BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001224
(1120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 157 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 205 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 196 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 254 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 300 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 159 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 207 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 198 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 256 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 302 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 131 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 179 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 170 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 228 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 274 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 136 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 184 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 217
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 175 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 233 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 279 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 140 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 188 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 221
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 179 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 237 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 283 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 152 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 200 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 191 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 249 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 295 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 936 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 989
+ TG +T A SD H ++ L+V ++ I++T
Sbjct: 134 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
+C+K + + + P++ FS + + + A LD T+
Sbjct: 181 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 173 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 231 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 277 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 927
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991 CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1022
C+K + + + P++ FS + + + A LD
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 938
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 466 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 513
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 514 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 547
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
SV V +SPDG A V++++ +G ++ Q L H VN +AF P+ Q
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
G + +T G GV F +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 608 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 650
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 36/224 (16%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 399
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLW--- 453
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
G+ T+ + R V F +A DD ++K W
Sbjct: 454 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 494
Query: 608 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 650
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 495 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 39/246 (15%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 71
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
+ + DDKT+K+W+ NG GH + V V + Q I S + D +K W +
Sbjct: 72 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 128
Query: 548 N-LGSRVDYEAPGRWCTTMAYSADGT---------------------RTYQGFRKRSLGV 585
L + + W +A+S DG +T G GV
Sbjct: 129 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 644
F +A DD ++K W+ + QLL ++ G +S R + F+ DG +A +++
Sbjct: 187 A-FSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASD 241
Query: 645 DNGIKI 650
D +K+
Sbjct: 242 DKTVKL 247
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 153
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 154 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW--- 207
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
G+ T+ + R V F +A DD ++K W
Sbjct: 208 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 248
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
+ + QLL ++ G + + F DG +A +++D +K+
Sbjct: 249 NRNG-QLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 522
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 461 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 520
V++ ++AH V +AFS P+ Q + + DDKT+K+W+ NG GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 62
Query: 521 VCPHHKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGT------ 572
V + Q I S + D +K W + L + + + R +A+S DG
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQTIASAS 117
Query: 573 ---------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 617
+T G GV F +A DD ++K W+ + QLL +
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNG-QLLQT 175
Query: 618 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
+ G + + F+ DG +A +++D +K+
Sbjct: 176 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D+ IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
+G + LQ TG + + + V F D + + + ++
Sbjct: 496 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Query: 997 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1028
SS + FS D Q + + D TV ++
Sbjct: 547 GHSSS--VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW- 995
+G + LQ TG H ++ + I + + VK W
Sbjct: 250 RNG------QLLQTLTG-------------HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 996 -------VPRESSAPITHATFSCDSQLVYACFLDATVCVF 1028
S+ + FS D Q + + D TV ++
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
+G + LQ TG + + V F D + + + ++
Sbjct: 168 RNG------QLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 218
Query: 997 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC------RINPSAYLPAG 1048
SS + FS D Q + + D TV +++ L+ +N A+ P G
Sbjct: 219 GHSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
+G + LQ TG + + + V F D + + + ++
Sbjct: 455 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 997 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1028
SS + FS D Q + + D TV ++
Sbjct: 506 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
+G + LQ TG + + V F D + + + ++
Sbjct: 414 RNG------QLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 997 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1028
SS + FS D Q + + D TV ++
Sbjct: 465 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 494
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
+G + LQ TG + + + V F D + + + ++
Sbjct: 86 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 997 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1028
SS + FS D Q + + D TV ++
Sbjct: 137 GHSSS--VWGVAFSPDGQTIASASDDKTVKLW 166
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 937 SDGWEKQKNRFLQIPTGRTPT 957
+G + LQ TG + +
Sbjct: 332 RNG------QHLQTLTGHSSS 346
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D IA DD +++++N +++ L GHS + G+AFS + S+ D + +W+
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
+G + LQ TG + + + V F D + + + ++
Sbjct: 373 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 997 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1028
SS + FS D Q + + D TV ++
Sbjct: 424 GHSSS--VWGVAFSPDDQTIASASDDKTVKLW 453
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 937 SDGWEKQK 944
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 532
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 533 FSTALDGKIKAW 544
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 937 SDGWEKQK 944
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 532
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 533 FSTALDGKIKAW 544
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 525 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 563
+NI++I + + D + W + G DY E P G +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 564 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 602
S G G +L V +D + R ++A D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 603 SIKFWDMDSVQLLTSIDADGGLPASPRI 630
+I+ WD+++ +L+ ++ L R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 526
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 525 HKENIQFIFSTALDGKIKAW 544
+NI++I + + D + W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 526
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 27/124 (21%)
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
V++ D T+ VWD YI GH +YS H+ + S + D I+ W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER--KRCISASXDTTIRIWDLE 340
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDDFSIKF 606
N + Y+ G G + S ++FL +A D SI+
Sbjct: 341 N--------------GELXYTLQGHTALVGLLRLS----------DKFLVSAAADGSIRG 376
Query: 607 WDMD 610
WD +
Sbjct: 377 WDAN 380
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
D+ KT + N+ +DFHP + +L G + LW ++ +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 532
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 533 FSTALDGKIKAW 544
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 886 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 944
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
D+ KT + N+ +DFHP + +L G + +W ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 532
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 533 FSTALDGKIKAW 544
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 886 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 944
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 403 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 461
R+ VWD+ + + L+ LV +VN V D A +++++ + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 462 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521
R ++ H G+ + + + V++ D TI++WD GA + EGHE V +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581
+K I S A DGKIK W +L + +D AP GT + +
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 609
S V + + + +++ D +I WD
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 488 VITCGDDKTIKVWDA---TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
++TC D++I VWD T+ + + GH A V V + ++I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVW 281
Query: 545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS 603
+ + RT G KR + +Q+ ++R + +G D +
Sbjct: 282 --------------------NTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNT 317
Query: 604 IKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
I+ WD++ L ++ L IRF+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRC--IRFD 345
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 36/199 (18%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW------LYD 547
D TIK+WD + I GH V +C + E + I + + D ++ W + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLN 207
Query: 548 NLGSRVDYEAPGRW-------CTT--------MAYSADGT--RTYQGFRKRSLGVVQFDT 590
L + R+ C+ MA D T R G R ++ VV FD
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD- 265
Query: 591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
++A D +IK W+ + + + +++ A + R L+ ++DN I++
Sbjct: 266 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRL 320
Query: 651 LATSDG--IRLLRTFENLA 667
G +R+L E L
Sbjct: 321 WDIECGACLRVLEGHEELV 339
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 546
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 602
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 603 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 640
SIK WD++ Q + S + P + ++ DG L
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 641 VSTNDNGIKILATSDGIR 658
DN +++ + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 395 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 450
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 146 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 197
Query: 451 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 198 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 252
Query: 511 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 557
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 306
Query: 558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587
P CT++A+SADG + G+ + V Q
Sbjct: 307 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 546
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 602
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 603 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 640
SIK WD++ Q + S + P + ++ DG L
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 641 VSTNDNGIKILATSDGIR 658
DN +++ + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 395 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 450
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 123 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 174
Query: 451 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 175 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 229
Query: 511 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 557
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 283
Query: 558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587
P CT++A+SADG + G+ + V Q
Sbjct: 284 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 526
+ H V + F HP + +++ +D TIKVWD G + +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586
+ + + S + D IK W + + RT G ++ V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 646
+ ++A D +IK W++ + + + G +R N+DG L+A +ND
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 647 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 682
++ ++AT + LR ++ S E+S +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938
+++ +D++I++++ + + LKGH+ + ++F H+ +L S AD + +W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 939 GWE 941
G+E
Sbjct: 181 GFE 183
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548
DKTIK+WD + G GH+ V V H +FI S A D ++ W Y N
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKN 369
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
+++C DDKT++VWD N HE V S+ H + ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 933 CVW 935
VW
Sbjct: 343 NVW 345
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/503 (17%), Positives = 175/503 (34%), Gaps = 74/503 (14%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
L + H V FS ++ + +CG DKT++V+ A G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584
+ +FI + ++D K+K W + + + TY ++ +
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--------------------NSMTGELVHTYDEHSEQ-VN 709
Query: 585 VVQFDTTKNRFLAA--GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 642
F + + L A D +K WD++ + ++ G + RF+ D LLA
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDKLLASC 767
Query: 643 TNDNGIKIL-ATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXXXXXXXXXX 701
+ D +K+ ATS R + + E+ + +
Sbjct: 768 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 702 XXM-VSIPGMNGDVRS-------LADVKPR----ITEESNDKSKVWKLTELSEPNQCRSL 749
+ G+ G++ + D P+ + S ++W S+ CR
Sbjct: 828 FLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG- 886
Query: 750 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809
+ + ++F+ G++ L + + LW+ ++ +NS+ V +
Sbjct: 887 ------HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 810 SGIMMTNDV------------TDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNXXXXX 856
++ + + D E V C LS + Y+ G I +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 857 XXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 916
+ +I+ DD+ IQ++N ++D+ L+GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLIS-SSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL 1058
Query: 917 SHALNVLVSSGADSQLCVWSSDG 939
+S+L WS DG
Sbjct: 1059 L----------KNSRLLSWSFDG 1071
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
+D IA D ++Q++ E ++K H + AFS + + D ++ +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECV 992
+S E + T + Q + F H L+ + L +++ + EC
Sbjct: 691 NSMTGE-------LVHTYDEHSEQVNC-CHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 993 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1045
+S + H FS D +L+ +C D T+ ++ A + R IN +
Sbjct: 743 NTMFGHTNS--VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 824 EEAVPCFALSKNDSYVMSAS-GGKISLFNXXX-XXXXXXXXXXXXXXXXXXXHPQDNNII 881
E+ V C A S +D ++ + S K+ ++N + + ++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 941
A G D ++++++ E ++ + GH+ + FS +L S AD L +W +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 942 KQKN 945
++K+
Sbjct: 783 ERKS 786
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
+SP L VA S++ V++++ +V + H+ V+ + FS +T D
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVA---DCRGHLSWVHGVMFSPDGSSF--LTSSD 908
Query: 494 DKTIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543
D+TI++W+ K +F+ +E V +V H +Q I +G+
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLI-----NGRT-- 959
Query: 544 WLYDNLGSRVDY--EAPGRWCTT---MAYSADG-------------TRTYQGF--RKRSL 583
++DY EA C + Y A G R +Q K+++
Sbjct: 960 -------GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 643
+QF + +++ DD I+ W+ QL I G R K+ LL+ S
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNW---QLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 644 NDNGIKI 650
D +K+
Sbjct: 1070 -DGTVKV 1075
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
D T+KVW+ G K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSV 612
+ A+S D T LA GDD I+ W++ +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST----------------------LLATGDDNGEIRIWNVSNG 1165
Query: 613 QLL 615
+LL
Sbjct: 1166 ELL 1168
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 940
IA G ++ +I+I + + + H K + + F+ L+SS D+++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 941 EKQKNRFLQ 949
+ K FL+
Sbjct: 1039 QLDKCIFLR 1047
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 903 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 958
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 234
Query: 959 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQ 1014
+ D + + V + +L I++T K P + +A + +F+ S+
Sbjct: 235 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSE 290
Query: 1015 LVYAC-FLDATVCVFSAANLKLR 1036
+ A D TV ++ NLKL+
Sbjct: 291 FILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 482 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 534
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 249
Query: 535 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 580
A D K+ W N + VD C + SAD T R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 581 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 625
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 933 CVW 935
VW
Sbjct: 347 HVW 349
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
V V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 545
++ D+TIK+W+ K I EG E + C N I S + D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 592
N R + +T+A S DG+ G + + + K
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 593 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 621
NR+ L A + IK WD++S ++ + D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--PHHK 526
H G V+ +A S P+ LC + G D + +WD G K Y E + ++++C P+
Sbjct: 559 GHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPN-- 613
Query: 527 ENIQFIFSTALDGKIKAW------LYDNLGSRVDYEAPGR---------------WCTTM 565
++ A + IK W + ++L +VD +A +CT++
Sbjct: 614 ---RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKVIYCTSL 668
Query: 566 AYSADGTRTYQGF 578
+SADG+ + G+
Sbjct: 669 NWSADGSTLFSGY 681
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
D +++WD G F GH V SV +N Q I S + D IK W + LG
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGE-- 504
Query: 554 DYEAPGRWCT-TMAYSADGTRTYQGFRKRSLGVVQF--DTTKNRFLAAGDDFSIKFWDMD 610
C T++ +G R + + V+F +T + ++A D ++K W++
Sbjct: 505 --------CKYTISEGGEGHRDW-------VSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 611 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 659
+ +L +++ G ++ + + DG L A D + + ++G +L
Sbjct: 550 NCKLRSTLAGHTGYVST--VAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
D +++++N+ +++S L GH+ ++ +A S ++ S G D + +W
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 903 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 958
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 236
Query: 959 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1018
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 237 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 291
Query: 1019 CFL------DATVCVFSAANLKLR 1036
F+ D TV ++ NLKL+
Sbjct: 292 EFILATGSADKTVALWDLRNLKLK 315
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 482 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 534
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 251
Query: 535 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 580
A D K+ W N + VD C + SAD T R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 581 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 625
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 933 CVW 935
VW
Sbjct: 349 HVW 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 903 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 958
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 238
Query: 959 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1018
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 239 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 293
Query: 1019 CFL------DATVCVFSAANLKLR 1036
F+ D TV ++ NLKL+
Sbjct: 294 EFILATGSADKTVALWDLRNLKLK 317
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 482 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 534
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 253
Query: 535 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 580
A D K+ W N + VD C + SAD T R
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 581 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 625
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 933 CVW 935
VW
Sbjct: 351 HVW 353
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 415
++ R N SS ++ F+ Q +L G N G+I +WD+ C+
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 416 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 468
PG SV+ VI W+ +F A S + I+ EV HL
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 469 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 520
+ G+ + HP V T +D +I +WD N Q + +GH+ + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 562
+ H++ + S+ D + W ++ + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 876 QDNNIIAIGMDDSSIQIY--NVRVDEVKS--KLKGHSKRITGLAFSHAL-NVLVSSGADS 930
+N IIA +D+ S+++Y N + + S + HS + + F+ NVL S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 931 QLCVWSSDGWEKQKNRFLQIPTGRTP 956
++ +W N+ + P+ TP
Sbjct: 137 EIFIW-------DMNKCTESPSNYTP 155
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 874 HPQDNNIIAIGM---DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHA-LNVLVSSG 927
HP+++ +A +D SI I+++R +++ +GH K I L + H ++L+SSG
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 928 ADSQLCVWSSDGWEK 942
D+ + +W+ + E+
Sbjct: 283 RDNTVLLWNPESAEQ 297
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 522
H + H V+D+A S N I+ DKT+++WD G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 523 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 568
P +++ I S + +IK W L + S + E W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D +++++++R + GH + +AFS ++S+GA+ ++ +W+
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 606
L + + A+S DG LA GDD I+
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 607 WDMDSVQLLTS 617
W++ QLL S
Sbjct: 1161 WNVSDGQLLHS 1171
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 678
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 824 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 881
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 527
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1008 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1063
Query: 528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 585
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1064 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1106
Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1107 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1155
Query: 646 NGIKILATSDG 656
I+I SDG
Sbjct: 1156 GEIRIWNVSDG 1166
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 786
Query: 554 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 787 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 840
Query: 598 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
A + ++ W++DS L D G L + F+
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 898
Query: 634 KDGCLLAVSTNDNGIKILAT 653
DG +++D I++ T
Sbjct: 899 PDGSSFLTASDDQTIRVWET 918
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 987
S TG+ + Q F H L+ ++ L +++
Sbjct: 692 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1045
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 739 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 940
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 941 EKQKNRFLQ 949
+ FLQ
Sbjct: 1040 QTGDYVFLQ 1048
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 606
L + + A+S DG LA GDD I+
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 607 WDMDSVQLLTS 617
W++ QLL S
Sbjct: 1154 WNVSDGQLLHS 1164
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 671
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 824 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 881
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 527
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1001 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1056
Query: 528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 585
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1057 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1099
Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1100 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1148
Query: 646 NGIKILATSDG 656
I+I SDG
Sbjct: 1149 GEIRIWNVSDG 1159
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 779
Query: 554 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 833
Query: 598 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
A + ++ W++DS L D G L + F+
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 891
Query: 634 KDGCLLAVSTNDNGIKILAT 653
DG +++D I++ T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 987
S TG+ + Q F H L+ ++ L +++
Sbjct: 685 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1045
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 732 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 940
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 941 EKQKNRFLQ 949
+ FLQ
Sbjct: 1033 QTGDYVFLQ 1041
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 933 CVW 935
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 488 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 541 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 586
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 587 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 625
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 525
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRW 89
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 494
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 495 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 541
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 933 CVW 935
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 488 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 541 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 586
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 587 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 625
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 513 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570
GH APV + CPH N I S + D + W + G + P
Sbjct: 79 GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 630
T +G KR V T +N L+AG D I WD+ + + ++ D +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 631 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680
+++DG L+ S D ++++ G + + R E ++P
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 926
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 927 GADSQLCVW 935
G D+ + VW
Sbjct: 151 GCDNVILVW 159
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 521
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 107/303 (35%), Gaps = 73/303 (24%)
Query: 403 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 462
RN VW+ A S + A D V V WS DGS V +V IY ++R
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 463 QHLEIDAHVG-----------GVNDIAFSH-----PNKQLCVI----------------- 489
A VG G A H N Q+ +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 490 ---TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAW 544
+ G+D +++WDA + ++ H A V +V CP + N+ +D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 545 LYDNLGSRVDYEAPGRWCTTMAYS--ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602
G+RV+ G T++ +S + + GF D
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF---------------------PDN 327
Query: 603 SIKFWDMDSVQLLTSIDADGGLPA-SPRIRFNK---DGCLLAVSTNDNGIKILATSDGIR 658
++ W S L +D +PA R+ ++ DG +L+ + +D +K DG
Sbjct: 328 NLSIWSYSSSGLTKQVD----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383
Query: 659 LLR 661
+ R
Sbjct: 384 VKR 386
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 525
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561
+ + S + DGK+ W +N GRW
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN----------GRW 91
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 494
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 23 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 495 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 541
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 127
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 481 HPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKENIQFIFSTALDG 539
HPN+Q V T G D + +WD G + + HEA ++ V H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 540 KIKAW 544
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 525
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 568
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRWSQIAVHA 96
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 494
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 495 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 541
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 525
+AH ++D + K++ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN----------GRW 89
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 494
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRMATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 495 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 541
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--DGKV 125
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 69/294 (23%)
Query: 390 GLWEVGSRERLVL-----RNFKVW--DLGACSMPL--QAALVKDPGVSVNRVI-WSPDGS 439
G+W R+ +++ R KVW + G C L + V+ + RV+ S D +
Sbjct: 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499
L +++ G + + HV V + + V++ D +KV
Sbjct: 221 L----------RVWDIETGQCLHVLM---GHVAAVRCVQYDGRR----VVSGAYDFMVKV 263
Query: 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQF----IFSTALDGKIKAWLYDNLGSRVDY 555
WD + +GH VYS +QF + S +LD I+ W D
Sbjct: 264 WDPETETCLHTLQGHTNRVYS--------LQFDGIHVVSGSLDTSIRVW---------DV 306
Query: 556 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQL 614
E + + T G + + G+ K+ L +G+ D ++K WD+ + Q
Sbjct: 307 E-----------TGNCIHTLTGHQSLTSGM----ELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 615 LTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFEN 665
L ++ + A ++FNK+ + S++D +K+ L T + IR L T E+
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
D +I+VWD G + GH++ + K+NI + S D +K W
Sbjct: 298 DTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNI--LVSGNADSTVKIW--------- 344
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-- 611
D + + +T QG K V KN + + DD ++K WD+ +
Sbjct: 345 DIK-----------TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
Query: 612 -VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
++ L ++++ G RIR + + AV + +
Sbjct: 394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 32/148 (21%)
Query: 485 QLC---VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 541
Q C +++ DD T+KVW A G GH V+S ++NI I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 542 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV---------------- 585
K W + + G T R G R +L V
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 586 -----VQFDTTKNRFLAAGDDFSIKFWD 608
VQ+D R ++ DF +K WD
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWD 265
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 940
+ G D+SI++++V L GH +G+ N+LVS ADS + + W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI-----W 344
Query: 941 EKQKNRFLQIPTGRTPTAQSDTRVQFHQD 969
+ + + LQ G + T +QF+++
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 878 NNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCV 934
+NI+ G DS+++I++++ + L+G H +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 935 W 935
W
Sbjct: 387 W 387
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----IDAHVGGVNDIAFSHPN 483
++ V W P SL V I++ + ++ I+ H V +A+S N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 484 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHKENIQFIFSTALDG 539
+ TC DK++ +W+ ++Y + + H V V H E + + S++ D
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 540 KIKAWL-YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598
++ W YD+ D+E C + +GT F K GV R +
Sbjct: 176 TVRIWKDYDD-----DWE-----CVAVLNGHEGTVWSSDFDKTE-GVF-------RLCSG 217
Query: 599 GDDFSIKFW 607
DD +++ W
Sbjct: 218 SDDSTVRVW 226
Score = 33.1 bits (74), Expect = 0.95, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 378 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437
+LL G+ + +W ++E R F++ DL A+++ V V WS D
Sbjct: 71 SLLAAGSFDSTVSIW---AKEESADRTFEM-DL--------LAIIEGHENEVKGVAWSND 118
Query: 438 GSLFGVAYSRHIVQIY-SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 496
G V I+ + G+E + H V + + HP++ L + DD T
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEALLASSSYDD-T 176
Query: 497 IKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 546
+++W + + + GHE V+S E + + S + D ++ W Y
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 875 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 926
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 927 GADSQLCVW 935
G D+ + VW
Sbjct: 151 GXDNVILVW 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 510 IFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 567
+ GH APV + PH N I S + D + W + G + P
Sbjct: 76 LVXGHTAPVLDIAWXPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 627
T +G KR V T +N L+AG D I WD+ + + ++ D
Sbjct: 124 ----VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 628 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680
+ +++DG L+ S D ++++ G + + R E ++P
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 521
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 528
H G ++ + F+ NK L ++ DD T+++W NG Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 529 IQFIFSTALDGKIKAW 544
+ S ++DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 723 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 782
RI E + K WKLT ++E +L +++ L +++ GN+I+ N
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133
Query: 783 LW 784
LW
Sbjct: 134 LW 135
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 31/168 (18%)
Query: 482 PNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAPVYSVCPHHKENIQFIFSTA 536
P+++ +IT D+T +WD T G + IF GH A V S+ + N S +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-SINSLNANMFISGS 225
Query: 537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596
D ++ W + ++ RTY G + + V+F RF
Sbjct: 226 CDTTVRLW-------------------DLRITSRAVRTYHG-HEGDINSVKFFPDGQRFG 265
Query: 597 AAGDDFSIKFWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLL 639
DD + + +DM + L + D LP + F+ G LL
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 525
+AH ++D + K+ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 568
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN----------GRWSQIAVHA 96
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 490 TCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
TC D+++K++D NG + I GHE PV+ V H + S + D K+ W +
Sbjct: 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89
Query: 548 NLGSRVDYEAPGR 560
N +E G
Sbjct: 90 NGTWEKSHEHAGH 102
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497
G+ S V+I+ G ++ ++ H G V +A++HP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 498 KVWDATNGA--KQYIFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
+W NG K + GH++ V SVC PH I S+ DG I S +
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--DGAI---------SLL 132
Query: 554 DYEAPGRW 561
Y G+W
Sbjct: 133 TYTGEGQW 140
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--P 523
++ H V+D+A S N ++ D ++++W+ NG QY F GH V SV P
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 524 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583
+++ I S D ++ W G T++ +G +
Sbjct: 120 DNRQ----IVSGGRDNALRVW-----------NVKGECMHTLS---------RGAHTDWV 155
Query: 584 GVVQFDTTKNR--FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 641
V+F + + ++ G D +K WD+ + +L+T D G + + DG L A
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--DLKGHTNYVTSVTVSPDGSLCAS 213
Query: 642 STNDNGIKILATSDGIRL 659
S D ++ + G L
Sbjct: 214 SDKDGVARLWDLTKGEAL 231
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939
D S++++N++ + + K GH+K + +AFS +VS G D+ L VW+ G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 432 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 491
V +SPD + +++++ G E L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 492 GDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521
G D +KVWD G +GH V SV
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D +I G D+ ++++++ + + LKGH+ +T + S ++ SS D +
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL-- 222
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
W+ K L P Q + F ++ E + IF+ + + +
Sbjct: 223 ---WDLTKGEALSEMAAGAPINQ----ICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 997 PRESSAP-----ITHATFSCDSQLVYACFLDATVCVFSAA 1031
P + +S D +Y+ + D + V+ +
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHH 525
GV +A S P + D+ ++VWD+ G ++ GH+ VYSV
Sbjct: 208 GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV--F 264
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
+ Q + S +LD +K W N ++ D + P S TY G + L V
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--------SGTCEVTYIGHKDFVLSV 316
Query: 586 VQFDTTKN--RFLAAGDDFSIKFWDMDS 611
TT+N L+ D + FWD S
Sbjct: 317 A---TTQNDEYILSGSKDRGVLFWDKKS 341
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 474 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 533
+ + FS K L T +D+ I++WD N I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 534 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593
S + D ++ W + C+ DG T V
Sbjct: 182 SGSGDRTVRIW-----------DLRTGQCSLTLSIEDGVTT-----------VAVSPGDG 219
Query: 594 RFLAAGD-DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNG 647
+++AAG D +++ WD ++ L+ +D++ G + + F +DG + + D
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 648 IKI 650
+K+
Sbjct: 280 VKL 282
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
D +A G +D I+I+++ ++ L+GH + I L + + + LVS D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW- 192
Query: 937 SDGWEKQKNRFLQIPTGRTPTAQS 960
D Q + L I G T A S
Sbjct: 193 -DLRTGQCSLTLSIEDGVTTVAVS 215
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 512 EGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 569
+ H+ ++SV + KEN + + + +LD +K W + + R+D + +S
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLD----------LQWSL 76
Query: 570 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTSIDADGGLPAS 627
+G LGVV D + +AA D I+ WD+++ + + SIDA G +
Sbjct: 77 EG---------HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDA 125
Query: 628 PRIRFNKDGCLLAVSTNDNGIKILATSDG 656
+ F+ D LA T+ + I G
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
F+T D L+D R D E M YS D + V F
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 290
Query: 590 TTKNRFLAAGDDFSIKFWD 608
+ LA DDF+ WD
Sbjct: 291 KSGRLLLAGYDDFNCNVWD 309
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 172
Query: 493 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612
+T+ G + + + F N F DD + + +D+ +
Sbjct: 231 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 613 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
Q L + D + + F+K G LL +D
Sbjct: 270 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 220 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 275 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CL 329
Query: 524 HHKENIQFIFSTALDGKIKAW 544
++ + + + D +K W
Sbjct: 330 GVTDDGMAVATGSWDSFLKIW 350
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 590 TTKNRFLAAGDDFSIKFWD 608
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 493 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 613 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 524 HHKENIQFIFSTALDGKIKAW 544
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 590 TTKNRFLAAGDDFSIKFWD 608
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 493 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 613 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 524 HHKENIQFIFSTALDGKIKAW 544
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 590 TTKNRFLAAGDDFSIKFWD 608
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 493 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 613 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 524 HHKENIQFIFSTALDGKIKAW 544
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 590 TTKNRFLAAGDDFSIKFWD 608
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 493 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 613 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 524 HHKENIQFIFSTALDGKIKAW 544
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 21/205 (10%)
Query: 403 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 462
R ++W S ++ L + +V +V WSP G+ A I+ D+
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFE 96
Query: 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522
++ H V +A++ P+ L + TC DK++ VW+ + E E SV
Sbjct: 97 CVTTLEGHENEVKSVAWA-PSGNL-LATCSRDKSVWVWE--------VDEEDEYECVSVL 146
Query: 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582
H ++++ + + + YD+ ++ E W T +G + +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDT-VKLYREEEDDWVCCA--------TLEG-HEST 196
Query: 583 LGVVQFDTTKNRFLAAGDDFSIKFW 607
+ + FD + R + DD +++ W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
V V+W P L A V++Y D V ++ H V +AF ++L
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSGQRL-- 209
Query: 489 ITCGDDKTIKVWDATNGAKQYI 510
+C DD+T+++W +QY+
Sbjct: 210 ASCSDDRTVRIW------RQYL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 614 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 526
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 586 VQFDTTKNRF-LAAGDD-FSIKF 606
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 614 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 526
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 586 VQFDTTKNRF-LAAGDD-FSIKF 606
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 614 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 526
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 586 VQFDTTKNRF-LAAGDD-FSIKF 606
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 614 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 526
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 586 VQFDTTKNRF-LAAGDD-FSIKF 606
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 129 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 614 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
I+AD L ASP DG L+A + D I +
Sbjct: 182 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 216
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 526
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 527 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 586 VQFDTTKNRF-LAAGDD-FSIKF 606
K + L+A D+ FS+ F
Sbjct: 217 WNLAAKKAMYTLSAQDEVFSLAF 239
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
W+ D + + + H V IY G V+ H E+ H G V I ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 494 DKTIKVW 500
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 876 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 929
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 930 SQLCVWSSDG 939
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553
DKT+++WD G F GH++ V SV K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVWTI------- 136
Query: 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 137 ----KGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 614 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIXL 222
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 526
VG +D+ +K+ I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 586 VQFDTTKNRF-LAAGDD-FSIKF 606
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAXYTLSAQDEVFSLAF 245
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
W+ D + + + H V IY G V+ H E+ H G V + ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 494 DKTIKVW 500
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 876 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 929
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 930 SQLCVWSSDG 939
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 407 VWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 464
VWD+ G C +QA + VN V + P G F ++Y EV +
Sbjct: 224 VWDMRSGQC---VQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521
+ ++ + G + + FS + L +D TI VWD G++ I GHE V ++
Sbjct: 279 SK-ESIIFGASSVDFSLSGRLL--FAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 537
A S N + ++T D T +WD +G F GH A V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 538 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV--VQFDTTKNRF 595
D K W D + + Q F V V++ + + F
Sbjct: 219 DKKAMVW---------DMRSG--------------QCVQAFETHESDVNSVRYYPSGDAF 255
Query: 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655
+ DD + + +D+ + + + + + + + F+ G LL ND I +
Sbjct: 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 656 GIRL 659
G R+
Sbjct: 316 GSRV 319
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 466 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 525 HKENIQFIFSTALDGKIKAW 544
+ + + S +LDG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 466 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 525 HKENIQFIFSTALDGKIKAW 544
+ + + S +LDG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 528
AH G VN + F+ L +T G D +++W+++NG + G VC + K+
Sbjct: 243 AHNGKVNGLCFTSDGLHL--LTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKG 294
Query: 529 IQFIFSTA 536
++F S
Sbjct: 295 LKFTVSCG 302
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 645
N+ A G F I WDM D ++LL +I ADG + A P + R K+ + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 646 NG 647
+G
Sbjct: 107 SG 108
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ WSS
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWSS 364
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 474 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-SVCPHHKENIQFI 532
V D+ FS P+ VIT G D+ I +D +G E + PV + + Q
Sbjct: 209 VRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 533 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592
+ D I+ W TT T Q + +GVV T
Sbjct: 268 ATVGADATIRVWD----------------VTTSKCVQKWTLDKQQLGNQQVGVVA--TGN 309
Query: 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 644
R ++ D ++ F+++ ++L +I L +P I + DG ++ S++
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 874 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
HP+ ++ A G + ++ + N++ + HS+ ITGLA+S H+ L S D +
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294
Query: 933 CVWSSD 938
V +D
Sbjct: 295 AVLDAD 300
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438
L+ G+ D+ WEV + + + + + V D V WS DG
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPK----------AQQMHTGPVLD-------VCWSDDG 98
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
S A +++ Q ++I H V I + CV+T DKT+K
Sbjct: 99 SKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154
Query: 499 VWD 501
WD
Sbjct: 155 FWD 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 874 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 932
HPQ + + G ++ ++ + + + HS+ +TGL FS H++ L S D L
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282
Query: 933 CV 934
V
Sbjct: 283 AV 284
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGGITSFP 26
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 467 IDAHVGGVNDIAFSHPNKQLCV--------ITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518
+D H G V H + C+ ++CG+D+T+++W NG+ + + +
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269
Query: 519 YSV 521
+SV
Sbjct: 270 WSV 272
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 403 RNFKVWDLGACSMPLQA--ALVKDPGV---SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 457
+ KVW G+ LQA A V D V S N+ + + + + +++ +S
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183
Query: 458 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517
D VR H+ V+D F I+C +D IK+ D G +EGHE+
Sbjct: 184 NDVVR-------HLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 518 VYSV 521
VY +
Sbjct: 228 VYCI 231
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 61 DSTGKCGPPPPIDNGDITSFP 81
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 645
N+ A G F I W+M D ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 646 NG 647
+G
Sbjct: 103 SG 104
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 593 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 645
N+ A G F I W +MD ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 646 NG 647
+G
Sbjct: 103 SG 104
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 628
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 82
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 628
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 628
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALP 81
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 628
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 80
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 593 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 628
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
+A+GM+ S++++ +V + K +L H + L F++ VS+G D+ L W
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 880 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 219
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 880 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 208
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1088 GKWGVPPPVDNGSTSSMP 1105
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1088 GKWGVPPPVDNGSTSSMP 1105
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region Of
Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1088 GKWGVPPPVDNGSTSSMP 1105
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ W
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1088 GKWGVPPPVDNGSTSSMP 1105
GK G PPP+DNG +S P
Sbjct: 1 GKCGPPPPIDNGDITSFP 18
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 183 DSTGKCGPPPPIDNGDITSFP 203
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1085 ESEGKWGVPPPVDNGSTSSMP 1105
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 877 DNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
++ I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 936 SS 937
S
Sbjct: 178 PS 179
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 876 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,270,483
Number of Sequences: 62578
Number of extensions: 1396709
Number of successful extensions: 3766
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 613
length of query: 1120
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1011
effective length of database: 8,152,335
effective search space: 8242010685
effective search space used: 8242010685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)