: 417 DEERQEHSQKRRRIEEHKRQDED 439
Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/272 (46%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 536 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 595
ED VKL EPG++ERYYE+KF K ERE K V Y EGLCWV+ YYY+GV +W WF
Sbjct: 686 EDDVKLWEPGYRERYYEKKFGVKL-SEREFIDK-VTKSYMEGLCWVLEYYYQGVPAWDWF 743
Query: 596 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 655
YPYHYAPFA D +D+ +I FE PFKPF QLLGVFP+AS LPE + LM D +SP
Sbjct: 744 YPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLMIDEDSP 803
Query: 656 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 715
I DFYP DFE+DMNGK+ +WQG+A LPFID+ RLL +K E L+++E RRNS +++
Sbjct: 804 ILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNSWGDNVM 863
Query: 716 FVLLSHPLSASIYTLDEHCKQLKIKERVEVKE--RLNPELSDGMNGYISPCAGDPHPPVF 773
F+ +PL D C +L +V + ++ + S G+ G + P F
Sbjct: 864 FIANENPL------YDLFCDKLYGLRAKDVSKPIPIDTKASYGITGSVLPDPNCVPASTF 917
Query: 774 RSPVASME---DIMGNQVLCAIYKLP-DAHKH 801
+P+ S+ D+ N + Y P AH H
Sbjct: 918 DTPIPSISECPDLNPNDSISVRYYFPRQAHPH 949
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/743 (36%), Positives = 405/743 (54%), Gaps = 91/743 (12%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MG+P F+R+++E++P+++ +I+G +IP E+DNLYLDMN I+H
Sbjct: 1 MGIPKFFRYISERWPMILQ--------LIEGTQIP-----------EFDNLYLDMNSILH 41
Query: 61 PCFH--PEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C H +D T +EVF + YID LF ++P+K+ YMAIDGVAPRAKMNQQR+RR
Sbjct: 42 NCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARR 101
Query: 119 FRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
FR + DA E+ L++ E G ++P + FDSN ITPGTEFMA L+ LQY+I
Sbjct: 102 FRTAMDA------EKALKKAIEN-GDEIP---KGEPFDSNSITPGTEFMAKLTKNLQYFI 151
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
H +++ND W ++++I S VPGEGEHKIM+++R ++ ++ NTRHC+YGLDADLIM
Sbjct: 152 HDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLIM 211
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L L+TH HF++LRE V T G++ N E K+ +
Sbjct: 212 LGLSTHGPHFALLREEV-TFGRR--------------NSEKKS---------------LE 241
Query: 299 KKPYQFLHIWTLREYLDYEFR--IPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEI 356
+ + LH+ LREY++ EF+ FE + E I+DDFI + F +GNDFLP++P L +
Sbjct: 242 HQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHL 301
Query: 357 REGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK---RARLHQ 413
+GA +L+ +K+ GY+ + K +L+R+ ++ + +E F+K
Sbjct: 302 NKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEKDDIDVEWFN 361
Query: 414 RHAERIKR--EKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLD 471
+ E I E+ + R G + Q + + + +L SP E + L+
Sbjct: 362 KQLENISLEGERKRQRVGKKLLVKQQKKLIGSIKPWLMEQLQEKLSPD--LPDEEIPTLE 419
Query: 472 NGKGTSGRPH----KVPRLSSGATIGAAIVEAENSFETD-----PQENKEEFKAK---LK 519
K + H K G I + + S + D P E +EEF+ + ++
Sbjct: 420 LPKDLDMKDHLEFLKEFAFDLGLFITHSKSKGSYSLKMDLDSINPDETEEEFQNRVNSIR 479
Query: 520 ELLRDKSDAFNSDNPEE---DKVKLGE--PGWKERYYEEKFNAKTPEEREETRKDVVLRY 574
+ ++ +A ++ EE +K E WK YY +K T + EE +D+ Y
Sbjct: 480 KTIKKYQNAIIVEDKEELETEKTIYNERFERWKHEYYHDKLKFTT--DSEEKVRDLAKDY 537
Query: 575 TEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL-KDLDQFNISFELGHPFKPFNQLLGVF 633
EGL WV++YYY G SW W+YP+HYAP SDL K LDQ +I F+L PF PF QL+ V
Sbjct: 538 VEGLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQ-DIEFDLSKPFTPFQQLMAVL 596
Query: 634 PSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEV 693
P S + +P +R LM D SPI DFYP + ++D NGK W+ + + F+DE RL++ +
Sbjct: 597 PERSKNLIPPAFRPLMYDEQSPIHDFYPAEVQLDKNGKTADWEAVVLISFVDEKRLIEAM 656
Query: 694 KKIEHTLTEEEARRNSIMADMLF 716
+ L+ EE RN D+++
Sbjct: 657 QPYLRKLSPEEKTRNQFGKDLIY 679
>sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4
Length = 945
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/429 (48%), Positives = 291/429 (67%), Gaps = 21/429 (4%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP +++ VIE+ P V+DGVK+P+D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVIEDTPQVVDGVKLPIDYSAANPNG-ELDNLYLDMNGIVH 59
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE++PAP T DE+ +F+Y +R+ M RPRK+L +A+DGVAPRAKMNQQRSRRFR
Sbjct: 60 PCSHPENKPAPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRSRRFR 119
Query: 121 ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQ-VFDSNVITPGTEFMAVLSIALQYYIH 179
+++DA + E+ R+ E E G + ++ +D+N ITPGT FM L+ AL+Y+
Sbjct: 120 SARDAKLANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGTPFMDKLAAALRYWTS 179
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
+L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR Y+PNT HC+YGLDADLI L
Sbjct: 180 FKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIFL 239
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
LATHE HF ILRE VF QD Q H + + K+ E D +
Sbjct: 240 GLATHEPHFKILREDVFA---QDNRRRPRQ--HDMMDMSAEEKQALIEQDA--------E 286
Query: 300 KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
KP+ +LH+ LREYL E +P PF DLE +DD++FMCFF GNDFLPH+P+L++RE
Sbjct: 287 KPFLWLHVSVLREYLSAELLVPRLPFHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVREN 346
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERI 419
+I++L+ ++K +L YLT K +L+ VE + +G+ E IF+K ++ + +
Sbjct: 347 SIDILVDIWKAVLPSLKTYLTCDGKLNLKGVEKVLAQLGNRESDIFKK------KYEQEL 400
Query: 420 KREKAQARR 428
++++AQ RR
Sbjct: 401 RKKEAQERR 409
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 539 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 598
V+L EPG+ +RYY+ KF+ T + RK VV Y EG+ WV+ YYY+G SW W+YPY
Sbjct: 583 VRLFEPGYHDRYYQAKFHVPT-GSIDALRKKVVRSYVEGISWVLLYYYQGCPSWTWYYPY 641
Query: 599 HYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISD 658
HYAPFASD + +++F+LG PF P+ QL+ V P+ASSH LP+ +R LM+DP S I D
Sbjct: 642 HYAPFASDFTGISDLSVTFDLGEPFLPYEQLMSVLPAASSHNLPDVFRSLMSDPESEIYD 701
Query: 659 FYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 717
FYP +F +DMNG++ +W+ + LPFIDE RLL V++ L+E E RN ++L +
Sbjct: 702 FYPEEFPIDMNGEKMAWKALVLLPFIDETRLLAAVRQKYPLLSEAERARNVRRDEVLLI 760
>sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAT1 PE=1 SV=3
Length = 1006
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/444 (47%), Positives = 290/444 (65%), Gaps = 17/444 (3%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP +++ V+EE+P ++DGV +P+D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVH 59
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE++P P T DE+ +F+Y +R+ M RPRK+L MA+DGVAPRAKMNQQR+RRFR
Sbjct: 60 PCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFR 119
Query: 121 ASKDA-ADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIH 179
+++DA ++ A EE +RQ E + + +DSN ITPGT FM L+ AL+Y+
Sbjct: 120 SARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWTA 179
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
+L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR P Y+PNT HC+YGLDADLI L
Sbjct: 180 FKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFL 239
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
LATHE HF ILRE VF + + +L + K +F +K + +
Sbjct: 240 GLATHEPHFKILREDVFAQDNRKR-------NNLKDTINMTEEEK--QFLQKQNS----E 286
Query: 300 KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
+P+ +LHI LREYL E +P PF DLE +DD++FMCFF GNDFLPH+P L++RE
Sbjct: 287 QPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVREN 346
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERI 419
+I++L+ ++K L Y+T +L VE +Q +GS E IF+ R R E
Sbjct: 347 SIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEARKKEAF 406
Query: 420 KREKAQAR--RGDDVEPLAQPDSL 441
+R KAQ +G D P + L
Sbjct: 407 ERRKAQKNMSKGQDRHPTVATEQL 430
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 125/184 (67%), Gaps = 5/184 (2%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 584
K+ F++D + VKL EPG+ ERYY KF+ TP++ E+ RKD+V Y EG+ WV+ Y
Sbjct: 587 KNGVFDTD----EFVKLFEPGYHERYYTAKFHV-TPQDIEQLRKDMVKCYIEGVAWVLMY 641
Query: 585 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEH 644
YY+G SW WFYPYHYAP A+D I FE G PF P+ QL+ V P+AS HALP+
Sbjct: 642 YYQGCASWNWFYPYHYAPLATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKI 701
Query: 645 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 704
+R LM++P+S I DFYP +F +DMNGK+ SWQGIA LPFID+ RLL V+ L++ E
Sbjct: 702 FRSLMSEPDSEIIDFYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAE 761
Query: 705 ARRN 708
RN
Sbjct: 762 RARN 765
>sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3
SV=3
Length = 1018
Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/432 (48%), Positives = 289/432 (66%), Gaps = 27/432 (6%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP +++ V+EE ++DGV +P+D + PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEPQQLVDGVALPIDYAGPNPNG-ELDNLYLDMNGIVH 59
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE++P P T D++ +F+Y +R+ M RPRK+L +A+DGVAPRAKMNQQRSRRFR
Sbjct: 60 PCSHPENKPPPETEDDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQQRSRRFR 119
Query: 121 ASKDA-ADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMAVLSIALQYYI 178
+++DA ++ A EE +RQ+ E+ G+ + + + +DSN ITPGT FM L+IAL+Y+
Sbjct: 120 SARDAEIENEAREEIMRQK-EQLGQIIDDSVKNKKTWDSNAITPGTPFMDKLAIALRYWT 178
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR P Y+PNT HC+YGLDADLI
Sbjct: 179 AFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIF 238
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVV- 297
L LATHE HF ILRE VF + + K DE+ D +
Sbjct: 239 LGLATHEPHFKILREDVFAQDNRKR---------------NNVKDTIDMTDEEKDLIRKQ 283
Query: 298 -PKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEI 356
+KP+ +LHI LREYL E P PF DLE +DD++FMCFF GNDFLPH+P L++
Sbjct: 284 DSEKPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDV 343
Query: 357 REGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHA 416
RE +I++L+ ++K L Y+T K +L VE ++ +G+ E IF+ RH
Sbjct: 344 RENSIDILLDIWKSILPRLKTYMTCDGKLNLESVEMVLKELGNREGDIFKT------RHI 397
Query: 417 ERIKREKAQARR 428
+ I++++A RR
Sbjct: 398 QEIRKKEANERR 409
Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 121/182 (66%), Gaps = 1/182 (0%)
Query: 536 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 595
++ VKL EPG+ +RYY EKF+ + P + K +V Y EG+ WV+ YYY+G SW W+
Sbjct: 594 DEAVKLFEPGYHDRYYIEKFHIE-PNQIPALSKHMVKCYIEGVSWVLMYYYQGCASWTWY 652
Query: 596 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 655
YPYHYAP A D D +I FELG PF P+ QL+ V P+AS H LPE +R LM+ +S
Sbjct: 653 YPYHYAPLAEDFVDFHDLDIKFELGEPFLPYEQLMSVLPAASGHNLPEVFRPLMSSEDSE 712
Query: 656 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 715
I DFYPT+F +DMNGK+ SWQGIA LPFIDE RLL + L+E+E RRN+ +L
Sbjct: 713 IIDFYPTEFPIDMNGKKMSWQGIALLPFIDETRLLTATRNQYKFLSEDEKRRNTRNDPVL 772
Query: 716 FV 717
+
Sbjct: 773 LI 774
>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1
Length = 1706
Score = 316 bits (809), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 244/412 (59%), Gaps = 64/412 (15%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP FYRW++E+YP +++V++E +IP E+DNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-CLSEVVKEH-------QIP-----------EFDNLYLDMNGIIH 41
Query: 61 PCFHPEDRPA--PTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C HP D + D++F +F Y++ LF +++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
FR++K+A E+++++ E+ G LP ++ FDSN ITPGTEFMA L L+Y++
Sbjct: 102 FRSAKEA------EDKIKKAIEK-GETLPTEAR---FDSNCITPGTEFMARLHEHLKYFV 151
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+++++ D W+ + + S PGEGEHKIM ++R ++ P +DPNTRHCLYGLDADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L L +HE HFS+LRE V G+ K V P
Sbjct: 212 LGLTSHEAHFSLLREEVRFGGK------------------------------KTQRVCAP 241
Query: 299 KK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLE 355
++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGNDF+PH+P L
Sbjct: 242 EETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLH 301
Query: 356 IREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 407
I A+ LL Y LGGY+ + +L R E ++ + ++ F +
Sbjct: 302 INHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
Query: 520 ELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLC 579
E++ K D + ++D + +K YY K + + D Y + +
Sbjct: 408 EMITSK-DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQ 464
Query: 580 WVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSH 639
W++HYYY GV SW W+YPYHYAPF SD+ ++ I FELG PFKPF QLL V P+AS +
Sbjct: 465 WILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKN 524
Query: 640 ALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHT 699
LP Y+ LMT+ +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+
Sbjct: 525 LLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHS 584
Query: 700 LTEEEARRN 708
L +EE +RN
Sbjct: 585 LKKEERKRN 593
>sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1
Length = 1719
Score = 316 bits (809), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 243/412 (58%), Gaps = 64/412 (15%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP FYRW++E+YP +++V++E +IP E+DNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-CLSEVVKEH-------QIP-----------EFDNLYLDMNGIIH 41
Query: 61 PCFHPEDRPA--PTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C HP D + D++F +F Y++ LF +++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
FR++K+A E+++++ E+ G LP ++ FDSN ITPGTEFMA L L+Y++
Sbjct: 102 FRSAKEA------EDKIKKAIEK-GETLPTEAR---FDSNCITPGTEFMARLHEHLKYFV 151
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+++++ D W+ + + S PGEGEHKIM ++R ++ P +DPNTRHCLYGLDADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L L +HE HFS+LRE V G+ K V P
Sbjct: 212 LGLTSHEAHFSLLREEVRFGGK------------------------------KTQRVCAP 241
Query: 299 KK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLE 355
++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGNDF+PH+P L
Sbjct: 242 EETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLH 301
Query: 356 IREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 407
I A+ LL Y LGGY+ + +L R E ++ + ++ F +
Sbjct: 302 INHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSE 353
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D F + ++D + +K YY K + E + Y + + W++HYYY
Sbjct: 414 DNFEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--EFLANQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD++ + I FELG PFKPF QLL V PSAS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
>sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6
GN=IIV6-012L PE=3 SV=1
Length = 624
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 170/424 (40%), Gaps = 125/424 (29%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MG+ F++WL + E ID + N D L +DMNGIIH
Sbjct: 1 MGIKYFFKWLKTNHS--------ESIKCID----------RHDNSQCIDVLLIDMNGIIH 42
Query: 61 PC------FHPEDRPAPTTFDE-VFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQ 113
+ P D+ V+ + IDR+ + +P++L+ + IDGVAPR+K Q
Sbjct: 43 NSAQEVYGYGSFSFPKENACDKKVYSLVCRQIDRMVIQFKPKELI-LCIDGVAPRSKQIQ 101
Query: 114 QRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIA 173
QR RRF A+ D EF + K ++ FDSN I+PGTEFM L
Sbjct: 102 QRQRRFLAAHDRKKPGT-------EFNFDCN----KGNTSKFDSNSISPGTEFMHNLGRY 150
Query: 174 LQYYIHLRLNNDPG------------------------------WEKIKVILSDANVPGE 203
+ IH++ P W + V+ ++ V GE
Sbjct: 151 ID--IHIKKKQKPAFTGRETTDAPQNNWRNKDQSWRQKVDDTAEWSNLTVVFANDKVSGE 208
Query: 204 GEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML---ALATHEV-HFSILREVVFTPG 259
GEHK++ Y+R N +C+YG DADLIML AL T + + +LR+ +P
Sbjct: 209 GEHKLLDYIRKYGN-----SYYTYCIYGSDADLIMLSMSALTTTAIKNIYVLRDEYKSPN 263
Query: 260 QQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFR 319
L P + + + DEK
Sbjct: 264 Y----LLINIPNFVKNLIKDVKSNWTDKLDEKR--------------------------- 292
Query: 320 IPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYL 379
++DFIFMCF VGNDFLPH+P++EI I ++A Y K Y+
Sbjct: 293 ------------FINDFIFMCFMVGNDFLPHIPSIEIMTNGIESMLAFYTKN----KNYI 336
Query: 380 TDGS 383
TD +
Sbjct: 337 TDNN 340
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 65/256 (25%)
Query: 500 ENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKT 559
E S + N E F+ +LL S ++ ++ V + E ++E+Y ++ F
Sbjct: 362 EQSLCNEKVNNSEYFR---DDLLESSSFLVTNEFGQQKCVNINE--YREKYMKKHF---- 412
Query: 560 PEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL------------ 607
E+ + L Y EG+ WV+ YY V W+W Y Y YAP + +
Sbjct: 413 -----ESSSEASLMYLEGMQWVLSYYTLKVPDWEWSYKYDYAPNLTSIIEAMSFKQIGGT 467
Query: 608 --KDLDQFNI-------SFELGHPFKPFNQLLG-VFPSA--------------SSHALPE 643
K+ +Q+ + S E+ F + VF ++ SS A+P
Sbjct: 468 SKKEKNQYKLFPVNSVNSTEVATSSSGFQKSFSMVFQNSLQNTKDWRDKKTKTSSDAIPP 527
Query: 644 HYRKLMTDP---------------NSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEAR 688
++ L P + + + P + +D GKR W+GI LP +D+
Sbjct: 528 FHQLLFILPPDSSDLLPYPLCEALTNELKIYAPKELIIDRAGKRQEWEGIVLLPKLDQKV 587
Query: 689 LLDEVKKIEHTLTEEE 704
+ + K + +TE++
Sbjct: 588 VTECYLKYKPYVTEKK 603
>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
GN=IIV3-059L PE=3 SV=1
Length = 560
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 166/402 (41%), Gaps = 109/402 (27%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MG+ F+RW + +P V K K + + E L LD+NGIIH
Sbjct: 1 MGIKYFFRWYKDSFPNTVT-------------KYSTKNHKKSQDTDEPFLLLLDLNGIIH 47
Query: 61 P-C--------FHPED--RPAPTTFD-----EVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
C F P++ + +P + V++ + ID L +V PR+L+ + IDG
Sbjct: 48 TSCQKIYKYGSFEPKNLLKKSPPVYKGEKDVLVYEDVLASIDSLVALVEPRELV-LCIDG 106
Query: 105 VAPRAKMNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGT 164
VAP +K QQR RRF K FDSN I+PGT
Sbjct: 107 VAPVSKQIQQRQRRFITHKTDGG---------------------------FDSNCISPGT 139
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVI-LSDANVPGEGEHKIMSYVRLQRNLPGYDP 223
EF+ L + L+ ++ +L + W + I D+ VPGEGEHK+ ++R + D
Sbjct: 140 EFLFQLGLYLKTHLESKLEKE--WLNVSTIYFMDSLVPGEGEHKLFDFLRTHQT-RIVDT 196
Query: 224 NTRHCLYGLDADLIMLALATHEVH-----FSILREVVFTPGQQDKCFLCGQPGHLAANCE 278
+ G DADLIML+L + SILRE + T + D +L L
Sbjct: 197 KFNIVVVGNDADLIMLSLLVSVLFIKENPLSILREDL-TSKKLD--YLLVDINLLKDTIY 253
Query: 279 GKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIF 338
A R F PY D E ++ DF+
Sbjct: 254 QNASRDKPRF-----------TPY-------------------------DFEFVICDFVV 277
Query: 339 MCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLT 380
MCF +GNDFLP +P I +G +++L+ K + GY+T
Sbjct: 278 MCFMIGNDFLPSVPLFNIYDGGLDMLL----KYYFTTAGYIT 315
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 565 ETRKDVVLRYTEGLCWVMHYY-YEGVC-SWQWFYPYHYAPFASDLKDLDQFNISFELGHP 622
+ K +V Y E + W+ +YY Y VC W +YP +AP A DL ++F
Sbjct: 399 KITKSLVHSYLEEIKWIFNYYAYGAVCIDWNMYYPSQFAPTALDLSFA---TLTFTSQSG 455
Query: 623 FK--------PFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYS 674
K PF QLL + P SS LP+ KL+ + D +P + ++D +GK
Sbjct: 456 LKERKKCLTDPFFQLLCILPPHSSDLLPDPLNKLLV---QKLVDGHPIEIKMDYDGKLNE 512
Query: 675 WQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 709
W+ I LP +D ++L H ++E+ +RN+
Sbjct: 513 WEAIPILPPLDYNKILKMYNDHIHQCSKEDLKRNT 547
>sp|P23252|CR2_HORVU Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1
Length = 202
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 54/75 (72%)
Query: 720 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVAS 779
+HP+S IY+L L K+R E+KE+L+P S GMNGYIS C GDP P VFRSPV
Sbjct: 2 AHPISPYIYSLSSKFGHLADKDRNEIKEQLDPSASGGMNGYISLCGGDPSPLVFRSPVDG 61
Query: 780 MEDIMGNQVLCAIYK 794
+EDIM NQV+C+IYK
Sbjct: 62 LEDIMDNQVICSIYK 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,218,234
Number of Sequences: 539616
Number of extensions: 24087161
Number of successful extensions: 85167
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 643
Number of HSP's that attempted gapping in prelim test: 72457
Number of HSP's gapped (non-prelim): 7123
length of query: 1120
length of database: 191,569,459
effective HSP length: 128
effective length of query: 992
effective length of database: 122,498,611
effective search space: 121518622112
effective search space used: 121518622112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)