Query 001224
Match_columns 1120
No_of_seqs 824 out of 4608
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 19:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 4.4E-67 9.6E-72 522.7 38.0 490 5-896 17-513 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.1E-60 4.6E-65 459.4 31.7 490 5-736 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 4.2E-56 9E-61 477.2 46.4 573 370-1086 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 9.5E-56 2.1E-60 474.4 44.6 546 363-1032 61-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 6E-50 1.3E-54 413.0 58.2 575 369-1084 23-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 1.2E-49 2.7E-54 427.1 60.8 578 353-1086 42-711 (893)
7 KOG0271 Notchless-like WD40 re 100.0 3.3E-53 7.1E-58 419.6 26.6 375 347-936 98-479 (480)
8 KOG0306 WD40-repeat-containing 100.0 2.1E-48 4.6E-53 417.4 50.7 609 366-1085 23-665 (888)
9 KOG0318 WD40 repeat stress pro 100.0 2.9E-47 6.3E-52 393.1 57.2 537 360-1031 55-602 (603)
10 KOG0291 WD40-repeat-containing 100.0 5.6E-46 1.2E-50 399.1 59.9 539 369-1087 19-615 (893)
11 KOG0306 WD40-repeat-containing 100.0 4.6E-47 1E-51 407.2 48.7 513 363-1036 64-669 (888)
12 KOG0271 Notchless-like WD40 re 100.0 6.1E-50 1.3E-54 396.4 24.1 364 421-1029 110-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 9.1E-45 2E-49 385.7 40.7 595 369-1086 42-715 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 5.8E-40 1.3E-44 349.2 41.0 556 358-1034 71-716 (1080)
15 KOG1539 WD repeat protein [Gen 100.0 6.1E-38 1.3E-42 341.7 54.6 584 370-1083 39-647 (910)
16 KOG0273 Beta-transducin family 100.0 3.7E-39 7.9E-44 329.2 34.6 353 353-938 167-523 (524)
17 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-40 4E-45 334.5 22.3 285 469-936 173-458 (459)
18 KOG0263 Transcription initiati 100.0 3.3E-39 7.2E-44 352.2 31.5 276 350-656 363-651 (707)
19 KOG0272 U4/U6 small nuclear ri 100.0 8.8E-40 1.9E-44 329.6 23.9 284 361-785 172-458 (459)
20 KOG0286 G-protein beta subunit 100.0 3.2E-38 7E-43 303.2 32.0 290 360-785 51-343 (343)
21 KOG0276 Vesicle coat complex C 100.0 1.2E-36 2.6E-41 320.3 44.4 465 362-1029 11-488 (794)
22 KOG1539 WD repeat protein [Gen 100.0 1.8E-35 3.8E-40 322.5 49.7 553 356-1030 67-647 (910)
23 KOG1063 RNA polymerase II elon 100.0 1.1E-35 2.3E-40 317.7 46.3 601 369-1084 19-763 (764)
24 KOG1063 RNA polymerase II elon 100.0 1.9E-35 4.1E-40 315.8 44.7 604 357-1031 47-763 (764)
25 KOG0279 G protein beta subunit 100.0 2.8E-36 6E-41 288.4 32.6 256 361-662 12-269 (315)
26 KOG0276 Vesicle coat complex C 100.0 8.3E-35 1.8E-39 306.5 45.3 471 422-1085 9-491 (794)
27 KOG0286 G-protein beta subunit 100.0 2.1E-35 4.5E-40 283.9 32.5 287 463-936 47-343 (343)
28 KOG0279 G protein beta subunit 100.0 1.5E-35 3.3E-40 283.3 31.1 296 754-1085 12-314 (315)
29 KOG0296 Angio-associated migra 100.0 4.5E-35 9.7E-40 290.4 35.0 339 421-938 59-398 (399)
30 KOG0292 Vesicle coat complex C 100.0 7.1E-34 1.5E-38 310.5 46.2 489 363-1029 8-516 (1202)
31 KOG2106 Uncharacterized conser 100.0 1.7E-33 3.7E-38 289.6 42.7 511 356-1083 96-625 (626)
32 KOG0295 WD40 repeat-containing 100.0 4E-35 8.7E-40 290.4 25.4 273 357-664 101-373 (406)
33 KOG0315 G-protein beta subunit 100.0 2.7E-34 5.9E-39 269.6 29.3 229 378-655 11-246 (311)
34 KOG0315 G-protein beta subunit 100.0 2.8E-33 6.1E-38 262.8 31.0 295 486-917 11-309 (311)
35 KOG0295 WD40 repeat-containing 100.0 2.1E-34 4.6E-39 285.3 24.3 301 421-937 103-405 (406)
36 KOG0296 Angio-associated migra 100.0 5.8E-33 1.3E-37 275.4 33.5 331 358-896 58-398 (399)
37 KOG0265 U5 snRNP-specific prot 100.0 3.1E-33 6.6E-38 270.3 28.5 297 418-894 39-336 (338)
38 KOG0273 Beta-transducin family 100.0 3.7E-33 7.9E-38 285.5 30.5 279 756-1084 234-523 (524)
39 KOG2048 WD40 repeat protein [G 100.0 2.2E-30 4.8E-35 277.3 51.6 510 426-1092 25-557 (691)
40 KOG0285 Pleiotropic regulator 100.0 2.7E-33 5.8E-38 276.0 26.0 251 354-656 140-391 (460)
41 KOG0292 Vesicle coat complex C 100.0 4.5E-31 9.7E-36 288.7 44.8 449 422-1040 5-488 (1202)
42 KOG2048 WD40 repeat protein [G 100.0 1.8E-29 4E-34 270.3 54.9 547 364-1084 25-601 (691)
43 KOG0265 U5 snRNP-specific prot 100.0 9.1E-33 2E-37 267.0 26.7 253 357-656 40-298 (338)
44 KOG0263 Transcription initiati 100.0 1.1E-33 2.4E-38 309.2 22.9 274 756-1087 377-652 (707)
45 KOG0645 WD40 repeat protein [G 100.0 7.1E-32 1.5E-36 257.1 32.1 247 358-654 8-261 (312)
46 KOG0284 Polyadenylation factor 100.0 1.4E-33 3E-38 283.4 19.0 284 363-787 95-380 (464)
47 KOG0285 Pleiotropic regulator 100.0 2.8E-32 6.1E-37 268.9 25.8 294 421-854 146-440 (460)
48 KOG0645 WD40 repeat protein [G 100.0 5.3E-31 1.1E-35 251.1 30.2 293 754-1084 11-311 (312)
49 KOG2106 Uncharacterized conser 100.0 8.7E-30 1.9E-34 262.4 39.6 433 356-937 145-625 (626)
50 KOG0282 mRNA splicing factor [ 100.0 2.5E-32 5.4E-37 280.9 20.4 291 420-894 208-503 (503)
51 KOG0284 Polyadenylation factor 100.0 3.9E-32 8.5E-37 273.0 20.8 285 756-1087 95-383 (464)
52 KOG0266 WD40 repeat-containing 100.0 6.3E-31 1.4E-35 300.6 32.4 289 756-1084 158-454 (456)
53 KOG0316 Conserved WD40 repeat- 100.0 3.3E-31 7.1E-36 246.7 24.1 251 354-656 6-259 (307)
54 KOG0266 WD40 repeat-containing 100.0 1.4E-30 3.1E-35 297.7 33.5 257 363-666 158-420 (456)
55 KOG0293 WD40 repeat-containing 100.0 5E-31 1.1E-35 264.8 23.8 288 466-939 219-514 (519)
56 KOG0316 Conserved WD40 repeat- 100.0 9.5E-30 2.1E-34 237.0 27.0 288 418-853 9-299 (307)
57 KOG1445 Tumor-specific antigen 100.0 6.5E-29 1.4E-33 261.7 36.3 248 774-1049 598-862 (1012)
58 KOG0281 Beta-TrCP (transducin 100.0 1.3E-31 2.7E-36 262.8 14.9 232 363-656 196-430 (499)
59 KOG0282 mRNA splicing factor [ 100.0 1.2E-30 2.5E-35 268.6 22.0 291 505-936 204-503 (503)
60 KOG0278 Serine/threonine kinas 100.0 1.8E-30 3.9E-35 243.8 18.4 287 421-941 9-300 (334)
61 KOG0281 Beta-TrCP (transducin 100.0 1E-30 2.2E-35 256.5 16.5 274 593-1036 208-482 (499)
62 cd00200 WD40 WD40 domain, foun 100.0 2.9E-28 6.2E-33 267.3 36.4 285 466-936 4-289 (289)
63 cd00200 WD40 WD40 domain, foun 100.0 2.5E-28 5.4E-33 267.8 35.6 246 361-656 6-251 (289)
64 KOG0643 Translation initiation 100.0 2.7E-29 5.9E-34 238.6 23.2 295 421-939 5-318 (327)
65 KOG0275 Conserved WD40 repeat- 100.0 6.3E-30 1.4E-34 248.4 18.0 292 756-1083 212-508 (508)
66 PLN00181 protein SPA1-RELATED; 100.0 7.6E-28 1.6E-32 297.8 40.9 253 360-656 479-740 (793)
67 PLN00181 protein SPA1-RELATED; 100.0 5E-28 1.1E-32 299.3 36.8 321 729-1083 457-792 (793)
68 KOG0641 WD40 repeat protein [G 100.0 4.1E-27 8.8E-32 217.6 30.7 275 356-655 24-304 (350)
69 KOG0640 mRNA cleavage stimulat 100.0 9.6E-28 2.1E-32 232.4 27.1 276 354-656 102-385 (430)
70 KOG0278 Serine/threonine kinas 100.0 6.2E-29 1.3E-33 233.6 17.0 299 754-1101 11-316 (334)
71 KOG1407 WD40 repeat protein [F 100.0 2.6E-27 5.6E-32 224.7 25.6 277 466-930 15-294 (313)
72 KOG0313 Microtubule binding pr 100.0 2.4E-27 5.2E-32 236.8 25.7 251 354-656 95-378 (423)
73 KOG1445 Tumor-specific antigen 100.0 4.3E-26 9.3E-31 240.7 36.0 631 421-1096 74-856 (1012)
74 KOG0310 Conserved WD40 repeat- 100.0 6.9E-27 1.5E-31 241.6 27.9 286 756-1087 25-312 (487)
75 KOG0299 U3 snoRNP-associated p 100.0 5.9E-27 1.3E-31 240.1 26.0 266 357-658 135-414 (479)
76 KOG0288 WD40 repeat protein Ti 100.0 4.3E-28 9.2E-33 244.6 17.2 257 350-656 160-419 (459)
77 KOG0313 Microtubule binding pr 100.0 1.1E-26 2.5E-31 231.9 25.1 301 424-895 103-417 (423)
78 KOG0643 Translation initiation 100.0 2.8E-26 6E-31 218.3 26.4 236 358-645 4-252 (327)
79 KOG0283 WD40 repeat-containing 100.0 3.9E-27 8.6E-32 260.7 24.0 265 362-656 265-578 (712)
80 KOG0283 WD40 repeat-containing 100.0 8.7E-27 1.9E-31 258.0 26.0 275 755-1034 265-579 (712)
81 KOG0973 Histone transcription 100.0 8.1E-27 1.8E-31 264.7 26.3 304 756-1087 12-358 (942)
82 KOG1407 WD40 repeat protein [F 100.0 4.5E-26 9.8E-31 216.3 26.2 278 421-887 15-293 (313)
83 KOG0310 Conserved WD40 repeat- 100.0 2.2E-26 4.7E-31 238.0 26.1 247 362-656 24-270 (487)
84 KOG0277 Peroxisomal targeting 100.0 1.7E-26 3.6E-31 218.2 22.2 286 368-736 12-307 (311)
85 KOG0274 Cdc4 and related F-box 100.0 4.6E-26 9.9E-31 257.9 29.9 237 362-656 206-443 (537)
86 KOG0772 Uncharacterized conser 99.9 3.2E-26 7E-31 236.8 25.5 300 754-1087 164-491 (641)
87 KOG0277 Peroxisomal targeting 99.9 1E-26 2.2E-31 219.7 19.7 253 356-653 52-308 (311)
88 KOG0640 mRNA cleavage stimulat 99.9 1.2E-26 2.7E-31 224.7 20.6 245 756-1030 171-425 (430)
89 KOG0647 mRNA export protein (c 99.9 1.5E-25 3.2E-30 217.4 27.0 247 363-655 26-282 (347)
90 KOG0274 Cdc4 and related F-box 99.9 1.7E-25 3.7E-30 253.2 32.1 287 424-908 206-494 (537)
91 PTZ00421 coronin; Provisional 99.9 5.5E-25 1.2E-29 249.5 35.5 298 757-1085 20-332 (493)
92 KOG1446 Histone H3 (Lys4) meth 99.9 6.4E-25 1.4E-29 215.7 30.9 246 823-1087 13-265 (311)
93 KOG0973 Histone transcription 99.9 4.2E-26 9.1E-31 259.0 25.8 280 363-656 12-357 (942)
94 KOG0772 Uncharacterized conser 99.9 9.4E-26 2E-30 233.4 25.6 223 422-663 163-403 (641)
95 KOG0288 WD40 repeat protein Ti 99.9 6.5E-27 1.4E-31 236.1 16.4 286 421-893 170-458 (459)
96 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-24 4.1E-29 212.4 33.0 289 756-1087 13-306 (311)
97 KOG2096 WD40 repeat protein [G 99.9 4.4E-25 9.5E-30 215.0 27.6 307 617-1029 81-400 (420)
98 PTZ00421 coronin; Provisional 99.9 9.2E-25 2E-29 247.7 33.8 263 363-656 19-292 (493)
99 KOG2096 WD40 repeat protein [G 99.9 1.3E-24 2.7E-29 211.9 28.7 317 420-894 80-400 (420)
100 KOG0308 Conserved WD40 repeat- 99.9 6.9E-26 1.5E-30 241.3 21.0 247 369-656 29-287 (735)
101 KOG0300 WD40 repeat-containing 99.9 3.5E-25 7.5E-30 215.1 23.1 245 363-656 147-430 (481)
102 KOG0305 Anaphase promoting com 99.9 5.2E-25 1.1E-29 238.4 27.1 273 369-786 182-460 (484)
103 KOG0294 WD40 repeat-containing 99.9 1.4E-24 3.1E-29 211.9 26.5 240 821-1086 40-283 (362)
104 KOG0264 Nucleosome remodeling 99.9 3.2E-25 6.9E-30 228.0 22.2 269 356-655 116-405 (422)
105 KOG0305 Anaphase promoting com 99.9 5.5E-25 1.2E-29 238.3 24.7 259 347-656 199-463 (484)
106 KOG0308 Conserved WD40 repeat- 99.9 1E-25 2.2E-30 240.0 18.2 366 431-1039 29-401 (735)
107 KOG0268 Sof1-like rRNA process 99.9 1E-25 2.2E-30 223.5 17.0 285 422-900 62-349 (433)
108 PTZ00420 coronin; Provisional 99.9 6.7E-24 1.5E-28 240.9 33.4 235 383-656 50-295 (568)
109 KOG0301 Phospholipase A2-activ 99.9 1.2E-24 2.6E-29 233.8 25.3 241 357-654 6-249 (745)
110 KOG0289 mRNA splicing factor [ 99.9 3.5E-24 7.5E-29 217.6 27.3 240 756-1030 260-505 (506)
111 KOG0647 mRNA export protein (c 99.9 3.3E-24 7.2E-29 208.1 25.4 207 422-656 23-230 (347)
112 KOG0299 U3 snoRNP-associated p 99.9 2.2E-24 4.7E-29 221.3 24.6 293 421-843 137-444 (479)
113 KOG0289 mRNA splicing factor [ 99.9 5.4E-24 1.2E-28 216.2 26.4 282 472-937 220-505 (506)
114 KOG1963 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 222.8 41.3 526 423-1091 13-590 (792)
115 KOG0268 Sof1-like rRNA process 99.9 4.1E-25 8.9E-30 219.2 15.6 285 466-942 61-349 (433)
116 KOG0294 WD40 repeat-containing 99.9 2.2E-23 4.7E-28 203.6 27.1 272 487-945 3-288 (362)
117 KOG0301 Phospholipase A2-activ 99.9 4.8E-24 1E-28 229.2 24.2 274 754-1084 11-288 (745)
118 PTZ00420 coronin; Provisional 99.9 3.1E-23 6.7E-28 235.6 31.9 243 357-636 67-318 (568)
119 KOG0300 WD40 repeat-containing 99.9 5E-24 1.1E-28 207.1 20.6 201 823-1033 271-478 (481)
120 KOG0641 WD40 repeat protein [G 99.9 4E-22 8.6E-27 184.7 32.0 247 755-1031 87-349 (350)
121 KOG1332 Vesicle coat complex C 99.9 3.7E-24 8E-29 201.3 18.6 256 363-654 10-286 (299)
122 KOG0639 Transducin-like enhanc 99.9 1.6E-23 3.4E-28 215.9 21.5 282 756-1083 418-703 (705)
123 KOG1963 WD40 repeat protein [G 99.9 5.1E-21 1.1E-25 213.0 39.5 510 370-993 22-589 (792)
124 KOG1036 Mitotic spindle checkp 99.9 7.1E-22 1.5E-26 193.2 28.5 242 363-656 12-264 (323)
125 KOG1274 WD40 repeat protein [G 99.9 3.3E-22 7.2E-27 222.3 28.7 251 755-1032 11-263 (933)
126 KOG1332 Vesicle coat complex C 99.9 5.1E-23 1.1E-27 193.7 18.9 222 421-654 6-241 (299)
127 KOG1274 WD40 repeat protein [G 99.9 1.2E-19 2.5E-24 202.2 48.0 253 361-655 10-263 (933)
128 KOG0646 WD40 repeat protein [G 99.9 2.2E-22 4.7E-27 207.3 24.5 206 823-1040 80-316 (476)
129 KOG4283 Transcription-coupled 99.9 6.4E-22 1.4E-26 191.0 26.1 237 362-658 41-280 (397)
130 KOG0646 WD40 repeat protein [G 99.9 2.8E-22 6E-27 206.5 24.9 217 426-670 81-322 (476)
131 KOG0639 Transducin-like enhanc 99.9 8.7E-23 1.9E-27 210.5 19.1 255 356-656 411-665 (705)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.9E-21 1.7E-25 210.0 36.6 205 829-1040 77-288 (300)
133 KOG2055 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 200.5 26.2 248 757-1031 257-512 (514)
134 KOG1273 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 189.0 26.2 295 429-897 26-323 (405)
135 KOG1036 Mitotic spindle checkp 99.9 5.2E-21 1.1E-25 187.2 28.1 283 424-886 11-294 (323)
136 KOG0321 WD40 repeat-containing 99.9 3.2E-22 6.9E-27 213.1 20.8 434 431-1032 54-532 (720)
137 KOG0264 Nucleosome remodeling 99.9 5.1E-22 1.1E-26 204.6 20.9 233 356-610 169-404 (422)
138 KOG1538 Uncharacterized conser 99.9 9.2E-21 2E-25 201.8 30.8 451 366-982 14-519 (1081)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.8E-20 1E-24 203.6 36.7 294 438-918 1-300 (300)
140 KOG0650 WD40 repeat nucleolar 99.9 4.5E-21 9.9E-26 202.6 25.4 313 464-935 393-732 (733)
141 KOG4283 Transcription-coupled 99.9 5.7E-21 1.2E-25 184.5 23.8 246 754-1030 98-364 (397)
142 KOG1538 Uncharacterized conser 99.9 4.4E-20 9.5E-25 196.7 31.0 174 428-636 14-188 (1081)
143 KOG0267 Microtubule severing p 99.9 8.2E-23 1.8E-27 220.5 10.1 232 823-1076 27-260 (825)
144 KOG2055 WD40 repeat protein [G 99.9 1.4E-20 3E-25 193.4 25.4 292 471-896 213-512 (514)
145 KOG1273 WD40 repeat protein [G 99.9 4.8E-20 1E-24 180.0 26.6 275 353-656 13-324 (405)
146 KOG0267 Microtubule severing p 99.9 1.9E-22 4.2E-27 217.7 10.8 235 361-645 25-259 (825)
147 KOG2445 Nuclear pore complex c 99.9 7.7E-20 1.7E-24 178.3 27.5 268 468-939 10-319 (361)
148 KOG0321 WD40 repeat-containing 99.9 2.3E-20 5E-25 199.1 22.6 290 770-1087 65-394 (720)
149 KOG4328 WD40 protein [Function 99.9 3.5E-20 7.6E-25 190.3 22.6 254 363-656 185-452 (498)
150 KOG0650 WD40 repeat nucleolar 99.9 6.5E-20 1.4E-24 194.0 24.9 323 573-1028 394-732 (733)
151 KOG0302 Ribosome Assembly prot 99.9 4.2E-20 9.1E-25 184.9 22.2 269 354-651 141-435 (440)
152 KOG0270 WD40 repeat-containing 99.9 1.9E-20 4.2E-25 191.8 19.9 268 366-663 175-458 (463)
153 KOG0269 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 205.0 18.7 283 719-1032 50-341 (839)
154 KOG0269 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 207.8 15.8 248 365-656 88-342 (839)
155 KOG2445 Nuclear pore complex c 99.8 4.4E-19 9.4E-24 173.2 25.6 259 362-654 11-318 (361)
156 KOG1009 Chromatin assembly com 99.8 4E-19 8.7E-24 180.1 24.9 172 363-548 12-196 (434)
157 KOG1034 Transcriptional repres 99.8 1.2E-19 2.6E-24 178.5 20.0 300 754-1084 35-383 (385)
158 COG2319 FOG: WD40 repeat [Gene 99.8 5.1E-17 1.1E-21 190.3 46.2 371 359-939 60-443 (466)
159 KOG1034 Transcriptional repres 99.8 1.4E-19 3E-24 178.1 18.6 258 363-654 88-383 (385)
160 KOG4378 Nuclear protein COP1 [ 99.8 4.8E-19 1.1E-23 183.0 21.7 293 723-1064 5-304 (673)
161 KOG0302 Ribosome Assembly prot 99.8 3.4E-19 7.4E-24 178.5 18.9 175 355-549 201-380 (440)
162 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-16 4.9E-21 184.8 46.5 368 467-1032 61-443 (466)
163 KOG4328 WD40 protein [Function 99.8 1.3E-18 2.9E-23 178.8 23.5 315 503-896 174-495 (498)
164 KOG0270 WD40 repeat-containing 99.8 5.4E-19 1.2E-23 181.2 19.6 196 437-656 191-406 (463)
165 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-18 3.5E-23 179.1 21.7 211 767-1013 89-305 (673)
166 KOG1310 WD40 repeat protein [G 99.8 4.6E-18 1E-22 177.9 23.4 168 465-654 44-231 (758)
167 KOG1524 WD40 repeat-containing 99.8 1.4E-16 3E-21 166.6 32.2 506 362-1087 12-526 (737)
168 KOG0307 Vesicle coat complex C 99.8 1.4E-18 3E-23 199.0 15.9 258 360-656 60-329 (1049)
169 KOG2919 Guanine nucleotide-bin 99.8 8.8E-17 1.9E-21 158.1 25.1 228 767-1022 121-361 (406)
170 KOG1009 Chromatin assembly com 99.8 8.8E-17 1.9E-21 163.3 25.4 301 757-1087 13-375 (434)
171 KOG0322 G-protein beta subunit 99.8 2E-17 4.4E-22 158.0 19.1 307 507-937 6-322 (323)
172 KOG4497 Uncharacterized conser 99.8 2.6E-16 5.5E-21 155.0 27.1 385 431-931 13-425 (447)
173 KOG2919 Guanine nucleotide-bin 99.8 5.4E-17 1.2E-21 159.5 21.6 273 474-929 52-361 (406)
174 KOG0303 Actin-binding protein 99.8 3.2E-17 7E-22 165.4 20.2 216 419-663 74-303 (472)
175 KOG1912 WD40 repeat protein [G 99.8 5.7E-16 1.2E-20 169.0 30.7 575 363-1087 14-659 (1062)
176 KOG0303 Actin-binding protein 99.8 7.9E-17 1.7E-21 162.6 20.9 244 353-635 70-320 (472)
177 KOG0649 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 144.1 26.2 288 759-1082 12-314 (325)
178 KOG4497 Uncharacterized conser 99.7 2E-16 4.3E-21 155.7 21.4 345 585-1078 13-426 (447)
179 PRK11028 6-phosphogluconolacto 99.7 1.6E-15 3.5E-20 168.7 31.8 279 723-1035 5-310 (330)
180 KOG1912 WD40 repeat protein [G 99.7 1.8E-15 4E-20 165.1 30.4 604 348-1035 38-745 (1062)
181 KOG0322 G-protein beta subunit 99.7 7.5E-17 1.6E-21 154.2 16.5 308 463-895 6-322 (323)
182 KOG4227 WD40 repeat protein [G 99.7 5.5E-16 1.2E-20 155.7 23.4 170 466-658 51-229 (609)
183 KOG1334 WD40 repeat protein [G 99.7 3.4E-17 7.4E-22 169.8 14.6 322 465-898 136-468 (559)
184 KOG0307 Vesicle coat complex C 99.7 3.7E-17 8E-22 187.6 16.3 278 727-1034 36-330 (1049)
185 KOG1007 WD repeat protein TSSC 99.7 4.4E-16 9.5E-21 150.8 20.6 259 360-654 59-361 (370)
186 KOG0642 Cell-cycle nuclear pro 99.7 6.5E-17 1.4E-21 171.2 16.2 229 421-656 289-563 (577)
187 PRK11028 6-phosphogluconolacto 99.7 7.9E-15 1.7E-19 163.1 33.4 251 824-1090 34-310 (330)
188 KOG1188 WD40 repeat protein [G 99.7 3.2E-16 7E-21 155.7 19.1 151 487-656 42-198 (376)
189 KOG1188 WD40 repeat protein [G 99.7 3.1E-16 6.8E-21 155.8 18.8 289 439-786 41-345 (376)
190 KOG1587 Cytoplasmic dynein int 99.7 8.5E-16 1.8E-20 172.7 24.4 264 355-656 233-518 (555)
191 KOG0644 Uncharacterized conser 99.7 2.9E-17 6.3E-22 180.3 11.9 282 465-941 184-471 (1113)
192 KOG1517 Guanine nucleotide bin 99.7 1.2E-15 2.7E-20 172.0 24.8 305 471-898 1064-1383(1387)
193 KOG4227 WD40 repeat protein [G 99.7 8.5E-16 1.9E-20 154.3 20.9 306 421-786 51-386 (609)
194 KOG2110 Uncharacterized conser 99.7 7E-15 1.5E-19 148.1 27.3 241 824-1087 5-251 (391)
195 KOG0644 Uncharacterized conser 99.7 4.4E-17 9.5E-22 178.9 11.2 232 421-665 185-437 (1113)
196 KOG0642 Cell-cycle nuclear pro 99.7 4E-16 8.7E-21 165.3 16.7 277 466-909 289-574 (577)
197 KOG0290 Conserved WD40 repeat- 99.7 1.4E-14 3.1E-19 140.7 25.3 245 823-1081 95-362 (364)
198 KOG0290 Conserved WD40 repeat- 99.7 3.1E-15 6.7E-20 145.2 20.2 253 360-650 92-361 (364)
199 KOG1007 WD repeat protein TSSC 99.7 1.6E-15 3.5E-20 146.9 18.0 228 363-610 122-361 (370)
200 KOG1517 Guanine nucleotide bin 99.7 7.6E-15 1.6E-19 165.8 25.7 259 759-1034 1111-1384(1387)
201 KOG0974 WD-repeat protein WDR6 99.7 1E-12 2.3E-17 150.0 41.9 150 370-548 139-289 (967)
202 KOG0649 WD40 repeat protein [G 99.7 8.6E-15 1.9E-19 138.4 20.8 253 366-654 12-274 (325)
203 KOG1334 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 156.6 17.3 275 360-665 138-434 (559)
204 KOG0771 Prolactin regulatory e 99.7 1.3E-15 2.8E-20 156.5 15.2 198 828-1032 148-355 (398)
205 KOG1240 Protein kinase contain 99.6 4.7E-14 1E-18 162.3 27.5 211 422-656 1044-1275(1431)
206 KOG0771 Prolactin regulatory e 99.6 3E-15 6.5E-20 153.8 15.2 200 869-1086 148-356 (398)
207 KOG1524 WD40 repeat-containing 99.6 1E-14 2.3E-19 152.7 18.9 206 720-982 75-281 (737)
208 KOG2110 Uncharacterized conser 99.6 5.7E-13 1.2E-17 134.5 30.2 303 757-1102 5-350 (391)
209 KOG1523 Actin-related protein 99.6 4.6E-14 9.9E-19 139.4 21.9 252 364-642 10-267 (361)
210 KOG1240 Protein kinase contain 99.6 1.1E-13 2.4E-18 159.3 26.7 269 356-656 1040-1336(1431)
211 COG4946 Uncharacterized protei 99.6 3.5E-11 7.6E-16 125.0 41.3 144 756-927 358-507 (668)
212 KOG0974 WD-repeat protein WDR6 99.6 7.3E-12 1.6E-16 143.2 39.6 195 367-612 90-290 (967)
213 KOG1310 WD40 repeat protein [G 99.6 9.3E-15 2E-19 153.5 15.0 238 360-618 46-311 (758)
214 PF02239 Cytochrom_D1: Cytochr 99.6 5.1E-13 1.1E-17 147.2 29.6 325 531-996 8-356 (369)
215 PRK01742 tolB translocation pr 99.6 1.3E-13 2.9E-18 157.9 23.0 222 358-635 197-426 (429)
216 PRK01742 tolB translocation pr 99.6 4E-13 8.6E-18 154.0 26.2 224 386-667 183-415 (429)
217 KOG1587 Cytoplasmic dynein int 99.6 5.7E-13 1.2E-17 150.1 26.5 283 539-939 222-517 (555)
218 KOG1523 Actin-related protein 99.6 3.1E-13 6.8E-18 133.6 20.9 245 823-1085 9-279 (361)
219 KOG2111 Uncharacterized conser 99.6 8E-13 1.7E-17 130.8 23.2 240 825-1087 6-259 (346)
220 PF02239 Cytochrom_D1: Cytochr 99.6 2.1E-12 4.5E-17 142.4 29.3 322 486-944 7-353 (369)
221 KOG2139 WD40 repeat protein [G 99.5 2.3E-12 4.9E-17 129.4 24.9 290 721-1031 111-431 (445)
222 KOG2394 WD40 protein DMR-N9 [G 99.5 7.5E-13 1.6E-17 139.5 22.4 214 833-1087 182-455 (636)
223 KOG2041 WD40 repeat protein [G 99.5 9E-12 1.9E-16 135.2 31.1 545 363-1030 13-618 (1189)
224 KOG2139 WD40 repeat protein [G 99.5 3.5E-12 7.7E-17 128.0 25.5 286 756-1084 97-431 (445)
225 KOG2321 WD40 repeat protein [G 99.5 4.3E-12 9.4E-17 134.9 23.3 302 358-743 45-348 (703)
226 KOG1272 WD40-repeat-containing 99.5 1.7E-13 3.7E-18 141.8 12.2 282 758-1088 130-413 (545)
227 KOG2394 WD40 protein DMR-N9 [G 99.5 5.3E-13 1.2E-17 140.6 15.7 157 363-524 218-383 (636)
228 KOG2041 WD40 repeat protein [G 99.5 1.7E-10 3.6E-15 125.6 33.4 480 425-1040 13-541 (1189)
229 KOG2315 Predicted translation 99.4 2.1E-10 4.6E-15 122.6 31.8 254 802-1087 106-393 (566)
230 KOG1409 Uncharacterized conser 99.4 1.1E-11 2.3E-16 124.0 19.5 326 590-1032 34-395 (404)
231 KOG2321 WD40 repeat protein [G 99.4 1.3E-11 2.9E-16 131.3 21.2 281 709-1035 52-347 (703)
232 KOG2659 LisH motif-containing 99.4 1.4E-12 3.1E-17 125.6 12.6 168 4-183 25-205 (228)
233 KOG1354 Serine/threonine prote 99.4 4.1E-11 8.8E-16 119.7 23.2 183 471-656 25-246 (433)
234 KOG1272 WD40-repeat-containing 99.4 6.7E-13 1.5E-17 137.5 10.4 231 365-652 130-360 (545)
235 PRK03629 tolB translocation pr 99.4 4.3E-11 9.4E-16 136.7 26.2 222 358-634 192-427 (429)
236 KOG2111 Uncharacterized conser 99.4 4.9E-10 1.1E-14 111.4 29.5 238 366-656 7-258 (346)
237 PRK04922 tolB translocation pr 99.4 3.3E-11 7.1E-16 138.6 25.0 225 355-634 194-432 (433)
238 PF10282 Lactonase: Lactonase, 99.4 4.1E-10 8.9E-15 125.1 32.4 280 730-1038 13-331 (345)
239 PRK03629 tolB translocation pr 99.4 1.6E-10 3.5E-15 132.0 29.8 214 387-654 179-406 (429)
240 PRK02889 tolB translocation pr 99.4 3.8E-11 8.2E-16 137.5 24.4 226 355-634 186-424 (427)
241 PRK05137 tolB translocation pr 99.4 1.7E-10 3.6E-15 133.0 29.5 216 387-656 182-414 (435)
242 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 3.1E-14 111.0 32.0 282 729-1036 15-328 (346)
243 PF10282 Lactonase: Lactonase, 99.4 6.5E-10 1.4E-14 123.5 32.7 252 824-1090 36-328 (345)
244 PF04762 IKI3: IKI3 family; I 99.4 1.2E-07 2.6E-12 116.5 54.8 536 363-1035 74-688 (928)
245 KOG3881 Uncharacterized conser 99.4 5E-11 1.1E-15 121.6 20.4 276 470-919 54-342 (412)
246 PRK04922 tolB translocation pr 99.4 1.4E-10 3.1E-15 133.3 27.1 215 387-655 184-412 (433)
247 KOG2315 Predicted translation 99.4 2E-09 4.2E-14 115.4 33.1 195 823-1033 164-392 (566)
248 PF08662 eIF2A: Eukaryotic tra 99.4 5.7E-11 1.2E-15 118.7 20.3 155 869-1040 9-187 (194)
249 PF04762 IKI3: IKI3 family; I 99.4 4.4E-07 9.6E-12 111.6 57.9 521 365-1084 22-639 (928)
250 PRK05137 tolB translocation pr 99.4 1.5E-10 3.2E-15 133.4 26.3 225 354-634 191-432 (435)
251 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.4E-09 7.5E-14 113.6 33.7 205 828-1040 108-339 (352)
252 COG4946 Uncharacterized protei 99.3 2.2E-08 4.8E-13 104.6 37.5 171 835-1020 331-507 (668)
253 COG5354 Uncharacterized protei 99.3 2E-09 4.3E-14 113.7 30.2 310 758-1103 72-420 (561)
254 KOG1832 HIV-1 Vpr-binding prot 99.3 2E-12 4.3E-17 143.4 8.4 301 168-641 1012-1318(1516)
255 PRK02889 tolB translocation pr 99.3 2.2E-10 4.8E-15 131.2 25.1 192 422-646 191-392 (427)
256 KOG3881 Uncharacterized conser 99.3 3.3E-10 7.1E-15 115.7 22.0 255 362-656 53-322 (412)
257 COG5354 Uncharacterized protei 99.3 4.6E-09 9.9E-14 111.1 30.6 133 888-1036 255-400 (561)
258 COG2706 3-carboxymuconate cycl 99.3 8.5E-09 1.8E-13 105.5 31.0 256 823-1094 38-331 (346)
259 KOG2314 Translation initiation 99.3 3.3E-09 7.1E-14 112.9 29.0 295 758-1087 250-576 (698)
260 PF08662 eIF2A: Eukaryotic tra 99.3 3E-10 6.5E-15 113.6 19.2 111 823-939 58-180 (194)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.2E-08 2.7E-13 109.4 31.7 238 832-1087 53-333 (352)
262 PRK04792 tolB translocation pr 99.2 1.2E-09 2.6E-14 125.4 25.4 224 357-634 210-446 (448)
263 PRK01029 tolB translocation pr 99.2 1.7E-09 3.7E-14 123.0 25.2 225 362-636 182-426 (428)
264 KOG1354 Serine/threonine prote 99.2 1.5E-09 3.2E-14 108.8 20.6 280 361-657 22-362 (433)
265 PRK00178 tolB translocation pr 99.2 2.9E-09 6.2E-14 123.2 26.5 227 354-634 188-427 (430)
266 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.8E-14 109.3 19.9 213 421-666 19-239 (404)
267 TIGR02800 propeller_TolB tol-p 99.2 6E-09 1.3E-13 120.6 28.6 191 422-646 185-386 (417)
268 TIGR02800 propeller_TolB tol-p 99.2 3.1E-09 6.6E-14 123.0 24.3 166 355-549 180-356 (417)
269 KOG4547 WD40 repeat-containing 99.2 4.9E-09 1.1E-13 113.5 23.5 188 834-1032 3-221 (541)
270 KOG2314 Translation initiation 99.2 1.3E-08 2.8E-13 108.5 26.0 321 584-1032 214-574 (698)
271 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.5E-14 117.1 19.1 147 767-939 68-221 (541)
272 KOG0280 Uncharacterized conser 99.1 7.5E-09 1.6E-13 101.9 20.2 274 730-1034 46-336 (339)
273 PRK00178 tolB translocation pr 99.1 3.3E-08 7.2E-13 114.3 28.2 199 422-654 194-406 (430)
274 PRK01029 tolB translocation pr 99.1 4.3E-08 9.2E-13 111.6 27.5 219 387-656 165-405 (428)
275 PRK04792 tolB translocation pr 99.1 5.4E-08 1.2E-12 111.8 28.2 198 422-653 213-424 (448)
276 TIGR03300 assembly_YfgL outer 99.0 5.8E-08 1.3E-12 110.3 27.0 306 530-935 66-376 (377)
277 KOG0280 Uncharacterized conser 99.0 2.3E-08 5.1E-13 98.5 20.0 192 363-571 68-265 (339)
278 TIGR03300 assembly_YfgL outer 99.0 1.3E-07 2.8E-12 107.4 29.8 228 379-656 67-299 (377)
279 PLN02919 haloacid dehalogenase 99.0 1.2E-07 2.7E-12 118.9 30.1 257 827-1087 570-891 (1057)
280 KOG4190 Uncharacterized conser 99.0 1.6E-09 3.4E-14 114.6 10.3 239 822-1082 733-986 (1034)
281 KOG1064 RAVE (regulator of V-A 99.0 3.3E-09 7.2E-14 127.4 13.4 198 363-620 2207-2408(2439)
282 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.8E-14 114.2 9.5 210 421-656 730-950 (1034)
283 KOG3914 WD repeat protein WDR4 98.9 1.3E-08 2.9E-13 105.0 14.0 168 367-557 65-233 (390)
284 PLN02919 haloacid dehalogenase 98.9 1E-06 2.2E-11 110.8 32.5 275 368-656 571-890 (1057)
285 PF15492 Nbas_N: Neuroblastoma 98.9 8.6E-07 1.9E-11 88.4 23.1 209 830-1040 3-268 (282)
286 KOG3617 WD40 and TPR repeat-co 98.9 1.2E-06 2.6E-11 98.1 26.5 110 368-504 19-132 (1416)
287 KOG0309 Conserved WD40 repeat- 98.9 1.5E-08 3.3E-13 111.3 11.7 270 354-656 55-341 (1081)
288 KOG4532 WD40-like repeat conta 98.8 7.4E-07 1.6E-11 86.8 21.2 241 836-1085 84-332 (344)
289 PRK04043 tolB translocation pr 98.8 1.7E-06 3.8E-11 97.7 25.7 157 365-550 188-360 (419)
290 KOG1064 RAVE (regulator of V-A 98.8 4.2E-08 9.1E-13 118.3 12.2 200 422-664 2204-2407(2439)
291 PF07433 DUF1513: Protein of u 98.7 5.2E-06 1.1E-10 85.9 24.5 185 829-1024 55-278 (305)
292 PF15492 Nbas_N: Neuroblastoma 98.7 4.4E-06 9.5E-11 83.4 23.0 216 871-1093 3-270 (282)
293 PF13360 PQQ_2: PQQ-like domai 98.7 2.3E-06 5E-11 90.4 23.0 224 844-1091 2-237 (238)
294 PRK11138 outer membrane biogen 98.7 1.2E-05 2.6E-10 91.6 29.8 309 487-937 71-393 (394)
295 COG5170 CDC55 Serine/threonine 98.7 3.5E-07 7.6E-12 90.6 14.3 225 425-666 25-321 (460)
296 PF07433 DUF1513: Protein of u 98.7 2.2E-05 4.7E-10 81.4 27.3 208 826-1040 6-256 (305)
297 PRK04043 tolB translocation pr 98.7 9.1E-06 2E-10 91.9 27.1 208 846-1084 170-398 (419)
298 PRK11138 outer membrane biogen 98.6 1.7E-05 3.7E-10 90.4 29.0 211 844-1083 169-393 (394)
299 KOG1897 Damage-specific DNA bi 98.6 0.0028 6E-08 74.1 50.7 555 434-1085 265-943 (1096)
300 COG5170 CDC55 Serine/threonine 98.6 3.1E-07 6.8E-12 91.0 12.2 159 822-985 170-365 (460)
301 KOG4532 WD40-like repeat conta 98.6 5.9E-06 1.3E-10 80.7 20.5 232 635-939 83-332 (344)
302 KOG4714 Nucleoporin [Nuclear s 98.6 4.8E-07 1E-11 87.8 13.1 210 367-611 39-255 (319)
303 KOG3914 WD repeat protein WDR4 98.6 3.5E-07 7.6E-12 94.7 12.9 167 428-620 64-233 (390)
304 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00026 5.6E-09 69.3 30.5 146 478-651 17-162 (354)
305 PF08450 SGL: SMP-30/Gluconola 98.6 0.00016 3.5E-09 76.5 32.8 226 368-643 3-244 (246)
306 PF08450 SGL: SMP-30/Gluconola 98.6 4.4E-05 9.5E-10 80.8 28.1 220 828-1073 3-244 (246)
307 KOG0309 Conserved WD40 repeat- 98.6 3.7E-07 7.9E-12 100.8 11.9 242 330-611 84-340 (1081)
308 KOG0882 Cyclophilin-related pe 98.6 3.8E-06 8.3E-11 87.9 17.9 213 425-665 8-241 (558)
309 KOG3617 WD40 and TPR repeat-co 98.5 9.3E-06 2E-10 91.3 21.3 115 430-553 19-137 (1416)
310 PF10607 CLTH: CTLH/CRA C-term 98.5 6E-07 1.3E-11 85.7 9.5 134 38-182 5-141 (145)
311 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00042 9.1E-09 67.9 28.4 146 370-543 16-161 (354)
312 KOG2695 WD40 repeat protein [G 98.5 6E-07 1.3E-11 90.6 9.4 165 371-559 218-388 (425)
313 PF13360 PQQ_2: PQQ-like domai 98.5 3E-05 6.5E-10 81.8 23.2 227 386-657 2-233 (238)
314 KOG4714 Nucleoporin [Nuclear s 98.5 1.8E-06 3.8E-11 84.0 12.0 198 868-1085 39-255 (319)
315 KOG0882 Cyclophilin-related pe 98.5 1.4E-06 3.1E-11 91.0 12.0 213 864-1087 8-234 (558)
316 PF06433 Me-amine-dh_H: Methyl 98.4 5.5E-05 1.2E-09 79.3 23.4 207 827-1040 97-329 (342)
317 PF00400 WD40: WD domain, G-be 98.4 6.7E-07 1.4E-11 63.0 6.1 39 898-936 1-39 (39)
318 KOG2695 WD40 repeat protein [G 98.4 1.4E-06 3E-11 88.1 9.7 151 882-1040 228-385 (425)
319 PRK02888 nitrous-oxide reducta 98.4 5.1E-05 1.1E-09 86.0 23.1 185 832-1032 200-405 (635)
320 KOG1920 IkappaB kinase complex 98.4 0.0013 2.9E-08 78.4 34.9 275 581-937 69-364 (1265)
321 KOG0396 Uncharacterized conser 98.4 1.5E-06 3.3E-11 89.0 9.5 121 5-126 115-243 (389)
322 KOG1832 HIV-1 Vpr-binding prot 98.3 6.8E-07 1.5E-11 100.6 6.4 198 856-1087 1092-1294(1516)
323 KOG2066 Vacuolar assembly/sort 98.3 1.1E-05 2.4E-10 91.1 15.5 189 866-1084 40-233 (846)
324 KOG1920 IkappaB kinase complex 98.3 0.00014 3.1E-09 86.2 24.3 275 757-1083 68-364 (1265)
325 KOG1645 RING-finger-containing 98.3 7.7E-05 1.7E-09 77.5 19.3 223 421-654 188-461 (463)
326 KOG2114 Vacuolar assembly/sort 98.3 4.8E-05 1E-09 86.7 19.4 207 872-1092 30-251 (933)
327 PRK02888 nitrous-oxide reducta 98.3 6.2E-05 1.3E-09 85.4 20.0 224 834-1085 139-405 (635)
328 KOG1645 RING-finger-containing 98.3 0.0001 2.2E-09 76.7 19.5 261 802-1085 174-462 (463)
329 KOG1275 PAB-dependent poly(A) 98.2 2E-05 4.4E-10 89.9 14.8 181 835-1029 146-340 (1118)
330 KOG1897 Damage-specific DNA bi 98.2 0.031 6.8E-07 65.8 49.1 470 472-1029 488-1002(1096)
331 PF00400 WD40: WD domain, G-be 98.2 5.1E-06 1.1E-10 58.4 5.8 39 855-894 1-39 (39)
332 KOG3621 WD40 repeat-containing 98.1 0.00043 9.4E-09 77.6 21.5 282 756-1087 32-356 (726)
333 cd00216 PQQ_DH Dehydrogenases 98.0 0.0037 8.1E-08 73.0 30.0 210 438-656 61-321 (488)
334 KOG2066 Vacuolar assembly/sort 98.0 0.00016 3.4E-09 82.1 17.3 185 824-1031 39-233 (846)
335 smart00668 CTLH C-terminal to 98.0 5.7E-06 1.2E-10 64.3 4.4 53 37-90 4-56 (58)
336 PF08596 Lgl_C: Lethal giant l 98.0 0.00071 1.5E-08 75.2 22.3 282 759-1083 3-334 (395)
337 PF06433 Me-amine-dh_H: Methyl 98.0 0.0024 5.1E-08 67.4 24.0 258 804-1087 20-323 (342)
338 KOG2114 Vacuolar assembly/sort 98.0 0.00034 7.4E-09 80.0 19.0 199 830-1036 29-248 (933)
339 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00077 1.7E-08 75.3 22.1 291 600-975 21-344 (353)
340 KOG1275 PAB-dependent poly(A) 98.0 0.00015 3.3E-09 83.0 16.0 185 437-653 146-341 (1118)
341 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0065 1.4E-07 67.9 28.8 104 373-501 1-129 (353)
342 cd00216 PQQ_DH Dehydrogenases 98.0 0.0026 5.7E-08 74.3 26.6 244 837-1093 111-433 (488)
343 PF08513 LisH: LisH; InterPro 97.9 1.5E-05 3.3E-10 49.5 3.9 27 6-32 1-27 (27)
344 PF08596 Lgl_C: Lethal giant l 97.9 0.0026 5.7E-08 70.8 24.4 268 366-653 3-334 (395)
345 KOG3621 WD40 repeat-containing 97.9 0.0013 2.9E-08 73.9 21.4 121 363-504 32-155 (726)
346 PF11768 DUF3312: Protein of u 97.9 0.00074 1.6E-08 74.9 18.5 114 824-940 205-331 (545)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.041 8.9E-07 64.6 34.3 61 845-907 441-501 (527)
348 PF06977 SdiA-regulated: SdiA- 97.9 0.0043 9.2E-08 63.9 23.0 217 860-1081 16-247 (248)
349 smart00667 LisH Lissencephaly 97.8 3E-05 6.5E-10 52.4 4.3 32 4-35 2-33 (34)
350 PF04053 Coatomer_WDAD: Coatom 97.8 0.0018 3.9E-08 73.1 20.0 222 758-1034 33-265 (443)
351 PF14583 Pectate_lyase22: Olig 97.8 0.014 3E-07 63.0 25.4 286 764-1085 42-382 (386)
352 PF06977 SdiA-regulated: SdiA- 97.8 0.017 3.7E-07 59.5 25.3 162 363-546 20-200 (248)
353 KOG1008 Uncharacterized conser 97.7 1.2E-05 2.6E-10 88.3 2.0 205 363-610 55-275 (783)
354 PF04841 Vps16_N: Vps16, N-ter 97.7 0.017 3.7E-07 65.4 26.7 198 830-1040 34-255 (410)
355 COG3391 Uncharacterized conser 97.7 0.012 2.7E-07 66.2 25.4 208 825-1040 74-292 (381)
356 PF04053 Coatomer_WDAD: Coatom 97.7 0.006 1.3E-07 68.9 22.2 217 824-1086 32-264 (443)
357 PF11768 DUF3312: Protein of u 97.7 0.00076 1.7E-08 74.8 14.2 129 356-507 197-333 (545)
358 KOG2817 Predicted E3 ubiquitin 97.6 0.00045 9.8E-09 72.6 11.2 113 5-119 116-241 (394)
359 PRK13616 lipoprotein LpqB; Pro 97.6 0.01 2.3E-07 69.8 23.9 205 866-1098 350-582 (591)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.066 1.4E-06 62.8 29.6 149 889-1040 272-499 (527)
361 COG0823 TolB Periplasmic compo 97.5 0.0039 8.4E-08 70.2 18.3 169 354-550 182-361 (425)
362 COG3391 Uncharacterized conser 97.5 0.092 2E-06 59.2 29.3 241 826-1087 32-286 (381)
363 PF04841 Vps16_N: Vps16, N-ter 97.5 0.2 4.3E-06 56.9 31.8 136 831-995 185-322 (410)
364 PF14583 Pectate_lyase22: Olig 97.5 0.099 2.1E-06 56.6 27.0 228 371-645 42-303 (386)
365 COG0823 TolB Periplasmic compo 97.4 0.016 3.6E-07 65.3 21.1 175 846-1037 174-364 (425)
366 PF02897 Peptidase_S9_N: Proly 97.4 0.12 2.6E-06 59.5 28.7 245 367-656 126-406 (414)
367 PF00780 CNH: CNH domain; Int 97.4 0.069 1.5E-06 57.6 25.0 234 767-1040 5-264 (275)
368 PRK13616 lipoprotein LpqB; Pro 97.3 0.012 2.6E-07 69.4 19.1 188 825-1026 350-563 (591)
369 KOG1008 Uncharacterized conser 97.3 0.00032 6.9E-09 77.5 5.6 253 824-1087 56-338 (783)
370 COG3386 Gluconolactonase [Carb 97.1 0.13 2.8E-06 55.3 23.0 221 830-1074 30-275 (307)
371 PF00780 CNH: CNH domain; Int 97.1 0.22 4.7E-06 53.7 25.1 226 833-1087 4-258 (275)
372 PF08553 VID27: VID27 cytoplas 97.1 0.031 6.8E-07 66.7 19.5 148 877-1030 492-646 (794)
373 PF03178 CPSF_A: CPSF A subuni 97.1 0.032 7E-07 61.6 18.9 179 836-1028 42-262 (321)
374 COG3490 Uncharacterized protei 97.1 0.1 2.2E-06 52.8 19.5 234 828-1081 71-345 (366)
375 PF08553 VID27: VID27 cytoplas 97.1 0.016 3.4E-07 69.2 16.7 150 483-653 492-646 (794)
376 PF02897 Peptidase_S9_N: Proly 97.0 0.16 3.4E-06 58.6 25.2 239 827-1087 126-407 (414)
377 COG3386 Gluconolactonase [Carb 97.0 0.23 4.9E-06 53.4 23.9 230 371-644 31-275 (307)
378 PF03178 CPSF_A: CPSF A subuni 97.0 0.16 3.5E-06 56.1 23.9 223 387-653 2-264 (321)
379 KOG4640 Anaphase-promoting com 97.0 0.003 6.5E-08 70.3 9.6 94 364-480 20-114 (665)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.18 3.9E-06 56.2 23.3 93 431-524 6-117 (415)
381 KOG2395 Protein involved in va 96.9 0.019 4.2E-07 62.6 13.8 207 426-653 276-499 (644)
382 COG3490 Uncharacterized protei 96.8 0.15 3.2E-06 51.6 18.8 238 595-894 83-346 (366)
383 smart00320 WD40 WD40 repeats. 96.8 0.0026 5.6E-08 43.8 5.2 39 898-936 2-40 (40)
384 KOG4640 Anaphase-promoting com 96.8 0.0053 1.1E-07 68.4 9.2 95 865-968 20-115 (665)
385 KOG2079 Vacuolar assembly/sort 96.7 0.043 9.4E-07 65.2 16.0 99 379-502 101-202 (1206)
386 KOG2395 Protein involved in va 96.5 0.043 9.2E-07 60.1 13.6 144 880-1030 348-499 (644)
387 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.15 3.2E-06 44.4 14.3 102 367-498 2-109 (111)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 1.7 3.6E-05 48.6 25.7 83 823-905 306-407 (415)
389 TIGR03074 PQQ_membr_DH membran 96.4 3.7 8.1E-05 50.2 37.1 213 438-657 194-480 (764)
390 PF07995 GSDH: Glucose / Sorbo 96.4 1.3 2.8E-05 48.8 25.0 243 826-1079 3-330 (331)
391 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.21 4.5E-06 43.5 14.0 66 474-546 2-70 (111)
392 PHA02713 hypothetical protein; 96.3 0.31 6.7E-06 57.9 20.9 227 846-1100 273-547 (557)
393 COG3204 Uncharacterized protei 96.3 0.8 1.7E-05 47.1 20.3 199 755-981 83-306 (316)
394 KOG4441 Proteins containing BT 96.2 0.52 1.1E-05 55.9 22.0 234 834-1095 283-555 (571)
395 PF14870 PSII_BNR: Photosynthe 96.2 0.65 1.4E-05 49.6 20.4 159 863-1028 142-301 (302)
396 smart00320 WD40 WD40 repeats. 96.2 0.0091 2E-07 40.9 4.7 38 856-894 3-40 (40)
397 PF10647 Gmad1: Lipoprotein Lp 96.2 0.79 1.7E-05 48.2 21.1 148 825-976 24-183 (253)
398 PRK10115 protease 2; Provision 96.2 2.7 5.9E-05 51.3 28.4 196 825-1031 127-344 (686)
399 KOG2079 Vacuolar assembly/sort 96.2 0.045 9.8E-07 65.1 12.4 107 830-939 93-204 (1206)
400 PF07995 GSDH: Glucose / Sorbo 96.2 2.3 5E-05 46.9 25.4 58 592-649 271-330 (331)
401 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.1 6.8E-05 46.7 30.8 286 769-1090 37-366 (418)
402 PF15390 DUF4613: Domain of un 96.0 0.13 2.8E-06 57.6 14.1 159 866-1034 20-189 (671)
403 PF14727 PHTB1_N: PTHB1 N-term 95.9 1.5 3.2E-05 49.2 22.3 197 720-939 145-361 (418)
404 KOG2444 WD40 repeat protein [G 95.9 0.023 5E-07 55.6 7.0 104 836-939 70-178 (238)
405 PHA02713 hypothetical protein; 95.9 0.37 8E-06 57.3 18.6 188 834-1036 302-538 (557)
406 PF05096 Glu_cyclase_2: Glutam 95.8 2.4 5.2E-05 43.8 21.4 186 826-1020 46-249 (264)
407 KOG1898 Splicing factor 3b, su 95.8 6.7 0.00014 47.7 36.6 112 963-1087 938-1051(1205)
408 PF10647 Gmad1: Lipoprotein Lp 95.8 0.56 1.2E-05 49.3 17.6 150 867-1024 25-188 (253)
409 PF12894 Apc4_WD40: Anaphase-p 95.7 0.024 5.3E-07 40.9 4.9 34 364-399 11-44 (47)
410 COG3204 Uncharacterized protei 95.6 1.2 2.7E-05 45.8 17.9 170 904-1086 81-265 (316)
411 KOG4499 Ca2+-binding protein R 95.6 2.3 4.9E-05 42.1 18.9 48 586-635 217-264 (310)
412 PF12894 Apc4_WD40: Anaphase-p 95.6 0.043 9.3E-07 39.6 5.7 31 426-456 11-41 (47)
413 PF05694 SBP56: 56kDa selenium 95.5 0.67 1.4E-05 50.8 16.6 239 877-1120 86-378 (461)
414 KOG4499 Ca2+-binding protein R 95.3 0.79 1.7E-05 45.2 15.0 89 828-917 161-262 (310)
415 PRK10115 protease 2; Provision 95.3 10 0.00022 46.5 33.6 247 758-1035 127-398 (686)
416 KOG4441 Proteins containing BT 95.2 0.82 1.8E-05 54.2 18.2 194 827-1036 325-551 (571)
417 KOG1898 Splicing factor 3b, su 95.2 11 0.00023 46.0 32.4 105 830-938 939-1048(1205)
418 TIGR03074 PQQ_membr_DH membran 95.1 5.3 0.00011 49.0 24.7 210 880-1092 196-485 (764)
419 cd08044 TAF5_NTD2 TAF5_NTD2 is 95.0 0.055 1.2E-06 50.2 6.2 68 65-133 23-90 (133)
420 PF10168 Nup88: Nuclear pore c 94.9 4.4 9.5E-05 49.2 23.3 94 823-939 83-180 (717)
421 PF04494 TFIID_90kDa: WD40 ass 94.9 0.057 1.2E-06 50.7 6.0 67 66-133 35-101 (142)
422 KOG2444 WD40 repeat protein [G 94.8 0.083 1.8E-06 51.9 6.8 101 380-503 73-177 (238)
423 PF15390 DUF4613: Domain of un 94.6 11 0.00023 43.1 28.4 156 472-653 20-185 (671)
424 PF05694 SBP56: 56kDa selenium 94.5 4.5 9.8E-05 44.6 19.5 191 829-1020 134-392 (461)
425 TIGR02604 Piru_Ver_Nterm putat 94.4 8.9 0.00019 43.1 23.3 138 825-975 14-200 (367)
426 TIGR03118 PEPCTERM_chp_1 conse 94.4 7.6 0.00017 40.6 21.6 231 428-665 24-289 (336)
427 PRK13684 Ycf48-like protein; P 94.3 10 0.00022 41.9 27.7 155 865-1029 172-329 (334)
428 COG4257 Vgb Streptogramin lyas 94.3 4.4 9.5E-05 41.3 17.5 199 867-1093 63-272 (353)
429 KOG1916 Nuclear protein, conta 94.2 0.039 8.4E-07 64.1 3.7 178 845-1031 153-374 (1283)
430 PF05096 Glu_cyclase_2: Glutam 94.2 2.2 4.7E-05 44.1 15.8 158 910-1087 46-206 (264)
431 PF10168 Nup88: Nuclear pore c 94.0 8.1 0.00018 47.0 22.6 66 386-452 41-110 (717)
432 PHA03098 kelch-like protein; P 93.9 2.1 4.5E-05 51.3 17.8 188 834-1036 293-516 (534)
433 PHA03098 kelch-like protein; P 93.6 4.1 8.8E-05 48.8 19.8 193 877-1094 294-519 (534)
434 PHA02790 Kelch-like protein; P 93.6 3 6.6E-05 48.8 18.0 183 835-1034 271-473 (480)
435 PF13449 Phytase-like: Esteras 93.5 14 0.0003 40.6 22.1 165 865-1031 19-249 (326)
436 PF12234 Rav1p_C: RAVE protein 93.5 1.5 3.3E-05 51.4 14.8 118 866-986 30-155 (631)
437 KOG2280 Vacuolar assembly/sort 93.0 11 0.00024 44.2 20.0 182 846-1041 65-256 (829)
438 PF14870 PSII_BNR: Photosynthe 92.9 16 0.00034 39.3 30.2 231 826-1081 63-301 (302)
439 PRK13684 Ycf48-like protein; P 92.8 18 0.00039 39.9 29.7 158 908-1084 172-331 (334)
440 COG3823 Glutamine cyclotransfe 92.8 4.5 9.7E-05 39.4 14.1 173 835-1019 55-247 (262)
441 PF14761 HPS3_N: Hermansky-Pud 92.6 11 0.00024 37.6 16.9 147 880-1030 30-213 (215)
442 PF12234 Rav1p_C: RAVE protein 92.5 3.4 7.4E-05 48.6 15.8 124 473-609 31-155 (631)
443 KOG1916 Nuclear protein, conta 92.3 0.14 3E-06 59.8 4.3 108 833-942 192-327 (1283)
444 KOG2247 WD40 repeat-containing 92.2 0.021 4.5E-07 61.9 -2.2 149 759-936 36-186 (615)
445 COG5167 VID27 Protein involved 92.1 5.9 0.00013 43.9 15.7 150 482-654 477-632 (776)
446 TIGR02604 Piru_Ver_Nterm putat 91.9 5.5 0.00012 44.8 16.5 148 909-1076 14-205 (367)
447 PF10313 DUF2415: Uncharacteri 91.6 0.5 1.1E-05 33.0 4.7 33 365-397 1-35 (43)
448 PHA02790 Kelch-like protein; P 91.4 8.5 0.00019 45.0 18.0 185 877-1087 271-473 (480)
449 KOG3630 Nuclear pore complex, 91.1 2.2 4.8E-05 51.8 12.4 146 824-975 100-260 (1405)
450 PF10214 Rrn6: RNA polymerase 90.8 53 0.0012 41.0 26.2 174 823-1033 78-278 (765)
451 PLN00033 photosystem II stabil 90.6 34 0.00074 38.6 27.2 152 868-1028 241-396 (398)
452 TIGR03118 PEPCTERM_chp_1 conse 90.4 26 0.00056 36.8 25.3 210 826-1040 24-288 (336)
453 PF08728 CRT10: CRT10; InterP 90.1 13 0.00028 44.4 17.4 116 428-546 102-245 (717)
454 COG4257 Vgb Streptogramin lyas 90.1 25 0.00054 36.2 20.9 242 823-1095 60-317 (353)
455 PF14761 HPS3_N: Hermansky-Pud 90.1 18 0.00038 36.1 15.6 156 826-987 19-214 (215)
456 PF10313 DUF2415: Uncharacteri 89.9 1 2.2E-05 31.5 5.0 32 866-897 1-34 (43)
457 PF03022 MRJP: Major royal jel 89.4 28 0.00061 37.4 18.3 194 827-1021 3-255 (287)
458 PF07676 PD40: WD40-like Beta 89.2 1.3 2.8E-05 30.6 5.4 33 360-392 4-38 (39)
459 COG1520 FOG: WD40-like repeat 88.8 46 0.001 37.5 21.1 200 833-1040 66-277 (370)
460 KOG2247 WD40 repeat-containing 88.4 0.073 1.6E-06 57.9 -2.1 122 355-501 65-186 (615)
461 PF11725 AvrE: Pathogenicity f 88.0 69 0.0015 41.9 22.1 149 363-548 361-517 (1774)
462 COG4590 ABC-type uncharacteriz 87.7 2.6 5.7E-05 45.7 8.8 160 823-992 219-391 (733)
463 KOG3630 Nuclear pore complex, 87.5 5.4 0.00012 48.8 12.0 148 472-642 101-261 (1405)
464 KOG1983 Tomosyn and related SN 87.5 9.7 0.00021 48.3 15.1 69 961-1036 201-269 (993)
465 PF14781 BBS2_N: Ciliary BBSom 87.4 23 0.00049 32.4 13.1 118 367-513 1-135 (136)
466 COG4590 ABC-type uncharacteriz 87.3 5.9 0.00013 43.2 11.0 171 856-1035 211-390 (733)
467 PF05935 Arylsulfotrans: Aryls 87.3 21 0.00046 41.6 16.9 121 914-1043 153-313 (477)
468 KOG3616 Selective LIM binding 87.1 14 0.00031 42.8 14.4 78 426-512 14-91 (1636)
469 KOG4659 Uncharacterized conser 87.1 97 0.0021 39.3 31.9 419 366-938 366-826 (1899)
470 PF13449 Phytase-like: Esteras 86.7 36 0.00078 37.5 17.6 174 756-939 18-250 (326)
471 COG1520 FOG: WD40-like repeat 86.5 62 0.0013 36.5 22.6 206 372-621 65-279 (370)
472 KOG4460 Nuclear pore complex, 86.1 21 0.00045 40.1 14.5 93 526-619 112-207 (741)
473 KOG2280 Vacuolar assembly/sort 86.0 24 0.00052 41.6 15.6 94 887-987 63-156 (829)
474 PF12657 TFIIIC_delta: Transcr 85.9 3.5 7.5E-05 40.4 8.2 31 427-457 86-122 (173)
475 PF07569 Hira: TUP1-like enhan 85.5 4.7 0.0001 41.1 9.2 74 371-458 17-97 (219)
476 TIGR03548 mutarot_permut cycli 85.4 63 0.0014 35.5 19.9 67 969-1036 123-199 (323)
477 KOG2377 Uncharacterized conser 84.9 6.2 0.00013 43.1 9.8 123 363-505 65-187 (657)
478 COG3292 Predicted periplasmic 84.8 80 0.0017 36.3 25.8 110 360-497 160-269 (671)
479 KOG1900 Nuclear pore complex, 84.5 8.8 0.00019 48.0 12.0 160 870-1032 83-273 (1311)
480 PF02333 Phytase: Phytase; In 83.7 77 0.0017 35.2 22.0 199 834-1040 66-300 (381)
481 KOG2063 Vacuolar assembly/sort 83.4 79 0.0017 39.2 19.2 249 763-1039 20-276 (877)
482 PF08728 CRT10: CRT10; InterP 83.0 4.9 0.00011 47.8 8.9 134 366-502 102-245 (717)
483 PF11635 Med16: Mediator compl 82.3 80 0.0017 39.3 19.6 78 1001-1079 259-345 (753)
484 TIGR03606 non_repeat_PQQ dehyd 82.3 31 0.00068 39.3 14.7 113 907-1022 28-166 (454)
485 COG5276 Uncharacterized conser 82.1 69 0.0015 33.5 19.4 187 836-1032 96-286 (370)
486 KOG1983 Tomosyn and related SN 82.1 39 0.00085 43.1 16.9 35 365-400 36-70 (993)
487 smart00036 CNH Domain found in 82.0 81 0.0018 34.2 24.0 210 823-1040 41-279 (302)
488 PF07569 Hira: TUP1-like enhan 81.7 8.8 0.00019 39.2 9.3 71 434-507 18-99 (219)
489 COG3823 Glutamine cyclotransfe 81.7 18 0.00039 35.5 10.4 151 919-1087 55-207 (262)
490 KOG1900 Nuclear pore complex, 81.4 20 0.00044 45.1 13.4 170 352-549 66-274 (1311)
491 PRK13613 lipoprotein LpqB; Pro 80.3 1.3E+02 0.0028 36.2 19.4 191 826-1025 364-576 (599)
492 PLN00033 photosystem II stabil 80.2 1.1E+02 0.0024 34.6 32.0 151 911-1081 241-396 (398)
493 PRK13615 lipoprotein LpqB; Pro 80.0 1.3E+02 0.0029 35.4 21.5 154 868-1032 336-503 (557)
494 COG5167 VID27 Protein involved 79.8 26 0.00057 39.1 12.2 144 877-1031 478-632 (776)
495 KOG2377 Uncharacterized conser 79.6 32 0.0007 37.9 12.7 127 884-1017 39-169 (657)
496 PF11715 Nup160: Nucleoporin N 79.1 30 0.00065 41.5 14.4 76 436-514 156-259 (547)
497 PRK13614 lipoprotein LpqB; Pro 79.0 1.5E+02 0.0032 35.3 19.0 157 867-1033 344-520 (573)
498 PF02333 Phytase: Phytase; In 78.8 1.1E+02 0.0025 33.9 20.0 198 436-656 66-292 (381)
499 smart00036 CNH Domain found in 78.5 1.1E+02 0.0023 33.3 25.4 233 835-1087 12-273 (302)
500 COG5290 IkappaB kinase complex 78.2 1E+02 0.0022 36.8 16.6 90 914-1012 252-347 (1243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-67 Score=522.72 Aligned_cols=490 Identities=22% Similarity=0.343 Sum_probs=397.6
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHH
Q 001224 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1120)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1120)
+-|++|++.|+|+++||.+|+.+||.|+|+.+. .+.|.+.++.|+|++++..+..+. .+++....++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999999884 3334445669999999999
Q ss_pred HHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccc-ccchhhhccCCCchHHHHHHHHHHHhhcccCCCcccc
Q 001224 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN-FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK 160 (1120)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~ 160 (1120)
||++..|...+|+.+||++..++.. +.+++++|+.-|..++ +..++..- -......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 9999999999999999999999886 8999999988766543 33333321 112567899999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001224 161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240 (1120)
Q Consensus 161 ~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1120)
+|++||+.||+||++||+++|.||| +.+..|||.||+|++ .++|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip--------------- 213 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP--------------- 213 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence 9999999999999999999999999 577799999999999 4444
Q ss_pred CCCCCCCCcccccccCCCCCCCCcccccccCCCCCCCccccccccccccCCCCCCCCCCcCCCCCCchhhhcccCCCCCc
Q 001224 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGIS 320 (1120)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~ 320 (1120)
.++
T Consensus 214 ---------------------------------~qt-------------------------------------------- 216 (519)
T KOG0293|consen 214 ---------------------------------SQT-------------------------------------------- 216 (519)
T ss_pred ---------------------------------chh--------------------------------------------
Confidence 000
Q ss_pred cccccccccccccccCCCCcCCCCcCCCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCcee
Q 001224 321 DEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL 400 (1120)
Q Consensus 321 ~~v~~~v~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~ 400 (1120)
|
T Consensus 217 ---------~---------------------------------------------------------------------- 217 (519)
T KOG0293|consen 217 ---------W---------------------------------------------------------------------- 217 (519)
T ss_pred ---------h----------------------------------------------------------------------
Confidence 0
Q ss_pred EeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc
Q 001224 401 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480 (1120)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 480 (1120)
+++..|++.|+-+.||++|+|||+++.|.+..||.+.....++..+++.+|..+|..+.||
T Consensus 218 -------------------qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 218 -------------------QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred -------------------hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC
Confidence 0234466666666666667777777777777777666555566667899999999999999
Q ss_pred CCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC
Q 001224 481 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 559 (1120)
Q Consensus 481 ~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 559 (1120)
||++ ++++|+.|..+++||+.+|.+...+. +|...+.+++|.| ||..+++|+.|+++..||++....
T Consensus 279 PDdr--yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-------- 346 (519)
T KOG0293|consen 279 PDDR--YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-------- 346 (519)
T ss_pred CCCC--eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh--------
Confidence 9999 79999999999999999999988775 3567888999864 557899999999999999875331
Q ss_pred CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE
Q 001224 560 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 639 (1120)
Q Consensus 560 ~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 639 (1120)
..+.|.+...+..+++++||+++++.+.|..|++++..+.........+. .|++++.|.|++++
T Consensus 347 -------------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 347 -------------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLA 410 (519)
T ss_pred -------------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEE
Confidence 22233333456666666777789999999999999998877665554433 59999999999999
Q ss_pred EEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCC
Q 001224 640 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLAD 719 (1120)
Q Consensus 640 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1120)
++.-.+..+++||+... ..++.+.||...
T Consensus 411 LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------------- 439 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------------- 439 (519)
T ss_pred EEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------------
Confidence 99999999999999865 566666554321
Q ss_pred CcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccc
Q 001224 720 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 799 (1120)
Q Consensus 720 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 799 (1120)
.+++-
T Consensus 440 --------------------------------------------------~fiIr------------------------- 444 (519)
T KOG0293|consen 440 --------------------------------------------------HFIIR------------------------- 444 (519)
T ss_pred --------------------------------------------------ceEEE-------------------------
Confidence 11110
Q ss_pred ccCceeecCCCCCcccccCCCCCCCCCccEEEEc-cCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCC
Q 001224 800 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 877 (1120)
Q Consensus 800 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d 877 (1120)
-||. .+..++++|+ |+.|+||+..+++++.++.+|...|+||+|+|.+
T Consensus 445 ------------------------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 445 ------------------------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ------------------------------eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 1111 2457899999 9999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEee
Q 001224 878 NNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 878 ~~~lasg~~dg~v~vwd~~ 896 (1120)
..++|+|++||+||||...
T Consensus 495 p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPS 513 (519)
T ss_pred HHHhhccCCCCeEEEecCC
Confidence 9999999999999999765
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-60 Score=459.44 Aligned_cols=490 Identities=21% Similarity=0.323 Sum_probs=402.9
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1120)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (1120)
..+|||||.|||+|+.++.+.++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+-+..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 358999999999999999999999999999998 88999999999999999999999 44455778999999
Q ss_pred HHHHHccCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhccccccchhhhccCCCchHH-HHHHHHHHHhhcccCCCc
Q 001224 81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSA-RSIMLVELKKLIEANPLF 157 (1120)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~-R~~l~~~l~~~i~~~~~~ 157 (1120)
.|||+|.++...|..+||.. +.-|+..++++|-+|..||..+.+++.+.+.+ ..++. |..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d--ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD--SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc--chHHHHHHHHHHHhcCceEE----
Confidence 99999999999999999963 44456678999999999999999999999775 33444 45555555544443
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 001224 158 RDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHG 237 (1120)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1120)
+||+||..||.||++||+.+ |.+ ||++..+
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQ------------------------------------GLL------PPGt~iD 184 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQ------------------------------------GLL------PPGTTID 184 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhc------------------------------------CCC------CCCceee
Confidence 89999999999999999984 344 4778888
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCcccccccCCCCCCCccccccccccccCCCCCCCCCCcCCCCCCchhhhcccCCC
Q 001224 238 PFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPI 317 (1120)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 317 (1120)
+|++..+ ++..++.++|+...+.|+|++++.++
T Consensus 185 LFRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh~E-------------------------------------- 217 (508)
T KOG0275|consen 185 LFRGKAA---------MKDQEEERYPTQLARSIKFGQKSHVE-------------------------------------- 217 (508)
T ss_pred eccchhh---------hhhhHhhhchHHhhhheecccccchh--------------------------------------
Confidence 9999865 45667777777777777777776654
Q ss_pred CCccccccccccccccccCCCCcCCCCcCCCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC
Q 001224 318 GISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR 397 (1120)
Q Consensus 318 g~~~~v~~~v~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~ 397 (1120)
|..|||||+| |++|+.||.|.|||..+|
T Consensus 218 ---------------------------------------------------cA~FSPDgqy-LvsgSvDGFiEVWny~~G 245 (508)
T KOG0275|consen 218 ---------------------------------------------------CARFSPDGQY-LVSGSVDGFIEVWNYTTG 245 (508)
T ss_pred ---------------------------------------------------heeeCCCCce-Eeeccccceeeeehhccc
Confidence 4568889995 999999999999999999
Q ss_pred ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeec-ccccCeEE
Q 001224 398 ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVND 476 (1120)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~ 476 (1120)
+......++. + ..+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++ .+. .|+..|+|
T Consensus 246 KlrKDLkYQA----------q-d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~ 311 (508)
T KOG0275|consen 246 KLRKDLKYQA----------Q-DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTC 311 (508)
T ss_pred hhhhhhhhhh----------h-cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeE
Confidence 8764322111 1 1244578899999999999999999999999999999999987 454 89999999
Q ss_pred EEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee
Q 001224 477 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 556 (1120)
Q Consensus 477 v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 556 (1120)
+.||.|+.+ +++++.|.++++.-+.+|++++.++||...|+...| .++|+.+++++.||+|++|+..+.++..++.
T Consensus 312 l~FSrD~Sq--iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 312 LSFSRDNSQ--ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred EEEccCcch--hhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence 999999995 999999999999999999999999999999999887 4667899999999999999999999888776
Q ss_pred CCC--CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC-CCCCCcCeEEEc
Q 001224 557 APG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFN 633 (1120)
Q Consensus 557 ~~~--~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s 633 (1120)
..+ ..|.++..-|... ..++++...++|+|.++ .|+.+.++... ...+...++..|
T Consensus 388 ~~~~d~~vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCCCcccceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEec
Confidence 543 3455555544443 67899999999999998 57777777532 223456778999
Q ss_pred CCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCc
Q 001224 634 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD 713 (1120)
Q Consensus 634 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1120)
|.|.++.+.+.|+.++.+...+| .+.+.+.-|...+. .
T Consensus 447 pkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvI-----------------------------------------G 484 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVI-----------------------------------------G 484 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecC-ceeeeeeccccccc-----------------------------------------c
Confidence 99999999999999999999988 66666655554433 1
Q ss_pred ccccCCCcceeeccCCCcceeee
Q 001224 714 VRSLADVKPRITEESNDKSKVWK 736 (1120)
Q Consensus 714 ~~~~~~~~~l~~~~~d~~i~vw~ 736 (1120)
....|..+.+++.+.||.+++|.
T Consensus 485 l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 485 LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccCcccchhhhhcccchhhhcC
Confidence 23345678899999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-56 Score=477.17 Aligned_cols=573 Identities=15% Similarity=0.232 Sum_probs=473.0
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCcee-EeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
++|+++|+. |++... ..|.+-|+.++... .. .-.+....|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 776553 46889999998863 21 1334567899999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC
Q 001224 449 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 527 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 527 (1120)
.+++|++.+++.++ .+.. |.++|.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.+++|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 5666 999999999999996 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEE
Q 001224 528 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 606 (1120)
Q Consensus 528 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 606 (1120)
+...|++|+.|+++++||+.+... ...+..|...|+++++++|+. .+++++.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888899999999999999996554 677788888888888888865 6999999999999
Q ss_pred EECCCCceeEEEecCCCCCCcCeEEEcCC-----CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224 607 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 681 (1120)
Q Consensus 607 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1120)
||+.+.+...+++.... +-++.+-++ |.++++.+.+|.+++||..++....+.-+..... +
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e-----------~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE-----------I 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh-----------h
Confidence 99988877777765443 566777776 6799999999999999998883333222111000 0
Q ss_pred ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224 682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 761 (1120)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~ 761 (1120)
. ..........++....+..+.++|.++.....++ .+....|.
T Consensus 285 -----------------------------~-~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~ 327 (775)
T KOG0319|consen 285 -----------------------------D-HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEIL 327 (775)
T ss_pred -----------------------------h-cceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhhe
Confidence 0 1111223455666777889999988775544443 34678888
Q ss_pred EEEE-cCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEE
Q 001224 762 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 840 (1120)
Q Consensus 762 ~l~~-s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 840 (1120)
.+.| .|+.+.++++++.+.+++|++.+... . .+. +|...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~--GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIP--GHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEe--CchhheeeeeecccCcEEE
Confidence 8887 46778899999999999997633211 1 133 3999999999888889999
Q ss_pred EEe-CCcEEEEEcCCC----ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee---------eEeecc
Q 001224 841 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKG 906 (1120)
Q Consensus 841 ~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---------~~~l~~ 906 (1120)
+|+ |.++++|.++.+ -++....+|...|.+++++.....+|++++.|+++++|++...+. ..+...
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 999999988433 345667899999999999986678999999999999999976221 123457
Q ss_pred cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001224 907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 985 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d 985 (1120)
|...|++++++|+.+++||||.|++.+||+++. ......+.||.. .|.++.|+|..+.+++ +.|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 999999999999999999999999999999995 456778889886 8999999999999999 5999999999
Q ss_pred cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
+.+..|++++. ||...|..+.|-.+|+.|++++.||.+++|++.+++.++.+. .|.+. |+ +++-+| +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence 99999999987 999999999999999999999999999999999999999887 54444 88 778888 4
Q ss_pred CCEEEEEeCCCcEEEEecCCC
Q 001224 1066 PNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1066 ~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
...++||+.||.|.+|.=.+.
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cceeEecCCCeEEEEeecCcH
Confidence 679999999999999985543
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-56 Score=474.42 Aligned_cols=546 Identities=14% Similarity=0.204 Sum_probs=452.7
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC-CCCceEEEEEcCCCCeE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l 441 (1120)
..+.+++++.+||+++ |++++....+++|++.+++.+.. .+. |++||.-++|+|.|..|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 5689999999999995 88999999999999999977652 444 99999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeeccccCeEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS 520 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~ 520 (1120)
|+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-.+.+|++|+.|+++++||+.++. |+.++..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999988665 79999999999999999887789999999999999999554 58888999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
+.|.++ +..+++++.|..+.+||+...+...+++.. ..+.++.+-+++. ...+.++++++.
T Consensus 198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 998654 678999999999999999665555444332 2344444444311 001458999999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224 601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680 (1120)
Q Consensus 601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1120)
+|.+++||.++++++....... ...+..+...+....++..+.|..+.++|..+. .+.+.+-|..+.+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 9999999999998877665432 223666666666666777788899999998888 77788877777654 3
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224 681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 760 (1120)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 760 (1120)
....+ ++...+++++..+.+++|++.+.. +..+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~----c~ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSY----CQII----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCc----eEEE----eCchhhe
Confidence 33333 677899999999999999877643 2222 5699999
Q ss_pred EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC-CEE
Q 001224 761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 839 (1120)
Q Consensus 761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l 839 (1120)
.++....+|..+++++.|..+++|.++.+... .... -...+|.+.|.+++++..+ .++
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~-------------------~~~~--a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSK-------------------SLCV--AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcch-------------------hhhh--hhhcccccccceeeecccCccEE
Confidence 99998888889999999999999988322111 0111 1123499999999998655 578
Q ss_pred EEEe-CCcEEEEEcCCCce-----e----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224 840 MSAS-GGKISLFNMMTFKT-----M----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 840 ~~~s-dg~i~vwd~~~~~~-----~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
++++ |+++++|++...+. . .+...|...|+|++++| +.+++|+|+.|.+.+||++..+....+|.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 99999999975211 1 23456999999999999 899999999999999999999999999999999
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 988 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~ 988 (1120)
.|+++.|+|..+.|+|+|.|++|+||.+++ ..|++++.||.. .|..+.|-.+|++|++ +.||-+++|++.+
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999999 568999999985 8999999999999999 6999999999999
Q ss_pred ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
++|+.++- +|...|++++-++++.++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999875 8999999999999999999999999999996444
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6e-50 Score=412.96 Aligned_cols=575 Identities=14% Similarity=0.147 Sum_probs=432.7
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
-+.-.|.|+.++.+.+ ..|.+-+++...... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 3455677777777654 678888887765543 5889999999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEe-cCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC
Q 001224 449 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 527 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 527 (1120)
.|+|||....+.+ ...+++.-.++|..++|+.|+++ ++++| +.++..+++-+++|.-+..+.||...|.++.|-++.
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 9999999875433 22356777899999999999997 33443 344455666667888999999999999999997765
Q ss_pred CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 001224 528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607 (1120)
Q Consensus 528 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 607 (1120)
. -.+++|+.|++|.+|+-...+-..++..|...|.++.|+| ||..+++++.||++.+|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP---------------------DG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP---------------------DGSRFATAGSDGKIYIY 217 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC---------------------CCCeEEEecCCccEEEE
Confidence 4 5799999999999996554444444455555555555555 45589999999999999
Q ss_pred ECCCCceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchh
Q 001224 608 DMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISA 686 (1120)
Q Consensus 608 d~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1120)
|-.+|+.+..+. ...|...|.+++|+||+..+++++.|.+++|||+.+. .+.+++.-.... .
T Consensus 218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v-~--------------- 280 (603)
T KOG0318|consen 218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV-E--------------- 280 (603)
T ss_pred cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch-h---------------
Confidence 999999999997 3345568999999999999999999999999999988 555554321110 0
Q ss_pred hhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEc
Q 001224 687 AAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT 766 (1120)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 766 (1120)
...+........|++.+.+|+|..++.......... .+|...|+++..+
T Consensus 281 ------------------------dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 281 ------------------------DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTVS 329 (603)
T ss_pred ------------------------ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEEc
Confidence 111222334678999999999999998875522221 5799999999999
Q ss_pred CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc
Q 001224 767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 846 (1120)
Q Consensus 767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~ 846 (1120)
+++++|++++.||.|.-|+...+ ..- .+.+..|...|.+++.+..+.++.++-|.+
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g----------------------~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSG----------------------TSD--RLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCc----------------------ccc--ccccccccceEEEEeecCCCcEEEEecCCe
Confidence 99999999999999999986332 211 122344999999999998888887777999
Q ss_pred EEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224 847 ISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 924 (1120)
Q Consensus 847 i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 924 (1120)
+++.++........ ++- .....+++..+ ++.+++..+.++.+.+=|... +..+. -.-...+++++|++..++
T Consensus 386 l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCc---ceeec-cccccceEEEcCCCCEEE
Confidence 99999865433222 121 12234888888 666666666555444433322 12221 223467899999999999
Q ss_pred EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCC
Q 001224 925 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP 1003 (1120)
Q Consensus 925 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~ 1003 (1120)
.|+.|+.|.||.+...+......+.. |. ++|++++||||+.+||++ ..+.+.+||+.+.+.... .-.-|...
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FHtak 532 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFHTAK 532 (603)
T ss_pred EecccceEEEEEecCCcccceeeeec---cc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeeeeee
Confidence 99999999999999866433222222 22 489999999999999997 778999999998887332 22258999
Q ss_pred eeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1004 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
|.+++|||+.+++|+|+.|-.|.||+++.-...-.++ ..|..+ |+ .+.|. |...+++.+.|..|++|++
T Consensus 533 I~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 533 INCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeEEecc
Confidence 9999999999999999999999999998766554443 223233 66 88888 4789999999999999987
Q ss_pred C
Q 001224 1084 L 1084 (1120)
Q Consensus 1084 ~ 1084 (1120)
.
T Consensus 602 ~ 602 (603)
T KOG0318|consen 602 T 602 (603)
T ss_pred c
Confidence 4
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=427.14 Aligned_cols=578 Identities=19% Similarity=0.309 Sum_probs=447.6
Q ss_pred CCcceeeec--cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 353 LPKTVTRTL--NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 353 ~~~~~~~~~--~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
+.++...++ .+...|++++.||+|. ++++-...|...+-++.....+++++| ..+|.
T Consensus 42 LknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~ 100 (893)
T KOG0291|consen 42 LKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVG 100 (893)
T ss_pred ccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------cCccc
Confidence 344444444 4899999999999999 577778889999999988888876554 35899
Q ss_pred EEEEcCCCCeEEEEECCCeEEEEEccCCce-----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224 431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 505 (1120)
Q Consensus 431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~ 505 (1120)
|+.|||||+++|.|. .+.+.||....... .....++.||...|.++.|+.|.+ ++++||.|.++++|+++.-
T Consensus 101 ~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred eEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccc
Confidence 999999999999886 45699998765432 234456789999999999999999 8999999999999999876
Q ss_pred ce--eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-----eC---------CCCceeEEEEcC
Q 001224 506 AK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSA 569 (1120)
Q Consensus 506 ~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---------~~~~v~~~~~s~ 569 (1120)
+. .+.+.+|.+.|.+.-|. .+...+++.+.||.+.+|..........- .+ ....+....|..
T Consensus 178 k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k 255 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK 255 (893)
T ss_pred cccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence 65 56788999999886663 34467999999999999987632111100 00 000111111111
Q ss_pred CCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcE
Q 001224 570 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGI 648 (1120)
Q Consensus 570 ~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i 648 (1120)
.++.+-......+.+.+|++.-+.|++|-..|...+|++....+++.+....+ .|..++|+..|.+++.|+.. |.+
T Consensus 256 -~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 256 -TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQL 332 (893)
T ss_pred -EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceE
Confidence 11222222335788999999999999999999999999999999999986544 69999999999999998764 788
Q ss_pred EEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccC
Q 001224 649 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 728 (1120)
Q Consensus 649 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 728 (1120)
-||+..+.. .+
T Consensus 333 lVweWqsEs-YV-------------------------------------------------------------------- 343 (893)
T KOG0291|consen 333 LVWEWQSES-YV-------------------------------------------------------------------- 343 (893)
T ss_pred EEEEeeccc-ee--------------------------------------------------------------------
Confidence 888876541 11
Q ss_pred CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecC
Q 001224 729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 808 (1120)
Q Consensus 729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 808 (1120)
+..++|...+.+++++|||..+++|+.||.|+|||.
T Consensus 344 ----------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~---------------------- 379 (893)
T KOG0291|consen 344 ----------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT---------------------- 379 (893)
T ss_pred ----------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEec----------------------
Confidence 111358899999999999999999999999999886
Q ss_pred CCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcEEEEEeC
Q 001224 809 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMD 886 (1120)
Q Consensus 809 ~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~ 886 (1120)
.+|.+... +. .|...|+.+.|+..|+.+++.+ ||+|+.||+...+..+++..... ...|++..| .|.++.+|+.
T Consensus 380 ~SgfC~vT-Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~ 455 (893)
T KOG0291|consen 380 QSGFCFVT-FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQ 455 (893)
T ss_pred cCceEEEE-ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeecc
Confidence 34443322 22 3999999999999999999999 99999999999999999875443 467889998 8889988888
Q ss_pred CC-cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224 887 DS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 965 (1120)
Q Consensus 887 dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 965 (1120)
|. .|+||++++|+++..+.||.++|.+++|+|++..|+|++.|.+|++||+-..... ...+... ..++.++
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vs 527 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVS 527 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEE
Confidence 76 7999999999999999999999999999999999999999999999998763221 1222222 3579999
Q ss_pred EccCCcEEEE-EeCCeEEEEEcCCceeeeccccC------------------CCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224 966 FHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------------ESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus 966 fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~------------------~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
|+|||+.||+ .-||.|.+||...+..+..+... ......+.|++|+||.++++|+....|+
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence 9999999999 58999999999887665443211 1246789999999999999999999999
Q ss_pred EEEcCCcceeeeeCCCcc--------------------------------------cCC--------CCCCCCccceEEE
Q 001224 1027 VFSAANLKLRCRINPSAY--------------------------------------LPA--------GVSSSNVHPLVIA 1060 (1120)
Q Consensus 1027 iwd~~~~~~~~~~~~~~~--------------------------------------~~~--------g~~~~~v~~~~i~ 1060 (1120)
||++.++.++.+++.+.. +|+ .+....|.+.++.
T Consensus 608 iY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~ 687 (893)
T KOG0291|consen 608 IYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQ 687 (893)
T ss_pred EEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEE
Confidence 999999988887653221 110 0112245677999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1061 AHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
|+|+ |+-++.+++.| |.||.+.+.
T Consensus 688 fsPt-graFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 688 FSPT-GRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred ECCC-cCeeeeecccc-eEEEecCCc
Confidence 9995 88888888776 466666543
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-53 Score=419.61 Aligned_cols=375 Identities=20% Similarity=0.339 Sum_probs=299.2
Q ss_pred CCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC
Q 001224 347 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 426 (1120)
Q Consensus 347 ~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 426 (1120)
........++...+-+|.++|.|++|+|+|++ |++|+.|.++++||+.+...+. +.++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCc
Confidence 34455556666677789999999999999996 9999999999999999987766 488999
Q ss_pred CceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-----CCCceEEEEecCCCcEEEEE
Q 001224 427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 427 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----d~~~~~l~s~s~d~~i~vwd 501 (1120)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999987654 6889999999999965 455 699999999999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 581 (1120)
+..+.++..+.||+.+|+|++|-. + .++++|+.|++|++|+...+.....+.+|..+|..++.+.|-.
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~--------- 301 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV--------- 301 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh---------
Confidence 999999999999999999999832 3 4999999999999999999999999999999999888776532
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
|-+|.-|.+ +............ -.-.....-..+..|++|++|.++.+|+....
T Consensus 302 -------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---- 356 (480)
T KOG0271|consen 302 -------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---- 356 (480)
T ss_pred -------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----
Confidence 222221110 0000000000000 00000000111233333333333333332111
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
T Consensus 357 -------------------------------------------------------------------------------- 356 (480)
T KOG0271|consen 357 -------------------------------------------------------------------------------- 356 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
.+.+.. .
T Consensus 357 ----------------------------------------------------------------------kkpi~r-m-- 363 (480)
T KOG0271|consen 357 ----------------------------------------------------------------------KKPITR-M-- 363 (480)
T ss_pred ----------------------------------------------------------------------ccchhh-h--
Confidence 000100 1
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 899 (1120)
.+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++++.+
T Consensus 364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeee
Confidence 13888899999999999999999 99999999999999999999999999999999 99999999999999999999999
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 936 (1120)
+...+.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999995
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-48 Score=417.39 Aligned_cols=609 Identities=14% Similarity=0.212 Sum_probs=449.6
Q ss_pred CceEEEEe-cCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 366 SPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 366 ~v~~v~~s-pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
.+..+..+ ..|++ ++++.-..|.+||+++|+..... +...-...|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence 33333333 34774 33344478999999999544310 122334689999999999999999
Q ss_pred ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 524 (1120)
..||.|+||+..++.... ++.||...|+++.|...|. .|++||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875443 7999999999999999999 69999999999999999999999999999999987764
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 604 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 604 (1120)
. +..++++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.|+.+
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~ 213 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSEL 213 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCce
Confidence 4 337999999999999999999888888888888777777665 358999999999
Q ss_pred EEEECCCCc------------eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccc
Q 001224 605 KFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 672 (1120)
Q Consensus 605 ~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 672 (1120)
++|++.... ...++...+ ......++..++++++++-+.|..+.++.+.+..+..+.+.........
T Consensus 214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kk 292 (888)
T KOG0306|consen 214 KVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKK 292 (888)
T ss_pred EEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhh
Confidence 999983211 111121111 1234456777889999999999999999998875554433221000000
Q ss_pred cCCCCCCCcccchhhhHhhhhccccccccccccccCC---C-CCcccccCCC-cceeeccCCCcceeeecccCC-C-Ccc
Q 001224 673 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG---M-NGDVRSLADV-KPRITEESNDKSKVWKLTELS-E-PNQ 745 (1120)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~-~-~~~ 745 (1120)
... .. . ...+ +.....+...+...+.. . +.+....... ..++. -.++++..|.++... . +..
T Consensus 293 ka~-t~-e-~~~~-------v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~ 361 (888)
T KOG0306|consen 293 KAE-TE-E-NEDD-------VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEA 361 (888)
T ss_pred hcc-cc-c-cccc-------hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccc
Confidence 000 00 0 0000 00000000000000000 0 0111111122 23333 556778888777621 1 111
Q ss_pred ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224 746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 825 (1120)
Q Consensus 746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 825 (1120)
.+.-.+...+|...|.+++++.+...++++ .++.+++|+. .+.+++... ..+
T Consensus 362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~----------------------~t~kciRTi-----~~~ 413 (888)
T KOG0306|consen 362 DRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNR----------------------DTLKCIRTI-----TCG 413 (888)
T ss_pred cccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEc----------------------cCcceeEEe-----ccc
Confidence 111122225699999999999998755544 4557777765 444444332 344
Q ss_pred CccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-----ce
Q 001224 826 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DE 899 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~~ 899 (1120)
.+.+..|-|.++++++|. .|.+.+||+.+...+.+.++|.+.|..++.+| |++.+++|+.|.+|++||..- |.
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 788899999999999999 89999999999999999999999999999999 999999999999999999853 11
Q ss_pred eeEeec-------ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224 900 VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 900 ~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
..+.+. .-.+.|.|+.+||||++||.+=-|.+|+||-+++- ...-.+-||.- +|.++..|||+++
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-----KFflsLYGHkL---PV~smDIS~DSkl 564 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-----KFFLSLYGHKL---PVLSMDISPDSKL 564 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-----eeeeeeccccc---ceeEEeccCCcCe
Confidence 111111 13467999999999999999999999999999983 34555667764 8999999999999
Q ss_pred EEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224 973 FLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus 973 la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
+++ +.|+.|++|-++-|.|.+.+. +|...|.++.|-|+..++.+++.|+.|+-||-...+.+..+. ||+.
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~ 635 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHS 635 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchh
Confidence 999 499999999999999999998 899999999999999999999999999999999999998887 6655
Q ss_pred CCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
. |+ +++-+| +|.+++++|.|.+|++|.-..
T Consensus 636 e-v~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 636 E-VW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred e-ee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 5 77 788888 589999999999999999655
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-47 Score=393.14 Aligned_cols=537 Identities=16% Similarity=0.214 Sum_probs=421.1
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
.-+|...++-..|||.|-| +|+|...|+|+|||....+.+....|+ --.++|..++|++|++
T Consensus 55 YtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds~ 116 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDSK 116 (603)
T ss_pred eccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCCc
Confidence 3458999999999999996 999999999999999876655544443 3456999999999999
Q ss_pred eEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 440 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 440 ~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
+|+..++. |.+.+|| +|..+. ++.||...|++++|-|.-.. .++||++|++|.+|+=.--+...++..|.
T Consensus 117 RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hs 190 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHS 190 (603)
T ss_pred EEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccc
Confidence 99987643 3455555 444444 78999999999999998876 79999999999999966667777888999
Q ss_pred cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
..|.++.|+ |||.++++.+.||.|.+||-.+++....+. +|.+.|..++|+||++
T Consensus 191 kFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-------------------- 248 (603)
T KOG0318|consen 191 KFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-------------------- 248 (603)
T ss_pred cceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--------------------
Confidence 999999985 557899999999999999999988887776 5666666666666664
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 671 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 671 (1120)
.+++++.|.+++|||+.+.+++.++...... .....+-|. ...|++.+.+|+|.+++...+ ...+.+.+|...+.
T Consensus 249 -~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 249 -QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSIT 324 (603)
T ss_pred -eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheeccccccee
Confidence 7999999999999999999999998754331 122344554 668899999999999999998 48899999987654
Q ss_pred ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeecc
Q 001224 672 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 751 (1120)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 751 (1120)
. ...+++++++++++.||.|.-|+...+.....
T Consensus 325 a-----------------------------------------Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~------ 357 (603)
T KOG0318|consen 325 A-----------------------------------------LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL------ 357 (603)
T ss_pred E-----------------------------------------EEEcCCCCEEEeeccCceEEEEecCCcccccc------
Confidence 2 22456789999999999999999987543322
Q ss_pred CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEE
Q 001224 752 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 831 (1120)
Q Consensus 752 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~ 831 (1120)
.+.+|...|.+++.+..+. +++.+-|.++++.++....+.... .. .......+++
T Consensus 358 ~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~~la 412 (603)
T KOG0318|consen 358 AGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPKGLA 412 (603)
T ss_pred ccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCceeEE
Confidence 2245999999999988776 778888889988776332221100 00 0233445899
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee--Eeeccccc
Q 001224 832 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSK 909 (1120)
Q Consensus 832 ~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h~~ 909 (1120)
..+++.+++...++.|.+..-. ..+.+.. ..-...+++++| ++..+|+|+.||.|+||.+..+++. ..+..|.+
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~--~~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a 488 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQ--TKVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA 488 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecC--Ccceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence 9999988888887777776522 2223332 344578999999 9999999999999999999875533 35677999
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK 988 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~ 988 (1120)
+|++++||||+.+||++...+.+.+||+.+.+... ....-|. ..|.+++|+|+.+++|+| -|..|.||+++.
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 99999999999999999999999999999866522 1222233 379999999999999995 899999999986
Q ss_pred ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
-... .....+|...|+.+.|- |...|++.+.|..|++|.+.
T Consensus 562 P~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 562 PAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred hhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 5443 22234788889999997 45668888899999999864
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-46 Score=399.05 Aligned_cols=539 Identities=15% Similarity=0.237 Sum_probs=419.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
.+.|++||..++. ...+.|.++|+.+++... +.-.+...|.+++.||+|.+|++...+|
T Consensus 19 nl~ft~dG~sviS--PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 19 NLVFTKDGNSVIS--PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cEEECCCCCEEEe--ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCCC
Confidence 4789999986443 345899999998866432 1234677999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC--------ceeEEeeccccCeEE
Q 001224 449 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--------AKQYIFEGHEAPVYS 520 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~ 520 (1120)
...+-++.....+.. +. ...+|.++.|||||+ ++|.| ..+.+.||..... ...+++.+|...|.+
T Consensus 78 ~~~lvs~~~r~Vlh~-f~---fk~~v~~i~fSPng~--~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~s 150 (893)
T KOG0291|consen 78 RALLVSLLSRSVLHR-FN---FKRGVGAIKFSPNGK--FFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITS 150 (893)
T ss_pred cEEEEecccceeeEE-Ee---ecCccceEEECCCCc--EEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeE
Confidence 998888877554431 12 357899999999999 34444 4578999987542 234577899999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
+.|+. |.++|++|+.|-++++|+++..+. ...+.+|...|-..-|..+. ..+++.
T Consensus 151 i~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~---------------------~~l~tv 207 (893)
T KOG0291|consen 151 IDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS---------------------LDLYTV 207 (893)
T ss_pred EEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc---------------------ceEEEE
Confidence 99854 447999999999999999987666 33445555555555554444 469999
Q ss_pred eCCCeEEEEECCC-----------------------Cce-----eE----EEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224 599 GDDFSIKFWDMDS-----------------------VQL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 599 ~~dg~i~iwd~~~-----------------------~~~-----~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
+.||.+.+|.... ++. .. ..-.......+++.+|++..+.|++|-..|
T Consensus 208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG 287 (893)
T KOG0291|consen 208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG 287 (893)
T ss_pred ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC
Confidence 9999999998761 111 00 000111124577888888888888888888
Q ss_pred cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224 647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 726 (1120)
Q Consensus 647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 726 (1120)
.+.++.+..- .++..+
T Consensus 288 ~f~LyelP~f-~lih~L--------------------------------------------------------------- 303 (893)
T KOG0291|consen 288 EFGLYELPDF-NLIHSL--------------------------------------------------------------- 303 (893)
T ss_pred eeEEEecCCc-eEEEEe---------------------------------------------------------------
Confidence 8888876543 222111
Q ss_pred cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC-ceEEEeeecccccCCCCccccccCcee
Q 001224 727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQL 805 (1120)
Q Consensus 727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~ 805 (1120)
.....+|..++|+..|..|+.++.. |.+.||+++.+.+
T Consensus 304 ---------------------------Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-------------- 342 (893)
T KOG0291|consen 304 ---------------------------SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-------------- 342 (893)
T ss_pred ---------------------------ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--------------
Confidence 0134688999999999999999886 9999999865432
Q ss_pred ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEE
Q 001224 806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 884 (1120)
Q Consensus 806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 884 (1120)
.++..+|...+++++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+.+.|+. .++.+++.
T Consensus 343 -----------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llss 410 (893)
T KOG0291|consen 343 -----------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSS 410 (893)
T ss_pred -----------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEe
Confidence 122245999999999999999999999 99999999999999999999999999999999 99999999
Q ss_pred eCCCcEEEEEeecceeeEeecccc-cceEEEEEccCCCEEEEEeCCC-CEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224 885 MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 962 (1120)
Q Consensus 885 ~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg-~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~ 962 (1120)
+-||+|+.||+...+..+++.... -...|++..|.|..++.|+.|. .|.||++++|+ .+..+.||.. +|.
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PVs 482 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PVS 482 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cce
Confidence 999999999999999999987643 3356788888899999999886 59999999965 5778888874 999
Q ss_pred EEEEccCCcEEEE-EeCCeEEEEEcCCce-eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 963 RVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 963 ~~~fspdg~~la~-~~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+++|+|+|..|++ +-|++|++||+-... .+.++ .+...+..++|+|||+-|++++.||.|.+||...+.....+.
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9999999999999 589999999986542 23333 347889999999999999999999999999999888776554
Q ss_pred CCcccCCC----------CCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1041 PSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1041 ~~~~~~~g----------~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
....+..| ++.......+++|++ ||..+++|+..+.|.++++.++-
T Consensus 560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred chhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhh
Confidence 33222222 122223345899999 79999999999999999998876
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-47 Score=407.17 Aligned_cols=513 Identities=13% Similarity=0.208 Sum_probs=403.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
.+..|+|++-+||.- +||+|..||.|+||+..++..+. .+.||..+|+++.|+..|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence 446899999999987 69999999999999999886655 3889999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 522 (1120)
+||.|+.|.+||+-...-+ ..++||.+.|+..-|..+.+ ++++.|.|+.|++||+.+..|..+...|.+.|++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 9999999999999875433 36999999999999998777 899999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEecCCCCCc------------eee-eCCCCceeEEEEcCCCCeEEec------------
Q 001224 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------------VDY-EAPGRWCTTMAYSADGTRTYQG------------ 577 (1120)
Q Consensus 523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~-~~~~~~v~~~~~s~~g~~~~~~------------ 577 (1120)
+.. ..+++++.|+.+++|++...... -++ ....+....+...++++.++-.
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 864 47999999999999998321100 000 1111122223333333311000
Q ss_pred -------------------------------------------ccccceeEEEEcCCCC---EEEEEeCCCeEEEEECCC
Q 001224 578 -------------------------------------------FRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDMDS 611 (1120)
Q Consensus 578 -------------------------------------------~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 611 (1120)
.....+..+++.|.++ .|+. -.++++..|.+..
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLEN 353 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEecc
Confidence 0011334455555433 2333 5677888887765
Q ss_pred -Cc------eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccc
Q 001224 612 -VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 684 (1120)
Q Consensus 612 -~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1120)
+. .+..+...+|...|+++++|.+...+++|+ .+.+.+|+..+. ++++++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-kciRTi--------------------- 410 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-KCIRTI--------------------- 410 (888)
T ss_pred CCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-ceeEEe---------------------
Confidence 21 123344445566899999999887777765 478999998776 444333
Q ss_pred hhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEE
Q 001224 685 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 764 (1120)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 764 (1120)
....+.+..
T Consensus 411 -----------------------------------------------------------------------~~~y~l~~~ 419 (888)
T KOG0306|consen 411 -----------------------------------------------------------------------TCGYILASK 419 (888)
T ss_pred -----------------------------------------------------------------------ccccEEEEE
Confidence 123677888
Q ss_pred EcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-
Q 001224 765 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 843 (1120)
Q Consensus 765 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s- 843 (1120)
|-|.+++++.|..+|.+.+||+.. ...+.. .. .|++.+.+++.+||++.+++|+
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEecC
Confidence 999999999999999999998732 221111 12 3999999999999999999999
Q ss_pred CCcEEEEEcCC-----Ccee--------eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc
Q 001224 844 GGKISLFNMMT-----FKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 910 (1120)
Q Consensus 844 dg~i~vwd~~~-----~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~ 910 (1120)
|.+|++||..- +... +++. -...|.|+.+|| |+++||++--|.+|+||-+++.+..-.+.||.-+
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 99999999741 1111 1222 346799999999 9999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCc
Q 001224 911 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL 989 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~ 989 (1120)
|.||..|||++.++|||.|..|+||-++-|.+ .+.+-+|.+ +|.++.|-|+...+.+ |.|+.|+-||..+.
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 99999999999999999999999999998775 444455554 8999999998887777 69999999999999
Q ss_pred eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
+++..+. +|...|++++.+|+|.++++++.|.+|++|.-....++
T Consensus 625 e~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 625 EEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred hhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 9998876 89999999999999999999999999999987664433
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-50 Score=396.44 Aligned_cols=364 Identities=19% Similarity=0.247 Sum_probs=298.1
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.||.++|.|++|||+|++||+|+.|.++++||+.+.. +.++..+|..-|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 478999999999999999999999999999999999976 4458999999999999999999 69999999999999
Q ss_pred ECCCCcee-EEeeccccCeEEEeecc---CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 501 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 501 d~~~~~~~-~~~~~h~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
|.++|+++ ..+.+|...|++++|.| .+...+|++++.||.|+|||+..+.+...+.+|...|+++.|.-+|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g----- 259 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG----- 259 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence 99998876 68999999999999865 3556799999999999999999999999999999999999997776
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++++|+.|++|++|+...|.+...+++|.+ .|+.++.+-|- . ++++
T Consensus 260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~--------------LRtg 305 (480)
T KOG0271|consen 260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-V--------------LRTG 305 (480)
T ss_pred -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-h--------------hhcc
Confidence 599999999999999999999999998877 78888876542 1 1122
Q ss_pred chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224 657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 736 (1120)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 736 (1120)
+|.+.+
T Consensus 306 -----------------------af~~t~--------------------------------------------------- 311 (480)
T KOG0271|consen 306 -----------------------AFDHTG--------------------------------------------------- 311 (480)
T ss_pred -----------------------cccccc---------------------------------------------------
Confidence 111111
Q ss_pred cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224 737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 816 (1120)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 816 (1120)
+..-..++. + .++ +.
T Consensus 312 ---------------------------------~~~~~~se~--------~-------~~A---------------l~-- 326 (480)
T KOG0271|consen 312 ---------------------------------RKPKSFSEE--------Q-------KKA---------------LE-- 326 (480)
T ss_pred ---------------------------------ccCCChHHH--------H-------HHH---------------HH--
Confidence 000000000 0 000 00
Q ss_pred cCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 817 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 817 ~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
.. ..+.-..+..+++|+ |.++.+|+-.. .+++..+.+|...|+.+.||| |++++|+++-|.+|++|+
T Consensus 327 ------rY----~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 327 ------RY----EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD 395 (480)
T ss_pred ------HH----HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence 00 000112346788888 78899998754 457788899999999999999 999999999999999999
Q ss_pred eecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
..+|+.+..|+||-++|+.++|+.|.++|+||+.|.++++|++.+.+. ..
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~------------------------- 445 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQ------------------------- 445 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cc-------------------------
Confidence 999999999999999999999999999999999999999999988321 11
Q ss_pred EEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 975 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 975 ~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
...+|..+|.++.|+|||+.+++|+.|..+++|.
T Consensus 446 ---------------------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 ---------------------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ---------------------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1237888888888888888888888888888884
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.1e-45 Score=385.66 Aligned_cols=595 Identities=15% Similarity=0.191 Sum_probs=402.0
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE--C
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY--S 446 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--~ 446 (1120)
.++-+|-.. ++|. -....|.+||++..++-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 455556544 2322 223688999998765544 5778889999999999999999974 6
Q ss_pred CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--CCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224 447 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 524 (1120)
...++||++.....+. ++..|.-.|+|++|+|.++ |+++.+. |-.|.+||++.......-+ -...|..++|
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f- 173 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF- 173 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE-
Confidence 6789999999877565 6889999999999999999 6777665 4467889987654433322 3466888887
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCCce---eeeCCCC--------------------ceeEEEEcCCCCe-------E
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGR--------------------WCTTMAYSADGTR-------T 574 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--------------------~v~~~~~s~~g~~-------~ 574 (1120)
+++|.|+++.+. ..|++|.++...... .+.+... .-...+++..|.. +
T Consensus 174 -sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRL 251 (1080)
T KOG1408|consen 174 -SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRL 251 (1080)
T ss_pred -ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhh
Confidence 567789998874 899999987655211 0111000 0122333333320 0
Q ss_pred ---EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC----------------------CCCCCcCe
Q 001224 575 ---YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------------GGLPASPR 629 (1120)
Q Consensus 575 ---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~~~v~~ 629 (1120)
+...+...-.|++++. +++++|+.+|.|++|+..+-.-+.++... .......+
T Consensus 252 LDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA 329 (1080)
T KOG1408|consen 252 LDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA 329 (1080)
T ss_pred hhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE
Confidence 1112222334455554 68999999999999998776544444311 11123457
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCC
Q 001224 630 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG 709 (1120)
Q Consensus 630 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1120)
+.|++....|.+...|..+++||+++-.+.-+...- .
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~---l---------------------------------------- 366 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM---L---------------------------------------- 366 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeee---e----------------------------------------
Confidence 889999999999999999999999876333221100 0
Q ss_pred CCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224 710 MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 789 (1120)
Q Consensus 710 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 789 (1120)
-..-.+|+++...... |...- +.-|.+. ++++++|++|++|++...
T Consensus 367 -------------------yHS~ciW~Ve~~p~nv-----------~~~~~---aclp~~c-F~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 367 -------------------YHSACIWDVENLPCNV-----------HSPTA---ACLPRGC-FTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred -------------------eccceeeeeccccccc-----------cCccc---ccCCccc-eeEecCCCcEEEeecccc
Confidence 0112344444321000 00000 1112222 445555555555554331
Q ss_pred ccCCC--Ccccccc--Cc--------eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCc
Q 001224 790 ERNSS--GKATASV--AP--------QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 856 (1120)
Q Consensus 790 ~~~~~--~~~~~~~--~~--------~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~ 856 (1120)
..+.. .+++... .+ .+.|...+-.-............+.++++||+|++||+|. .|+++||++...+
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 10000 0000000 00 0001111110000000112567899999999999999999 7999999999999
Q ss_pred eeeeecCCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEEccCC--CEEEEEeCCCC
Q 001224 857 TMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQ 931 (1120)
Q Consensus 857 ~~~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~ 931 (1120)
....+.+|..+|.|+.||-. ..++||+++.|..|+|||+.. ..++.++.+|++.|+++.|.-.| ..++++|.|+.
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 98999999999999999952 357999999999999999875 46788999999999999999777 78999999997
Q ss_pred EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeecccc-CCCCCCeeEEEE
Q 001224 932 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHATF 1009 (1120)
Q Consensus 932 v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~ 1009 (1120)
|.+- .... .....+-....+......+..++..|..+++++ +.|+.|+||++.+++..+.|.. ++|.+..-.+..
T Consensus 573 imFr-~~qk--~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l 649 (1080)
T KOG1408|consen 573 IMFR-VNQK--ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL 649 (1080)
T ss_pred hhee-hhcc--ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE
Confidence 7543 3221 001111111111112246789999999999999 6999999999999999999875 346788889999
Q ss_pred CCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1010 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1010 s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
.|.|-|||+.+.|.++.++|..+|+++.+.. ||... |. .+.|.+ |.+.|++++.||.|+||.++..
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchh
Confidence 9999999999999999999999999998877 54333 44 899999 7899999999999999998753
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.8e-40 Score=349.18 Aligned_cols=556 Identities=13% Similarity=0.150 Sum_probs=374.5
Q ss_pred eeecc-CCCCceEEEEecCCCeEEEEEe--CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 358 TRTLN-QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 358 ~~~~~-h~~~v~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
.+++. |..+++|++||++|+| +|+|- ..-.++||++.....+.. +..|...|+|++|
T Consensus 71 ~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaF 130 (1080)
T KOG1408|consen 71 SHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAF 130 (1080)
T ss_pred hheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeee
Confidence 34444 7889999999999996 89986 456799999998776653 7789999999999
Q ss_pred cCCCCeEEEEEC--CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE--
Q 001224 435 SPDGSLFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-- 510 (1120)
Q Consensus 435 spdg~~las~~~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~-- 510 (1120)
+|.++|+++.+. |..|.+||++.+.... -..-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 131 sp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~Kykdpi 203 (1080)
T KOG1408|consen 131 SPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPI 203 (1080)
T ss_pred cCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCc
Confidence 999999998764 5578889887654332 122356899999999999 788877 57899999886641110
Q ss_pred -----------e------------------------eccc-----------------cCeEEEeeccCCCceEEEEEecC
Q 001224 511 -----------F------------------------EGHE-----------------APVYSVCPHHKENIQFIFSTALD 538 (1120)
Q Consensus 511 -----------~------------------------~~h~-----------------~~v~~~~~~~~~~~~~l~s~~~d 538 (1120)
+ .||- ..-.|+|. +.++|+.|+.+
T Consensus 204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~ 279 (1080)
T KOG1408|consen 204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAK 279 (1080)
T ss_pred cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeecc
Confidence 0 0110 01123333 22689999999
Q ss_pred CeEEEEecCCCCCceeeeCCCC---ceeEEEEcCCCCeEEeccccc---ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001224 539 GKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612 (1120)
Q Consensus 539 g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 612 (1120)
|.|++|+..+..-..++..... .+..+. .-..+..+.... ....+.|++....|.+...|..++|||++.-
T Consensus 280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~---q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 280 GMVRLFNPETLDYAGTLPRSHALGSDTANLS---QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred ceeeecCcchhhhccccccccccccchhhcc---cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 9999998877554444332111 111110 001111111111 2335678888899999999999999999864
Q ss_pred ceeEEEe-cCCCCCCcCeEEEcC-----------CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224 613 QLLTSID-ADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680 (1120)
Q Consensus 613 ~~~~~~~-~~~~~~~v~~~~~s~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1120)
..+.... .-.|...|+++.--| -...+++++.|++|++|++..+.. -..+.......
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils~---------- 425 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILSA---------- 425 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccchh----------
Confidence 4332110 001111233333222 023488899999999999875310 00000000000
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224 681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 760 (1120)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 760 (1120)
..+-.-..|++..+....+.....+.. .........+
T Consensus 426 ----------------------------------------~l~ki~y~d~~~q~~~d~~~~~fdka~---~s~~d~r~G~ 462 (1080)
T KOG1408|consen 426 ----------------------------------------NLSKIPYEDSTQQIMHDASAGIFDKAL---VSTCDSRFGF 462 (1080)
T ss_pred ----------------------------------------hhhcCccccCchhhhhhccCCcccccc---hhhcCcccce
Confidence 000000000110000000000000000 0001245678
Q ss_pred EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCC
Q 001224 761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDS 837 (1120)
Q Consensus 761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~ 837 (1120)
++++++|+|++|+++...|.++||+++.... . .....|+..|.|+.+|. ..+
T Consensus 463 R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------~--~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 463 RALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------T--CFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred EEEEECCCcceecccCccCceEEEEehhhhh-----------------------h--hheecccceeEEEeecCchhhhH
Confidence 9999999999999999999999999853211 0 11123999999999984 357
Q ss_pred EEEEEe-CCcEEEEEcC-CCceeeeecCCCCCeEEEEEecCCC--cEEEEEeCCCcEEEEEeecceeeEeecc-----cc
Q 001224 838 YVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HS 908 (1120)
Q Consensus 838 ~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~~-----h~ 908 (1120)
+||+++ |.-|.|||+. ...+++++.+|...|+++.|.. .| ..+++++.|..|.+--.+.......+.. ..
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 899999 8899999997 4566788999999999999998 54 6778888898876544332111122221 22
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 987 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~ 987 (1120)
..++.|+..|..+++++++.|+.|+||+++.++. .+.+.+.....+..-.+...|.|.|||+ +.|+++.++|.-
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence 4688999999999999999999999999999775 3344444444457788999999999999 599999999999
Q ss_pred CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
+|+|+.... +|...|+.+.|++|.+.|++++.||.|+||.+....
T Consensus 672 sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 672 SGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred cchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 999999877 999999999999999999999999999999987543
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-38 Score=341.65 Aligned_cols=584 Identities=15% Similarity=0.156 Sum_probs=431.5
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 449 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~ 449 (1120)
..+..-|..++++.+.+++..+||.+.-..+.. -..+...|.|++=..+- +.+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~--vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDY--VYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCce--EEEecC-cE
Confidence 556666777899999999999999987666552 34577899999865544 444432 33
Q ss_pred EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ce----eEEeeccccCeEEEeec
Q 001224 450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~----~~~~~~h~~~v~~~~~~ 524 (1120)
|.+|. .|+.++. .+.+|.+.|.-+. +-|. .++++..++.+.||+...+ +. +..++...+.|++++ |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 4444443 4567777787765 4466 6899999999999998874 22 122233334488775 5
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 604 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 604 (1120)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-= ..++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------DVVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------DVVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------eEEEEeccCceE
Confidence 66555678999999999999999999999999888888887766643 368889999999
Q ss_pred EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCE-EEEEECCCcEEEEEccCcchhhhhcc-cccccccccCCCCCCCcc
Q 001224 605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 682 (1120)
Q Consensus 605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 682 (1120)
.++|++.++.+.+++... +.|++++|.-||.. +++|+..|.+-+||++.. +...... .|...
T Consensus 227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~s------------- 290 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGS------------- 290 (910)
T ss_pred EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCC-------------
Confidence 999999999999998653 37999999999875 556666799999999876 3333332 33221
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224 683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 762 (1120)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 762 (1120)
-....+.+....+++++.|+.+++|-.+.+..... .+... .+|..+..+
T Consensus 291 ----------------------------v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR--~LR~R-~GHs~Pp~~ 339 (910)
T KOG1539|consen 291 ----------------------------VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR--LLRSR-GGHSAPPSC 339 (910)
T ss_pred ----------------------------cccceecCCCceEeeccCCCceeEEEeeCCCCcch--heeec-cCCCCCchh
Confidence 12234556778899999999999998775433222 22222 579999999
Q ss_pred EEEc-CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC----C
Q 001224 763 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S 837 (1120)
Q Consensus 763 l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~----~ 837 (1120)
+.|- .+|..+++++.|++.+.+++..+.++..-.. ......+..+.........-.+|..+++.... .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 9998 7899999999999999988765544322111 11111111110000000023345566654321 1
Q ss_pred EEEEEe--CCcEEEEEcCCCce-eeeec-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee---cc
Q 001224 838 YVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG 906 (1120)
Q Consensus 838 ~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l---~~ 906 (1120)
-++++. +...+.|++..... ...+. .....+++++.++ .|++.+.|+..|.|-+|++++|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 244443 57799999986544 22332 2346799999999 9999999999999999999999888888 58
Q ss_pred cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001224 907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 985 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d 985 (1120)
|.++|++++...-++.++|++.||.+++||...... +....- ...+..+..+.....+++ ..|-.|.++|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l----~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRL----GSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeecc----CCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 999999999988889999999999999999988442 222211 136788888988888888 5788999999
Q ss_pred cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
+.+.+.++.+. +|.+.|++++|||||++|++++.|++|++||+.++.++..+. .. ..++++.|+| .
T Consensus 563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n 628 (910)
T KOG1539|consen 563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N 628 (910)
T ss_pred chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence 99999999988 899999999999999999999999999999999999998765 11 2345899999 5
Q ss_pred CCEEEEEeCC-CcEEEEec
Q 001224 1066 PNEFALGLSD-GGVHVFEP 1083 (1120)
Q Consensus 1066 ~~~l~s~~~D-g~v~vW~~ 1083 (1120)
|++|+|+..| ..|++|.=
T Consensus 629 gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CCEEEEEEecCceEEEEEc
Confidence 9999999999 78999973
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-39 Score=329.23 Aligned_cols=353 Identities=18% Similarity=0.326 Sum_probs=280.5
Q ss_pred CCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe--eceee-eccCCCCcccccccccCCCCce
Q 001224 353 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL--RNFKV-WDLGACSMPLQAALVKDPGVSV 429 (1120)
Q Consensus 353 ~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~h~~~V 429 (1120)
.+....+.+.|..+|.+.+|+|-..-++++|+.|-+.++|++........ ..+|- .+... .-......|
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~--------~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGG--------KSVPSNKDV 238 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhc--------ccCCccCCc
Confidence 35566677789999999999998776799999999999999974111110 00000 00000 001123579
Q ss_pred EEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 430 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 430 ~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
++++|+.+|..||+|+.||.++||+..++. + .+|..|.++|.++.|+.+|. ||++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~---~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-I---STLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-h---hhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998764 2 26889999999999999999 89999999999999999999988
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~ 589 (1120)
.+.-|..+-..+.|-..
T Consensus 313 ~f~~~s~~~lDVdW~~~--------------------------------------------------------------- 329 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSN--------------------------------------------------------------- 329 (524)
T ss_pred eeeeccCCccceEEecC---------------------------------------------------------------
Confidence 88877766333443111
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccc
Q 001224 590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 669 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 669 (1120)
..+++.+.||.|+++.+....++.++.+| ...|.++.|.|.|.+|++++.|++++||+.... .....+
T Consensus 330 ---~~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l------ 397 (524)
T KOG0273|consen 330 ---DEFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL------ 397 (524)
T ss_pred ---ceEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh------
Confidence 13666777777777777778888888875 458999999999999999999999999997655 222222
Q ss_pred ccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceee
Q 001224 670 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749 (1120)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 749 (1120)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 750 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 750 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
.+|...|..+.|+|+|.. .| +
T Consensus 398 ----~~Hskei~t~~wsp~g~v---------------------------------~~----------------n------ 418 (524)
T KOG0273|consen 398 ----QAHSKEIYTIKWSPTGPV---------------------------------TS----------------N------ 418 (524)
T ss_pred ----hhhccceeeEeecCCCCc---------------------------------cC----------------C------
Confidence 237778888899988751 00 0
Q ss_pred EEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc
Q 001224 830 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 908 (1120)
Q Consensus 830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 908 (1120)
...+..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +++++|+|+.||.|.+|+.+++++.+...+-
T Consensus 419 ---~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~- 493 (524)
T KOG0273|consen 419 ---PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT- 493 (524)
T ss_pred ---CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-
Confidence 01344566666 99999999999999999999999999999999 9999999999999999999999999988864
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
+.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 559999999999999999999999998864
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=334.46 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=259.1
Q ss_pred ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 469 ~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
|-+.+|..+.|+.|++ .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..+++|+.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4567999999999999 79999999999999999999999999999999999999986567899999999999999999
Q ss_pred CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcC
Q 001224 549 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 628 (1120)
Q Consensus 549 ~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 628 (1120)
..++..+.+|...|..++|.|+|+ +|++++.|.+-++||+.++..+....+| ...|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence 999999999888777777777665 8999999999999999999888777665 45899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001224 629 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 708 (1120)
Q Consensus 629 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1120)
+++|.+||.++++|+.|..-+|||++++. ++-.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~---------------------------------------------- 340 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMF---------------------------------------------- 340 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCc-EEEE----------------------------------------------
Confidence 99999999999999999999999998871 1100
Q ss_pred CCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224 709 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 788 (1120)
Q Consensus 709 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 788 (1120)
T Consensus 341 -------------------------------------------------------------------------------- 340 (459)
T KOG0272|consen 341 -------------------------------------------------------------------------------- 340 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCC
Q 001224 789 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 867 (1120)
Q Consensus 789 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 867 (1120)
+. +|..+|.+++|+|+|..+|+|+ |++++|||++..+.+.++.+|.+-
T Consensus 341 -----------------------------L~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 341 -----------------------------LA--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred -----------------------------ec--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 11 2778888899999999999998 999999999988889999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224 868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 936 (1120)
|+.|.|+|+.|.+|++++.|++++||...++.+++.+.||.+.|.++.+++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-39 Score=352.17 Aligned_cols=276 Identities=18% Similarity=0.275 Sum_probs=235.1
Q ss_pred CCCCCcceeeecc-CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe---eceeee---------ccCCCCcc
Q 001224 350 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVW---------DLGACSMP 416 (1120)
Q Consensus 350 ~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~---~~~~~~---------~~~~~~~~ 416 (1120)
.+.+|.-+.+++. -...++|..||+|++ ++|.|..|..|++|.+...+.... ..+.-. ++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 4455666666666 568999999999999 799999999999999985331110 000001 11122222
Q ss_pred cccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224 417 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 496 (1120)
Q Consensus 417 ~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~ 496 (1120)
.....+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++- .+.||..+|+++.|+|-|- |+||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999987654 6889999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
.++|......+++.+.+|.+.|.|+.|||+. .++++||.|.+||+||+.++..+..+.+|..+|.+++|+|+|+
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr---- 590 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR---- 590 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc----
Confidence 9999999999999999999999999998765 6999999999999999999998888888888888777777775
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+|++|++||.|.+||+.+++.+..+.+| ...|.++.|+.||..|++|+.|++|++||+...
T Consensus 591 -----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 -----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 8999999999999999999999999877 558999999999999999999999999998654
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-40 Score=329.55 Aligned_cols=284 Identities=19% Similarity=0.305 Sum_probs=257.9
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC--C
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 438 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g 438 (1120)
++...+|..+.||+|++ +||||+-+|.+.||+..+...+. ++.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45678999999999999 59999999999999999987666 48999999999999995 6
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
.-||+|+.||++++|++++...+. .+.+|...|..++|.|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999977665 7999999999999999999 89999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.+++|++ ||.++++|+.|..-++||++++.++..+.+|...|.+++|+|+|. .|++|
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg 363 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG 363 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence 9999864 568999999999999999999999999999999888888888875 79999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCC
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 677 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1120)
|.|++++|||++..+.+..+.+|.. .|+.+.|+| .|.+|++++.|+++++|...+. .+++.+.
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa------------- 427 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA------------- 427 (459)
T ss_pred CCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence 9999999999999999988887754 799999999 8999999999999999988766 4554443
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccc
Q 001224 678 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 757 (1120)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 757 (1120)
+|+
T Consensus 428 -----------------------------------------------------------------------------GHe 430 (459)
T KOG0272|consen 428 -----------------------------------------------------------------------------GHE 430 (459)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 488
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEee
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWK 785 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 785 (1120)
+.|.++.+++++..+++++.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 8899999999999999999999999984
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=303.18 Aligned_cols=290 Identities=19% Similarity=0.290 Sum_probs=257.0
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
+-+|...|.++.|++|+++ +++++.||.++|||.-+..+.+..+ -....|..++|+|.|+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~haip-------------------l~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHAIP-------------------LPSSWVMTCAYSPSGN 110 (343)
T ss_pred ecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeEEe-------------------cCceeEEEEEECCCCC
Confidence 4459999999999999996 9999999999999999887776433 3466899999999999
Q ss_pred eEEEEECCCeEEEEEccCC--c-eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224 440 LFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 516 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 516 (1120)
++|+|+-|....||++.+. + ..+...++.+|.+-+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.||.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcc
Confidence 9999999999999999854 1 2334457899999999999999887 99999999999999999999999999999
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|.++.+.|+ +++.+++|+.|+..++||++.+.+.++|.+|...|.++.|.|+|. -++
T Consensus 188 DV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------afa 245 (343)
T KOG0286|consen 188 DVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AFA 245 (343)
T ss_pred cEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------eee
Confidence 9999998774 668999999999999999999999999999998888887777775 699
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCC
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 676 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1120)
+|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +....+
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------------- 311 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------------- 311 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------
Confidence 999999999999999999999987777778999999999999999999999999997655 111111
Q ss_pred CCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccc
Q 001224 677 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 756 (1120)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 756 (1120)
.+|
T Consensus 312 -----------------------------------------------------------------------------~GH 314 (343)
T KOG0286|consen 312 -----------------------------------------------------------------------------AGH 314 (343)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 248
Q ss_pred cccEEEEEEcCCCceEEEeccCceEEEee
Q 001224 757 ATKISRLIFTNSGNAILALASNAIHLLWK 785 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 785 (1120)
..+|.++..+|||..+++++-|..++||.
T Consensus 315 eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999993
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-36 Score=320.30 Aligned_cols=465 Identities=17% Similarity=0.257 Sum_probs=350.7
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
.+.+.|.++.|+|...+ +.++-..|.|.|||.++...+.. +.-..-+|.+..|-+.-+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 48899999999999997 67778889999999999887754 22245589999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCeEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYS 520 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~ 520 (1120)
++|+.|..|+||++.+++.+. .+..|.+-|.+++..|... +++|+|+|-+|++||++.+ .+.++|.||...|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999988666 7899999999999999999 8999999999999999865 678899999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
++|.|..+ +.+++++.|++|++|.+....+..++.+|...|.++.+-+.|. ..+|++|++
T Consensus 146 v~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaD 205 (794)
T KOG0276|consen 146 VAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGAD 205 (794)
T ss_pred EEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCC
Confidence 99988654 7999999999999999999999999999999999998877764 258999999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224 601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680 (1120)
Q Consensus 601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1120)
|.+|+|||..+..|++++.+|.+ .|..+.|+|.-..+++|+.||+++||+..+- +....+.
T Consensus 206 D~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn---------------- 266 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN---------------- 266 (794)
T ss_pred CceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh----------------
Confidence 99999999999999999987755 7999999999999999999999999987655 2222221
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224 681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 760 (1120)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 760 (1120)
-...++
T Consensus 267 --------------------------------------------------------------------------~gleRv 272 (794)
T KOG0276|consen 267 --------------------------------------------------------------------------YGLERV 272 (794)
T ss_pred --------------------------------------------------------------------------cCCceE
Confidence 022456
Q ss_pred EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEE
Q 001224 761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 840 (1120)
Q Consensus 761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 840 (1120)
.+++..+.+..++.|..+|.+.+- + ......+.+++.|+.+-
T Consensus 273 W~I~~~k~~~~i~vG~Deg~i~v~-l-------------------------------------greeP~vsMd~~gKIiw 314 (794)
T KOG0276|consen 273 WCIAAHKGDGKIAVGFDEGSVTVK-L-------------------------------------GREEPAVSMDSNGKIIW 314 (794)
T ss_pred EEEeecCCCCeEEEeccCCcEEEE-c-------------------------------------cCCCCceeecCCccEEE
Confidence 666666777777777777776651 1 11222344455554443
Q ss_pred EEeC--CcEEEE------EcCCCcee----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc
Q 001224 841 SASG--GKISLF------NMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 908 (1120)
Q Consensus 841 ~~sd--g~i~vw------d~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 908 (1120)
+... -.+.+- ++..|+.+ +.+-...-....++-+| +|+++++++ ||.-.||..-..+ ..+.
T Consensus 315 a~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~f 387 (794)
T KOG0276|consen 315 AVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAF 387 (794)
T ss_pred EcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hccc
Confidence 3321 111111 22233322 11111122345678889 898887665 8888888743222 1244
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~ 988 (1120)
+.-....|++|.+..+.--.++.|+++ +..+..+... .-....+--.|.+|.+..++.+++||.++
T Consensus 388 G~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~ 453 (794)
T KOG0276|consen 388 GSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWES 453 (794)
T ss_pred ccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEccc
Confidence 556678899998888888778889988 3322211100 01123333456777778999999999999
Q ss_pred ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
++.++.+.. ....+.|+.+|.+++.++.|. .+|+.
T Consensus 454 ~~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 454 GELVRRIEV-----TSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ceEEEEEee-----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence 999988753 356789999999999888664 44443
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=322.54 Aligned_cols=553 Identities=13% Similarity=0.193 Sum_probs=411.6
Q ss_pred ceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 356 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 356 ~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
++...- .+.+.|+|++=+-+-- .+++ ...|.+|.- |+.+.. +..+|...|.-+.
T Consensus 67 ~ll~vs~~lp~~I~alas~~~~v---y~A~-g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~- 121 (910)
T KOG1539|consen 67 NLLFVSKPLPDKITALASDKDYV---YVAS-GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL- 121 (910)
T ss_pred EEEEecCCCCCceEEEEecCceE---EEec-CcEEEEEEc--cceEEE------------------EeccccceEEEEe-
Confidence 444444 3788999988766643 2322 255666643 433321 3556776777665
Q ss_pred cCCCCeEEEEECCCeEEEEEccCC-ceee-eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 435 SPDGSLFGVAYSRHIVQIYSYHGG-DEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 435 spdg~~las~~~dg~v~iwd~~~~-~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
+=|.+++++..++.+.||+..++ .... +..-+....+.|+++.- |..----++.|+.+|.+.+|++++++.+++++
T Consensus 122 -~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~ 199 (910)
T KOG1539|consen 122 -PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ 199 (910)
T ss_pred -eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEec
Confidence 44889999999999999999884 2111 11112222233777653 43211138999999999999999999999999
Q ss_pred ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
++...|+++.-+ +--+.++.|..+|+|.+++++..+.+.++....+.|++++|..||.
T Consensus 200 ~~~s~IT~ieqs--PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~-------------------- 257 (910)
T KOG1539|consen 200 EFFSRITAIEQS--PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN-------------------- 257 (910)
T ss_pred ccccceeEeccC--CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------------------
Confidence 999999998854 4446899999999999999999999999998889999999999997
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc---chhhhhccccccc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYD 669 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~ 669 (1120)
..+++|+..|.+.+||++..+.+..+. ..|...+....|-|....+++++.|+.+++|-..++ .+.++...||..+
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~-nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTR-NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeee-ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 468888889999999999888777665 222446888999999999999999999998865543 2345555666665
Q ss_pred ccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceee
Q 001224 670 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749 (1120)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 749 (1120)
.. ++..++ ..+..+.+++.|++.+.+++...........+
T Consensus 337 p~--------~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 337 PS--------CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred ch--------heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 43 222222 45678889999999988887643322222110
Q ss_pred cc-----------CCccccccEEEEEEcCCC----ceEEEec-cCceEEEeeecccccCCCCccccccCceeecCCCCCc
Q 001224 750 RL-----------PENLRATKISRLIFTNSG----NAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 813 (1120)
Q Consensus 750 ~~-----------~~~~~~~~i~~l~~s~~g----~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~ 813 (1120)
.. .......+|..+++.... ..++++. .+...+.|+++... .|+.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-------------------~G~~ 437 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-------------------SGRH 437 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-------------------cccE
Confidence 00 111233456666665421 2244444 45778888875431 1111
Q ss_pred ccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeee---cCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224 814 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSS 889 (1120)
Q Consensus 814 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~ 889 (1120)
....-........+++++.++.|++.+.|. .|.|-+|++++|-....+ ..|..+|+.++... -++.+++++.+|.
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGI 516 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcce
Confidence 110000011456789999999999999998 899999999999888888 58999999999988 7889999999999
Q ss_pred EEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224 890 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 890 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd 969 (1120)
+.+||..+..++..++- ...++++..+.....++.+..|-.|+++|+.+ .+....+.||.. .|++++||||
T Consensus 517 lkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-----~kvvR~f~gh~n---ritd~~FS~D 587 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-----RKVVREFWGHGN---RITDMTFSPD 587 (910)
T ss_pred EEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchh-----hhhhHHhhcccc---ceeeeEeCCC
Confidence 99999998887777763 45688899998889999999999999999998 345677788875 9999999999
Q ss_pred CcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-CcEEEEEc
Q 001224 970 QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1030 (1120)
Q Consensus 970 g~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~ 1030 (1120)
|++|++ +.|++|++||+.++.++..+.. ..+++++.|||+|.+||++..| .-|++|-=
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999 5899999999999999988764 6799999999999999999998 56999963
No 23
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-35 Score=317.74 Aligned_cols=601 Identities=14% Similarity=0.172 Sum_probs=408.5
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC---eEEEEE
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAY 445 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~ 445 (1120)
...|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence 34556665 355544 5799999987763333 4899999999999999888 899999
Q ss_pred CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc--eeEEeeccccCeEEEe-
Q 001224 446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVC- 522 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~- 522 (1120)
.|+.|++|.++... +.....+.+|...+.|+. ..-. .....+.|+++.+||.+..+ +...+.-..+.+..+|
T Consensus 77 sD~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRDEY-LIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEeehh-eEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 99999999999433 556667888776666654 2222 22223789999999986555 3334433333444444
Q ss_pred -eccCCCceEEEEEecCCeEEEEecCCC--CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 523 -PHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 523 -~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
+.+.++.-.++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +.-+|+++|
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S 213 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS 213 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence 334333334555666777777754432 34457889999999999987664 223688899
Q ss_pred CCCeEEEEECCCCc---------------------eeEEEe--------cCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224 600 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 650 (1120)
.|..||||.+.-+. ....+. ..+|...|.++.|+|.+..|++++.|.++.+
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 99999999874322 010111 1245678999999999999999999999999
Q ss_pred EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 730 (1120)
Q Consensus 651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 730 (1120)
|...+..-... -...-+. .+ + ..+--....+++++..+++-+..|
T Consensus 294 W~pd~~tGiWv-~~vRlGe--------------~g------g--------------~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 294 WKPDENTGIWV-DVVRLGE--------------VG------G--------------SAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred EecCCccceEE-EEEEeec--------------cc------c--------------cccceeeEEEcCCCCEEEEecccC
Confidence 97654311100 0000000 00 0 000012345677888999999999
Q ss_pred cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224 731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810 (1120)
Q Consensus 731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 810 (1120)
..++|.... ....... ..-.+|...|+.++|.|.|.++++++.|.+-|++---..+. -|..
T Consensus 339 g~hlWkt~d---~~~w~~~-~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wHE-- 399 (764)
T KOG1063|consen 339 GFHLWKTKD---KTFWTQE-PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWHE-- 399 (764)
T ss_pred cEEEEeccC---ccceeec-cccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------ceee--
Confidence 999999322 1111111 11257999999999999999999999999988875321000 0110
Q ss_pred CCcccccCCCCCCCCCccEEEEccCCCEEEEEeC-CcEEEEEcC------------------------------------
Q 001224 811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM------------------------------------ 853 (1120)
Q Consensus 811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sd-g~i~vwd~~------------------------------------ 853 (1120)
+ -...-|....+|++|-+....+++|.| ..+|+|+..
T Consensus 400 ---i---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 400 ---I---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ---e---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 0 011127778888888775556666664 557777731
Q ss_pred -------CCce---------------------------------eeeecCCCCCeEEEEEecCCCcEEEEEeCC-----C
Q 001224 854 -------TFKT---------------------------------MATFMPPPPAATFLAFHPQDNNIIAIGMDD-----S 888 (1120)
Q Consensus 854 -------~~~~---------------------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g 888 (1120)
+|.. +..+-+|..+|.+++.+| +++++|+++.. .
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHA 552 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccce
Confidence 0000 011335778899999999 99999999854 3
Q ss_pred cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 889 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 889 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
.|++|+..+......+.+|+-.|+.|+|||||++|++++.|+++.+|+.......... ......|.. -|-++.|+|
T Consensus 553 vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~p 628 (764)
T KOG1063|consen 553 VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSP 628 (764)
T ss_pred EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccce---EEEEcccCc
Confidence 6899999999888999999999999999999999999999999999998654433222 223444443 578899999
Q ss_pred CCcEEEE-EeCCeEEEEEcCCc--eeeeccccCCCCCCeeEEEECC-----CCcEEEEEEcCCcEEEEEcCC-------c
Q 001224 969 DQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAAN-------L 1033 (1120)
Q Consensus 969 dg~~la~-~~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~~~Dg~v~iwd~~~-------~ 1033 (1120)
++.++++ +.|++|++|..... +.+..+....+..+|+.++|.| .+..+++|-+.|.|.+|.... +
T Consensus 629 de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~ 708 (764)
T KOG1063|consen 629 DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG 708 (764)
T ss_pred ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce
Confidence 9999999 59999999999888 6666655557899999999987 233678888999999999651 1
Q ss_pred ceeeeeCCCcccCCCCCCCCccceEEEecCCC-------C--CEEEEEeCCCcEEEEecC
Q 001224 1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE-------P--NEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d-------~--~~l~s~~~Dg~v~vW~~~ 1084 (1120)
............ +| ...|. .+.|.|.. . ..|++|++|.+++++++.
T Consensus 709 ~~~~~~~l~~~~--~~-~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 709 TFNLDTRLCATI--GP-DSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeecccccccc--Ch-HHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111111111111 11 22244 78888741 2 247999999999999874
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.9e-35 Score=315.84 Aligned_cols=604 Identities=13% Similarity=0.138 Sum_probs=401.7
Q ss_pred eeeeccCCCCceEEEEecCCC---eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~---~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
+..+-+|..+|+|+.|-|+.+ + +++|+.||.|++|.++........ .+.+|... +++
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~--~~c 106 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKE--CVC 106 (764)
T ss_pred EEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCccee--EEE
Confidence 344445999999999999886 4 899999999999999843333211 24556544 444
Q ss_pred EcCCCCeEEEEECCCeEEEEEccCCceeeeeeeeccc--ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC--ceeE
Q 001224 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQY 509 (1120)
Q Consensus 434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~--~~~~ 509 (1120)
++.......+.+.|+++.+||.+..+.. ....++-- ..--.|+++.++.+..+++.|+.+..|.++.-.++ +.+.
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 4444334444478999999999655421 11122211 22335677778666557888888888988876644 4456
Q ss_pred EeeccccCeEEEeeccCCC-ceEEEEEecCCeEEEEecCCCCCcee------eeC-CCCceeEE----EEcCCCCeEEec
Q 001224 510 IFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVD------YEA-PGRWCTTM----AYSADGTRTYQG 577 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~-~~~~v~~~----~~s~~g~~~~~~ 577 (1120)
.+.||.+.|.+++|..... .-+|++++.|..||+|.+.-...... ... ...++..+ .+.-.-..++.|
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 8899999999999865543 46889999999999998754331110 000 00111100 000000022334
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEE--ecC-CCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSI--DAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
|.+ -+..+.|+|.+..|++++.|.++.+|...+.. .+... ... +.........|+|++..+++-+..|..++|.
T Consensus 266 HeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 266 HED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred ccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 443 67778888888889999999999999887652 22222 111 1223467899999999999999999999998
Q ss_pred ccCcc--hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224 653 TSDGI--RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 730 (1120)
Q Consensus 653 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 730 (1120)
..+.. .....+.||...+. ++...|.|+++++.+.|.
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~-----------------------------------------dv~W~psGeflLsvs~DQ 383 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVK-----------------------------------------DVDWDPSGEFLLSVSLDQ 383 (764)
T ss_pred ccCccceeeccccccccccce-----------------------------------------eeeecCCCCEEEEecccc
Confidence 33321 12233344444332 344567789999999999
Q ss_pred cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccc----------------cCCC
Q 001224 731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE----------------RNSS 794 (1120)
Q Consensus 731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~----------------~~~~ 794 (1120)
+-|+|---..+. ....+.-| +.|...+++++|-+....+++++....+|+|+....- ..++
T Consensus 384 TTRlFa~wg~q~--~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 384 TTRLFARWGRQQ--EWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred ceeeeccccccc--ceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence 999986552111 12222222 3588889999999876778888889999999875320 0000
Q ss_pred Ccccccc-----------------------C------ceeecCCCCC-cccc-----cCCCCCCCCCccEEEEccCCCEE
Q 001224 795 GKATASV-----------------------A------PQLWQPPSGI-MMTN-----DVTDSNPEEAVPCFALSKNDSYV 839 (1120)
Q Consensus 795 ~~~~~~~-----------------------~------~~~w~~~~g~-~~~~-----~~~~~~~~~~v~~l~~s~d~~~l 839 (1120)
+...... + ..+..+.... +... ..+-.+|...|.+++.+|+++++
T Consensus 461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnli 540 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLI 540 (764)
T ss_pred ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEE
Confidence 0000000 0 0011111110 0000 00113599999999999999999
Q ss_pred EEEe-C-----CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce----eeEeeccccc
Q 001224 840 MSAS-G-----GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE----VKSKLKGHSK 909 (1120)
Q Consensus 840 ~~~s-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~----~~~~l~~h~~ 909 (1120)
|++. . ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|+++.+|...... .....+.|+.
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR 619 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR 619 (764)
T ss_pred eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccce
Confidence 9986 2 3499999999999999999999999999999 99999999999999999986432 1234678999
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-----CcEEEEE-eCCeEEE
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVV-HETQLAI 983 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-----g~~la~~-~d~~v~i 983 (1120)
-|++..|+||+.+++|+|+|.+|+||............... ......|+++++.|- +..+++| ..|.|.+
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~----~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC----LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch----hccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 99999999999999999999999999988762111111011 111247888888772 2255667 7799999
Q ss_pred EEcCCcee----------eeccccCCCCCCeeEEEECCC----------CcEEEEEEcCCcEEEEEcC
Q 001224 984 FETTKLEC----------VKQWVPRESSAPITHATFSCD----------SQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 984 ~d~~~~~~----------~~~~~~~~h~~~v~~l~~s~d----------g~~l~s~~~Dg~v~iwd~~ 1031 (1120)
|....-.. .+.-...+|.+.|..+.|+|. ...|++|++|..++|++++
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 696 WRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99651111 011112256889999999975 2357999999999999864
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-36 Score=288.39 Aligned_cols=256 Identities=20% Similarity=0.288 Sum_probs=218.7
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
.+|++.|+.++..+.+..++++++.|.++.+|++.......-... ..+.||...|..++.++||++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~--------------r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV--------------RRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCcee--------------eeeeccceEecceEEccCCce
Confidence 349999999999999888999999999999999976432221111 148899999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc--ccCe
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAPV 518 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--~~~v 518 (1120)
.++++.|+++++||+.+++..+ .|.||...|.+++|++|++ .+++|+.|++|++||+.. .+..++..+ .+.|
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWV 151 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCCCcCcE
Confidence 9999999999999999997555 6889999999999999999 499999999999999664 444454433 7899
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.++++|||. ..++|
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lcasG 210 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCASG 210 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEecC
Confidence 999999998778999999999999999999998888899988888888888876 68889
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhh
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 662 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 662 (1120)
+.||.+.+||++.++.+..+.+. ..|.+++|+|+...|+.+.. ..|+|||+.++ .++..
T Consensus 211 gkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~ 269 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE 269 (315)
T ss_pred CCCceEEEEEccCCceeEeccCC---CeEeeEEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence 99999999999999998888643 46999999999877777665 56999999887 44433
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-35 Score=306.52 Aligned_cols=471 Identities=17% Similarity=0.210 Sum_probs=351.0
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
+..+...|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45588999999999999999999999999999999988776 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
..+++.++.|.+|.+.|.+++.||.. .++++++.|-+|++||++.. .+.+++.+|.+.|..++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999998876 69999999999999999875 46678999999999999999876
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCcch
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
+.+++++-|++|++|++.+..+..++++|. ..|+|+.|-+ |..+|++|++|.+++|||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 679999999999999999999999998664 4899999987 4579999999999999999887 7
Q ss_pred hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224 659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 738 (1120)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 738 (1120)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 7777755
Q ss_pred cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224 739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 818 (1120)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 818 (1120)
|...|..+.|+|.-..++++++||+++||.-.+-.. .. .+
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l----------------------E~-tL 265 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL----------------------EK-TL 265 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcceeh----------------------hh-hh
Confidence 566778889999999999999999999997532111 00 01
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEE----EEeCCCcEEEEE
Q 001224 819 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA----IGMDDSSIQIYN 894 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la----sg~~dg~v~vwd 894 (1120)
. ..-+.+.|++-.+.+..+++|.|....+..+....+...+.... .+.|+. .+.... +.+.++ +
T Consensus 266 n--~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~g----KIiwa~-~~ei~~~~~ks~~~~~-----e 333 (794)
T KOG0276|consen 266 N--YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNG----KIIWAV-HSEIQAVNLKSVGAQK-----E 333 (794)
T ss_pred h--cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCc----cEEEEc-CceeeeeeceeccCcc-----c
Confidence 1 14567999999999999999997666666665555444443111 122322 111111 111111 2
Q ss_pred eecceeeE----eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224 895 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 970 (1120)
Q Consensus 895 ~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg 970 (1120)
+..|+.+. .+-.-.-.-..++-||+|++++.|+ ||.-+||..-.... . ..+.-...+|++|.
T Consensus 334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn----------K---~fG~~~eFvw~~ds 399 (794)
T KOG0276|consen 334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRN----------K---AFGSGLEFVWAADS 399 (794)
T ss_pred ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhh----------c---ccccceeEEEcCCC
Confidence 33333221 1111111123577889998887665 88888987433111 1 11345788999997
Q ss_pred cEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224 971 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus 971 ~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
...++ -+++.|+++ ++.+..+.+.+..+.. +--.|. |+....++.+++||.+++++++++.
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~~~e------~i~gg~-Llg~~ss~~~~fydW~~~~lVrrI~--------- 461 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMSAE------GIFGGP-LLGVRSSDFLCFYDWESGELVRRIE--------- 461 (794)
T ss_pred CeEEEEecCCceEEE--ecceecccccccccee------eecCCc-eEEEEeCCeEEEEEcccceEEEEEe---------
Confidence 77776 578999999 7777777776443211 111344 4445557889999999999999998
Q ss_pred CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
+.+-.+.|+. +|.+++.++ |.+.++..+..
T Consensus 462 ----v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n~ 491 (794)
T KOG0276|consen 462 ----VTSKHVYWSD-NGELVAIAG-DDSFYILKFNA 491 (794)
T ss_pred ----eccceeEEec-CCCEEEEEe-cCceeEEEecH
Confidence 4455788986 466776666 55566666543
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=283.89 Aligned_cols=287 Identities=17% Similarity=0.290 Sum_probs=244.0
Q ss_pred eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 542 (1120)
Q Consensus 463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 542 (1120)
...+|+||.+.|.++.|++|.+ .+++++.||.+.|||.-+....+.+.-....|..++|+|+ |+++++|+.|+...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS--g~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS--GNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC--CCeEEecCcCceeE
Confidence 3357999999999999999999 6999999999999999999999988888899999998655 47999999999999
Q ss_pred EEecCCCC------CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 001224 543 AWLYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT 616 (1120)
Q Consensus 543 iwd~~~~~------~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 616 (1120)
||++.+.. ....+.+|.+.+.+..|..|+. |++++.|.+..+||+++++.+.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEE
Confidence 99998652 2335677777777777777654 9999999999999999999999
Q ss_pred EEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224 617 SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 695 (1120)
Q Consensus 617 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1120)
.+.+|.+ .|.+++++| +++.+++|+-|+..++||++.+ ...+.|.
T Consensus 181 ~f~GH~g--DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~------------------------------- 226 (343)
T KOG0286|consen 181 VFHGHTG--DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFE------------------------------- 226 (343)
T ss_pred EecCCcc--cEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeec-------------------------------
Confidence 9986654 799999999 9999999999999999999877 3333221
Q ss_pred ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEe
Q 001224 696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 775 (1120)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 775 (1120)
T Consensus 227 -------------------------------------------------------------------------------- 226 (343)
T KOG0286|consen 227 -------------------------------------------------------------------------------- 226 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC
Q 001224 776 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 854 (1120)
Q Consensus 776 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~ 854 (1120)
+|+..|.+++|.|+|.-+++|+ |++.++||++.
T Consensus 227 ----------------------------------------------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 227 ----------------------------------------------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ----------------------------------------------ccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 1566666666667777777777 67777777776
Q ss_pred CceeeeecC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCE
Q 001224 855 FKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 932 (1120)
Q Consensus 855 ~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v 932 (1120)
.+.+..+.. ...+|++++||. .|++|.+|..|..+.+||.-.++.+..|.||.++|+++..+|||.-|+||+.|.++
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 666666652 245799999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q 001224 933 CVWS 936 (1120)
Q Consensus 933 ~iWd 936 (1120)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=283.35 Aligned_cols=296 Identities=15% Similarity=0.228 Sum_probs=249.3
Q ss_pred ccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224 754 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 832 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~ 832 (1120)
.+|.+.|..++..+. ...+++++.|..+.+|++... |.+.|..... +.+ |...|..+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 469999999999887 556788889999999998543 2233433332 444 9999999999
Q ss_pred ccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc--cc
Q 001224 833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SK 909 (1120)
Q Consensus 833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~ 909 (1120)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|.+|++... +..++..+ .+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE 149 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence 99999999999 99999999999999999999999999999999 8999999999999999998754 44444433 78
Q ss_pred ceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001224 910 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 986 (1120)
Q Consensus 910 ~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~ 986 (1120)
-|+|+.|+|+ ..+|++++.|++|++||+++.+ ....+.||.. .++.+++||||.+.++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 7899999999999999999843 4555666664 8999999999999999 59999999999
Q ss_pred CCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCC
Q 001224 987 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1066 (1120)
Q Consensus 987 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~ 1066 (1120)
+.++.+..+ +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+....+. .....+..++++|++ ||
T Consensus 222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s-~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPS-SKAGDPICLSLAWSA-DG 295 (315)
T ss_pred cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccc-cccCCcEEEEEEEcC-CC
Confidence 999997766 578999999999997777755 466799999999999988875544442 234447788999999 79
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 001224 1067 NEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1067 ~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
..|+.|-.|+.|++|.+..
T Consensus 296 ~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEeeecCCcEEEEEeec
Confidence 9999999999999998753
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-35 Score=290.41 Aligned_cols=339 Identities=17% Similarity=0.248 Sum_probs=284.1
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+..|++.|.+++.+|+.+++|+|+.|....||++.+|.... .+.+|.+.|+++.|+.||. +|+||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 377899999999999999999999999999999999998554 7899999999999999999 89999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
...++.....+...-..+.=++|||.. .+|++|+.||.+-+|.+.+......+.+|..++++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 999999998887666778788998744 7999999999999999998877788888888888888887776
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
.++++..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+++.+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 699999999999999999999998875443 45788999999999999999999888876555 111
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
....+
T Consensus 269 ~~~n~--------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 269 NCNNG--------------------------------------------------------------------------- 273 (399)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
.+..+... .
T Consensus 274 ---------------------------~~~~l~~~------------------------------------------~-- 282 (399)
T KOG0296|consen 274 ---------------------------TVPELKPS------------------------------------------Q-- 282 (399)
T ss_pred ---------------------------CCcccccc------------------------------------------c--
Confidence 00000000 0
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 899 (1120)
......|.++.++..-.+.|+|+ ||+|.|||+...+....+. |..+|+.+.|-+ ..+|++++.||.|+.||.++|+
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 00233455556666777889999 9999999999866655554 888899999987 5689999999999999999999
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
++.++.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999864
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-34 Score=310.46 Aligned_cols=489 Identities=17% Similarity=0.276 Sum_probs=342.6
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
....|..++|+|...+ +.++-..|.|++||.+=+..+.+ +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4678999999999996 88889999999999998887764 788999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 522 (1120)
||+.|..|+||++++.+++- +|.||-+-|..+.|.+.-. +++++|+|.+|+||++++++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999977554 8999999999999999888 899999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC-CCceeEEE-----E-cCCC--CeEEecccccceeEEEEcCCCC
Q 001224 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMA-----Y-SADG--TRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~-----~-s~~g--~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
|+|..| .++++|.|.+||+||+...+....-.+. ...+.... | .+|- +.++.||. ..++-++|+|.-.
T Consensus 143 FhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP 219 (1202)
T ss_pred cCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence 998874 8999999999999999754332211110 00000000 0 0111 14455554 4788899999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccccc
Q 001224 594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 673 (1120)
Q Consensus 594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 673 (1120)
.+++|++|..|++|.+...+....-...+|.+.|.++-|+|...++++.+.|++|++||+... ..++.++
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfr--------- 289 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFR--------- 289 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeee---------
Confidence 999999999999999876553333233455668999999999999999999999999998755 2222221
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224 674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 753 (1120)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 753 (1120)
T Consensus 290 -------------------------------------------------------------------------------- 289 (1202)
T KOG0292|consen 290 -------------------------------------------------------------------------------- 289 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
....+...++.+|..+ +++++.|+-+.||.++. ..+ +.++
T Consensus 290 -rendRFW~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erp--a~~v- 329 (1202)
T KOG0292|consen 290 -RENDRFWILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERP--AYAV- 329 (1202)
T ss_pred -ccCCeEEEEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCc--eEEE-
Confidence 1335667788899998 55566666667776621 122 2333
Q ss_pred cCCCEEEEEeCCcEEEEEcCCCcee--eeecCC---CCCeEEEEEecCCCcEEEEEeCC-CcEEEEEeecceee-----E
Q 001224 834 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGMDD-SSIQIYNVRVDEVK-----S 902 (1120)
Q Consensus 834 ~d~~~l~~~sdg~i~vwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~lasg~~d-g~v~vwd~~~~~~~-----~ 902 (1120)
++..+....|..|+-+|+.+.+.. ..++.. ..++.++.++|..+..|++...| |..-++.+.+.... .
T Consensus 330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 234455555889999999874432 334332 35789999999555555554433 34445544332100 0
Q ss_pred eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE
Q 001224 903 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 982 (1120)
Q Consensus 903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~ 982 (1120)
..++ ....++-.+. +++.+---.+..+.+-++..... +.+... ..+..+-+...|.+|+. ....|.
T Consensus 409 ~~k~--tG~~a~fvar-Nrfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~ 474 (1202)
T KOG0292|consen 409 VKKG--TGEGALFVAR-NRFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVT 474 (1202)
T ss_pred hhcC--CCCceEEEEe-cceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEE
Confidence 1111 1122222222 22333222345566666554221 111111 13345556666665554 456899
Q ss_pred EEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 983 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 983 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
+||+.....+..+. -..|..+.||+|..+++--+ -.+|.|.+
T Consensus 475 lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred EEEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 99999998888876 56899999999998776554 34566665
No 31
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=289.60 Aligned_cols=511 Identities=19% Similarity=0.246 Sum_probs=367.6
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCc--------EEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD--------IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 427 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 427 (1120)
..+...+|+..|.|++.+||.- ++++|...|+ |+|||..+-..++ ++..-..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~ 155 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDR 155 (626)
T ss_pred hcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeee-------------------eeccccc
Confidence 4566788999999999999988 4888877663 9999987766665 3555667
Q ss_pred ceEEEEEcC--CCCeEEEE--ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224 428 SVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 503 (1120)
Q Consensus 428 ~V~~l~~sp--dg~~las~--~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~ 503 (1120)
.|.|++||+ .|.+|+.. +.+..+.+||+..+..... ...-...|...+|.|.+.. ++++++ .+.+..|+.+
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~ 230 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLR 230 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEcc
Confidence 899999999 45666654 4566799999998776553 3334568999999999987 566665 5789999999
Q ss_pred CCceeEE---eecc-ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224 504 NGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 579 (1120)
Q Consensus 504 ~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 579 (1120)
.+...++ ++.+ ...|.|++|.++. -+++|..+|.|.+|+............|.+.|.+++...+|.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt------- 300 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT------- 300 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-------
Confidence 8876653 3333 3668999986554 389999999999999977665555558888899998888887
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224 580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 659 (1120)
Q Consensus 580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 659 (1120)
|++|+.|..|..|| ..-+.+...+.......++.++=...+ +++|+..+.|..=.+.++..
T Consensus 301 ---------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~- 361 (626)
T KOG2106|consen 301 ---------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFT- 361 (626)
T ss_pred ---------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCce-
Confidence 88899999999999 454555555555555567666544333 66776655554333332210
Q ss_pred hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224 660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 739 (1120)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 739 (1120)
.
T Consensus 362 -----------------------~-------------------------------------------------------- 362 (626)
T KOG2106|consen 362 -----------------------L-------------------------------------------------------- 362 (626)
T ss_pred -----------------------E--------------------------------------------------------
Confidence 0
Q ss_pred CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224 740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819 (1120)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 819 (1120)
...+|......++.+|+...+++++.|+.+++|+-.. .+|...
T Consensus 363 ------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~---------- 405 (626)
T KOG2106|consen 363 ------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI---------- 405 (626)
T ss_pred ------------EEEecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE----------
Confidence 0033667888899999999999999999999997210 123221
Q ss_pred CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
...++.|+.|+|.| .+|.|. .|...+.|.++...+. +.....++++|+|+| +|.+||.|+.|+.|+||.+..+
T Consensus 406 ---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 406 ---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCC
Confidence 45678899999999 899998 8999999999855444 443478899999999 9999999999999999998753
Q ss_pred e-eeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 899 E-VKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 899 ~-~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
. ..... +.|.++|+.+.||+|+++|.+-+.|-.|..|.... -+.. .++..+.|....-.| |
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~--------------ts~kDvkW~t~~c~l--G 542 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQI--------------TSVKDVKWATYTCTL--G 542 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Cccc--------------ceecceeeeeeEEEE--E
Confidence 2 22222 33458999999999999999999999999993322 1110 012333332111100 0
Q ss_pred eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224 977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus 977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
..+ ....|...|..++-+.+.+++|+|.+.|.|++|...--+..+... .-.+|++. +.
T Consensus 543 ----F~v------------~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h----e~~ghs~~-vt- 600 (626)
T KOG2106|consen 543 ----FEV------------FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH----EYGGHSSH-VT- 600 (626)
T ss_pred ----EEE------------ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce----eeccccce-eE-
Confidence 000 113567788888999999999999999999999976544443211 22244333 54
Q ss_pred eEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1057 LVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1057 ~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
.++|.-.| ..|++.+.|.+|..|++
T Consensus 601 -~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 601 -NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred -EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 79999855 56666669999999997
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-35 Score=290.42 Aligned_cols=273 Identities=17% Similarity=0.280 Sum_probs=238.1
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
...+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+... .+.||++.|..|+|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 345667999999999999988 79999999999999999999855 4899999999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 516 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 516 (1120)
.|++||+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++.++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999873 234447889999999999999998 799999999999999999999999999999
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|..+.. ..||.++++++.|.+|++|-+.+..+...+..|...|.+++|.|....--.....+. ...+.++.
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~ 308 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG 308 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence 9998885 678899999999999999999999999999999999999999887641100000000 01346899
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 664 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 664 (1120)
+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+++. ++++.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 999999999999999999999997755 8999999999999999999999999999888 5555554
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=269.59 Aligned_cols=229 Identities=20% Similarity=0.296 Sum_probs=188.7
Q ss_pred eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccC
Q 001224 378 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 457 (1120)
Q Consensus 378 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~ 457 (1120)
-||++++.|.+|++|...+|.+..+ +....+.|+.+...||+++||+++.. .|++||+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 3899999999999999999998864 44456789999999999999999865 599999999
Q ss_pred CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec
Q 001224 458 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 537 (1120)
Q Consensus 458 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 537 (1120)
+..- +..++.+|.+.|+++.|-.||+ .++|||+||+++|||++...+.+.++ |..+|++++.+|.. ..|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8754 5668999999999999999999 89999999999999999977777776 77999999987655 57999999
Q ss_pred CCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---
Q 001224 538 DGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--- 613 (1120)
Q Consensus 538 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 613 (1120)
+|.|++||+....+...+.. .... +..+.+.|+|..++++...|..++|++-++.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~---------------------i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTS---------------------IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcc---------------------eeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 99999999987655443322 2233 4445555555689999999999999987654
Q ss_pred ---eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 614 ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 614 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
++..++.|. ..+..+.+|||+++|++++.|.+++||+..+
T Consensus 204 ~l~P~~k~~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 204 ELEPVHKFQAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceEhhheeccc--ceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 344455443 4688999999999999999999999998654
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=262.79 Aligned_cols=295 Identities=14% Similarity=0.265 Sum_probs=242.8
Q ss_pred eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCcee
Q 001224 486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCT 563 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~ 563 (1120)
.+|+++|.|.+||+|...+|.|.++++...+.|..+++.+ ++..|++++. ..||+||+++..+ +.++.+|.+.|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 4899999999999999999999999998889999999854 5567777764 7899999998654 567777777777
Q ss_pred EEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224 564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
.+.|..+|+ ++++|++||+++|||++...+...++.. .+|+++..+|+...|++|.
T Consensus 88 aVgF~~dgr---------------------WMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 88 AVGFQCDGR---------------------WMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred EEEEeecCe---------------------EEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec
Confidence 777766665 8999999999999999997776666533 4799999999999999999
Q ss_pred CCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcce
Q 001224 644 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 723 (1120)
Q Consensus 644 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 723 (1120)
.+|.|++||+... .+...+
T Consensus 144 qsg~irvWDl~~~-~c~~~l------------------------------------------------------------ 162 (311)
T KOG0315|consen 144 QSGNIRVWDLGEN-SCTHEL------------------------------------------------------------ 162 (311)
T ss_pred CCCcEEEEEccCC-cccccc------------------------------------------------------------
Confidence 9999999999765 121111
Q ss_pred eeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCc
Q 001224 724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 803 (1120)
Q Consensus 724 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 803 (1120)
.| .....|.++.+.|||++++++...|..++|++-.....
T Consensus 163 ---------------------------iP--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------- 202 (311)
T KOG0315|consen 163 ---------------------------IP--EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------- 202 (311)
T ss_pred ---------------------------CC--CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------
Confidence 11 13467889999999999999999999999998542211
Q ss_pred eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCC-ceeeeecCCCCCeEEEEEecCCCcEE
Q 001224 804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNII 881 (1120)
Q Consensus 804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~l 881 (1120)
+.......++ .|...+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|..-+..++||. |++||
T Consensus 203 ------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Yl 273 (311)
T KOG0315|consen 203 ------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYL 273 (311)
T ss_pred ------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEE
Confidence 1111111122 3889999999999999999998 999999999987 55677889999999999999 99999
Q ss_pred EEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224 882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 882 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 917 (1120)
++|+.|+.+++|++..++.++...+|.....|++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999888887764
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=285.31 Aligned_cols=301 Identities=22% Similarity=0.327 Sum_probs=267.7
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|..+|+.+-|.|+-..+++++.|++|++||..+++..+ .|+||.+.|..|+|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 477899999999999999999999999999999999999755 7999999999999999999 89999999999999
Q ss_pred ECCC-CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224 501 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 579 (1120)
Q Consensus 501 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 579 (1120)
|..+ .++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|++.++-++.++.+|..+|..+....||.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt------- 248 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT------- 248 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence 9987 78889999999999999998765 6999999999999999999999999999999888888888775
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224 580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 659 (1120)
Q Consensus 580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 659 (1120)
.+++++.|.+|++|-+.++++...+..|.+ .|.|++|.|...+ .. +
T Consensus 249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~----------i------ 294 (406)
T KOG0295|consen 249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PS----------I------ 294 (406)
T ss_pred --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cc----------h------
Confidence 789999999999999999988888887766 6788888775321 00 0
Q ss_pred hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224 660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 739 (1120)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 739 (1120)
.
T Consensus 295 ----------------------~--------------------------------------------------------- 295 (406)
T KOG0295|consen 295 ----------------------S--------------------------------------------------------- 295 (406)
T ss_pred ----------------------h---------------------------------------------------------
Confidence 0
Q ss_pred CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224 740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819 (1120)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 819 (1120)
-+++
T Consensus 296 --------------------------------~at~-------------------------------------------- 299 (406)
T KOG0295|consen 296 --------------------------------EATG-------------------------------------------- 299 (406)
T ss_pred --------------------------------hccC--------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
..+ .+.++.+++ |++|++||+.++.++.++.+|...|..++|+| +|+||+++.+|+++++||++++
T Consensus 300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 000 345788888 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
++..++..|..-|+++.|+.+..+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999963
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.8e-33 Score=275.45 Aligned_cols=331 Identities=15% Similarity=0.182 Sum_probs=261.9
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+..|++.|.+++.+|+.+ |++||+.|..-.||+..+|+... .+.+|++.|+++.||.|
T Consensus 58 ~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshd 117 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHD 117 (399)
T ss_pred eehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccC
Confidence 34556999999999999776 79999999999999999999766 38899999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
|.+||+|+.+|.|+||+..++.... .+...-+.|.=+.|.|-+. +|+.|+.||.+.+|.+.++...+.+.||..+
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence 9999999999999999999998665 4445567788899999888 8999999999999999998888999999999
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
+++=+|.| +|+.++++..||+|++|+..+..+...+.... .....++.++..+..++.
T Consensus 193 ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--------------------~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 193 CTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--------------------GLELPCISLNLAGSTLTK 250 (399)
T ss_pred cccccccC--CCceEEEEecCceEEEEecCCCceeEEecccc--------------------cCcCCccccccccceeEe
Confidence 99988854 57999999999999999999987766554322 113334445555557888
Q ss_pred EeCCCeEEEEECCCCceeEEEecCC---------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224 598 AGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 668 (1120)
Q Consensus 598 ~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 668 (1120)
|+.++.+++-+..+|+.+....+.. ....|..+.++..-.+.|+|+-||+|.|||+...
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~------------ 318 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS------------ 318 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc------------
Confidence 8899999998888888776665210 0111222233333444555555555555554321
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224 669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 748 (1120)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 748 (1120)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224 749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 828 (1120)
Q Consensus 749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 828 (1120)
++.. . ..|...|.
T Consensus 319 ---------------------------------------------------------------~~R~--~--c~he~~V~ 331 (399)
T KOG0296|consen 319 ---------------------------------------------------------------TLRH--I--CEHEDGVT 331 (399)
T ss_pred ---------------------------------------------------------------hhhe--e--ccCCCceE
Confidence 0000 0 01677788
Q ss_pred EEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 829 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
.+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||+..
T Consensus 332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 888888 56777777 99999999999999999999999999999999 99999999999999999864
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=270.29 Aligned_cols=297 Identities=20% Similarity=0.322 Sum_probs=241.5
Q ss_pred ccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 418 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 418 ~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
....+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .++++|.|++|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence 344688999999999999999999999999999999976543 23446889999999999999999 79999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
+.||+++|++++.+++|...|.+++.. ..+-.++.+++.||++++||++..+.+.++.. ..
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-ky----------------- 175 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KY----------------- 175 (338)
T ss_pred EEEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ce-----------------
Confidence 999999999999999999999998832 23335778889999999999998776655432 22
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
++.++.|..++..+++|+-|+.|++||++.+.....+.+|.. .|+.+..+++|.++.+-+.|.++++||++.-.
T Consensus 176 ----qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 176 ----QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ----eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccC
Confidence 344455555556899999999999999999999999987754 89999999999999999999999999975320
Q ss_pred hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224 658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 737 (1120)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 737 (1120)
... ..+.++
T Consensus 250 p~~---------------------------------------------------------------------R~v~if-- 258 (338)
T KOG0265|consen 250 PSQ---------------------------------------------------------------------RCVKIF-- 258 (338)
T ss_pred CCC---------------------------------------------------------------------ceEEEe--
Confidence 000 000000
Q ss_pred ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224 738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 817 (1120)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 817 (1120)
.+..
T Consensus 259 -------------------------------------~g~~--------------------------------------- 262 (338)
T KOG0265|consen 259 -------------------------------------QGHI--------------------------------------- 262 (338)
T ss_pred -------------------------------------ecch---------------------------------------
Confidence 0000
Q ss_pred CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
.........++|+|+++.+..|+ |..+++||..+...+..+++|.+.|++++|+| ...+|.+++.|.+|++=.
T Consensus 263 ---hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 ---HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ---hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 00122334578999999999998 99999999999899999999999999999999 889999999999998743
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-33 Score=285.49 Aligned_cols=279 Identities=15% Similarity=0.267 Sum_probs=242.8
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....|++++|+.+|..|+++..+|.+++|+.. |.++.. + ..|.++|.++.|+.+
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-----------------------G~l~~t-l--~~HkgPI~slKWnk~ 287 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-----------------------GNLIST-L--GQHKGPIFSLKWNKK 287 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecC-----------------------chhhhh-h--hccCCceEEEEEcCC
Confidence 45789999999999999999999999999862 222111 2 239999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 914 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 914 (1120)
|.||++++ |+++.+||..+++..+.+.-|..+-..|.|-. ..-+|+.+.||.|+|+.+....++.++.+|.++|.+|
T Consensus 288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 99999999 99999999999999999988888877888874 5678899999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC---------cEEEE-EeCCeEEEE
Q 001224 915 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---------IHFLV-VHETQLAIF 984 (1120)
Q Consensus 915 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg---------~~la~-~~d~~v~i~ 984 (1120)
.|.|.|.+|+|++.|++++||+.... .+...+.+|.. .|..+.|+|+| ..+++ +.|+.|++|
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~Hsk---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAHSK---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhhcc---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 99999999999999999999998763 34555566654 78899999864 45555 699999999
Q ss_pred EcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224 985 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus 985 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
|+..+.++..+. .|..+|++++|||+|+|||+|+.||.|.||+..++++.+... + +..|+ .++|+.
T Consensus 438 dv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~- 503 (524)
T KOG0273|consen 438 DVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA- 503 (524)
T ss_pred EccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-
Confidence 999999999987 899999999999999999999999999999999999998877 2 23366 899998
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001224 1065 EPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1065 d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
+|++|...-.||.+.+-|+.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 57999999999999998874
No 39
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-30 Score=277.28 Aligned_cols=510 Identities=13% Similarity=0.168 Sum_probs=352.6
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
..+|.++|||.+.+.||.+-.||.|.||++..+=... ..+.|+ ...|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 4589999999999999999999999999999864333 245555 45899999997766 89999999999999999
Q ss_pred CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
++.+..+....+.|++++.++.. ..++.|+.||.+..++............ .-..+.+-
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l-------------------~rq~sRvL 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSL-------------------MRQKSRVL 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeec-------------------ccccceEE
Confidence 99999999999999999987765 5899999999776666654332221111 01123455
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-----CC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-----DG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
+++|+|++..+++|+.||.|++||..++..+..... .. ...-|.++.|-.+ ..+++|...|+|.+||...+ .
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-c
Confidence 666666667899999999999999999987773221 11 2223455666544 46788888888888887766 3
Q ss_pred hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224 659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 738 (1120)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 738 (1120)
+.+.+.
T Consensus 237 LiqS~~-------------------------------------------------------------------------- 242 (691)
T KOG2048|consen 237 LIQSHS-------------------------------------------------------------------------- 242 (691)
T ss_pred hhhhhh--------------------------------------------------------------------------
Confidence 333221
Q ss_pred cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224 739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 818 (1120)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 818 (1120)
.|...|.+++.++++.++++++.|+.+..|...+... -|-....
T Consensus 243 ----------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~~------- 286 (691)
T KOG2048|consen 243 ----------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINSR------- 286 (691)
T ss_pred ----------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeecc-------
Confidence 2678899999999999999999999988887643211 0211111
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCe-EEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA-TFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
...|...+.+++..++ .+++|+ |.++.+-.....+..........+- .-+...| .++|..--.+..+.+|.+.
T Consensus 287 -r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 287 -RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred -ccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceecc
Confidence 1238889999999887 777777 8887776655422211111000001 1122333 3344444456678888776
Q ss_pred cce---------eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEc
Q 001224 897 VDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 967 (1120)
Q Consensus 897 ~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs 967 (1120)
+.- +++-...-...|.+.+.||||++++.+.- ..++||.+..........+..... .......+.|+
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~---~~~~a~~i~ft 437 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPL---ALLDASAISFT 437 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchh---hhccceeeEEE
Confidence 541 12222223456999999999999997764 348888887644322222221111 11356788999
Q ss_pred cCCcEEEE-E-eCCeEEEEEcCCce--eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc
Q 001224 968 QDQIHFLV-V-HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1043 (1120)
Q Consensus 968 pdg~~la~-~-~d~~v~i~d~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~ 1043 (1120)
-|+..++. + ....+.++++.+.. .+..+...+-...|+.+..|+||+|||+.+.+|.|.+|++.+++......
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--- 514 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--- 514 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---
Confidence 88877766 4 66788888876653 33333333446789999999999999999999999999999988775442
Q ss_pred ccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC-CCCCC
Q 001224 1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGV 1092 (1120)
Q Consensus 1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~ 1092 (1120)
.-+....+++|+|.+-+.|+.+..|+.++-+|++... ..|..
T Consensus 515 -------rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~ 557 (691)
T KOG2048|consen 515 -------RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSK 557 (691)
T ss_pred -------ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhh
Confidence 0113344889998778889999999999999995544 44443
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=276.04 Aligned_cols=251 Identities=19% Similarity=0.307 Sum_probs=219.7
Q ss_pred Ccceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 354 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 354 ~~~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
|-++.+.+ +|.+.|.|+++.|-.++ +++|+.|++|.|||+.+|+... .+.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEE-------------------eecchhheeeee
Confidence 44444444 49999999999999885 9999999999999999999887 489999999999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
++|+-..||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.++||||+++...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999998777 6889999999999999988 79999999999999999999999999
Q ss_pred ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
||..+|.++.+.+.. ..+++|+.|++|++||+..++...++..|...+.+++..|. .
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~---------------------e 331 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK---------------------E 331 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc---------------------h
Confidence 999999999875543 57999999999999999998888877777766665555554 4
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..+++++.| .|+-|++..|..+..+.++.. .+++++...|| ++++|+++|.+.+||.+++
T Consensus 332 ~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 332 NLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred hhhhccCCc-cceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 567777766 699999999999988776644 68889988776 6788999999999999988
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-31 Score=288.73 Aligned_cols=449 Identities=15% Similarity=0.255 Sum_probs=313.7
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
+..-+.+|..++|+|...+++++-..|.|++||++-+.++. .+.+|.++|..++|.|++. ++++||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44456789999999999999999999999999999888776 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 581 (1120)
..+.+|+.++.||.+.|..+.||+.. .+|+++|.|.+|++|++.+.+++..+.+|.+.|.+..|.|..
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE---------- 147 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE---------- 147 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc----------
Confidence 99999999999999999999998765 699999999999999999999999999999988877776644
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------eeEEEecCCCCCCcCeEEEcC
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---------------------------LLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
..++++|-|.+||+||+..-+ .+...-.++|...|+.++|+|
T Consensus 148 -----------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 148 -----------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred -----------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 479999999999999985321 111122234455677788888
Q ss_pred CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224 635 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 714 (1120)
Q Consensus 635 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1120)
.-.++++|++|..|++|.++..
T Consensus 217 TlpliVSG~DDRqVKlWrmnet---------------------------------------------------------- 238 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET---------------------------------------------------------- 238 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence 7778888888888888865322
Q ss_pred cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224 715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 794 (1120)
Q Consensus 715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 794 (1120)
+.|.+++. .+|.+.|.++.|+|....+++.++|+.|+|||+...
T Consensus 239 ------------------KaWEvDtc-------------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR----- 282 (1202)
T KOG0292|consen 239 ------------------KAWEVDTC-------------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR----- 282 (1202)
T ss_pred ------------------cceeehhh-------------hcccCCcceEEecCccceeEecCCCccEEEEecccc-----
Confidence 23433321 469999999999999999999999999999998432
Q ss_pred CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEe
Q 001224 795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874 (1120)
Q Consensus 795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 874 (1120)
++ +.. +.. ..+..+.++.+|..++++.|.|+.+.||-++.-. ++.+ .+
T Consensus 283 ---------------t~--v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~~--v~ 330 (1202)
T KOG0292|consen 283 ---------------TS--VQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAYA--VN 330 (1202)
T ss_pred ---------------cc--eee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceEE--Ec
Confidence 11 111 111 4567889999999999999999888888876322 2222 22
Q ss_pred cCCCcEEEEEeCCCcEEEEEeeccee--eEeeccc---ccceEEEEEccCCCEE-EEEeCC-CCEEEEECCCccccccee
Q 001224 875 PQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRF 947 (1120)
Q Consensus 875 p~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-g~v~iWd~~~~~~~~~~~ 947 (1120)
++.++.+ .|..|+-+|+.+.+- +..++.. -.++.++.++|....+ ++...| |.--++.+..........
T Consensus 331 --~n~LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GNGLFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CCEEEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 3334443 389999999988543 3344433 3678899999875544 443333 333444443311100000
Q ss_pred eeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224 948 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus 948 ~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
.....+ .. ....|-..+++.+.. ++..+.+-++.+... +.+.. ...+..|-+.-+|.+|+.. ...|.
T Consensus 407 ~~~~k~-----tG-~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~ 474 (1202)
T KOG0292|consen 407 KDVKKG-----TG-EGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVT 474 (1202)
T ss_pred hhhhcC-----CC-CceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEE
Confidence 000000 01 112222222222222 344444444433221 11111 1234455555566666633 56799
Q ss_pred EEEcCCcceeeeeC
Q 001224 1027 VFSAANLKLRCRIN 1040 (1120)
Q Consensus 1027 iwd~~~~~~~~~~~ 1040 (1120)
+||+...+.+..++
T Consensus 475 lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEeecceEEEEEe
Confidence 99999998888776
No 42
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-29 Score=270.29 Aligned_cols=547 Identities=14% Similarity=0.137 Sum_probs=378.0
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC-CCCceEEEEEcCCCCeEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~la 442 (1120)
..+|+|+|||.+.+. ||.|-.||.|.||++..+=... .++.+ ....|.+++|+ +|..|.
T Consensus 25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeEE
Confidence 478999999999995 9999999999999998743222 12444 45689999999 666788
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE--EeeccccCeEE
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS 520 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~h~~~v~~ 520 (1120)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++...++... .+....+.|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 89999999999999987555 6777788999999999998 69999999988888888777654 34456689999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeee-------C-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------A-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
+.|++ ++..+++|+.||.|++||...+....... . ...-|+++.+-.++
T Consensus 160 lsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------------------- 216 (691)
T KOG2048|consen 160 LSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------------------- 216 (691)
T ss_pred EEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---------------------
Confidence 99864 45679999999999999998876554111 1 11234444444444
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 672 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 672 (1120)
.+++|..-|+|.+||...+.+++.+..+.. .|.+++..+++.++++++-|+.|.-+...++...
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------- 280 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------- 280 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------
Confidence 499999999999999999999999887654 6999999999999999999999988876554210
Q ss_pred cCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccC
Q 001224 673 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 752 (1120)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 752 (1120)
|-.. ..
T Consensus 281 --------------------------------------------------------------wv~~------------~~ 286 (691)
T KOG2048|consen 281 --------------------------------------------------------------WVIN------------SR 286 (691)
T ss_pred --------------------------------------------------------------eeee------------cc
Confidence 1000 00
Q ss_pred CccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc-EEE
Q 001224 753 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFA 831 (1120)
Q Consensus 753 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-~l~ 831 (1120)
...|...+++++..++ .+++++.|..+.+-....... .+. ... ...+-. -+.
T Consensus 287 r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~h---~~~--------~~~p~~~~v~ 339 (691)
T KOG2048|consen 287 RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MDH---RQK--------NLFPASDRVS 339 (691)
T ss_pred ccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hhh---hcc--------ccccccceee
Confidence 1237788888888877 689999998887754321100 000 000 001111 133
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCCce---------eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-
Q 001224 832 LSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK- 901 (1120)
Q Consensus 832 ~s~d~~~l~~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~- 901 (1120)
..+..+.++.-.+..+.+|.+.+... .+........|.|.+.|| +|++||.+.- ..++||.+.....+
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk 417 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVK 417 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCccee
Confidence 44555555555578888998875421 122223455799999999 9999998763 46888887752222
Q ss_pred ----EeecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-
Q 001224 902 ----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 975 (1120)
Q Consensus 902 ----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~- 975 (1120)
.......-.+..+.|+-|+..++.++ .+..+.+.++++........++.. .....|..++.||+|+|+|+
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEE
Confidence 12222334577889999998888777 677888888887543322222111 12358999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC-CCcEEEEEEcCCcEEEEEcCCcceeeeeCC-CcccCCCCCCCC
Q 001224 976 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINP-SAYLPAGVSSSN 1053 (1120)
Q Consensus 976 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~-~~~~~~g~~~~~ 1053 (1120)
+..+.|.+|++++++...... .-...|+.++|+| +-..|+.+..|+.|+=||++..++..-... ...+|.....-.
T Consensus 494 ~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~ 571 (691)
T KOG2048|consen 494 STRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLI 571 (691)
T ss_pred eccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcC
Confidence 689999999999987655442 2257899999995 556788899999999999954432211110 011221111111
Q ss_pred ccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
-....+.|+|.+... +..-+.+.+.+.|..
T Consensus 572 ~~~~gisfd~~n~s~-~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 572 PGIPGISFDPKNSSR-FIVYDAHWSCLIDFS 601 (691)
T ss_pred CCCceEEeCCCCccE-EEEEcCcEEEEEecC
Confidence 112378888754433 334445666666643
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.1e-33 Score=267.04 Aligned_cols=253 Identities=18% Similarity=0.227 Sum_probs=215.8
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
...+.+|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. .++++|.++|..+.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMR 100 (338)
T ss_pred hhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeecc
Confidence 345667999999999999999 59999999999999976433211 14789999999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 516 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 516 (1120)
|++.|++++.|.+|+.||+++|++++ .+++|.+.|+++.-+.-|.. ++.+++.|+++++||+++..+++++. ...
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cce
Confidence 99999999999999999999999777 68899999999996666776 78999999999999999999998886 456
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.+++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|. +++
T Consensus 176 qltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs---------------------~ll 232 (338)
T KOG0265|consen 176 QLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS---------------------FLL 232 (338)
T ss_pred eEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------ccc
Confidence 788888854 446899999999999999999888888888888888888777775 789
Q ss_pred EEeCCCeEEEEECCC----CceeEEEecCCCCC--CcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 597 AAGDDFSIKFWDMDS----VQLLTSIDADGGLP--ASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+-+.|.++++||++. .+++..+.++.+.- ....++|+|++..+.+|+.|..+++||....
T Consensus 233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 999999999999874 34577777665532 3457899999999999999999999997543
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-33 Score=309.18 Aligned_cols=274 Identities=15% Similarity=0.215 Sum_probs=234.4
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....+.|..|++|+++++.+..|..|++|.+...+.. . ++ +.. +
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~----------------------~--lk---~~~---------~ 420 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK----------------------K--LK---DAS---------D 420 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhc----------------------c--cc---chh---------h
Confidence 4567899999999999999999999999987421100 0 00 000 1
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 914 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 914 (1120)
...+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 11111222 33366667677777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeee
Q 001224 915 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 993 (1120)
Q Consensus 915 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~ 993 (1120)
.|+|-|-++||+|.|++-++|..+. ..++..+.||.. .|.|+.|+|+..|+++| .|.+|++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999887 456778888875 89999999999999995 89999999999999999
Q ss_pred ccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224 994 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
.|. ||.++|++++|||+|++|++|+.||.|.|||+.+++++..+. +| ...+. ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999998887 65 34477 899999 799999999
Q ss_pred CCCcEEEEecCCCC
Q 001224 1074 SDGGVHVFEPLESE 1087 (1120)
Q Consensus 1074 ~Dg~v~vW~~~~~~ 1087 (1120)
.|++|++||+....
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999987655
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.1e-32 Score=257.08 Aligned_cols=247 Identities=19% Similarity=0.338 Sum_probs=198.8
Q ss_pred eeeccCCCCceEEEEecC-CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 358 TRTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spd-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
..+-+|++.|+.++|+|- |. +||+++.|+.|+||+...+..... ...+-.+|+..|..++|+|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred EeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecC
Confidence 345569999999999999 77 799999999999999985332221 1113468999999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC---ceeEEeec
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEG 513 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~ 513 (1120)
.|++||+||.|.++.||.-..++ +....+|.||...|.|++|+++|. +||+|+.|++|-||.+..+ +++..++.
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999999999887655 556778999999999999999999 8999999999999998754 56788999
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC---CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~ 590 (1120)
|...|..+.|||+. .+|++++.|.+|++|+-... .+..++.+|...|.++ +|++
T Consensus 149 HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~---------------------~F~~ 205 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL---------------------AFDN 205 (312)
T ss_pred ccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE---------------------EecC
Confidence 99999999999987 49999999999999976631 2344555555545444 4555
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
.|..|++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|+++...
T Consensus 206 ~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 206 IGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CCceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 5557999999999999986532 11 1223467788888 5689999999999999654
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=283.39 Aligned_cols=284 Identities=20% Similarity=0.313 Sum_probs=244.1
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
-+..|..|.|.|+|+. |++|+..|.+.+|+..+ ++| ..++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnF-------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNF-------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCce------eeH-------------HHHhhhhcccceeEEEccCCCEEE
Confidence 4578999999999997 99999999999999733 122 126889999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 521 (1120)
+|+.+|.|++|+..-.... .+.+| ...|++++|+|++. .++++++||+|+|||....+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999988754322 34454 48999999999888 69999999999999999999999999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 601 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 601 (1120)
.|||.. ..|++|+.|..|++||.+++.++.++..|...|..+.|++++ ++|+++|.|
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---------------------N~Llt~skD 285 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---------------------NWLLTGSKD 285 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---------------------CeeEEccCC
Confidence 999876 589999999999999999999999999998888887777766 489999999
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224 602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680 (1120)
Q Consensus 602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1120)
..++++|+++.+.+.++.+|.. .++++.|+| ...+|.+|+.||.|..|.+... +.+.
T Consensus 286 ~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~------------------- 343 (464)
T KOG0284|consen 286 QSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLG------------------- 343 (464)
T ss_pred ceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccc-cccc-------------------
Confidence 9999999998888888887754 799999999 7788999999999999987522 1100
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224 681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 760 (1120)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i 760 (1120)
....+|...|
T Consensus 344 ----------------------------------------------------------------------~i~~AHd~~i 353 (464)
T KOG0284|consen 344 ----------------------------------------------------------------------EIPPAHDGEI 353 (464)
T ss_pred ----------------------------------------------------------------------CCCcccccce
Confidence 0113488999
Q ss_pred EEEEEcCCCceEEEeccCceEEEeeec
Q 001224 761 SRLIFTNSGNAILALASNAIHLLWKWQ 787 (1120)
Q Consensus 761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~ 787 (1120)
.+++++|-|..|++++.|.++++|.-.
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999999999999999753
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=268.85 Aligned_cols=294 Identities=16% Similarity=0.317 Sum_probs=246.3
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
++.+|.+.|.|+++.|-..++++|+.|++++|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 689999999999999999999999999999999999998554 7999999999999999988 89999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
|++..+.++.+.||-..|.++..+|.- +.|++|+.|.++++||+++...+..+.+|...|.++.+.|-..
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------- 290 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------- 290 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence 999999999999999999999998776 5899999999999999999999999999998888877765443
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
.+++|+.|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred -------------ceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 599999999999999999999999886654 79999999999999998876 6788887766 222
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
..+
T Consensus 354 ~nl----------------------------------------------------------------------------- 356 (460)
T KOG0285|consen 354 QNL----------------------------------------------------------------------------- 356 (460)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 212
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
.+|...|.+++.+.||- +++++.+|.+.+||+..+..-..++... .-|.
T Consensus 357 -------------sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS-------- 405 (460)
T KOG0285|consen 357 -------------SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS-------- 405 (460)
T ss_pred -------------ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence 23667788888888875 7888889999999986542211111000 0011
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 854 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~ 854 (1120)
...+..|.+.+|...|..|++|. |.+|++|.-..
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 12467799999999999999998 99999998653
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.3e-31 Score=251.14 Aligned_cols=293 Identities=15% Similarity=0.206 Sum_probs=236.9
Q ss_pred ccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224 754 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 832 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~ 832 (1120)
.+|.+++..++|+|- |..|++++.|..|++|+.... ...........+|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~---------------------~s~~ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG---------------------DSWTCKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC---------------------CcEEEEEeccccchheeeeeee
Confidence 458889999999999 899999999999999987320 0011111122359999999999
Q ss_pred ccCCCEEEEEe-CCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeEeecc
Q 001224 833 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG 906 (1120)
Q Consensus 833 s~d~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~ 906 (1120)
+|.|++|++++ |.++.||.-. .++++.++.+|..+|.|++|++ +|++||+++.|++|-||.+.. .++...|++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999865 4678999999999999999999 999999999999999999985 367889999
Q ss_pred cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEE
Q 001224 907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFE 985 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d 985 (1120)
|...|..+.|+|...+|+|++.|.+|++|+-.. .....+.+.+.+|.. .|.+++|++.|..|+++ .|+.++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 223667888888875 89999999999988885 889999998
Q ss_pred cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
..+. + ...|+.+++.+.|. ...|++++.|+.|++|.-...-.-..+........-| ...|+ +++|.|..
T Consensus 224 ~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVN--SVQWNPKV 292 (312)
T ss_pred eccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccc--eEEEcCCC
Confidence 6522 2 23678999999997 5679999999999999876431111111111111222 23477 99999965
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001224 1066 PNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1066 ~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
+++|++|+.||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
No 49
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=8.7e-30 Score=262.42 Aligned_cols=433 Identities=18% Similarity=0.251 Sum_probs=318.0
Q ss_pred ceeeecc-CCCCceEEEEecC--CCeEEEEE-eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224 356 TVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 431 (1120)
Q Consensus 356 ~~~~~~~-h~~~v~~v~~spd--g~~lla~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 431 (1120)
...+.++ -...|+|++||+- |.+|++.- +.+..+.|||++.+..... ....+..|..
T Consensus 145 ~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~ 205 (626)
T KOG2106|consen 145 STLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFL 205 (626)
T ss_pred eeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEE
Confidence 3445555 5678999999983 44433332 3355688999988766542 3335568999
Q ss_pred EEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccc-cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224 432 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510 (1120)
Q Consensus 432 l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 510 (1120)
..|.|.+.-|......+.+..|+.+++...+....+.++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+.
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeE
Confidence 9999966666655567889999999998877666666554 5799999999999 89999999999999888777777
Q ss_pred eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee--eeCCCCceeEEEEc-------------------C
Q 001224 511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYS-------------------A 569 (1120)
Q Consensus 511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s-------------------~ 569 (1120)
...|.+.|.++|... +| .|++|+.|+.|..|| ..-+.+.. ++...+.+..++-. .
T Consensus 283 ~~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred eeecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 779999999999754 43 577799999999998 33222222 22222233332211 1
Q ss_pred CCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001224 570 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 649 (1120)
Q Consensus 570 ~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 649 (1120)
.-.....||.+ ..+.++.+|+.+++++++.|+.+++|+ ..+++.+.... .++.|+.|+|.| .+++|+..|...
T Consensus 359 ~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 359 GFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred CceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEE
Confidence 11133444544 788899999999999999999999999 45555554433 257899999999 999999999999
Q ss_pred EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224 650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 729 (1120)
Q Consensus 650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 729 (1120)
+.|.++. ..+..
T Consensus 432 V~d~e~~-~lv~~------------------------------------------------------------------- 443 (626)
T KOG2106|consen 432 VLDTETQ-DLVTI------------------------------------------------------------------- 443 (626)
T ss_pred EEecccc-eeEEE-------------------------------------------------------------------
Confidence 9987663 11110
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 809 (1120)
.....++..+.|+|+|.+++.++.|+.|++|.+...
T Consensus 444 ------------------------~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-------------------- 479 (626)
T KOG2106|consen 444 ------------------------HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-------------------- 479 (626)
T ss_pred ------------------------EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC--------------------
Confidence 002467899999999999999999999999987432
Q ss_pred CCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee--------------e----cCCCCCeEE
Q 001224 810 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--------------F----MPPPPAATF 870 (1120)
Q Consensus 810 ~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~ 870 (1120)
|+.....-.. +..+|+.+.||+|++++.+-+ |-.|-.|.....+.... | ..+...|..
T Consensus 480 -g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a 556 (626)
T KOG2106|consen 480 -GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINA 556 (626)
T ss_pred -CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHH
Confidence 2221111111 448899999999999999998 88899995432221111 1 124455777
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEeecc---eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 871 LAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 871 l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
++-+. +.+++|+|.+.|.|++|...-- .......+|++.|++++|.-+...|++.+.|..|..|++
T Consensus 557 ~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 557 VARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 77777 8899999999999999987643 334667899999999999988888888889999999986
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=280.92 Aligned_cols=291 Identities=19% Similarity=0.304 Sum_probs=248.4
Q ss_pred ccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccC-CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 420 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 420 ~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
+.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.||..+|.+++|+++|. -++|+|.|+.|
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 36889999999999999 999999999999999999987 66665 7999999999999999999 59999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
++||+++|+++..+. ....+.++.|++++ .+.+++|+.|+.|+.||+++++.+..+..|-+.+..+.|-++|+
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~----- 355 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR----- 355 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-----
Confidence 999999999999986 45667889998876 37899999999999999999998888888888888888888776
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
++++.++|++++||+.+.+..+..... .......++..+|+++++++-+.|+.|.++.+....
T Consensus 356 ----------------rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 356 ----------------RFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred ----------------eEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 799999999999999998876654432 223357889999999999999999999999864431
Q ss_pred hh--hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 658 RL--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 658 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
+. .+.+++|.
T Consensus 419 r~nkkK~feGh~-------------------------------------------------------------------- 430 (503)
T KOG0282|consen 419 RLNKKKRFEGHS-------------------------------------------------------------------- 430 (503)
T ss_pred ccCHhhhhccee--------------------------------------------------------------------
Confidence 11 11111100
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 815 (1120)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
-.+....+.|||||++|++|+ ||.+.+||.++-+.+..+++|.+.+..+.|+|.....+|+++.||.|++|+
T Consensus 431 -------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 -------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 122334688999999999998 999999999999999999999999999999998888999999999999996
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=272.96 Aligned_cols=285 Identities=16% Similarity=0.256 Sum_probs=240.8
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....|..+.|.|+|+.|++++..|...+|+.....+ ...+ ..|+..|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------------Etil--QaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------------ETIL--QAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------HHHh--hhhcccceeEEEccC
Confidence 346788999999999999999999999997522111 1112 239999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
|.++++|+ +|.|++|+..-. .+..+.+| ...|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 899999998653 44455555 48899999999 6778889999999999999988888889999999999
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceee
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 992 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~ 992 (1120)
++|+|...+||++|.|..|++||.+++. ++....+|.. .|..+.|+|++.+|++ +.|..+++||+++.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999965 5677777775 8999999999999999 69999999999988777
Q ss_pred eccccCCCCCCeeEEEECCC-CcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224 993 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 993 ~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
..+. +|...|++++|+|- ..+|.+|+.||.|..|.+...+.+.. ++..|... |+ +++|+|- |.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~------i~~AHd~~-iw--sl~~hPl-Ghil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE------IPPAHDGE-IW--SLAYHPL-GHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccC------CCcccccc-ee--eeecccc-ceeEee
Confidence 7665 89999999999994 56788999999999999986665544 33444344 77 9999995 899999
Q ss_pred EeCCCcEEEEecCCCC
Q 001224 1072 GLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1072 ~~~Dg~v~vW~~~~~~ 1087 (1120)
|+.|.++++|.-....
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999865433
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.3e-31 Score=300.63 Aligned_cols=289 Identities=27% Similarity=0.423 Sum_probs=246.8
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+ .+|...|..++|+|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLREL--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccc--cccccceeeeEECCC
Confidence 46788999999999999999999999999862211 0 011112 249999999999999
Q ss_pred CCEEEEEe-CCcEEEEEc-CCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 836 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
++++++++ |++|++||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceee
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 992 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~ 992 (1120)
++|++|+.+|++++.|+.|+|||+.++... +.....++.... .++.++|+|++++++++ .|+.+++||+..+.+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997653 455666665533 68999999999999995 7779999999999999
Q ss_pred eccccCCCCC---CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224 993 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus 993 ~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
..+. +|.. .+.+..++++++++++|+.|+.|++||+.++..++.+. +|....+. .+.++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 8887 4544 45566778899999999999999999999999998887 43222234 788999 47899
Q ss_pred EEEe--CCCcEEEEecC
Q 001224 1070 ALGL--SDGGVHVFEPL 1084 (1120)
Q Consensus 1070 ~s~~--~Dg~v~vW~~~ 1084 (1120)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9988 79999999864
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=246.72 Aligned_cols=251 Identities=18% Similarity=0.229 Sum_probs=218.7
Q ss_pred Ccceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 354 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 354 ~~~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
|.+-.+++ .|+++|.++.|+-||+| .++++.|.+|++|++..|..+++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 33333444 49999999999999997 78888899999999999998874 88999999999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC--CceeEE
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYI 510 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~--~~~~~~ 510 (1120)
+.+.|...+++|+.|..|.+||+++|+.++ .+++|.+.|+.++|+.+.. ++++|+.|.++++||.++ .++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999887 7999999999999999998 899999999999999985 577888
Q ss_pred eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224 511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590 (1120)
Q Consensus 511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~ 590 (1120)
+......|.++.... ..|++|+.||++|.||++.+.....+- ..+++++++++
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy~-----------------------g~pit~vs~s~ 193 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDYF-----------------------GHPITSVSFSK 193 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhhc-----------------------CCcceeEEecC
Confidence 888888999987632 579999999999999998765433222 23666666777
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++..++++.|+++++.|-.+|+.+..+++|.....=..++++.....+++|++||.|.+||+.++
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 777999999999999999999999999999887766677888888999999999999999999776
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=297.72 Aligned_cols=257 Identities=21% Similarity=0.371 Sum_probs=214.5
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc--eeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
+...|+|+.|||+|++ +++++.|+.+++|+..+++ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4799999999999996 9999999999999997766 222 35789999999999999999
Q ss_pred EEEEECCCeEEEEEc-cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224 441 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 441 las~~~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445454 7889999999999999996 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 99984 5668999999999999999998763 2333322221 0 3455555666669999
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccc
Q 001224 598 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 666 (1120)
Q Consensus 598 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 666 (1120)
++.|+.+++||+..+.....+..+... ..+.+..+++.+.++++|+.|+.|.+|+..++ ..+..+.+|
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h 420 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH 420 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence 999999999999999999998877653 23445556789999999999999999999886 455544443
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5e-31 Score=264.85 Aligned_cols=288 Identities=20% Similarity=0.358 Sum_probs=233.2
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc---eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 542 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 542 (1120)
.+..|.+.|+.+.||++|+ |||+++.|.+..+|++.... ..+++.+|..+|..+.|+|+. ++|++++.|..+.
T Consensus 219 il~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd--ryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD--RYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC--CeEEecCchHhee
Confidence 5778999999999999999 89999999999999987543 468899999999999996654 7999999999999
Q ss_pred EEecCCCCCceeeeCC-CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 001224 543 AWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 621 (1120)
Q Consensus 543 iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 621 (1120)
+||+.++.....+... +..+.+.+|.|| |..+++|+.|+.+..||++ |.....+++.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pD---------------------g~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv 352 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPD---------------------GFRFVTGSPDRTIIMWDLD-GNILGNWEGV 352 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccC---------------------CceeEecCCCCcEEEecCC-cchhhccccc
Confidence 9999998877655433 344445555554 4579999999999999985 4445555543
Q ss_pred CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224 622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 701 (1120)
Q Consensus 622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1120)
. ...|.+++.++||+++++.+.|..|++++..+.... .
T Consensus 353 r-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-~---------------------------------------- 390 (519)
T KOG0293|consen 353 R-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-G---------------------------------------- 390 (519)
T ss_pred c-cceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-c----------------------------------------
Confidence 3 245889999999999999999999998876432000 0
Q ss_pred ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224 702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 781 (1120)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 781 (1120)
+
T Consensus 391 ----------------------------------------------------------------------l--------- 391 (519)
T KOG0293|consen 391 ----------------------------------------------------------------------L--------- 391 (519)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee
Q 001224 782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 860 (1120)
Q Consensus 782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~ 860 (1120)
.....+|+++++|.|++++++.- +..+++||++....++.
T Consensus 392 ---------------------------------------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 392 ---------------------------------------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ---------------------------------------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 00345677888888888877766 78899999999899999
Q ss_pred ecCCCCC--eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEEC
Q 001224 861 FMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 861 ~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~ 937 (1120)
+.+|... |..-+|-..+..++|+|++|+.|+||+..+|+++.++.||...|++|+|+|.. ..+||||.||+||||..
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9998764 55556765466899999999999999999999999999999999999999865 67899999999999987
Q ss_pred CC
Q 001224 938 DG 939 (1120)
Q Consensus 938 ~~ 939 (1120)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 65
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.5e-30 Score=237.03 Aligned_cols=288 Identities=17% Similarity=0.267 Sum_probs=233.0
Q ss_pred ccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 418 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 418 ~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
...++.+|.++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. -+++|+.|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence 344688999999999999999999999999999999999998777 7899999999999999998 49999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC--CCceeeeCCCCceeEEEEcCCCCeEE
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
.+||+.+|+.++.+.+|.+.|+.+.|+. +...+++|+.|.++++||.++. ++++.+......|.++.++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~------- 154 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA------- 154 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-------
Confidence 9999999999999999999999999854 4479999999999999999864 3445555444555554443
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
+..+++|+.||+++.||++.|+....+-++ +|+|++|++|++..++++.|+++++.|-.+
T Consensus 155 ----------------~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 155 ----------------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred ----------------ccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccch
Confidence 246999999999999999999877666533 799999999999999999999999999999
Q ss_pred cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
| ++++...+|...-.
T Consensus 215 G-klL~sYkGhkn~ey---------------------------------------------------------------- 229 (307)
T KOG0316|consen 215 G-KLLKSYKGHKNMEY---------------------------------------------------------------- 229 (307)
T ss_pred h-HHHHHhccccccee----------------------------------------------------------------
Confidence 9 78888877654311
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 815 (1120)
-...+++.....++++++||.+++||+.... .+.
T Consensus 230 ------------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~----------------------~~s 263 (307)
T KOG0316|consen 230 ------------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDET----------------------QIS 263 (307)
T ss_pred ------------------------eeeeeecccceeEEeccCCceEEEEEeccce----------------------eee
Confidence 1234556666678888888998888873321 111
Q ss_pred ccCCCCCCCCC-ccEEEEccCCCEEEEEeCCcEEEEEcC
Q 001224 816 NDVTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNMM 853 (1120)
Q Consensus 816 ~~~~~~~~~~~-v~~l~~s~d~~~l~~~sdg~i~vwd~~ 853 (1120)
. +.. +... +.++.+.|.-..++++.++.+..|--.
T Consensus 264 k-~~~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 264 K-LSV--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQE 299 (307)
T ss_pred e-ecc--CCceeEEeeecccCccceeEecCCceeceeeh
Confidence 1 111 3333 788999999888888888888887643
No 57
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=6.5e-29 Score=261.75 Aligned_cols=248 Identities=18% Similarity=0.246 Sum_probs=176.9
Q ss_pred EeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEE
Q 001224 774 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFN 851 (1120)
Q Consensus 774 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd 851 (1120)
..+..|.|-||+++....-+++. +.+......|+.+.|.| |...||+++ ||.|++|.
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 35567899999986443333322 22233667789999998 667888888 89999999
Q ss_pred cCCCc-------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224 852 MMTFK-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 924 (1120)
Q Consensus 852 ~~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 924 (1120)
+..+. .-..+..|...|+++.|+|--...||+++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+|
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence 87542 33557789999999999997788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeC----CeEEEEEcCCcee--eecccc
Q 001224 925 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLEC--VKQWVP 997 (1120)
Q Consensus 925 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d----~~v~i~d~~~~~~--~~~~~~ 997 (1120)
+.+.||+|+||+-..++. .+.. +..+....-..+.|.-||+++++ |.| .+|.+||..+... +.+...
T Consensus 737 tVcKDg~~rVy~Prs~e~----pv~E--g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQ----PVYE--GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeecCceEEEeCCCCCCC----cccc--CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999887553 2222 22222234467899999999888 544 5788999876542 111111
Q ss_pred CCCCCCeeEEEECCCCc-EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224 998 RESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus 998 ~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
+. ...+.--.+.+|.. ++++|-.|..|.+|.+......-.-..+...+.+|
T Consensus 811 Dv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~h 862 (1012)
T KOG1445|consen 811 DV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGH 862 (1012)
T ss_pred cc-cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcc
Confidence 10 11111112344544 57788889999999986655433222234445554
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.3e-31 Score=262.81 Aligned_cols=232 Identities=20% Similarity=0.353 Sum_probs=203.1
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
..+.|.|+.+..+ .+++|..|++|.|||..+-+.+. ++.||++.|.|+.|. .+.++
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 4578999998654 49999999999999998877665 589999999999995 56999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce---eEEeeccccCeE
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 519 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~ 519 (1120)
+|+.|.+|+|||+++|+.+. ++-+|...|..+.|+.. ++++++.|.+|.|||+..... .+.+.||...|.
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999776 78899999999999853 799999999999999987653 356789999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
.+.|.. +++++++.|.+|++|++.+.+.+.++.+|...|.++.+. ++++++|+
T Consensus 325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS 377 (499)
T ss_pred eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence 998732 599999999999999999999999999988877766542 35789999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.|.+|++||+..|.++..+++|.. -|.|+.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999987765 6899999 5678999999999999999876
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=268.64 Aligned_cols=291 Identities=19% Similarity=0.366 Sum_probs=244.9
Q ss_pred CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
.+.+.++.||+..|+++.|.+. .+.+|++++.|+.|++|++.. ++++.++.+|..+|..++|+.+|.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~----------- 271 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT----------- 271 (503)
T ss_pred HhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----------
Confidence 3556788999999999998763 458999999999999999987 677888899988888888888876
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhh
Q 001224 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRT 662 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 662 (1120)
.+++++-|+.|++||.++|+++..+.... .+.|+.|.||+ +.+++|+.|+.|+.||++++ +.++.
T Consensus 272 ----------~fLS~sfD~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqe 337 (503)
T KOG0282|consen 272 ----------SFLSASFDRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQE 337 (503)
T ss_pred ----------eeeeeecceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHH
Confidence 69999999999999999999999997543 47899999988 89999999999999999998 55554
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCC
Q 001224 663 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 742 (1120)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 742 (1120)
...
T Consensus 338 Yd~----------------------------------------------------------------------------- 340 (503)
T KOG0282|consen 338 YDR----------------------------------------------------------------------------- 340 (503)
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 422
Q ss_pred CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224 743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 822 (1120)
Q Consensus 743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 822 (1120)
|.+.|..+.|-++|+++++++.|+.++||+... +..+......
T Consensus 341 -------------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~----------------------~v~ik~i~~~-- 383 (503)
T KOG0282|consen 341 -------------HLGAILDITFVDEGRRFISSSDDKSVRIWENRI----------------------PVPIKNIADP-- 383 (503)
T ss_pred -------------hhhheeeeEEccCCceEeeeccCccEEEEEcCC----------------------Cccchhhcch--
Confidence 667888999999999999999999999998632 2222211111
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCC---ceeeeecCCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~---~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
+.....++..+|++.+++.-+ |+.|.++.+... .....+.+|. +.-..+.||| ||++|++|+.||.+.+||..
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeech
Confidence 445567899999999999988 999999997532 2234577774 4567899999 99999999999999999999
Q ss_pred cceeeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEE
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWS 936 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd 936 (1120)
+-+++..+++|...+..+.|+|.. ..+|+++.||.|++|+
T Consensus 463 t~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999864 6799999999999996
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=243.82 Aligned_cols=287 Identities=16% Similarity=0.272 Sum_probs=229.0
Q ss_pred cccCCCCceEEEEEcC---CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 421 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~sp---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||.+.|++...+.+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4679999999999997 89999999999999998989998777 7999999999999998877 58999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
+|||.-+|..+++|. |..-|.+++|+. |.++|++|+.++.+|+||++..+. ...+.+|.+.|
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I-------------- 146 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI-------------- 146 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc--------------
Confidence 999999999999998 888999999854 457999999999999999986543 22333333333
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..+-|....+.+++++.|++||+||.+++
T Consensus 147 ---------------------------------------------------r~v~wc~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 147 ---------------------------------------------------RTVLWCHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred ---------------------------------------------------eeEEEeccCceEEeeccCCceEEEEeccC
Confidence 33333334444555555666666665554
Q ss_pred chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224 657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 736 (1120)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 736 (1120)
. .++.+
T Consensus 176 t-~v~sL------------------------------------------------------------------------- 181 (334)
T KOG0278|consen 176 T-EVQSL------------------------------------------------------------------------- 181 (334)
T ss_pred c-EEEEE-------------------------------------------------------------------------
Confidence 1 00000
Q ss_pred cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224 737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 816 (1120)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 816 (1120)
.
T Consensus 182 ---------------------------~---------------------------------------------------- 182 (334)
T KOG0278|consen 182 ---------------------------E---------------------------------------------------- 182 (334)
T ss_pred ---------------------------e----------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 817 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 817 ~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
....|+++.++++|++|.++..+.|.+||..+...++.++ -...|.+..++| +...+++|++|+.++.||..
T Consensus 183 ------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 183 ------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred ------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEecc
Confidence 2344566667777777777777788888888888877776 345699999999 77899999999999999999
Q ss_pred cceeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcc
Q 001224 897 VDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 941 (1120)
Q Consensus 897 ~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~ 941 (1120)
+++.+..+ ++|.++|.||.|+|||...++|+.||+|++|.+..++
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99998886 9999999999999999999999999999999987654
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1e-30 Score=256.52 Aligned_cols=274 Identities=18% Similarity=0.358 Sum_probs=222.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 672 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 672 (1120)
..+++|..|++|+|||..+..++..+.+|.+ .|.|+.| +.+.+++|+.|.+|++||.+++ ++++++-+
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG--SVLCLqy--d~rviisGSSDsTvrvWDv~tg-e~l~tlih------- 275 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTG--SVLCLQY--DERVIVSGSSDSTVRVWDVNTG-EPLNTLIH------- 275 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCC--cEEeeec--cceEEEecCCCceEEEEeccCC-chhhHHhh-------
Confidence 3589999999999999999999999987754 7877777 5679999999999999999999 66655533
Q ss_pred cCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccC
Q 001224 673 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 752 (1120)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 752 (1120)
T Consensus 276 -------------------------------------------------------------------------------- 275 (499)
T KOG0281|consen 276 -------------------------------------------------------------------------------- 275 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224 753 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 832 (1120)
Q Consensus 753 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~ 832 (1120)
|...|..+.|+. .++++++.|..+.+||+... +...+...+.+ |...|..+.|
T Consensus 276 ---HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp--------------------s~it~rrVLvG--HrAaVNvVdf 328 (499)
T KOG0281|consen 276 ---HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP--------------------TDITLRRVLVG--HRAAVNVVDF 328 (499)
T ss_pred ---hcceeEEEEEeC--CEEEEecCCceeEEEeccCc--------------------hHHHHHHHHhh--hhhheeeecc
Confidence 455666677754 35888888999999887321 11122223434 9999999998
Q ss_pred ccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccce
Q 001224 833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 911 (1120)
Q Consensus 833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 911 (1120)
|.+++++++ |.+|++|++.+++.++++.+|...|.|+.+ .++++++|+.|.+|++||+..|.+++.++||..-|
T Consensus 329 --d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv 403 (499)
T KOG0281|consen 329 --DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 403 (499)
T ss_pred --ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh
Confidence 556999998 999999999999999999999999999988 57899999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee
Q 001224 912 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 991 (1120)
Q Consensus 912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~ 991 (1120)
.++.| |.+.++||+.||+|+|||+.++..... | ...-|
T Consensus 404 RciRF--d~krIVSGaYDGkikvWdl~aaldpra----------------------~------------------~~~~C 441 (499)
T KOG0281|consen 404 RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRA----------------------P------------------ASTLC 441 (499)
T ss_pred hheee--cCceeeeccccceEEEEecccccCCcc----------------------c------------------ccchH
Confidence 99999 678999999999999999988532110 0 00112
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
+..+. .|++.|..+.| |...+++++.|.+|-|||..++-.-
T Consensus 442 l~~lv--~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 442 LRTLV--EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred HHhhh--hccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 33333 67889999999 7888999999999999998776544
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-28 Score=267.27 Aligned_cols=285 Identities=28% Similarity=0.482 Sum_probs=240.4
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEe
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 545 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 545 (1120)
++.+|.++|++++|+|+++ ++++++.|+.|++||+.+++....+..|...+..+.|.+. +.++++++.||.|++|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEEE
Confidence 4678999999999999998 7999999999999999999888899999999988888654 46899999999999999
Q ss_pred cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC
Q 001224 546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 625 (1120)
Q Consensus 546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 625 (1120)
+...+....+..+...+.++.+++++ ..+++++.+|.|++||+.+++....+..+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG---------------------RILSSSSRDKTIKVWDVETGKCLTTLRGH--TD 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC---------------------CEEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence 99876666666665556666655554 46777777999999999988888888744 34
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224 626 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 705 (1120)
Q Consensus 626 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1120)
.+.+++|+|++.++++++.++.|++||+.++ +....+
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~------------------------------------------ 173 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATL------------------------------------------ 173 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeE------------------------------------------
Confidence 6999999999999998888999999997543 100000
Q ss_pred ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224 706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 785 (1120)
Q Consensus 706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 785 (1120)
T Consensus 174 -------------------------------------------------------------------------------- 173 (289)
T cd00200 174 -------------------------------------------------------------------------------- 173 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC
Q 001224 786 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 864 (1120)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~ 864 (1120)
. .|...+.+++++|+++.+++++ ++.|++||+.+++.+..+..|
T Consensus 174 ---------------------------------~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 174 ---------------------------------T--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ---------------------------------e--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0 0455677888888888888777 899999999888888888788
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224 865 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 936 (1120)
...+.+++|+| ++.++++++.||.|++|++.+++....+.+|...|.+++|++++.+|++++.|+.+++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788998888899999999999999999999999999999999999999999999999996
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.5e-28 Score=267.79 Aligned_cols=246 Identities=27% Similarity=0.439 Sum_probs=209.1
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
.+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++... .+..|...+..+.|+|++++
T Consensus 6 ~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 6 KGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTY 65 (289)
T ss_pred cccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCE
Confidence 35999999999999999 58899999999999999876544 25678889999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEE
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 520 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 520 (1120)
|++++.||.|++|++.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 9999999999999999876554 5778999999999999977 7888888999999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
++|++. +.++++++.|+.|++||+...+....+..+...+.++.++|++ +.+++++.
T Consensus 141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~ 197 (289)
T cd00200 141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSS 197 (289)
T ss_pred EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecC
Confidence 998765 4688888889999999998776666666555555555555554 57888888
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++.|++||+.+++.+..+..+. ..+.++.|+|++.++++++.+|.|++|++.++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 9999999999988888775443 37899999999999998888999999998654
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-29 Score=238.64 Aligned_cols=295 Identities=18% Similarity=0.283 Sum_probs=229.4
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.||..+++.+.++.+|.+|.+|+.|.++.||--.+|+.+. ++.||.+.|+|+..+.+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 588999999999999999999999999999999998888776 8999999999999999999 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-----CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
|+++|+++.+++ ...+|..+.|++.. ++++.... .+.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999998 56788888886544 34443332 23444444432110
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
+....++...+..+. ..++.+-|+|-+++|++|..||.|..||+++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111334444444333 3688899999999999999999999999988
Q ss_pred cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
+.+.+...
T Consensus 179 g~~~v~s~------------------------------------------------------------------------ 186 (327)
T KOG0643|consen 179 GKELVDSD------------------------------------------------------------------------ 186 (327)
T ss_pred Cceeeech------------------------------------------------------------------------
Confidence 73221100
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 815 (1120)
T Consensus 187 -------------------------------------------------------------------------------- 186 (327)
T KOG0643|consen 187 -------------------------------------------------------------------------------- 186 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC------
Q 001224 816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 888 (1120)
Q Consensus 816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 888 (1120)
..|...|+.+.+++|..++++++ |.+-++||..+.++++++. ...++++.+++|.....+..|+.+-
T Consensus 187 -----~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 187 -----EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred -----hhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence 01667788888999999999999 8999999999999999987 4567999999994444444444332
Q ss_pred -------cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 889 -------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 889 -------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
.-++|++...+.+..+++|-++|++|+|+|||+..+||+.||.|++.-.+.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 122333333456677899999999999999999999999999999987665
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.3e-30 Score=248.40 Aligned_cols=292 Identities=19% Similarity=0.298 Sum_probs=238.4
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....+.+..|+|||.++++++-||.|.+|++.+++...+-+..+. . ..+. ++..|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d-~fMM-------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------D-NFMM-------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------c-ceee-------cccceEEEeeccc
Confidence 456678899999999999999999999999866554333332221 1 1111 6889999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
..++|+|+ ||.|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.++++.-+.+|++++.++||++.|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999987 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEcCCcee
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLEC 991 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~~-~d~~v~i~d~~~~~~ 991 (1120)
..|++||..+++++.||+|+||+..+.++. ..+.... ...+|..+..-|. -..++++ ..++|.|-++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~-----~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECL-----STFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhh-----hhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 999999999999999999999999996653 3332211 1246777777664 4455554 66788888875 777
Q ss_pred eeccccCCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE
Q 001224 992 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1070 (1120)
Q Consensus 992 ~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~ 1070 (1120)
++.+..+.. .+..-+.+.||.|.++++.++|+.++.|.+.+|.+...+..+.. -++.++-+|+ .+.|+
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk----------dvIGl~HHPH-qNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK----------DVIGLTHHPH-QNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc----------cccccccCcc-cchhh
Confidence 777764322 45677788999999999999999999999999999988772222 2346889995 68999
Q ss_pred EEeCCCcEEEEec
Q 001224 1071 LGLSDGGVHVFEP 1083 (1120)
Q Consensus 1071 s~~~Dg~v~vW~~ 1083 (1120)
+-++||.+++|..
T Consensus 496 sYsEDgllKLWkp 508 (508)
T KOG0275|consen 496 SYSEDGLLKLWKP 508 (508)
T ss_pred hhcccchhhhcCC
Confidence 9999999999963
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.6e-28 Score=297.77 Aligned_cols=253 Identities=14% Similarity=0.184 Sum_probs=200.9
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 438 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 438 (1120)
...|...|++++|+|+|+ ++|+|+.|++|+|||+........ ........+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCC
Confidence 345899999999999999 599999999999999864211000 0000000122 346899999987 58
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
.+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++.++..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999887655 6789999999999997 666 7999999999999999999999888855 67
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|..+.|. + +.+++
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~---------------------~~~lv 676 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D---------------------SSTLV 676 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---------------------CCEEE
Confidence 88888853 456899999999999999998754 344556666666666664 2 34799
Q ss_pred EEeCCCeEEEEECCCC------ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 597 AAGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++.|+.|++||+..+ ..+..+.+|. ..+.+++|++++.+|++|+.|+.|++|+....
T Consensus 677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999743 4566776554 46888999999999999999999999997544
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5e-28 Score=299.34 Aligned_cols=321 Identities=11% Similarity=0.150 Sum_probs=240.2
Q ss_pred CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecC
Q 001224 729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 808 (1120)
Q Consensus 729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 808 (1120)
+|.+++|+............-. ...|...|.+++|+|+|+++++++.|+.|++|++...... +.. .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~--~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~~----------~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGD--LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GRD----------I 522 (793)
T ss_pred hhhhhhhcccceEEEEeecccc--ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--ccc----------c
Confidence 4556666665433211111101 1337889999999999999999999999999997431100 000 0
Q ss_pred CCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC
Q 001224 809 PSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 886 (1120)
Q Consensus 809 ~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 886 (1120)
..... .+ .+...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus 523 --~~~~~-~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 523 --HYPVV-EL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred --ccceE-Ee---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 00000 01 1346788999987 478899988 9999999999999999999999999999999767899999999
Q ss_pred CCcEEEEEeecceeeEeecccccceEEEEEc-cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 965 (1120)
Q Consensus 887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 965 (1120)
||.|++||+.++..+..+..| ..|.++.|+ +++.+|++|+.||.|++||+..... ......+|.. .|..+.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~~---~V~~v~ 668 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHSK---TVSYVR 668 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCCC---CEEEEE
Confidence 999999999999888888765 679999995 5799999999999999999987432 2233345553 789999
Q ss_pred EccCCcEEEE-EeCCeEEEEEcCCc------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeee
Q 001224 966 FHQDQIHFLV-VHETQLAIFETTKL------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus 966 fspdg~~la~-~~d~~v~i~d~~~~------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~ 1038 (1120)
|. ++.+|++ +.|+.|++||+..+ ..+..+. +|...+..++|++++.+|++|+.|+.|+||+......+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 5667776 68999999999753 3445544 7899999999999999999999999999999877655533
Q ss_pred eCCCcc--cC---CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1039 INPSAY--LP---AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1039 ~~~~~~--~~---~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
+..... .. ..+....|. +++|+| ++.+|++|+.||.|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 221110 00 011122244 899999 6899999999999999986
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=217.58 Aligned_cols=275 Identities=17% Similarity=0.250 Sum_probs=211.4
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
..+.++.....|.+++|+|.|. |.|+|++.++.+|-....-..+.. -.+.....+....+-.+.|.+.|+|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEec
Confidence 3456777889999999999999 799999999999876543221110 00001111122223456799999999999
Q ss_pred CCCCeEEEEECCCeEEEEEc--cCCceeeeeeeecccccCeEEEEEcCC---CCceEEEEec-CCCcEEEEECCCCceeE
Q 001224 436 PDGSLFGVAYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~s-~d~~i~vwd~~~~~~~~ 509 (1120)
|+|.+||+|+.|.+|++.-. ++......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 99999999999999998644 444444455578889999999999754 233 566554 68889999999999999
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~ 589 (1120)
.+.||++.|.++- +-++.++++|+.|.+|++||++-..+..++... +.-.|.....+..++++
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd 240 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence 9999999998874 234579999999999999999865554433221 11123334467778888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
|.|+.|++|-.|....+||++.++.++.+..|. ..|.|+.|+|...++++++.|..|++-|+..
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCCc--cceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 888899999999999999999999999997664 4799999999999999999999999998754
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.6e-28 Score=232.37 Aligned_cols=276 Identities=14% Similarity=0.184 Sum_probs=203.3
Q ss_pred CcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCC-CcccccccccCCCCceEEE
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC-SMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l 432 (1120)
..+..++-.|++++.+.+|||||. |+|+|+.|..|+|.|++.--... .+..+..-... ..|.. ..+-.|.++|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvI-RTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVI-RTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceE-eehhhccCcccce
Confidence 334556667999999999999999 79999999999999997211000 00000000011 11222 2477899999999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF- 511 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~- 511 (1120)
.|+|....|++|+.|++|+++|.......+.++.++ ...+|.++.|.|.|. +++.|.+--++++||+.+-+|...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 999999999999999999999998654333333333 456899999999999 7999999999999999998886544
Q ss_pred --eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224 512 --EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589 (1120)
Q Consensus 512 --~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~ 589 (1120)
..|.+.|+++.+ ++.+.+.++++.||.|++||--+.+++.++... |.+..++...|.
T Consensus 256 Pd~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-------------------H~gsevcSa~Ft 314 (430)
T KOG0640|consen 256 PDDQHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-------------------HGGSEVCSAVFT 314 (430)
T ss_pred cccccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHhh-------------------cCCceeeeEEEc
Confidence 468999999886 456689999999999999998877776655321 222345555566
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC---CcCeEEEcCCCCEEEEEEC-CCcEEEEEccCc
Q 001224 590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDG 656 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~ 656 (1120)
.+++++++.+.|..+++|.+.+++++..+.+.+... .-+...|+....+++.-.. .+.+.-||.+++
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 666699999999999999999999999997653221 1234556666666655433 467788887766
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.2e-29 Score=233.55 Aligned_cols=299 Identities=17% Similarity=0.269 Sum_probs=252.3
Q ss_pred ccccccEEEEEEc---CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224 754 NLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 830 (1120)
Q Consensus 754 ~~~~~~i~~l~~s---~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l 830 (1120)
.+|..+|-.++|+ |+|-+|++++.||.-.+ .+-.+|..+.. +. +|.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCcceeee
Confidence 6799999999997 58999999999876443 23345554443 22 499999999
Q ss_pred EEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeEeecccc
Q 001224 831 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 908 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~ 908 (1120)
+++.+....|+++ |-+-++||.-++..+..+. |..-|.+++|+. |.++|++|+.+..+||||++.. .....+.+|.
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999999999988 8999999999999999887 888899999999 9999999999999999999874 3567789999
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~ 988 (1120)
+.|..+.|....+.++|.+.|++||+||..+++..+...+ . ..|+++-.++||++|.++..+.|..||..+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--N-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--C-------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence 9999999999889999999999999999999765332221 1 368999999999999999999999999999
Q ss_pred ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCE
Q 001224 989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1068 (1120)
Q Consensus 989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~ 1068 (1120)
...++.+.. ...|.+..++|+...+++|++|..++.||..+|+.+.... .||.+. |. ++.|+| ||..
T Consensus 215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gp-Vh--cVrFSP-dGE~ 281 (334)
T KOG0278|consen 215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGP-VH--CVRFSP-DGEL 281 (334)
T ss_pred ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCCc-eE--EEEECC-CCce
Confidence 999888764 5689999999999999999999999999999999997742 243333 55 899999 7999
Q ss_pred EEEEeCCCcEEEEecCCCC--CCCCCCCCCCCCCC
Q 001224 1069 FALGLSDGGVHVFEPLESE--GKWGVPPPVDNGST 1101 (1120)
Q Consensus 1069 l~s~~~Dg~v~vW~~~~~~--~~~~~~~p~~~~~~ 1101 (1120)
.++||.||+|++|....++ +.|.-..|-+.+.-
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred eeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 9999999999999988777 67777777554443
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=224.67 Aligned_cols=277 Identities=16% Similarity=0.237 Sum_probs=230.6
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE--eeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
.+++|...|.+|+|+.+|. .+++|+.|+++.+|++..++.... ..+|.+.|..++|++... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5778999999999999999 699999999999999998866553 468999999999988655 68999999999999
Q ss_pred EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623 (1120)
Q Consensus 544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 623 (1120)
||.+..++.......... ..+.|+|+|+++++++.|..|.+.|.++.+.+...+...
T Consensus 92 wd~r~~k~~~~i~~~~en----------------------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~- 148 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGEN----------------------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF- 148 (313)
T ss_pred EEeccCcEEEEeeccCcc----------------------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence 999988876655443332 235677777799999999999999999988777665433
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224 624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 703 (1120)
Q Consensus 624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1120)
.+..++|+.++.+++.....|+|.|.....- +.+..
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~s----------------------------------------- 184 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQS----------------------------------------- 184 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEecccc-ccccc-----------------------------------------
Confidence 4677888888888777777788887764322 10000
Q ss_pred ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224 704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 783 (1120)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 783 (1120)
T Consensus 185 -------------------------------------------------------------------------------- 184 (313)
T KOG1407|consen 185 -------------------------------------------------------------------------------- 184 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224 784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 862 (1120)
Q Consensus 784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 862 (1120)
+. .|.....||.|+|+|+++|+|+ |..+.+||++..-+++.+.
T Consensus 185 ----------------------------------i~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 185 ----------------------------------IK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred ----------------------------------cc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 01 1777788899999999999999 9999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC
Q 001224 863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930 (1120)
Q Consensus 863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 930 (1120)
.+.-+|..+.||. ||++||+|++|..|-|=++++|..+..++ +.++-..|+|+|...+||.++.|.
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 9999999999999 99999999999999999999999888887 778899999999999999887763
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-27 Score=236.76 Aligned_cols=251 Identities=16% Similarity=0.299 Sum_probs=202.1
Q ss_pred CcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
+.+....+-|.+.|.+|... ++ .+.+|+.||.++|||.. |+... .+.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence 44556677899999999998 55 49999999999999987 44443 3789999999888
Q ss_pred EcCC---CCeEEEEECCCeEEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-----
Q 001224 434 WSPD---GSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 504 (1120)
Q Consensus 434 ~spd---g~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~----- 504 (1120)
|--. ...+++++.|.++++|.++.+... .....-.||...|-+|+..++|. .+++|+.|.+|.||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 8543 336999999999999999877543 22223459999999999999999 699999999999999321
Q ss_pred --------------------CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeE
Q 001224 505 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 564 (1120)
Q Consensus 505 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 564 (1120)
+.++.++.||..+|.++.|.. ...+++++-|.+|+.||+.+++...++...
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ 300 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------ 300 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC------
Confidence 235667889999999999965 258999999999999999987766554432
Q ss_pred EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCCCcCeEEEcC-CCCEEE
Q 001224 565 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 640 (1120)
Q Consensus 565 ~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 640 (1120)
..+.++.++|..++|++|+.|..+++||.+++. ....+.+| ...|.++.|+| +...|+
T Consensus 301 ----------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 301 ----------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ----------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence 255666677777799999999999999998764 23444444 55899999999 567789
Q ss_pred EEECCCcEEEEEccCc
Q 001224 641 VSTNDNGIKILATSDG 656 (1120)
Q Consensus 641 ~~~~dg~i~iwd~~~~ 656 (1120)
+|+.|+++++||+++.
T Consensus 363 S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRST 378 (423)
T ss_pred EEecCCeEEEEEeccC
Confidence 9999999999999876
No 73
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=4.3e-26 Score=240.66 Aligned_cols=631 Identities=16% Similarity=0.182 Sum_probs=342.2
Q ss_pred cccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceee---eeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224 421 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 496 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~---~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~ 496 (1120)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-... ....+.+..-.|.++.|.|.... |+..+..|.
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 5889999999999999 78899999999999999998543211 11223344557899999998775 444455789
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEE
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
++|||+.+++.+..+.+|...|.+..| +.||.+|++.+.|+.|+|||.+... .++...+|++. .|.+
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-------rdsR--- 219 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-------RDSR--- 219 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccc-------hhhe---
Confidence 999999999999999999999999988 5778999999999999999998743 44444444431 1111
Q ss_pred ecccccceeEEEEcCCCCEEEEEe----CCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEE
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIK 649 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 649 (1120)
+.|--+-..|++.+ .-..|++||.+. +..+.++...... .|.---|.||.++|+.++ .+.++.
T Consensus 220 ----------v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 220 ----------VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ----------eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEE
Confidence 22322223466544 356799999875 3456666544332 355567889888766554 467788
Q ss_pred EEEccCcchhhhhcccccccccccCCCCCC--Ccccchhhh-------HhhhhccccccccccccccCCCCCcccccCC-
Q 001224 650 ILATSDGIRLLRTFENLAYDASRTSENSKP--TISPISAAA-------AAAATSAGLADRAASMVSIPGMNGDVRSLAD- 719 (1120)
Q Consensus 650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 719 (1120)
.+.+......+.....+..+.......-.+ ++..+..-. ..+.+... ...|+.....|..+......
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~---y~VPRksyrdFH~DLfPeT~G 365 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIP---YIVPRKSYRDFHSDLFPETRG 365 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecc---cccchhhhhhhhhhhCccccC
Confidence 887765422221111111110000000000 000000000 00000000 00011111111000000000
Q ss_pred -------CcceeeccCCCcceeeecccCCCCc-----c------------ce-eec-----------------cCC----
Q 001224 720 -------VKPRITEESNDKSKVWKLTELSEPN-----Q------------CR-SLR-----------------LPE---- 753 (1120)
Q Consensus 720 -------~~~l~~~~~d~~i~vw~~~~~~~~~-----~------------~~-~~~-----------------~~~---- 753 (1120)
+..+. +.+..+.-..+....... . .. .+. .|.
T Consensus 366 ~~p~~~ageWln--G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~q 443 (1012)
T KOG1445|consen 366 AEPGCTAGEWLN--GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQ 443 (1012)
T ss_pred CccCcCccceec--CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccC
Confidence 00000 000000000000000000 0 00 000 000
Q ss_pred --ccccccEEEEEEcC----CC------ceEEEeccCc--------eEEEeeecc-----------------cccCC---
Q 001224 754 --NLRATKISRLIFTN----SG------NAILALASNA--------IHLLWKWQR-----------------TERNS--- 793 (1120)
Q Consensus 754 --~~~~~~i~~l~~s~----~g------~~l~~~~~dg--------~i~vw~~~~-----------------~~~~~--- 793 (1120)
......+..+.+-| +| ..=.+-+... .+.+-.-.. ++.-+
T Consensus 444 paV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~ 523 (1012)
T KOG1445|consen 444 PAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQP 523 (1012)
T ss_pred CCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCC
Confidence 00000111111100 00 0000000000 000000000 00000
Q ss_pred -C--Cccc-ccc------Cc----eee------cCCCCCcccc-----cCCCCCCCCCccEEEEccCCCEEEE---EeCC
Q 001224 794 -S--GKAT-ASV------AP----QLW------QPPSGIMMTN-----DVTDSNPEEAVPCFALSKNDSYVMS---ASGG 845 (1120)
Q Consensus 794 -~--~~~~-~~~------~~----~~w------~~~~g~~~~~-----~~~~~~~~~~v~~l~~s~d~~~l~~---~sdg 845 (1120)
. +..+ ++. .+ .+. .-..|..... .+......-+-.+=-|+.+.+++|+ |+.|
T Consensus 524 ~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG 603 (1012)
T KOG1445|consen 524 PVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGG 603 (1012)
T ss_pred CcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCc
Confidence 0 0000 000 00 000 0000100000 0000000011112234445566665 3478
Q ss_pred cEEEEEcCCC-ceeee-ecC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-------eeEeecccccceEEE
Q 001224 846 KISLFNMMTF-KTMAT-FMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-------VKSKLKGHSKRITGL 914 (1120)
Q Consensus 846 ~i~vwd~~~~-~~~~~-~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-------~~~~l~~h~~~V~~l 914 (1120)
.|.||++... ++.-. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+. .-..+.+|...|+++
T Consensus 604 ~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~sl 683 (1012)
T KOG1445|consen 604 VIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSL 683 (1012)
T ss_pred eEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEE
Confidence 9999999742 22111 111 245699999999999999999999999999997643 335678999999999
Q ss_pred EEccC-CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceee
Q 001224 915 AFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 992 (1120)
Q Consensus 915 ~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~ 992 (1120)
.|+|- ...|++++.|.+|++||+.+.+. ...+.+|.. .|..++|||||+.+|+ +.||+|++|+.++++..
T Consensus 684 RfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 684 RFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred EecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC---ceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 99985 47899999999999999998553 344567765 8999999999999999 89999999999877643
Q ss_pred eccccCCCCCCeeEEEECCCCcEEEEEEcC----CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCE
Q 001224 993 KQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1068 (1120)
Q Consensus 993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~ 1068 (1120)
..-....-...-..|.|.-||+++++.+.| ..|.+||..+..+........... -.++--.|.++.+-+
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-------ps~LvP~YD~Ds~~l 828 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-------PSPLVPHYDYDSNVL 828 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-------CccccccccCCCceE
Confidence 221111113344567888899999988877 468999987654321111000000 112234466655667
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 001224 1069 FALGLSDGGVHVFEPLESEGKWGVPPPV 1096 (1120)
Q Consensus 1069 l~s~~~Dg~v~vW~~~~~~~~~~~~~p~ 1096 (1120)
+++|-.|..|.+|.+...+.-+-.-.|+
T Consensus 829 fltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 829 FLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred EEecCCCceEEEEEecCCCceeeecccc
Confidence 8899999999999988766333333333
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-27 Score=241.59 Aligned_cols=286 Identities=18% Similarity=0.276 Sum_probs=235.7
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....|.+++|+|...+=++.+..-.+.+|+..+ -..... +. .....+.++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhh-HH--hhccceeEEEeecC
Confidence 557899999999766544444455666666422 111110 11 15678999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 914 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 914 (1120)
|+++|+|+ .|.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|.+.|.|.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778899999999999999999999999999999999999999988777899999999999
Q ss_pred EEccCC-CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeee
Q 001224 915 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 993 (1120)
Q Consensus 915 ~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~ 993 (1120)
+|+|-. ..++|||.||+|++||+.... ........| .+|..+.|-|.|..+|+++...|+|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999875 478999999999999998843 233444434 37999999999999999999999999999766554
Q ss_pred ccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224 994 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
.... .|...|+|+++..+++.|++|+.|+.|+|||+.+.+.+..+. .|+. | ++++-+| |++.++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----v--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----V--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----e--eeEEecC-CCceEEEec
Confidence 4332 489999999999999999999999999999999999998877 5543 4 4899999 679999999
Q ss_pred CCCcEEEEecCCCC
Q 001224 1074 SDGGVHVFEPLESE 1087 (1120)
Q Consensus 1074 ~Dg~v~vW~~~~~~ 1087 (1120)
.||.+.+=+....+
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999888655544
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.9e-27 Score=240.05 Aligned_cols=266 Identities=18% Similarity=0.275 Sum_probs=213.7
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeec----cCCCCcccccccccCCCCceEEE
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD----LGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
....-.|.-.|+||+++||+++ ..+++.+|+|.=|++.+|+.... +|. ++....+....- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 4455569999999999999996 99999999999999999986521 111 111122222222 4899999999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
+.|+||+|||+|+.|..|.||+.++.+.+. .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988666 6899999999999987666 48999999999999999999999999
Q ss_pred ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
||.+.|.++...... ..+..|+.|+++++|++.. +....+.++...+.+++|-.+.
T Consensus 284 GHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~--------------------- 339 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE--------------------- 339 (479)
T ss_pred CCccceeeechhccc--ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc---------------------
Confidence 999999998754332 4555566999999999943 4445556666666666665543
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCC----------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
++++|+.+|.|.+|++...+++.+.....+ ...|++++..|...++++|+.+|.|++|-+.++.+
T Consensus 340 -HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 340 -HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred -ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 599999999999999999998877652211 12688999999999999999999999999988744
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=244.59 Aligned_cols=257 Identities=18% Similarity=0.274 Sum_probs=212.4
Q ss_pred CCCCCcceeeecc-CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCc
Q 001224 350 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 428 (1120)
Q Consensus 350 ~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 428 (1120)
.+.+|......+. |.+.|..+.|-++... |++|+.|..|.+|++..++.-. ..+|.|..++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCC
Confidence 3444566666666 9999999999999774 9999999999999998766211 1157888899
Q ss_pred eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 508 (1120)
Q Consensus 429 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~ 508 (1120)
|+++.|.++++++++++.|+.+++|++...+... +|.||.+.|+++.|..... .+++|+.|.+|+.||+..+.|.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999977554 7999999999999998877 4999999999999999999998
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 588 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~ 588 (1120)
+++-. ...+..|+.. ...+++|-.|+.|++||.++..+......++ .|+++..+++|
T Consensus 297 kt~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 297 KTVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG----------------- 353 (459)
T ss_pred ccccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC-----------------
Confidence 87652 3445555542 2578899999999999999887777666554 56666666655
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..+++++.|.++.+.|+++.+....+...+. ....+.+.|||++.|+++|+.||.|+||++.++
T Consensus 354 ----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 354 ----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred ----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 4788999999999999999998888865432 124788999999999999999999999999887
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.1e-26 Score=231.94 Aligned_cols=301 Identities=16% Similarity=0.238 Sum_probs=223.6
Q ss_pred CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCC-CceEEEEecCCCcEEEEEC
Q 001224 424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPN-KQLCVITCGDDKTIKVWDA 502 (1120)
Q Consensus 424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~~~~l~s~s~d~~i~vwd~ 502 (1120)
-|.+.|.++... ++++++|+.||.++|||..+.. . +.+.||.++|.+++|--.+ ....+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-I---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-E---EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 488899999988 8999999999999999998753 2 2588999999988874322 2225999999999999999
Q ss_pred CCCce----eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc------eeEEEEcCCCC
Q 001224 503 TNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW------CTTMAYSADGT 572 (1120)
Q Consensus 503 ~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~~g~ 572 (1120)
+.++. +....||...|.++.. .++|..+++|+.|.+|.+|+.... ..-.+...... -..-.-.....
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCC-ccccccccchhhhhhhhhhhcccccCce
Confidence 87754 3344699999999986 455679999999999999993221 11000000000 00000000000
Q ss_pred eEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
..+.||++ .+..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++|+.++|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 22333333 556666665 4569999999999999999999998887554 489999999999999999999999999
Q ss_pred ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224 653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 732 (1120)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 732 (1120)
.+++.. .+
T Consensus 329 PR~~~g------------------------------------------------------------------------s~ 336 (423)
T KOG0313|consen 329 PRTGDG------------------------------------------------------------------------SV 336 (423)
T ss_pred CCCCCC------------------------------------------------------------------------ce
Confidence 876510 00
Q ss_pred eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224 733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812 (1120)
Q Consensus 733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 812 (1120)
....
T Consensus 337 ----------------------------v~~s------------------------------------------------ 340 (423)
T KOG0313|consen 337 ----------------------------VSQS------------------------------------------------ 340 (423)
T ss_pred ----------------------------eEEe------------------------------------------------
Confidence 0000
Q ss_pred cccccCCCCCCCCCccEEEEccCCC-EEEEEe-CCcEEEEEcCCCc-eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224 813 MMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 889 (1120)
Q Consensus 813 ~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 889 (1120)
+ .+|.+.|.++.++|... .|++|+ |+++++||+++.+ .+..+.+|...|.++.|. ++.+|++|+.|.+
T Consensus 341 -----~--~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 341 -----L--IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNK 411 (423)
T ss_pred -----e--ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcce
Confidence 1 12888889999998665 456677 9999999999876 889999999999999998 5779999999999
Q ss_pred EEEEEe
Q 001224 890 IQIYNV 895 (1120)
Q Consensus 890 v~vwd~ 895 (1120)
|+|+.-
T Consensus 412 l~i~~~ 417 (423)
T KOG0313|consen 412 LRIFKG 417 (423)
T ss_pred EEEecc
Confidence 999864
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-26 Score=218.31 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=198.2
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
+.+.+|..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|+|+..+.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 34567999999999999999 799999999999999999999884 8899999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEe-----cCCCcEEEEECC-------CC
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-----GDDKTIKVWDAT-------NG 505 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-----s~d~~i~vwd~~-------~~ 505 (1120)
.++|++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.. +..+.|.++|++ ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998763 2 24578999999999994 3333 234679999998 45
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
++...+..+...++.+.|.+.. ++|++|..||.|..||++++.... ....|...|+.+.+++|..
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T------------ 203 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT------------ 203 (327)
T ss_pred CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc------------
Confidence 6677888888999998886554 799999999999999999865443 3355666666666666664
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 645 (1120)
++++++.|.+-++||..+-+.+.++.... ++++.+++|-...++.|+..
T Consensus 204 ---------~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 204 ---------YFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---------eEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCCc
Confidence 89999999999999999999999987553 59999999988777777643
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-27 Score=260.66 Aligned_cols=265 Identities=14% Similarity=0.185 Sum_probs=206.2
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe------------------------------e--------
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------R-------- 403 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~------------------------------~-------- 403 (1120)
.|.+.|+++.||+||+| ||+|+.||.|+||.+...+.... .
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 59999999999999996 99999999999999976211000 0
Q ss_pred ---ceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc
Q 001224 404 ---NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480 (1120)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 480 (1120)
...+.+..-.-.+.+...+.||.+.|.+++||.++ +|++++.|.+|++|++...++++ .-.|.+-|+||+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 00000000111122334688999999999999765 89999999999999999998887 33599999999999
Q ss_pred CCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--
Q 001224 481 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-- 558 (1120)
Q Consensus 481 ~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 558 (1120)
|-+.+ |+++|+-||.||||++...+.+.-...+ .-|+++|+.| +|+..+.|+.+|.+++|+....+.......+
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc--CCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 98777 9999999999999999888877655544 7899999855 5789999999999999998875544332211
Q ss_pred ------CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEE
Q 001224 559 ------GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 632 (1120)
Q Consensus 559 ------~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 632 (1120)
...|+++.|.|... ..+++.+.|..|+|+|.++..++..+++......-....|
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~--------------------~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDP--------------------DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASF 554 (712)
T ss_pred cCccccCceeeeeEecCCCC--------------------CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeE
Confidence 12445554444332 3688889999999999999999999987766666677899
Q ss_pred cCCCCEEEEEECCCcEEEEEccCc
Q 001224 633 NKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 633 s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.||++|++++.|..|++|+....
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCCC
Confidence 999999999999999999997543
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-27 Score=257.96 Aligned_cols=275 Identities=15% Similarity=0.241 Sum_probs=213.8
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeeccccc---------------CCCCcccccc------------------
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGKATASV------------------ 801 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~---------------~~~~~~~~~~------------------ 801 (1120)
.|.+.|.++.||+||++|+++|.|+.|+||.+..... ...+......
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876210 0000000000
Q ss_pred -CceeecCCCCCc---ccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecC
Q 001224 802 -APQLWQPPSGIM---MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876 (1120)
Q Consensus 802 -~~~~w~~~~g~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 876 (1120)
.-.+.+.....+ ....+ .+|...|..+.||.++ +|++++ |.+||+|++...+++..|. |...|+|++|+|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 000111111111 11112 3499999999999876 677777 9999999999999999998 9999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCC
Q 001224 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 956 (1120)
Q Consensus 877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 956 (1120)
|.+|+++|+-||.||||++...+.+.-...+ .-|++++|.|||+..+.|+.+|.+++|+....+.....-+....+...
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 9999999999999999999877755444434 789999999999999999999999999999877666555555555444
Q ss_pred CCCCCcEEEEccCC--cEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 957 TAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 957 ~~~~i~~~~fspdg--~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
....|+.+.|.|.. +.|+++.|..|+|||.....++..+..-.....-....|+.||++|++|++|..|+||+.....
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 44579999999754 4888899999999999888888877732334455678999999999999999999999985443
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8.1e-27 Score=264.71 Aligned_cols=304 Identities=18% Similarity=0.245 Sum_probs=239.8
Q ss_pred ccccEEEEEEcCCCceEEEec--cCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 756 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
+...|.++..+|+|..+++++ .||.+++|+.+.--. ....++..-...+. ....|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~---~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC---TMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe---eeccccCceeEEEEC
Confidence 455689999999999999999 788999998742110 00111211011111 112399999999999
Q ss_pred cCCCEEEEEe-CCcEEEEEcCC------------------CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 834 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
|||++||+|+ |+.|.||+... ++....+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 68899999762 235677899999999999999 999999999999999999
Q ss_pred eecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
..+.+.+..+.+|.+.|-.+.|.|-|++|||-+.|++|+||++...... ..+..+-.+.+.....+.+.|||||.+|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCeec
Confidence 9999999999999999999999999999999999999999997764332 22333333333345678999999999999
Q ss_pred E--EeC---CeEEEEEcCCceeeeccccCCCCCCeeEEEECCC-----Cc------------EEEEEEcCCcEEEEEcCC
Q 001224 975 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQ------------LVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 975 ~--~~d---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~------------~l~s~~~Dg~v~iwd~~~ 1032 (1120)
+ +.+ ..+.|.+..+.+.-..+. +|.+++.+++|+|. .+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9 333 368898888777766666 89999999999981 11 578999999999999988
Q ss_pred cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1033 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1033 ~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.+++..+. . -.+-.++.++|+| ||..|+.+|.||+|.+..+++.|
T Consensus 314 ~RPl~vi~--~-------lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH--N-------LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh--h-------hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 77775443 1 1112345999999 79999999999999999998776
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=216.26 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=223.9
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.. .....++|.+.|-.++|.|.... .+++++.|++|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence 46789999999999999999999999999999999987533 34457899999999999998777 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
|++.++++.......+.+. ++| +++|.+++.++.|..|.+.|.++.+....... ..
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~-------------------- 148 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KF-------------------- 148 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cc--------------------
Confidence 9999999998886666666 455 45668999999999999999987554433221 11
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
.+.-++|+.+++.++.....|.|.|.....-+++..++.|. ..+.|+.|+|+|+++|+|+.|-.+.+||+... -+.
T Consensus 149 -e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 149 -EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred -eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence 23334455455677777778999999999999999998775 47889999999999999999999999997543 111
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
+.+.
T Consensus 225 R~is---------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 225 RCIS---------------------------------------------------------------------------- 228 (313)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 887 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 887 (1120)
.++-+|+.+.||.||++||+|+ |..|-|-++++|..+..++ +.++...|+|+| ...+||.+++|
T Consensus 229 -RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 229 -RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred -cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 0566777788888888888888 7788888888888888776 788899999999 88899988866
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=237.98 Aligned_cols=247 Identities=21% Similarity=0.253 Sum_probs=201.2
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
.....|++++|||...+=+|+.+ .-.|.||+..+..... .+..-...|+++.|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEE
Confidence 35689999999996654344433 2789999988765543 244456789999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 521 (1120)
|+|...|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. ++++|++|+.+++||+.+......+.+|++.|.+.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999977754444 68899999999999999887 89999999999999999999877999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 601 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 601 (1120)
+|++-. ++.++||+.||.|++||++.......--.|+.+|..+.+-|.|. .+++++ .
T Consensus 160 ~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-G 216 (487)
T KOG0310|consen 160 DISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-G 216 (487)
T ss_pred ccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-C
Confidence 998754 47999999999999999998765554556777888888777765 455554 5
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..|++||+.+|........ .|...|+|+.+..++..|++|+-|+.+++||+.+-
T Consensus 217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 6899999996655444332 13457999999999999999999999999996543
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=218.24 Aligned_cols=286 Identities=18% Similarity=0.261 Sum_probs=224.7
Q ss_pred eEEEEec--CCCeEEEEEeC-----CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-CC
Q 001224 368 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GS 439 (1120)
Q Consensus 368 ~~v~~sp--dg~~lla~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~ 439 (1120)
.++.||| +++..+|++.. .|++.|-++..++.+.. ++-+| -.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence 5688998 44533444433 57899999975554432 22222 3458999999994 56
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
.+++++.||+++|||..-. -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...+.-++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888999999999995432 2355578899999999999998777 677889999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
...|+|... ..+++++.|+++++||++..+....+..|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999988654 6999999999999999998887777888887777777765544 5789999
Q ss_pred CCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCC
Q 001224 600 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 677 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1120)
.|+.|++||++.-+ ++..+.+| .-.|+.+.||| ....|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 99999999998754 56666555 44799999999 467899999999999999987767777777666543211
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224 678 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 736 (1120)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 736 (1120)
.++ ..+..++++.+.|..+++|+
T Consensus 285 --Dws----------------------------------~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 285 --DWS----------------------------------LFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred --ccc----------------------------------cccCceeeecccccceeeec
Confidence 111 12578899999999999997
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.6e-26 Score=257.88 Aligned_cols=237 Identities=18% Similarity=0.332 Sum_probs=209.7
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
.+...+.|..|. ++ .+.+|+.|.+|++||..++..+.. -+.||.+.|++++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 367899999999 44 499999999999999999988763 388999999999999889999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 521 (1120)
++|+.|.+++|||..+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999877 78899999999987543 68899999999999999999999999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 601 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 601 (1120)
..+ +.++++|+.|++|++||+.+.+++.++.+|...|.++.+.+. +++++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----------------------~~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----------------------NRLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----------------------ceEEeeeec
Confidence 864 369999999999999999999999999999999998877653 259999999
Q ss_pred CeEEEEECCCC-ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 602 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 602 g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++|++||+.+. +++.++.+|.. .+. .+...+++|++++.|++|++||..++
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS--LVS--SLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc--ccc--ccccccceeEeccccccEEEeecccC
Confidence 99999999999 99999987755 343 33446789999999999999998777
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=236.83 Aligned_cols=300 Identities=17% Similarity=0.247 Sum_probs=228.5
Q ss_pred ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
.+|...|.++++.|.|..+++|+-|..|++||++.-..+ -.. .....+. ....|.++.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------~~~-fr~l~P~--E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------MRS-FRQLQPC--ETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-----------------chh-hhccCcc--cccccceeeec
Confidence 447888999999999999999999999999998542110 000 0111111 56689999999
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCCceeee------------ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 899 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~- 899 (1120)
+.|..|++.+ ....+|+|....+.+.. -++|...++|.+|+|.....+++++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999988887 78899999876554433 256888999999999888899999999999999998643
Q ss_pred eeEee-----cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 900 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 900 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
.+..+ .+-.-+++.++|++||+++|.|+.||.|.+|+........ .+.....|.+ ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22332 2344578999999999999999999999999985533322 2333333432 23799999999999999
Q ss_pred E-EeCCeEEEEEcCCce-eeeccccCCCCCCeeEEEECCCCcEEEEEEc------CCcEEEEEcCCcceeeeeCCCcccC
Q 001224 975 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1046 (1120)
Q Consensus 975 ~-~~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------Dg~v~iwd~~~~~~~~~~~~~~~~~ 1046 (1120)
+ +.|+.+++||++..+ ++..+..-....+-+.++||||.++|++|.. -|.+++||..+.+.+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 899999999998754 4444432223556788999999999999874 478999999999999988722
Q ss_pred CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE-ecCCCC
Q 001224 1047 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF-EPLESE 1087 (1120)
Q Consensus 1047 ~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW-~~~~~~ 1087 (1120)
+ ..++.+.|+| .=+.|..|+.||+++|+ |.....
T Consensus 457 -~-----aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -T-----ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -C-----ceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 1 3345899999 46788899999999975 444443
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=219.67 Aligned_cols=253 Identities=13% Similarity=0.256 Sum_probs=212.3
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
.....+.-.+.+..++||+.....+++++.||+++|||...... +...++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34455667899999999999888899999999999999543221 112578899999999999
Q ss_pred C-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224 436 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 514 (1120)
Q Consensus 436 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 514 (1120)
+ +++.++++|.|++|++|+...+..++ ++.||...|...+|+|.... +++++|.|+++++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 67778889999999999999887666 79999999999999998777 8999999999999999865444558999
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
...|.++.|+.. +...+++|+.|+.|+.||++..+ ++..+.+|+-.|..+.|||... .
T Consensus 190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~ 248 (311)
T KOG0277|consen 190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------S 248 (311)
T ss_pred cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------h
Confidence 999999998754 44799999999999999999754 5667888999999999998876 5
Q ss_pred EEEEEeCCCeEEEEECCCC-ceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEc
Q 001224 594 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 594 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 653 (1120)
.|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+.+-|+.+.||+.
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 6899999999999999854 345555544 44678899988 7889999999999999974
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=224.75 Aligned_cols=245 Identities=13% Similarity=0.219 Sum_probs=200.3
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
|...|..+.|+|....|++++.|++++++|+...... .....+ ....+|.++.|+|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK--------------------rA~K~~---qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK--------------------RAFKVF---QDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHH--------------------HHHHHh---hccceeeeEeecCC
Confidence 8899999999999999999999999999998432110 000001 14678999999999
Q ss_pred CCEEEEEeC-CcEEEEEcCCCceeeee---cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec-ccc-c
Q 001224 836 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K 909 (1120)
Q Consensus 836 ~~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~-~ 909 (1120)
|.++++|.| .++++||+.+.++...- ..|.+.|+++.+++ .+++.++|+.||.|++||--+++|+.++. +|. +
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999995 78999999998886553 45788999999999 99999999999999999999999998884 465 4
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCC--CCCCcEEEEccCCcEEEEE--eCCeEEEEE
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVV--HETQLAIFE 985 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~fspdg~~la~~--~d~~v~i~d 985 (1120)
+|.+..|..+|+++.+.|.|..+++|.+.++.. ++...|.... ..--+...|.....|++.- ..+.++-||
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 699999999999999999999999999999654 3333332110 0122456777777777773 557899999
Q ss_pred cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224 986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
.+++..+..+.. +|++++..+.-||.+.-+++++.|..+++|--
T Consensus 382 aRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 382 ARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 999988877765 89999999999999999999999999999963
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-25 Score=217.39 Aligned_cols=247 Identities=17% Similarity=0.212 Sum_probs=196.7
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC-ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
..+.|.+++|||....++++|+-||+|++|+++.. .... +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 67899999999977778889999999999999873 3221 2466799999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 521 (1120)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-+|+|||.|++|+.||++...++.++. -...+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999999644 37789999999999887766589999999999999999999998887 45677776
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 601 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 601 (1120)
..- ..+++.+..++.|.+|+++......... .. | -+-.++++++.++....+.|+-+
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~--~S--------p---------Lk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRI--ES--------P---------LKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhh--cC--------c---------ccceeeEEEEEecCCceEeeeec
Confidence 542 2478888899999999997654332111 10 1 11145666666666678999999
Q ss_pred CeEEEEECCCC--ceeEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 602 FSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 602 g~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
|.+-|..+..+ +.-.+++.|.. .-.|++++|+|.-..|++++.||++.+||-..
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 99999999876 44445555542 23578899999999999999999999999643
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=253.23 Aligned_cols=287 Identities=18% Similarity=0.276 Sum_probs=238.3
Q ss_pred CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224 424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 503 (1120)
Q Consensus 424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~ 503 (1120)
.|...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.+++|||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 466789999998 77899999999999999999886652 3889999999999987455 79999999999999999
Q ss_pred CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
+|.|..++.+|.+.|.++...+ .++++|+.|.+|++|++.++..+..+.+|...|.++...
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 9999999999999999887532 578889999999999999888888888788877777665
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
+.++++|+.|++|++||+.+++++..+.+|.+ .|.++.+.+. ..+++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 24799999999999999999999999998654 8999988766 899999999999999998774344333
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224 664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 743 (1120)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 743 (1120)
.+|.
T Consensus 410 ~~h~---------------------------------------------------------------------------- 413 (537)
T KOG0274|consen 410 QGHT---------------------------------------------------------------------------- 413 (537)
T ss_pred cCCc----------------------------------------------------------------------------
Confidence 3222
Q ss_pred ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC
Q 001224 744 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 823 (1120)
Q Consensus 744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 823 (1120)
T Consensus 414 -------------------------------------------------------------------------------- 413 (537)
T KOG0274|consen 414 -------------------------------------------------------------------------------- 413 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
.-+..+. ..++++++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||.+++||+.++++.
T Consensus 414 -~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 414 -SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred -ccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 1111111 2456788887 99999999999999999998 67888888886 347888899999999999999988
Q ss_pred Eeecccc
Q 001224 902 SKLKGHS 908 (1120)
Q Consensus 902 ~~l~~h~ 908 (1120)
..+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774444
No 91
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.5e-25 Score=249.49 Aligned_cols=298 Identities=14% Similarity=0.160 Sum_probs=216.1
Q ss_pred cccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-C
Q 001224 757 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 835 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d 835 (1120)
-..|.....++++..++++..+.....|+...+. ..++....|+.......-.+|.+.|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3455566677787778888888888888753211 12334444543322111234999999999999 8
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-------ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224 836 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 907 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 907 (1120)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++.+|++|+.|+.|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999999 999999999764 3466788999999999999944579999999999999999999999999999
Q ss_pred ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E----eCCeEE
Q 001224 908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 982 (1120)
Q Consensus 908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~----~d~~v~ 982 (1120)
...|.+++|+|+|.+|++++.|++|+|||+.+++. +....+|.. ..+..+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998653 333344432 23356788998887776 3 368999
Q ss_pred EEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEe
Q 001224 983 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus 983 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
+||+++...........+...+....|++|+.+|++|+ .|+.|++||+.+++++....... ..... .++|
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-------~~~~~--g~~~ 311 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-------VEPHK--GLCM 311 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-------CCCCc--ceEe
Confidence 99998764322221112345667778999999999887 59999999999998876554111 11133 5777
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1062 HPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1062 ~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
.|. .-+-...-.-.+++.+..
T Consensus 312 ~pk---~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 312 MPK---WSLDTRKCEIARFYALTY 332 (493)
T ss_pred ccc---ccccccceeeeEEEEecC
Confidence 772 222222233445666543
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.4e-25 Score=215.74 Aligned_cols=246 Identities=15% Similarity=0.256 Sum_probs=207.6
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEeecce
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 899 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~ 899 (1120)
....|.++.|+++|.++++++ |.++++||..+++.++++..+.-.+..+.|.. ....+..++. |.+||..++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 467899999999999999988 78999999999999999998888899999988 5555555655 8899999999999
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 979 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~ 979 (1120)
.++.|.||...|++|+.+|-+..++|++.|++|++||++..+++....+. .-..++|.|+|-++|++.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----------CCcceeECCCCcEEEEecCC
Confidence 99999999999999999999999999999999999999975543321111 22568999999999997444
Q ss_pred -eEEEEEcCCc--eeeeccccC-CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCcc
Q 001224 980 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1055 (1120)
Q Consensus 980 -~v~i~d~~~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 1055 (1120)
.|++||++.- ....++... +-..+.+.|.|||||++++.+...+.+++.|.-+|..+..+. ++....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 9999999864 333444433 446789999999999999999999999999999999888877 33333344
Q ss_pred ceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1056 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1056 ~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
++..+|+| |++++++|+.||+|.+|++.+|.
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCc
Confidence 57899999 79999999999999999999998
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.2e-26 Score=258.96 Aligned_cols=280 Identities=20% Similarity=0.309 Sum_probs=223.8
Q ss_pred CCCCceEEEEecCCCeEEEEEe--CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
++..|.++..+|||.. +|||+ .||.++||+.+.--. ....++.. .+........|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 4567999999999995 99999 899999999754110 00111111 22223346789999999999999999
Q ss_pred EEEEECCCeEEEEEccC----------C-----ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224 441 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 505 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~ 505 (1120)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 0 11234567999999999999999999 8999999999999999999
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC------CCceeEEEEcCCCC-------
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGT------- 572 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~------- 572 (1120)
+.+.++.+|.+.|..+.|. +-|+|+++-+.|++|++|++.+-+....+..+ ...+..+.|+|||.
T Consensus 162 ~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999985 55689999999999999997775555444433 23567899999999
Q ss_pred -------------------eEEecccccceeEEEEcCC-------------CC----EEEEEeCCCeEEEEECCCCceeE
Q 001224 573 -------------------RTYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT 616 (1120)
Q Consensus 573 -------------------~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 616 (1120)
..+.||+. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 33456666 8889999872 11 56779999999999998887776
Q ss_pred EEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 617 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 617 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
....-. ...|.+++|+|||..|++++.||+|.++.....
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 554222 236999999999999999999999999988654
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.4e-26 Score=233.45 Aligned_cols=223 Identities=20% Similarity=0.286 Sum_probs=164.5
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCce-eeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~-~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v 499 (1120)
+.+|+..|.++++.|.|-+|++|+-|.+|++||...-.. .+.+..+. .....|.++.|++.|.. |++.+.....+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~--iLvvsg~aqakl 240 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ--ILVVSGSAQAKL 240 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe--EEEEecCcceeE
Confidence 778999999999999999999999999999999975422 11122222 23347999999999996 444444568899
Q ss_pred EECCCCceeEEe-------------eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEE
Q 001224 500 WDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 566 (1120)
Q Consensus 500 wd~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 566 (1120)
+| +.|..+..+ +||...+++.||+|... ..+++++.||++|+||+...+.....-.+.
T Consensus 241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k------- 311 (641)
T KOG0772|consen 241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTK------- 311 (641)
T ss_pred Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeec-------
Confidence 99 666554333 58999999999998765 678999999999999998755332211110
Q ss_pred EcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224 567 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 567 ~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
..+...-+++.++|+++++.+++|+.||.|.+|+...... ...-+.|.....|+|++||+||++|++-+
T Consensus 312 --------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 312 --------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred --------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 0111122566677778888999999999999999754321 22223454445899999999999999999
Q ss_pred CCCcEEEEEccCcchhhhhc
Q 001224 644 NDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 644 ~dg~i~iwd~~~~~~~~~~~ 663 (1120)
.|+++++||+++..+++...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred CCCceeeeeccccccchhhh
Confidence 99999999998775544433
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.5e-27 Score=236.07 Aligned_cols=286 Identities=19% Similarity=0.317 Sum_probs=233.7
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.+.|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 477899999999999999999999999999999999877 334457888889999999999999 69999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
++..++...++.||++.|+++.|.... ..+++|+.|.+|+.||+....+..+... ...+..++.+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence 999999999999999999999885544 3499999999999999987555443221 1222222222
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
...+++|-.|++|++||.++..+......++ .|+++..+++|..|.+.+.|.++.+.|+++. ...
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 1247778899999999999999999988765 4999999999999999999999999998765 111
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
.
T Consensus 377 ~------------------------------------------------------------------------------- 377 (459)
T KOG0288|consen 377 Q------------------------------------------------------------------------------- 377 (459)
T ss_pred E-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
.|+..|..
T Consensus 378 -----------------------~~sA~g~k------------------------------------------------- 385 (459)
T KOG0288|consen 378 -----------------------TFSAEGFK------------------------------------------------- 385 (459)
T ss_pred -----------------------Eeeccccc-------------------------------------------------
Confidence 11111100
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 893 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~vw 893 (1120)
.....+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 122367899999999999999 99999999999999888765444 599999999 89999999999999999
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-24 Score=212.43 Aligned_cols=289 Identities=14% Similarity=0.187 Sum_probs=227.1
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....|.++.|+++|..+++++.|..+++||... |..... +.. +...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~t-i~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKT-INS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeE-eec--ccccccEEEEecC
Confidence 457899999999999999999999999998743 222211 111 4556788888877
Q ss_pred CCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224 836 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 912 (1120)
Q Consensus 836 ~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 912 (1120)
...++.++ |.+||..++.+.+.++.|.+|...|++++.+| .+..+++++.|++|++||++..++...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77766665 78899999999999999999999999999999 6789999999999999999988777666544443
Q ss_pred EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224 913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 991 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~ 991 (1120)
.++|.|.|-++|.+.....|++||++.-.+..........+ .....+.+.|||||++++.+ ..+.+++.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~---~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN---DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC---CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 47999999999999888899999999865433333333322 22477999999999999885 778899999999998
Q ss_pred eeccccCCCCC-CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE
Q 001224 992 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1070 (1120)
Q Consensus 992 ~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~ 1070 (1120)
...+....... --.+.+|+||++++++|+.||+|.+|++++|..+..+... . ...+. .+.|.| .+..
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----~---~~~~~--~~~fnP---~~~m 289 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----N---GGPVS--CVRFNP---RYAM 289 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC----C---CCCcc--ccccCC---ceee
Confidence 88877433222 2267899999999999999999999999999999988822 1 22233 567887 4555
Q ss_pred EEeCCCcEEEEecCCCC
Q 001224 1071 LGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1071 s~~~Dg~v~vW~~~~~~ 1087 (1120)
.++.+..+.+|-+...+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 55667889999988765
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=215.02 Aligned_cols=307 Identities=16% Similarity=0.237 Sum_probs=224.5
Q ss_pred EEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccc
Q 001224 617 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 696 (1120)
Q Consensus 617 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1120)
.+++| ...|++++|+.||++|++.+.|++|++|++++-.. +.|...
T Consensus 81 ~LKgH--~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~--------------------------- 126 (420)
T KOG2096|consen 81 VLKGH--KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCI--------------------------- 126 (420)
T ss_pred hhhcc--CCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHh---------------------------
Confidence 34444 45899999999999999999999999999876311 111100
Q ss_pred cccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEec
Q 001224 697 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 776 (1120)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 776 (1120)
.... ..+..+.+.|+||-+.++...
T Consensus 127 ---------------------------------------------------R~nv----e~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 127 ---------------------------------------------------RQNV----EYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred ---------------------------------------------------hccc----cCCCceEEEECCCcceEEEEE
Confidence 0000 113456789999987666554
Q ss_pred c-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC
Q 001224 777 S-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 854 (1120)
Q Consensus 777 ~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~ 854 (1120)
. ...+++|.+...+- |...- ...-||... + ...|.-.+..+-...++++|++++ |..|.+|+++
T Consensus 152 ~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~-------f-~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk- 217 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE-------F-ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK- 217 (420)
T ss_pred ccCCEEEEEEeeeccc---CCCCc--ccccccccc-------c-chhcccceEEEeecCCceEEEEecCCCcEEEEecC-
Confidence 4 56889988743211 11100 001111000 0 012666777788888999999999 8899999998
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---c-----eeeEeecccccceEEEEEccCCCEEEEE
Q 001224 855 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSS 926 (1120)
Q Consensus 855 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 926 (1120)
|+.+..+......-...+.|| +|++||+++-.-.|+||.+-- | ..+..|.||.+.|..++||++...++|+
T Consensus 218 Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 888888887777778899999 999999999888999999752 2 2345689999999999999999999999
Q ss_pred eCCCCEEEEECCCccccc--ceeeeccCC-CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCC
Q 001224 927 GADSQLCVWSSDGWEKQK--NRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP 1003 (1120)
Q Consensus 927 s~Dg~v~iWd~~~~~~~~--~~~~~~~~~-~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~ 1003 (1120)
+.||+++|||++-.-... ...++.... .....+....+.++|.|+.||++....+++|..++++....+. +.|...
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~ 375 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTT 375 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCc
Confidence 999999999987532222 112222210 0011134468999999999999999999999999998887776 478999
Q ss_pred eeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 1004 ITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
|++|+|++||+++++++ |..++++.
T Consensus 376 Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 376 ISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eeeEEecCCCcEEeeec-ceeeeeec
Confidence 99999999999999987 78888876
No 98
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=9.2e-25 Score=247.69 Aligned_cols=263 Identities=13% Similarity=0.124 Sum_probs=197.8
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 441 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 441 (1120)
+-..|+....++|+.. +++++.+.....|+...+..+. +.-..+..+....++.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4567778888899774 6777777888889876654321 11111111112235789999999999999 89999
Q ss_pred EEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224 442 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
|+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998744 7999999999999999999999999999999
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
|.+++|++ ++.+|++++.|+.|++||+++......+..|.... ...+.|.+++..+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence 99999965 56799999999999999999877665555554321 122334444456666
Q ss_pred Ee----CCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCc
Q 001224 598 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 656 (1120)
Q Consensus 598 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 656 (1120)
++ .|+.|++||+++.. .+.....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 44 47999999998754 33333322 223455667899999999887 5999999999877
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=211.88 Aligned_cols=317 Identities=15% Similarity=0.196 Sum_probs=212.0
Q ss_pred ccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeee--cccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 420 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 420 ~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l--~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
..|++|.+.|++++||.||++||+++.|++|+||+++.-... ....+ .-.-+--+.++|+||-+- +++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh-hhhHhhccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 369999999999999999999999999999999999863211 11111 111235678999999886 55566666678
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
++|-+...+. ..+..|.-.+..+.|.. .|.-.+..+
T Consensus 158 ~vyk~~K~~d-G~~~~~~v~~D~~~f~~-------------------------------kh~v~~i~i------------ 193 (420)
T KOG2096|consen 158 CVYKLVKKTD-GSGSHHFVHIDNLEFER-------------------------------KHQVDIINI------------ 193 (420)
T ss_pred EEEEeeeccc-CCCCcccccccccccch-------------------------------hcccceEEE------------
Confidence 8886542221 00110111111111100 011111111
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
-...++.++++++.|..|.+|+++ |+.+..+..... .-+..+.||+|+++++++..--|++|.+--++
T Consensus 194 ---------GiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 194 ---------GIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred ---------eecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 112223478899999999999997 888888764432 45678999999999999999999999763210
Q ss_pred hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224 658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 737 (1120)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 737 (1120)
.+... ...+++.+
T Consensus 262 ------dG~fq-------------------------------------------------------------ev~rvf~L 274 (420)
T KOG2096|consen 262 ------DGTFQ-------------------------------------------------------------EVKRVFSL 274 (420)
T ss_pred ------Ccchh-------------------------------------------------------------hhhhhhee
Confidence 00000 11122332
Q ss_pred ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc-ccCCCCccccccCceeecCCCCCcccc
Q 001224 738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT-ERNSSGKATASVAPQLWQPPSGIMMTN 816 (1120)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~w~~~~g~~~~~ 816 (1120)
.+|...|..++|+++.+.+++.+.||.+++||++-. ....+.+.+.. |. .
T Consensus 275 ----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~---~ 325 (420)
T KOG2096|consen 275 ----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS---A 325 (420)
T ss_pred ----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC---c
Confidence 349999999999999999999999999999998532 11112222211 11 0
Q ss_pred cCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeee-cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 817 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 817 ~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
.+.. .......++++|.|+.||......++++..++++..-++ ..|...|.+++|++ +|+++|+++ |..++++.
T Consensus 326 pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 326 PLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred chhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 1111 233344899999999999998899999999988776665 45888999999999 999999886 77888876
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.9e-26 Score=241.27 Aligned_cols=247 Identities=20% Similarity=0.274 Sum_probs=203.3
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
++..++.+..+|.+|+.||.|++|++....... +.++ ...+..|.+.|+.++...+|+.|+++|.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPY-IASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCc------------ccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 445554443359999999999999986543321 1111 124778999999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecccccCeEEEEE-cCCCCceEEEEecCCCcEEEEECCCCc--eeEE--------ee-cccc
Q 001224 449 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQYI--------FE-GHEA 516 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~--------~~-~h~~ 516 (1120)
+|++|+...+. .....+++.|.+.|.|++. .++.. ++|+||-|+.|.+||+.+|. .+.+ +. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998774 2234478899999999999 66666 79999999999999999872 3322 23 7888
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|++++. .++|..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+ .++
T Consensus 173 siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt---------------------~~l 229 (735)
T KOG0308|consen 173 SIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT---------------------RLL 229 (735)
T ss_pred ceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------------eEe
Confidence 9999986 45567999999999999999999999988888888777777666665 799
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++.||+|++||+...+++.++..|.. .|.++..+|+-..+++|+.||.|..-|+++.
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999987765 6999999999999999999999999988875
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.5e-25 Score=215.09 Aligned_cols=245 Identities=16% Similarity=0.322 Sum_probs=204.1
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
|++.|+.++-..... ++.+++.|.+-+||.+++|.++.. +.||.+.|+++.|++.+.+++
T Consensus 147 HkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred cccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccceEE
Confidence 445555544444444 799999999999999999999984 889999999999999999999
Q ss_pred EEECCCeEEEEEcc------C--------C-----------------------ceeeeeeeecccccCeEEEEEcCCCCc
Q 001224 443 VAYSRHIVQIYSYH------G--------G-----------------------DEVRQHLEIDAHVGGVNDIAFSHPNKQ 485 (1120)
Q Consensus 443 s~~~dg~v~iwd~~------~--------~-----------------------~~~~~~~~l~~h~~~V~~v~~s~d~~~ 485 (1120)
+++.|++..||... . + ..-.+...|.+|.+.|.+..|...|++
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence 99999999999721 1 0 001134568899999999999999994
Q ss_pred eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeE
Q 001224 486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTT 564 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 564 (1120)
+++++.|.+..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||.+.. .....|.+|...|++
T Consensus 287 --~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 287 --MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred --eeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9999999999999999999999999999999998876654 78999999999999999853 234567888888888
Q ss_pred EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224 565 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 565 ~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
..|..+.+ +++|+.|.+|++||+++.+ ++.++.... .++.++.+..+..++.--
T Consensus 363 ~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 363 VVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEecc
Confidence 88887765 9999999999999998754 566665443 588899999999999999
Q ss_pred CCCcEEEEEccCc
Q 001224 644 NDNGIKILATSDG 656 (1120)
Q Consensus 644 ~dg~i~iwd~~~~ 656 (1120)
++..|++||++..
T Consensus 418 DNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 418 DNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEEEecCCC
Confidence 9999999998654
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-25 Score=238.43 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=228.3
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
-+.|+..+ +||+|. ...|++|+..+++.... ..-+...|+++.|+++|++||+|..+|
T Consensus 182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred HhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence 46788555 466665 35899999999985542 222378999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE-eeccccCeEEEeeccC
Q 001224 449 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHK 526 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~ 526 (1120)
.|.|||..+.+.++ .+.+ |...|.+++|+ +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-- 310 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-- 310 (484)
T ss_pred eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--
Confidence 99999999987666 6777 99999999998 34 699999999999999998877655 88999999999985
Q ss_pred CCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe--CCCeE
Q 001224 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSI 604 (1120)
Q Consensus 527 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i 604 (1120)
.++.++++|+.|+.+.+||.....+...+..|...|..++|+|-.. ..||+|+ .|+.|
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRCI 370 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccEE
Confidence 4558999999999999999998899999999999999999999765 5688854 79999
Q ss_pred EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE--ECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcc
Q 001224 605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 682 (1120)
Q Consensus 605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1120)
++||..++..+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. ..+..+
T Consensus 371 ~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------- 427 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------- 427 (484)
T ss_pred EEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-------------------
Confidence 999999999998887544 59999999988777664 45678888887653 111111
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224 683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 762 (1120)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 762 (1120)
.+|..+|..
T Consensus 428 -----------------------------------------------------------------------~gH~~RVl~ 436 (484)
T KOG0305|consen 428 -----------------------------------------------------------------------LGHTSRVLY 436 (484)
T ss_pred -----------------------------------------------------------------------cCCcceeEE
Confidence 348899999
Q ss_pred EEEcCCCceEEEeccCceEEEeee
Q 001224 763 LIFTNSGNAILALASNAIHLLWKW 786 (1120)
Q Consensus 763 l~~s~~g~~l~~~~~dg~i~vw~~ 786 (1120)
++++|||..+++++.|.++++|++
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccc
Confidence 999999999999999999999986
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-24 Score=211.88 Aligned_cols=240 Identities=21% Similarity=0.233 Sum_probs=202.6
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEeec
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~ 897 (1120)
..|...++++|+ ++.++|+|+ |.+|+|||+.....+..+..|.+.|+++.|.+ ... .|++|++||.|.+|+..+
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 349999999998 688999999 99999999999999999999999999999998 554 889999999999999999
Q ss_pred ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 977 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~ 977 (1120)
++++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+......+. + ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----~-----~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----N-----KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----C-----cceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999997753322222 1 235699999999999998
Q ss_pred CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224 978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
...|-+|.+.+......+.. ...+.++.|- ++.+|++|+.|+.|.+||.+++...+.+. +|... |-
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK-- 253 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK-- 253 (362)
T ss_pred ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--
Confidence 99999999998888777653 3567777775 56788889999999999999987777666 33333 44
Q ss_pred EEE-ecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1058 VIA-AHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1058 ~i~-~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
++. |.-.++.+|+|+|+||.|+|||+...
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 344 33226789999999999999999876
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.2e-25 Score=228.04 Aligned_cols=269 Identities=14% Similarity=0.231 Sum_probs=220.8
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
++...+.|.+.|+.+.+-|....++|+++..+.|.|||..+...... ..+...+...|.||...=+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---------~~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK---------ASGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc---------ccccCCCceEEEeecccccccccc
Confidence 45667889999999999999999999999999999999976443321 001122333588999988999999
Q ss_pred C-CCCeEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC--CCcee
Q 001224 436 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ 508 (1120)
Q Consensus 436 p-dg~~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~--~~~~~ 508 (1120)
+ ..-+|++|+.|++|++||+..... +.....+.+|.+.|..++|.+-... +++++++|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9 566899999999999999985433 5566678999999999999998887 79999999999999999 56667
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
....+|.++|.|++|+|.. +..|++|+.|++|.+||+++.. +..++..|...|..+.|+|...
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e--------------- 329 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE--------------- 329 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence 7888999999999998765 4799999999999999999864 5668889999999999999876
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcee------------EEEecCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEcc
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLL------------TSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS 654 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~ 654 (1120)
..|++++.|+.+.+||+..-... ..|...+|...|..+.|+|+.. .+++.+.|+.+.||.+.
T Consensus 330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 57899999999999998642222 2244456677899999999765 46677889999999876
Q ss_pred C
Q 001224 655 D 655 (1120)
Q Consensus 655 ~ 655 (1120)
.
T Consensus 405 ~ 405 (422)
T KOG0264|consen 405 E 405 (422)
T ss_pred c
Confidence 4
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-25 Score=238.27 Aligned_cols=259 Identities=16% Similarity=0.264 Sum_probs=214.5
Q ss_pred CCCCCCCCcceeeecc-CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC-
Q 001224 347 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD- 424 (1120)
Q Consensus 347 ~~~~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 424 (1120)
+|-.+.....+..+.. +...|+++.|+++|.+ ||+|..+|.|.|||..+.+.+.. +.+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 3444444455555554 3899999999999995 99999999999999998877653 455
Q ss_pred CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999998 77899999999999999998775543 4889999999999999999 799999999999999988
Q ss_pred CceeEEeeccccCeEEEeeccCCCceEEEEEe--cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224 505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582 (1120)
Q Consensus 505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 582 (1120)
..++..+..|.+.|.+++|+|-.. ..|++|+ .|++|++||..++..+.... .+..|.++.|++..
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~----------- 399 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKY----------- 399 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCC-----------
Confidence 999999999999999999998766 4888876 49999999998765544332 23445555555554
Q ss_pred eeEEEEcCCCCEEEE--EeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 583 LGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 583 i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.|++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 400 ----------kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 400 ----------KELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ----------CEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 45555 45788999999999999999887755 7999999999999999999999999987654
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=240.04 Aligned_cols=366 Identities=16% Similarity=0.192 Sum_probs=267.4
Q ss_pred EEEEcC-CCCeEEEEECCCeEEEEEccCCcee---eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-
Q 001224 431 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG- 505 (1120)
Q Consensus 431 ~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~- 505 (1120)
++..++ .++||.+||.||.|++|++...... .....++.|.+.|+.++...+++ .|+++|.|.+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 444544 7788999999999999998754321 12346889999999999999998 5999999999999999887
Q ss_pred -ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 506 -AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 506 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
-|+.++..|.+.|.|++.- ..+...+++||.|+.|.+||+.++.....
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~------------------------------ 155 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV------------------------------ 155 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh------------------------------
Confidence 6888999999999999973 44557999999999999999986432100
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 664 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 664 (1120)
++. ..+..-++.. +....|.+++..+.|..+++|+.++.+++||.++..+.++
T Consensus 156 -------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk--- 208 (735)
T KOG0308|consen 156 -------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK--- 208 (735)
T ss_pred -------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccccccceee---
Confidence 000 0000001100 2344688899999999999999999999999876622111
Q ss_pred cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCc
Q 001224 665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 744 (1120)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 744 (1120)
T Consensus 209 -------------------------------------------------------------------------------- 208 (735)
T KOG0308|consen 209 -------------------------------------------------------------------------------- 208 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCC
Q 001224 745 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 824 (1120)
Q Consensus 745 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~ 824 (1120)
+. +|.
T Consensus 209 -------------------------------------------------------------------------Lr--GHT 213 (735)
T KOG0308|consen 209 -------------------------------------------------------------------------LR--GHT 213 (735)
T ss_pred -------------------------------------------------------------------------ee--ccc
Confidence 11 277
Q ss_pred CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
..|.++..++||..+++++ ||+|++||+...+++.++..|...|.++..+| +-..+.+|+.||.|+.-|+.+......
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tl 292 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTL 292 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheE
Confidence 7788888888888888887 89999999999999999999999999999999 899999999999999999988433333
Q ss_pred ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 983 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i 983 (1120)
+-....+|..+..+.+.+-+-+++.|+.|+-|..+. ...+++.|.+...+.+....+
T Consensus 293 ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 293 ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred eecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCcccccCCCcc
Confidence 333456677777775444456677899999997654 123444555444444444444
Q ss_pred EEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee
Q 001224 984 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus 984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
++... .... ..+| ..+|...++-.|.+++++-...|.+.+||+-..+.+..+
T Consensus 350 ~~~~~-tp~~--vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 350 CDLTN-TPDS--VIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred ccccC-CCce--eccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 44322 1111 1112 456777778889999999999999999999777665443
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=223.47 Aligned_cols=285 Identities=16% Similarity=0.220 Sum_probs=217.8
Q ss_pred ccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 422 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++. ++..|.+.|..+++.. + .++++|+|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999977 889999999999999999977666 7899999999999987 3 48999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
-+.. ..++++.+. ..+..+.-+. .+..++|+|. .|.+||.....++..+.-....+.++.|+|...
T Consensus 135 k~~~-~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9665 466776542 3444554322 2357788774 588899987777776666666666666666554
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
..|+++++|+.|.+||++++.++..+..... -+.++|+|.+-.+++|+.|..++.+|++.....+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence 4567778999999999999998887764433 5679999988889999999999999986542211
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
...
T Consensus 266 ~v~----------------------------------------------------------------------------- 268 (433)
T KOG0268|consen 266 NVH----------------------------------------------------------------------------- 268 (433)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
T Consensus 269 -------------------------------------------------------------------------------- 268 (433)
T KOG0268|consen 269 -------------------------------------------------------------------------------- 268 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
.+|.+.|.++.|||.|+-+++|+ |.+|+||....+.....+. .-...|.|+.||. |.+++++|++|+.|++|.....
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence 01666677777777777788887 8888888877654332221 1234699999999 9999999999999999987654
Q ss_pred ee
Q 001224 899 EV 900 (1120)
Q Consensus 899 ~~ 900 (1120)
+.
T Consensus 348 ek 349 (433)
T KOG0268|consen 348 EK 349 (433)
T ss_pred hh
Confidence 43
No 108
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=6.7e-24 Score=240.95 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=181.4
Q ss_pred EeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCCce-
Q 001224 383 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 460 (1120)
Q Consensus 383 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~- 460 (1120)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5567788888876544333 47899999999999996 89999999999999999986432
Q ss_pred e----eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe
Q 001224 461 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 536 (1120)
Q Consensus 461 ~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 536 (1120)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999885 56899999999999999999888776 667899999865 567999999
Q ss_pred cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC----eEEEEECCC-
Q 001224 537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 611 (1120)
Q Consensus 537 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 611 (1120)
.|+.|++||++++.....+..|.+.+.... ++...+++++.++++++.|+ .|++||+++
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999998877777766655433222 22234556777899887664 799999985
Q ss_pred CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 612 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 612 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++++..+..+.....+......++|.++++|..|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 566766655544333333444557999999999999999999765
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=233.84 Aligned_cols=241 Identities=17% Similarity=0.301 Sum_probs=205.0
Q ss_pred eeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE-EEE
Q 001224 357 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIW 434 (1120)
Q Consensus 357 ~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~ 434 (1120)
+.+.+ +|++.|..+++.+.. .+++|+.||++++|+-..++-+.. +.+.+|.+-|.+ +++
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 33444 599999999988877 489999999999999876654432 136678888888 888
Q ss_pred cC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224 435 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 513 (1120)
Q Consensus 435 sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 513 (1120)
-+ ++-+|++|+.|++|.+|...+...+. .|.||...|.++....++. +++||.|.+++||- .+++...+.+
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g 138 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG 138 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence 86 66679999999999999999987554 8999999999999888876 89999999999995 5677788999
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
|+..|+++...+.. .++||+.|++|++|.- ++...++.+|...|..+++-+++.
T Consensus 139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~--------------------- 192 (745)
T KOG0301|consen 139 HTASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH--------------------- 192 (745)
T ss_pred cchheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---------------------
Confidence 99999999875543 8999999999999965 677888999999999999988875
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
+++++.||.|+.|++ +|+++..+.+| ...+.+++...++..+++++.|+++++|+..
T Consensus 193 -flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 193 -FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999999 78888877655 5579999988899999999999999999864
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.5e-24 Score=217.60 Aligned_cols=240 Identities=19% Similarity=0.315 Sum_probs=197.8
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
|...|..+.|+++...+++++.|..|+||...... .... . ..|..+|+.+..+|.
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------------~~~~----~--~~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------------EPTS----S--RPHEEPVTGLSLHPT 314 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeecccccc-------------------Cccc----c--ccccccceeeeeccC
Confidence 67788999999999999999999999999863211 0000 1 129999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 912 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 912 (1120)
|.||++++ |++..+.|+.++..+..... ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 99999999 89999999999988766553 234589999999 999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC--c
Q 001224 913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--L 989 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~--~ 989 (1120)
+++|+.+|-|||+++.|+.|++||++.-+.... +..... ..+.++.|.+.|.+|+++ .+=.|++++-.+ .
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt--~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKT--IQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccce--eecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 999999999999999999999999998553322 222221 258999999999999995 555666666443 3
Q ss_pred eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224 990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
.++..+. .|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 467 ~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 4444443 67889999999999999999999999888764
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.3e-24 Score=208.07 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=161.8
Q ss_pred ccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 422 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 422 l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
-....+.|.+|+||| ...+++.+|.|++||+|+++....+.. +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 666677899999999999987432322 35667999999999999998 69999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
|+.++ .+..+..|.++|..+.|....+-..|++|+-|++|++||.+...++.++..++. +.+
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa---------------- 161 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYA---------------- 161 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eee----------------
Confidence 99999 456677799999999998777667899999999999999998777776655432 111
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.+-....++++..++.|.+|+++++..........-.-.++|++..+|....+.|+-+|.+.+..+..+
T Consensus 162 -------~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 162 -------ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred -------hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 111123578888999999999987654332221112235789999998888899999999998887664
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=221.34 Aligned_cols=293 Identities=16% Similarity=0.197 Sum_probs=223.6
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeee--------------eee-cccccCeEEEEEcCCCCc
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 485 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~d~~~ 485 (1120)
....|.-+|.+++++||++++.+++.+++|.=|++.+++..+.+ ..- .+|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 46789999999999999999999999999999999988743111 011 37889999999999999
Q ss_pred eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224 486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 565 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 565 (1120)
||++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++....+.++-+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999996544 579999999999999999888888888888888877
Q ss_pred EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224 566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645 (1120)
Q Consensus 566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 645 (1120)
....-++ .+-+|+.|+++++|++.... ...+.++. ..+-|++|-.+ ..+++|+.+
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~ees-qlifrg~~--~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEES-QLIFRGGE--GSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEeccccc-eeeeeCCC--CCeeeEEEecc-cceeeccCC
Confidence 6655554 34446699999999995433 33343333 35788888754 578899999
Q ss_pred CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceee
Q 001224 646 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 725 (1120)
Q Consensus 646 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 725 (1120)
|.|.+|++.....+...-..|.... +.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~------------------------------------------------~~----- 374 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIP------------------------------------------------EL----- 374 (479)
T ss_pred ceEEEeeecccCceeEeeccccccC------------------------------------------------Cc-----
Confidence 9999999877633222222111100 00
Q ss_pred ccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCcee
Q 001224 726 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 805 (1120)
Q Consensus 726 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 805 (1120)
+...+...|++++..|...++++++.+|.+++|.+..+
T Consensus 375 --------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g---------------- 412 (479)
T KOG0299|consen 375 --------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG---------------- 412 (479)
T ss_pred --------------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCC----------------
Confidence 00113357899999999999999999999999987432
Q ss_pred ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe
Q 001224 806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 843 (1120)
Q Consensus 806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s 843 (1120)
......+....-.+.|++++|+++|+++++|-
T Consensus 413 ------~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 413 ------LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ------ccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 11111122223567899999999999888875
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=216.23 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=230.8
Q ss_pred cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC
Q 001224 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 551 (1120)
Q Consensus 472 ~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 551 (1120)
..+.++...+... .+++|+.|..+.++|..+++.+.+++||...|+.+.+++.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence 4677888888745 59999999999999999999999999999999999997765 5799999999999999887776
Q ss_pred ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEE
Q 001224 552 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 631 (1120)
Q Consensus 552 ~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 631 (1120)
......|..+|+.+...|.| .||++++.||...+.|++++..+...........+++.+
T Consensus 296 ~~~~~~h~~~V~~ls~h~tg---------------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTG---------------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ccccccccccceeeeeccCC---------------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 66666666666655555554 599999999999999999999988877554445689999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCC
Q 001224 632 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 711 (1120)
Q Consensus 632 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1120)
|+|||..+.+|..||.+++||+.++. ....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~------------------------------------------------- 384 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK------------------------------------------------- 384 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence 99999999999999999999987651 0000
Q ss_pred CcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccccc
Q 001224 712 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 791 (1120)
Q Consensus 712 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 791 (1120)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeE
Q 001224 792 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAAT 869 (1120)
Q Consensus 792 ~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~ 869 (1120)
++ +|.++|.+++|+.+|-|+|++. |+.|++||++..+...++.... .++.
T Consensus 385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 11 2778888888888888888888 6779999988777666665332 3699
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEee--cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 870 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 870 ~l~~sp~d~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
++.|.+ .|.+|+.++.|=+|++++-. ++.++..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999 89999999877555555432 57788899999999999999999999999999999988754
No 114
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-22 Score=222.77 Aligned_cols=526 Identities=15% Similarity=0.196 Sum_probs=328.3
Q ss_pred cCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCc-eEEEEecCCCcEEEEE
Q 001224 423 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWD 501 (1120)
Q Consensus 423 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~-~~l~s~s~d~~i~vwd 501 (1120)
.|-...-..-.||+|+++++... +..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++||
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 33333444567899999998876 4569999999999887 79999999999999987764 4788999999999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCC-CceEEE-EEecCCeE-EEEecCCCCCceeeeCCCCceeEEEE-cCCCCeEEec
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFIF-STALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQG 577 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~-s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~g~~~~~~ 577 (1120)
...+..++++..+. ++.++.+.+.. +...++ .+..|..+ .....+..+....+. -..+ ++.+ .+...
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~-------~~t~~~~~~-d~~~~ 159 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFV-------LATFDSAKG-DFLKE 159 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeE-------eeeccccch-hhhhh
Confidence 99999999987543 33333221100 001111 11111111 000001001000000 0000 0000 00000
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE--ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
+. .-..+..++.+.+. ....+..+.+|+..++...... ....|...+++.++||+++++++|..||.|.+|.--.
T Consensus 160 ~~--~~~~I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 160 HQ--EPKSIVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred hc--CCccEEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 00 02334555555543 4444567889998775511111 1112333478999999999999999999999996321
Q ss_pred cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
. . ..+-+..+|
T Consensus 237 ~-------~--------------------------------------------------------------~~~~t~t~l 247 (792)
T KOG1963|consen 237 S-------S--------------------------------------------------------------DDSETCTLL 247 (792)
T ss_pred c-------c--------------------------------------------------------------cccccceEE
Confidence 0 0 000111111
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 815 (1120)
.. |...|.+++|+++|.+|++||..|.+.+|.+.+ +. .
T Consensus 248 HW------------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~--k 285 (792)
T KOG1963|consen 248 HW------------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GK--K 285 (792)
T ss_pred Ee------------------cccccceeEEecCCceEeecccceEEEEEeecC----------------------CC--c
Confidence 11 678999999999999999999999999998743 22 1
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC-----------CCCeEEEEEecCCCcEEEE
Q 001224 816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAI 883 (1120)
Q Consensus 816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~las 883 (1120)
..++. -...|..+.+|||+.+.+... |+.|.+..+.+.....++.+. .+-.+.++++| ..+.++.
T Consensus 286 qfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vl 362 (792)
T KOG1963|consen 286 QFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVL 362 (792)
T ss_pred ccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceee
Confidence 11222 578899999999999888776 999999988766555444332 23367788999 7778888
Q ss_pred EeCCCcEEEEEeecceeeEeec-----------ccccceEEEEEccCCCEEEEEeC--------CC--CEEEEECCCccc
Q 001224 884 GMDDSSIQIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEK 942 (1120)
Q Consensus 884 g~~dg~v~vwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s~--------Dg--~v~iWd~~~~~~ 942 (1120)
.+..|.|.+||+.+.+.+..+. -+.-.|++++.+-.|.+++|+-. || .+++|-.....+
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 8999999999998876665542 13345788888888999998643 33 478998776554
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEc-cCCc-EEEE-EeCCeEEEEEcCCceee--------eccccCCCCCCeeEEEECC
Q 001224 943 QKNRFLQIPTGRTPTAQSDTRVQFH-QDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~i~~~~fs-pdg~-~la~-~~d~~v~i~d~~~~~~~--------~~~~~~~h~~~v~~l~~s~ 1011 (1120)
...........|.. .+...+|. +... ..++ +.||.+++|-....+-+ ......-|..++++++||.
T Consensus 443 t~~L~T~I~~PH~~---~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 443 TFILNTKINNPHGN---AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred eeEEEEEEecCCCc---eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 33333333334432 33344443 3222 5555 59999999988432211 1111123688999999999
Q ss_pred CCcEEEEEEcCCcEEEEEcCC-cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 001224 1012 DSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus 1012 dg~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1090 (1120)
||..|+++ .|++|.|||..+ .++.+... ....+.++ .. ..+-.+. ...+.....+.+.+|++....-.|
T Consensus 520 dGslla~s-~~~~Itiwd~~~~~~l~~~~~-~~~~~~~~----~~--~~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 520 DGSLLAVS-FDDTITIWDYDTKNELLCTEG-SRNWPIAE----LL--FTAQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred CCcEEEEe-cCCEEEEecCCChhhhhcccc-ccccchHh----Hh--hhccccc--ccceeeccCceEehHhhhhhheec
Confidence 99877754 689999999999 55555443 22222221 10 1111221 234444567899999999988777
Q ss_pred C
Q 001224 1091 G 1091 (1120)
Q Consensus 1091 ~ 1091 (1120)
.
T Consensus 590 ~ 590 (792)
T KOG1963|consen 590 N 590 (792)
T ss_pred c
Confidence 3
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.1e-25 Score=219.24 Aligned_cols=285 Identities=18% Similarity=0.297 Sum_probs=217.7
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEe
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 545 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 545 (1120)
.|.||.+.|.|++=.|..-. .+++|+.||.|+|||+.+..++.++.+|.+.|..+++.. ..+++++.|++|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 47899999999999998633 699999999999999999999999999999999999865 4689999999999998
Q ss_pred cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC
Q 001224 546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 625 (1120)
Q Consensus 546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 625 (1120)
++.. ...++.+ +..+..+..+..++.++++|+ .|.|||.....++..+... ..
T Consensus 136 ~~~~-p~~tilg----------------------~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG--~D 188 (433)
T KOG0268|consen 136 IDGP-PLHTILG----------------------KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG--AD 188 (433)
T ss_pred ccCC-cceeeec----------------------cccccccccccccccccccCc--eeeecccccCCccceeecC--CC
Confidence 7652 1111111 112333444444566788775 5899999988888888743 45
Q ss_pred CcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001224 626 ASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 704 (1120)
Q Consensus 626 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1120)
.|.++.|+|- ...|+++..|+.|.+||++.+ .+++.+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KV----------------------------------------- 226 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKV----------------------------------------- 226 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccC-Ccccee-----------------------------------------
Confidence 7999999995 456777779999999998876 211111
Q ss_pred cccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEe
Q 001224 705 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 784 (1120)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw 784 (1120)
+
T Consensus 227 --------------------------------------------------------------------i----------- 227 (433)
T KOG0268|consen 227 --------------------------------------------------------------------I----------- 227 (433)
T ss_pred --------------------------------------------------------------------e-----------
Confidence 0
Q ss_pred eecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCC-ceeeeec
Q 001224 785 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFM 862 (1120)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~-~~~~~~~ 862 (1120)
.......|+|+|.+-.+++|+ |..++.||+... ..+....
T Consensus 228 --------------------------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 228 --------------------------------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred --------------------------------------eeccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 111223466777666666666 778888887753 3456778
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcc
Q 001224 863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 941 (1120)
Q Consensus 863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~ 941 (1120)
+|...|..++||| -|+-+++|+.|.+|+||.+..+....... .-...|.|+.||.|.++++|||.|+.|++|.....+
T Consensus 270 dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 270 DHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 8999999999999 89999999999999999988765433221 123469999999999999999999999999987655
Q ss_pred c
Q 001224 942 K 942 (1120)
Q Consensus 942 ~ 942 (1120)
+
T Consensus 349 k 349 (433)
T KOG0268|consen 349 K 349 (433)
T ss_pred h
Confidence 4
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-23 Score=203.63 Aligned_cols=272 Identities=16% Similarity=0.224 Sum_probs=218.4
Q ss_pred EEEEecCCCcEEEEECCCC------------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee
Q 001224 487 CVITCGDDKTIKVWDATNG------------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 554 (1120)
Q Consensus 487 ~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 554 (1120)
-++.|+....|.-+++.-. .++..+..|.+.|++++.+ +.++++|+.|-+|++||+........
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcc
Confidence 3677777777766665421 2355678899999999963 47999999999999999999988888
Q ss_pred eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 555 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 555 ~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
+..|.+.++++.|.++-.. ++|++|++||.|.+|+.....++..++.|.+ .|+.++++|
T Consensus 79 ll~HagsitaL~F~~~~S~-------------------shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHP 137 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSK-------------------SHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHP 137 (362)
T ss_pred eeccccceEEEEecCCcch-------------------hheeeecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecC
Confidence 8888888888888776531 3699999999999999999999999998876 599999999
Q ss_pred CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224 635 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 714 (1120)
Q Consensus 635 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1120)
.|++.++.+.|+.+++||+-+|....
T Consensus 138 S~KLALsVg~D~~lr~WNLV~Gr~a~------------------------------------------------------ 163 (362)
T KOG0294|consen 138 SGKLALSVGGDQVLRTWNLVRGRVAF------------------------------------------------------ 163 (362)
T ss_pred CCceEEEEcCCceeeeehhhcCccce------------------------------------------------------
Confidence 99999999999999999986661000
Q ss_pred cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224 715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 794 (1120)
Q Consensus 715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 794 (1120)
+-+
T Consensus 164 -------------------v~~---------------------------------------------------------- 166 (362)
T KOG0294|consen 164 -------------------VLN---------------------------------------------------------- 166 (362)
T ss_pred -------------------eec----------------------------------------------------------
Confidence 000
Q ss_pred CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEe
Q 001224 795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874 (1120)
Q Consensus 795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 874 (1120)
-....+.+.|+|.|.+++.+....|-+|.+.+......+.. ...+.|+.|.
T Consensus 167 ----------------------------L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l 217 (362)
T KOG0294|consen 167 ----------------------------LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFL 217 (362)
T ss_pred ----------------------------cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeec
Confidence 01112237788888888888878899999887766655542 2557788776
Q ss_pred cCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc--cCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224 875 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGWEKQKN 945 (1120)
Q Consensus 875 p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~ 945 (1120)
++..|++|.+|+.|.+||..+..+...+.+|..+|.++.+- |++.+|+|++.||.|+|||++...+...
T Consensus 218 --~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 218 --DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred --CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCc
Confidence 67789999999999999999999999999999999999853 6789999999999999999998655433
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.8e-24 Score=229.23 Aligned_cols=274 Identities=14% Similarity=0.236 Sum_probs=225.1
Q ss_pred ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc-ccCCCCCCCCCccE-EE
Q 001224 754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA 831 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~-l~ 831 (1120)
.+|...|..+++.+.. .+++++.||++++|+-..+ ..+. ..+. +|.+-|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~--~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFE--GPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceecc--cCcceeeccce
Confidence 5688999888877666 5899999999999974221 1111 1111 25555555 77
Q ss_pred Ecc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224 832 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 832 ~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
+.+ ++-.+++|+ |.+|.+|...+...+.++.+|...|.|++... ++. +++|+.|.++++|-. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 765 444577787 99999999999999999999999999999876 665 899999999999975 566777999999
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 989 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~ 989 (1120)
.|+++++-|++ .++||+.|.+|++|.-.+ +++.+.||.+ -|+.+++-+++.++-++.||.|+.|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999988 889999999999998655 6788889886 899999999999999999999999999 78
Q ss_pred eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224 990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus 990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
+++.... +|..-|+++....+++.++++++|++++||+.. ++.+.+. +| +..++ ++.+.++ .-+
T Consensus 210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lP----ttsiW--sa~~L~N--gDI 273 (745)
T KOG0301|consen 210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LP----TTSIW--SAKVLLN--GDI 273 (745)
T ss_pred ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cC----ccceE--EEEEeeC--CCE
Confidence 8877765 899999999999999999999999999999987 6666666 44 22366 6777762 467
Q ss_pred EEEeCCCcEEEEecC
Q 001224 1070 ALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1070 ~s~~~Dg~v~vW~~~ 1084 (1120)
++|++||-|+||...
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 888889999999976
No 118
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=3.1e-23 Score=235.57 Aligned_cols=243 Identities=14% Similarity=0.182 Sum_probs=176.4
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
+..+.+|.+.|.+++|+|+...+||+|+.||+|+|||+.++..... .+ ......+.+|...|.+++|+|
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i----------~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EI----------KDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cc----------ccceEEeecCCCcEEEEEECC
Confidence 3445569999999999998433799999999999999986532110 00 000113678999999999999
Q ss_pred CCCe-EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 437 DGSL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 437 dg~~-las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
++.. |++++.|++|+|||+.+++.+. .+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+.++.+|.
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9876 5789999999999999987543 343 567899999999999 78999999999999999999999999999
Q ss_pred cCeEEEeecc---CCCceEEEEEecCC----eEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 516 APVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 516 ~~v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
+.+.+.+++. .+++.+|++++.|+ +|++||++... ++.....+.. .. .+....
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~~ 270 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPHY 270 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEee
Confidence 8765544322 24557888888764 79999998643 2222211110 00 111111
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 636 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 636 (1120)
..+++.++++|+.|+.|++|++..+. +..+.......+..+++|.|+.
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 23345688899999999999998764 4444434444567889999964
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5e-24 Score=207.11 Aligned_cols=201 Identities=14% Similarity=0.237 Sum_probs=170.3
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-ee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EV 900 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~ 900 (1120)
|...|.+..|-..|+.+++++ |.+-.+||+++++.+..+.+|..+.+.++-+| ..+++++.+.|.+.++||+... ..
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence 888999999999999999999 99999999999999999999999999999999 8999999999999999999853 45
Q ss_pred eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001224 901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 979 (1120)
Q Consensus 901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~ 979 (1120)
+..|+||.+.|+++.|..| ..+++|+.|.+|+|||+..-.. .+...... .++..++.+..+..+|.- .+.
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRtd----S~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRTD----SPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeecC----CccceeEeecCCceEEeccCCc
Confidence 6889999999999999876 5788999999999999987322 22222222 468899999999999995 667
Q ss_pred eEEEEEcCCceeeecc--ccCCCCCCeeEEEECCCCc--EEEEEEcCCcEEEEEcCCc
Q 001224 980 QLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
.|++||+...+..+.. .-++|...|+|++|+.+-- -|++++.|..+.=|.+.+.
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8999999876655443 2358999999999987643 4888999999999998654
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-22 Score=184.70 Aligned_cols=247 Identities=14% Similarity=0.132 Sum_probs=201.5
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
.|.+.|.+.+|+|+|..+++++.|..|++..++.+..+..+..+ .-.-|++.|..++|-.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dl--------------------e~nmhdgtirdl~fld 146 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDL--------------------EFNMHDGTIRDLAFLD 146 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcce--------------------eeeecCCceeeeEEec
Confidence 48899999999999999999999999999877554443322221 1122889999999964
Q ss_pred ----CCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc--
Q 001224 835 ----NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-- 906 (1120)
Q Consensus 835 ----d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-- 906 (1120)
.+..+++++ |..|++-|...++....+.+|.+.|.++-- = ++-++++|+.|.+|++||++-..++.++..
T Consensus 147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 147 DPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred CCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 356788876 678999999999999999999999988742 2 678999999999999999998887777632
Q ss_pred -----cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCe
Q 001224 907 -----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 980 (1120)
Q Consensus 907 -----h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~ 980 (1120)
.++.|.+++..|.|++|++|-.|....+||+..+. .++.+..|.. .|.++.|||.-.|+.+ +.|..
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phsa---dir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHSA---DIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCcc---ceeEEEeCCCceEEEEecccce
Confidence 23679999999999999999999999999999854 5666666654 8999999999999999 59999
Q ss_pred EEEEEcCCc--eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 981 LAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 981 v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
|++-|+... ..+.......|...+-.+.|.|..--+++.+.|.++.+|-+.
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999998643 222333345789999999999999889999999999999764
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.7e-24 Score=201.32 Aligned_cols=256 Identities=18% Similarity=0.233 Sum_probs=206.0
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~ 440 (1120)
|.+.|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|+.++|.. -|.+
T Consensus 10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 8888998888889995 9999999999999998765311 1114899999999999987 8999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-c--eeEEeeccccC
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEAP 517 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~--~~~~~~~h~~~ 517 (1120)
||+++.||.|.||.-++|+ ..+..+...|...|++|+|.|.+-.++|++++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999999884 555567788999999999999988889999999999999998754 2 22345679999
Q ss_pred eEEEeeccCCC-c-----------eEEEEEecCCeEEEEecCCCC--CceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 518 VYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 518 v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
|++++|.|..- | ..|++|+.|..|++|+.+... ...++..|...|..+++.|.-..
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------- 221 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------- 221 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------
Confidence 99999977521 1 469999999999999988753 23457889999999999886420
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
...++++++.||++.||..+.. ....++. +.-...+..++||..|+.|++++.|+.|.+|.-+
T Consensus 222 -------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 -------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -------CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 0136999999999999987632 1111221 2223468899999999999999999999999643
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-23 Score=215.92 Aligned_cols=282 Identities=12% Similarity=0.161 Sum_probs=225.0
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
|..-|.+++++...+.+.+++. |.|+|||+..... +.....+......+.|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--------------------k~PvsqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--------------------KSPVSQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--------------------CCccccccccCcccceeeeEecCC
Confidence 7788888999999888887765 5899999854211 000011222235778999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 912 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 912 (1120)
|+.|++|+ ..++.|||+...... ..+........+++.+| |.++..+++.||.|.|||+.+..+++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 688999999865432 33443345678899999 999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224 913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 991 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~ 991 (1120)
||.+++||..|-||+-|.+||-||+.++.+... .+ ....|.++-.+|.+.+|++| .++.+.|.....-+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhh-----hh----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 999999999999999999999999998654221 11 11468999999999999998 667888887765443
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
. ..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+ +...|. ++..+- |.+++||
T Consensus 627 y---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 627 Y---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred e---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence 2 233679999999999999999999999999999999998886654 223244 777776 5799999
Q ss_pred EeCCCcEEEEec
Q 001224 1072 GLSDGGVHVFEP 1083 (1120)
Q Consensus 1072 ~~~Dg~v~vW~~ 1083 (1120)
|+.|..-.||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888875
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.1e-21 Score=212.97 Aligned_cols=510 Identities=13% Similarity=0.136 Sum_probs=316.9
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC---CeEEEEEC
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVAYS 446 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg---~~las~~~ 446 (1120)
-.||+|+++++.. .+..|.||...||+++. .+.+|..++..+.+.|.. .++.+++.
T Consensus 22 avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl 80 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCSL 80 (792)
T ss_pred cccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEec
Confidence 4689999975554 45899999999999886 488999999999998844 47889999
Q ss_pred CCeEEEEEccCCceeeeeeeecccccCeEEEEEcC----CCCceEEEEecCCC------------cEEEEECCC--Ccee
Q 001224 447 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCGDDK------------TIKVWDATN--GAKQ 508 (1120)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~s~d~------------~i~vwd~~~--~~~~ 508 (1120)
||.|++||...+..++ ++..+ .+|..+.+.| ... .+..+..|. +++-+.+.+ ....
T Consensus 81 ~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 81 DGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred CccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 9999999999998775 23221 2333333321 111 111111111 111111111 0011
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 588 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~ 588 (1120)
..+..|.. -.++...+.. . +.....+..+.+|+..... ..... +-..-++.-.+.+.++
T Consensus 155 d~~~~~~~-~~~I~~~~~g--e-~~~i~~~~~~~~~~v~~~~--~~~~~---------------~~~~~~Htf~~t~~~~ 213 (792)
T KOG1963|consen 155 DFLKEHQE-PKSIVDNNSG--E-FKGIVHMCKIHIYFVPKHT--KHTSS---------------RDITVHHTFNITCVAL 213 (792)
T ss_pred hhhhhhcC-CccEEEcCCc--e-EEEEEEeeeEEEEEecccc--eeecc---------------chhhhhhcccceeEEe
Confidence 11122222 1223333332 2 3333345667788776543 11111 1111122224678888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC--CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccc
Q 001224 589 DTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 666 (1120)
Q Consensus 589 ~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 666 (1120)
+|++++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+..|.+.+|.+.++.+.+ +...
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--LPRL 291 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--LPRL 291 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--cccc
Confidence 99999999999999999996433 2222222234556689999999999999999999999999999884221 1111
Q ss_pred cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccc
Q 001224 667 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 746 (1120)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 746 (1120)
... --....++|+........|+.|.+-...+.......
T Consensus 292 gs~-----------------------------------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 292 GSP-----------------------------------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred CCe-----------------------------------------eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 110 113456688888888888999998888766655555
Q ss_pred eeeccC----CccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224 747 RSLRLP----ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 822 (1120)
Q Consensus 747 ~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 822 (1120)
..+..+ .....+-.+.++++|.-+.++..+..|.+.+||+.+...- ....+...+...|.. .
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i------~~~~v~~~n~~~~~~--------n 396 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI------YKLQVCDENYSDGDV--------N 396 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee------eeEEEEeecccCCcc--------e
Confidence 544433 1234556678899997777888999999999998554321 111111112222221 1
Q ss_pred CCCCccEEEEccCCCEEEEEe---------CC--cEEEEEcCCCcee-----eeecCCCCCeEEEEEecCCCc-EEEEEe
Q 001224 823 PEEAVPCFALSKNDSYVMSAS---------GG--KISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNN-IIAIGM 885 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s---------dg--~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~-~lasg~ 885 (1120)
+...+++++.+..|.++++.. || .+++|-......- ....+|...+.+.++.+.-.. ..++++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 445688888888999999873 22 3889987643322 224568777666666653444 889999
Q ss_pred CCCcEEEEEeecc----------eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCc-ccccceeeeccCCC
Q 001224 886 DDSSIQIYNVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-EKQKNRFLQIPTGR 954 (1120)
Q Consensus 886 ~dg~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~~~ 954 (1120)
.||.++||-+... .+...-..|..++++++|+.||..|+ ++.|++|.+||..+. +..... +.
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~------~~ 549 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTE------GS 549 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccc------cc
Confidence 9999999998432 23333234889999999999996555 567889999999883 221111 11
Q ss_pred CCCCCCCcEEEEcc---CCcEEEEEeCCeEEEEEcCCceeee
Q 001224 955 TPTAQSDTRVQFHQ---DQIHFLVVHETQLAIFETTKLECVK 993 (1120)
Q Consensus 955 ~~~~~~i~~~~fsp---dg~~la~~~d~~v~i~d~~~~~~~~ 993 (1120)
.. ..+..++|.. ....+..+....+.+|++.++...-
T Consensus 550 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 550 RN--WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cc--cchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 10 2233333332 2223334577889999998887765
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.1e-22 Score=193.20 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=188.7
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
..+.|..|.|+|.+.. |++++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 5689999999999986 5566799999999998774432 334889999999987 56789
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 522 (1120)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+...+..++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987554 778999999999998777 69999999999999998866666665 344788876
Q ss_pred eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602 (1120)
Q Consensus 523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 602 (1120)
. .++.|+.|+.|..+.+||+++...........- +-.++++++-|++.-+++++-||
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence 4 336899999999999999998665442211110 11455666666667799999999
Q ss_pred eEEEEECCCC----ceeEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 603 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 603 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.|.+=.++.. +....++.|.. .-+|++++|+|--..|++|+.||.|.+||..+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 9988766655 23344444322 136889999999999999999999999998766
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=222.26 Aligned_cols=251 Identities=16% Similarity=0.193 Sum_probs=203.4
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
.|....+.++|.|+|..|++++.||.|++|+..... +....+.. +...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------------e~P~ti~~------~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------------EEPETIDI------SGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc------------------cCCchhhc------cCceeEEEee--
Confidence 477889999999999999999999999999863321 11111110 4556666665
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|+++|.|++|-.|++-++........+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 445888888 89999999988776555555667899999999 9999999999999999999999889999999999999
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceee
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 992 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~ 992 (1120)
|.|+|.+.+||+.+.||.|+||+++.+........-...........+..++|+|+|..+++ +.|+.|++|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998765432221111111111234678899999555555 89999999999999998
Q ss_pred eccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 993 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
..+....|...+..++|||+|+|||+++.||.|.|||+++
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8888777777799999999999999999999999999997
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.1e-23 Score=193.70 Aligned_cols=222 Identities=19% Similarity=0.268 Sum_probs=179.9
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC--CCCceEEEEecCCCcEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 498 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~ 498 (1120)
+...|.+.|..+...--|++||+++.|++|+|+.++++.....+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4667999999999988999999999999999999998876667779999999999999987 677 899999999999
Q ss_pred EEECCCCce--eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC---ceeeeCCCCceeEEEEcCC---
Q 001224 499 VWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD--- 570 (1120)
Q Consensus 499 vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 570 (1120)
||.-.+|+- ...+..|...|++++|.|..-|-.|++++.||.|.+.+.+..+. ......|.-.|.++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887743 34667899999999999999999999999999999999887622 2344567778899999886
Q ss_pred CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC----CEEEEEECCC
Q 001224 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 646 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg 646 (1120)
|...-.+... .-..|++|+.|..|+||+..+++-+..-...+|...|+.++|.|.- .++++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111110 0146999999999999999887544333334556689999999953 5799999999
Q ss_pred cEEEEEcc
Q 001224 647 GIKILATS 654 (1120)
Q Consensus 647 ~i~iwd~~ 654 (1120)
++.||-..
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999765
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-19 Score=202.20 Aligned_cols=253 Identities=16% Similarity=0.239 Sum_probs=205.3
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc-eeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
..|+..-+.|+|.|+|+ +|.+++.||.|++|+...-. ... .+.-+...|.+++. ++.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--ccc
Confidence 35888899999999999 59999999999999986542 111 12226667777765 455
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
+|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||+|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999876433 2334567899999999999 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
++.++| ++.+|++.+.||.|++||+.++....++..-...-.. .....+..++|+|++..++..+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeec
Confidence 999854 5579999999999999999987766555432110000 0022455678888888899999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
.|+.|++|+..++.....+........+.+++|+|+|+|||+++.+|.|.|||..+
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999988887665555588999999999999999999999999986
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=207.28 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=176.2
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec----
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---- 897 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---- 897 (1120)
-.+++.+++-+|+|.+++.|. .|.|++|.+.+|..+..+.+|...|+|+.|+- |+.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 456788999999999999997 89999999999999999999999999999998 999999999999999998853
Q ss_pred -----ceeeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224 898 -----DEVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 970 (1120)
Q Consensus 898 -----~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg 970 (1120)
-+.+..|..|.-+|+.+...+. ..+|+|+|.|.++++||+..+........ ...+.+++.+|-+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---------p~si~av~lDpae 229 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---------PSSIKAVALDPAE 229 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---------CCcceeEEEcccc
Confidence 3567888999999999988765 46899999999999999999754322211 1478999999999
Q ss_pred cEEEEE-eCCeEEEEEcCCce----------------eeeccccCCCCC--CeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 971 IHFLVV-HETQLAIFETTKLE----------------CVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 971 ~~la~~-~d~~v~i~d~~~~~----------------~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
+.+.+| .+|.|.+.++.+.. .+..+. +|.+ +|+|++++.||.+|++|+.||.|+|||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 999995 88999888765432 233333 6766 99999999999999999999999999999
Q ss_pred CcceeeeeC
Q 001224 1032 NLKLRCRIN 1040 (1120)
Q Consensus 1032 ~~~~~~~~~ 1040 (1120)
+.+.++++.
T Consensus 308 S~Q~iRtl~ 316 (476)
T KOG0646|consen 308 SKQCIRTLQ 316 (476)
T ss_pred hHHHHHHHh
Confidence 999988765
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.4e-22 Score=190.98 Aligned_cols=237 Identities=16% Similarity=0.253 Sum_probs=178.2
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCe
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 440 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~ 440 (1120)
.|++.|+++.+.+..-.++++|+.||.|.|||++.........+ +.+ ..|.. ...--.+|.-.|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~v--~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCIV--AKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeeec--cccCCccceeeeeeeEEeeecCce
Confidence 49999999999997555799999999999999976431110000 000 00110 1112568999999999999 8889
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCC-ceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
+.+++-|.+++|||.++-+..- .+. -.+.|++-+|||-.. ..++++|..|-.|++-|+.+|.+-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 9999999999999999966443 232 356899999998654 44788888899999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
++.|+|..+ -.|++|+.||.|++||++..
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRra-------------------------------------------------- 221 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRA-------------------------------------------------- 221 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecc--------------------------------------------------
Confidence 999998765 68899999999999999742
Q ss_pred CCCeEEEEECCCCceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224 600 DDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
.|..++.|..+++....++ ...+...++.++|+.++.++++.+.|..+++|+..+|..
T Consensus 222 -sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 222 -SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred -cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 1223333433333222222 223345789999999999999999999999999988843
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=206.52 Aligned_cols=217 Identities=16% Similarity=0.150 Sum_probs=177.8
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC--
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-- 503 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-- 503 (1120)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999999999999999999776 6789999999999999999 79999999999999873
Q ss_pred -------CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 504 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 504 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
+-++++.|..|+-+|+++...+.+...+|++++.|.++++||+..+..+.++..+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------------------ 217 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------------------ 217 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------------------
Confidence 3467788999999999999877766679999999999999999987655544332
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC----------------CceeEEEecCCCCCCcCeEEEcCCCCEEE
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA 640 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 640 (1120)
..+.+++++|-+..+++|+++|.|.+.++.. +..+..+.+|.....|+|++++-||.+|+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 2455566666666788888888887776643 22345555555545899999999999999
Q ss_pred EEECCCcEEEEEccCcchhhhhcccccccc
Q 001224 641 VSTNDNGIKILATSDGIRLLRTFENLAYDA 670 (1120)
Q Consensus 641 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 670 (1120)
+|+.||.++|||+.+. ++++.+.....++
T Consensus 294 SGd~dg~VcvWdi~S~-Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK-QCIRTLQTSKGPV 322 (476)
T ss_pred eeCCCCCEEEEecchH-HHHHHHhhhcccc
Confidence 9999999999999887 7777776444433
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.7e-23 Score=210.50 Aligned_cols=255 Identities=15% Similarity=0.210 Sum_probs=196.2
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
+..+++.|+.-|.++++|...++ +.||+. |.|+|||+...... .++ .+.. ...-..-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k--~Pv-----------sqLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNK--SPV-----------SQLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCC--Ccc-----------cccc-ccCcccceeeeEec
Confidence 34568889999999999999996 888875 89999999654211 010 0000 11234579999999
Q ss_pred CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 11223433334677899999999 79999999999999999999999999999
Q ss_pred cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
+.+.||.+ +.+|..|-+|+.|.+||.||++.+........ .. .|..+.++|++.++
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~S---------------------QIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SS---------------------QIFSLGYCPTGDWL 607 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hh---------------------hheecccCCCccce
Confidence 99999987 56678999999999999999998765543221 12 44455566666799
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.|-+++.+.+-..... ....+ +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus 608 avGMens~vevlh~skp-~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP-EKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eeecccCcEEEEecCCc-cceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 99999999888776433 33333 334457899999999999999999999999976554
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=7.9e-21 Score=209.97 Aligned_cols=205 Identities=18% Similarity=0.206 Sum_probs=149.5
Q ss_pred EEEEccCCCEEEEE-e-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeEeec
Q 001224 829 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~ 905 (1120)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 46677777766544 3 67889999888777666652 33468899999 888998888765 56778988877665543
Q ss_pred ccccceEEEEEccCCCEEE-EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEE
Q 001224 906 GHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 982 (1120)
Q Consensus 906 ~h~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~d~~v~ 982 (1120)
. ...+.+++|++++++|+ ++..++.|++||+.+++............+ ........++|+|+++++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 23467899999999885 445699999999998754322111111101 11123457899999998655 3567899
Q ss_pred EEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224 983 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 983 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+||+.+++.+..+. +...+.+++|+|+|++|++++ .+|.|+|||+.+++.+..++
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999888776543 245789999999999998864 58999999999999998887
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=200.50 Aligned_cols=248 Identities=13% Similarity=0.200 Sum_probs=196.2
Q ss_pred cccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 757 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
..+|.+.+|.|+|. .+++++....++.||+...+... ......-....+....+|++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k----------------------~~~~~g~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK----------------------LKPPYGVEEKSMERFEVSHD 314 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeecccccccc----------------------ccCCCCcccchhheeEecCC
Confidence 46788999999999 88888888999999885432211 11111112345778899999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc-ceEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITG 913 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~ 913 (1120)
+++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. |++.|++.+.+|.|++||+....+++.+....+ .=++
T Consensus 315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts 392 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS 392 (514)
T ss_pred CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee
Confidence 99999988 8999999999999998887 567899999998 888888888899999999999999988864322 2356
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccc-cceeeeccCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEcCCc
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 989 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~---~d~~v~i~d~~~~ 989 (1120)
+|.|+++.+||+|+..|.|.|||.++.-.. ..+++.....-. ..|+++.|++|++.||.+ ....+++-.+.+.
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 888899999999999999999997652211 122333332222 478999999999999984 5678999999999
Q ss_pred eeeeccccCCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 990 ECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 990 ~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
.....|..... -+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 470 TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 470 TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99888875432 5679999999999999999999999999864
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=189.00 Aligned_cols=295 Identities=17% Similarity=0.210 Sum_probs=218.4
Q ss_pred eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 508 (1120)
Q Consensus 429 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~ 508 (1120)
-.|+.||+.|.+||+|+.||.|.|||..+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999866333 6889999999999999999 7999999999999999999999
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 588 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~ 588 (1120)
+.+. ..++|+...|+|......+++--. ..-.+-++.... -..+..+++|..-. .-.+..|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence 9988 778999999999877555555433 223333333211 11222233332111 1112357
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224 589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 668 (1120)
Q Consensus 589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 668 (1120)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|+.|++.+.|+.||.|++..-... +.
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~r-- 233 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----GR-- 233 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----Cc--
Confidence 8889999999999999999999999998887544 246888999999999999999999999987532000 00
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224 669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 748 (1120)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 748 (1120)
++.+. ..
T Consensus 234 ------------------------------------------------------------~~e~e-----------~~-- 240 (405)
T KOG1273|consen 234 ------------------------------------------------------------DGEVE-----------PE-- 240 (405)
T ss_pred ------------------------------------------------------------cCCcC-----------hh--
Confidence 00000 00
Q ss_pred eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224 749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 828 (1120)
Q Consensus 749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 828 (1120)
| ++.| .-....=.
T Consensus 241 -------~-----------------------------------------------K~qD-------------vVNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQD-------------VVNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHH-------------HHhhhhhh
Confidence 0 0000 00223345
Q ss_pred EEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 829 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
+++||.+|.|++.++ ...++||....|.+++.+.+.. .....+.|+| -...+++- ..|.|++|....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 688999999998887 4679999999999999998877 4578899999 67677766 789999998654
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.2e-21 Score=187.19 Aligned_cols=283 Identities=15% Similarity=0.187 Sum_probs=209.5
Q ss_pred CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224 424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 503 (1120)
Q Consensus 424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~ 503 (1120)
...+.|+.|.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+-||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 356789999999999999999999999999999875332 234889999999998766 9999999999999999
Q ss_pred CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
++.... +..|..+|.+++..+.. ..+++|+-|++|++||.+.......+.... .|.+
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~------------------- 140 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYC------------------- 140 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEE-------------------
Confidence 887654 44599999999986544 479999999999999998633333322221 2332
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
.+-.++.|++|+.+..|.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=.+... +..+..
T Consensus 141 ----~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~sk 215 (323)
T KOG1036|consen 141 ----MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQSK 215 (323)
T ss_pred ----EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhhh
Confidence 333446799999999999999998765443322222335789999998888899999998877544332 110000
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224 664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 743 (1120)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 743 (1120)
+ . +|.+
T Consensus 216 k---y-----------aFkC------------------------------------------------------------ 221 (323)
T KOG1036|consen 216 K---Y-----------AFKC------------------------------------------------------------ 221 (323)
T ss_pred c---e-----------eEEe------------------------------------------------------------
Confidence 0 0 0000
Q ss_pred ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC
Q 001224 744 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 823 (1120)
Q Consensus 744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 823 (1120)
| .-+.++. - .
T Consensus 222 ------------H-------r~~~~~~----------~-----------------------------------------~ 231 (323)
T KOG1036|consen 222 ------------H-------RLSEKDT----------E-----------------------------------------I 231 (323)
T ss_pred ------------e-------ecccCCc----------e-----------------------------------------E
Confidence 0 0000110 0 2
Q ss_pred CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC
Q 001224 824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 886 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 886 (1120)
-.+|.+++|+|--..+|+|+ ||.|.+||+.+.+.+..+..-...|.+++|+. +|..||+|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 24688999999999999998 99999999999998888887778899999999 9999999874
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=3.2e-22 Score=213.14 Aligned_cols=434 Identities=15% Similarity=0.159 Sum_probs=274.2
Q ss_pred EEEEcC---CCCeEEEEECCCeEEEEEccCCcee---eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 431 RVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 431 ~l~~sp---dg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
+..|++ ....||.+.+||.|.++|......- +++.....|...|..+.|.| |+. .|++++.|.++++||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 356665 4557899999999999998764321 12345668999999999999 554 799999999999999999
Q ss_pred CceeEE--eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224 505 GAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582 (1120)
Q Consensus 505 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 582 (1120)
++++.. +.||.+.|.++||.+... ..+++|+.||.|.+||++-..... +..... +++.+|...+
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e~~~~------------~~~~~~n~~p 197 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LEEFDN------------RIYGRHNTAP 197 (720)
T ss_pred ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HHHHhh------------hhhccccCCC
Confidence 998876 899999999999987654 799999999999999997543110 000000 0000000000
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCe---EEEcCCCCEEEEEEC-CCcEEEEEccCcch
Q 001224 583 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIR 658 (1120)
Q Consensus 583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~ 658 (1120)
.|. . - ....++-|-... ..|.+ +.+..|...||+++. |+.|+|||++....
T Consensus 198 ------tps-k-p----~~kr~~k~kA~s-------------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 198 ------TPS-K-P----LKKRIRKWKAAS-------------NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred ------CCC-c-h----hhcccccccccc-------------CceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 000 0 0 001111121111 12333 556678888888877 99999999987632
Q ss_pred hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224 659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 738 (1120)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 738 (1120)
..+.-.....
T Consensus 253 ~~r~ep~~~~---------------------------------------------------------------------- 262 (720)
T KOG0321|consen 253 AYRQEPRGSD---------------------------------------------------------------------- 262 (720)
T ss_pred ccccCCCccc----------------------------------------------------------------------
Confidence 2211100000
Q ss_pred cCCCCccceeeccCC-ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224 739 ELSEPNQCRSLRLPE-NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 817 (1120)
Q Consensus 739 ~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 817 (1120)
.++. ....-.+.++.....|.++++.+.|+.|++|++......+.+... |.+
T Consensus 263 -----------~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s------------g~~---- 315 (720)
T KOG0321|consen 263 -----------KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS------------GKL---- 315 (720)
T ss_pred -----------CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc------------Ccc----
Confidence 0000 002345677888888999999999999999998654443322211 110
Q ss_pred CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224 818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 895 (1120)
Q Consensus 818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 895 (1120)
....-..-..+||+.++++|+ |...++|.+.+.+. ...+.+|...|++++|.|..-.-+|++++|..++||++
T Consensus 316 -----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 316 -----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred -----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 111122345689999999999 99999999987654 45678999999999999976677888899999999999
Q ss_pred ecce--------------eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCC
Q 001224 896 RVDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 961 (1120)
Q Consensus 896 ~~~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i 961 (1120)
..+- ....+++|.-.+..+.++-.+.+.... .+.+++|...
T Consensus 391 ~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP----------------------- 445 (720)
T KOG0321|consen 391 SNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP----------------------- 445 (720)
T ss_pred cCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------
Confidence 6542 223445666666555555444332222 3445555432
Q ss_pred cEEEEccCCcEEEEE-----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc-----------CCcE
Q 001224 962 TRVQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATV 1025 (1120)
Q Consensus 962 ~~~~fspdg~~la~~-----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----------Dg~v 1025 (1120)
..++..|++.-...+ ..-.|...+....+....-...+|-..|....+++.+..+++++- ++.+
T Consensus 446 ~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~ 525 (720)
T KOG0321|consen 446 VSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSV 525 (720)
T ss_pred cchhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccc
Confidence 233344444333331 122355555554444433333356667777777777777888876 7888
Q ss_pred EEEEcCC
Q 001224 1026 CVFSAAN 1032 (1120)
Q Consensus 1026 ~iwd~~~ 1032 (1120)
.+|....
T Consensus 526 ~s~~s~l 532 (720)
T KOG0321|consen 526 NSPNSSL 532 (720)
T ss_pred ccccccc
Confidence 8887644
No 137
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=5.1e-22 Score=204.58 Aligned_cols=233 Identities=20% Similarity=0.326 Sum_probs=181.6
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
.-.++.+|.+.-+.++|++...-.|++|+.|++|.+||+....... ........+.+|...|..++|+
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhcc
Confidence 3457788999999999999888789999999999999997654310 1111233688999999999999
Q ss_pred C-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeEEeec
Q 001224 436 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG 513 (1120)
Q Consensus 436 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~ 513 (1120)
+ +..++++++.|+.+.|||++++ ..+......+|.+.|+|++|+|-+.. +|||||.|++|++||+++ .+++.++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccC
Confidence 9 7788999999999999999974 34444567899999999999999887 899999999999999996 457899999
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
|...|..+.|+|..+ ..|++++.|+.+.+||+..-+....-.........+ .+.-|.+...|..+.|+|...
T Consensus 315 H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred CCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCCC
Confidence 999999999998766 699999999999999998755443211111111122 222233334566777777776
Q ss_pred EE-EEEeCCCeEEEEECC
Q 001224 594 RF-LAAGDDFSIKFWDMD 610 (1120)
Q Consensus 594 ~l-~~~~~dg~i~iwd~~ 610 (1120)
++ +++++|+.+.||++.
T Consensus 387 W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEEEecCCceEEEeecc
Confidence 55 557899999999985
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=9.2e-21 Score=201.81 Aligned_cols=451 Identities=12% Similarity=0.142 Sum_probs=282.2
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 445 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 445 (1120)
.|..++|-|||..|+++++ ..+.|||+..|..+. .+++|.+.|+|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 7899999999998777654 789999999998877 4999999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeecc
Q 001224 446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 525 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 525 (1120)
.|..|.+|+-.-...++ -.|.+.|.||.|+|-.. .+++++-. ..-+|........+ .+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence 99999999876544333 25999999999999988 58888753 45688865544322 11 2234555555
Q ss_pred CCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602 (1120)
Q Consensus 526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 602 (1120)
..||++++.|-.+|+|.+=+-.. +....+. +.+.+|.+++|+|... .|. ...+++.....
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G~-------------~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EGR-------------NDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CCc-------------cceEEEEeccc
Confidence 67889999999999998875443 3322222 3456778888877653 111 13566777778
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcc
Q 001224 603 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 682 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1120)
++.++.+. |+.+..-..-+ -...|+++-++|.++..|+.|+.+.+|-- .|.. +-++
T Consensus 204 TLSFy~Ls-G~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~Gvr-LGTv------------------- 259 (1081)
T KOG1538|consen 204 TLSFYQLS-GKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVR-LGTV------------------- 259 (1081)
T ss_pred eeEEEEec-ceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cCeE-Eeec-------------------
Confidence 88888874 44443222111 13578999999999999999999999842 2200 0000
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224 683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 762 (1120)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 762 (1120)
......|..
T Consensus 260 -----------------------------------------------------------------------g~~D~WIWt 268 (1081)
T KOG1538|consen 260 -----------------------------------------------------------------------GEQDSWIWT 268 (1081)
T ss_pred -----------------------------------------------------------------------cccceeEEE
Confidence 002345666
Q ss_pred EEEcCCCceEEEeccCceEEEeeecccccC------------------------CC---------------Ccccc---c
Q 001224 763 LIFTNSGNAILALASNAIHLLWKWQRTERN------------------------SS---------------GKATA---S 800 (1120)
Q Consensus 763 l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~------------------------~~---------------~~~~~---~ 800 (1120)
++..|++..++.|+.||+|..|++...+.. .. ...++ .
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 677777777777777777777665432100 00 00000 0
Q ss_pred cCceeecCCCCCcccccCCCC-CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce--------eeeecCCCCCeEEE
Q 001224 801 VAPQLWQPPSGIMMTNDVTDS-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--------MATFMPPPPAATFL 871 (1120)
Q Consensus 801 ~~~~~w~~~~g~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~--------~~~~~~~~~~i~~l 871 (1120)
..+.+|...++........-. .-.....+--+--.++.++.+.+..+..+|...-+. ++-++.-.+
T Consensus 349 eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GG----- 423 (1081)
T KOG1538|consen 349 EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGG----- 423 (1081)
T ss_pred ceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcC-----
Confidence 123344443333211100000 000001111111234566666677777777653111 111111111
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc
Q 001224 872 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP 951 (1120)
Q Consensus 872 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~ 951 (1120)
|.+..-|+.|..||.|.-.=+++.-.+ -+......|.|+..+...+.||+....++..++|+.+++. .++.+
T Consensus 424 ---P~gREgL~vGlknGqV~kiF~dN~~Pi-Ll~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp 495 (1081)
T KOG1538|consen 424 ---PPGREGLLVGLKNGQVLKIFVDNLFPI-LLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP 495 (1081)
T ss_pred ---CCCcceeEEEecCCcEEEEEecCCchh-heecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC
Confidence 225567888998987754333332222 2333557799999999999999999999999999999653 23322
Q ss_pred CCCCCCCCCCcEEEEccCCc-EEEEEeCCeEE
Q 001224 952 TGRTPTAQSDTRVQFHQDQI-HFLVVHETQLA 982 (1120)
Q Consensus 952 ~~~~~~~~~i~~~~fspdg~-~la~~~d~~v~ 982 (1120)
.+.+++|..... +++.+..|.+.
T Consensus 496 --------g~nSV~wNT~~E~MlcfT~~g~L~ 519 (1081)
T KOG1538|consen 496 --------GANSVAWNTQCEDMLCFTGGGYLN 519 (1081)
T ss_pred --------CCceEEeeccccceEEEecCCceE
Confidence 568889987543 44444445444
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.8e-20 Score=203.65 Aligned_cols=294 Identities=13% Similarity=0.157 Sum_probs=204.1
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999987655 444443 4678999999984 346778899999999999988887765544
Q ss_pred eEEEeeccCCCceEEE-EEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 518 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
+..+++++ +++.++ +++.|+.|++||+.+......+.. .. ....++++|++..++
T Consensus 75 ~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~---------------------~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV---------------------EPEGMAVSPDGKIVV 130 (300)
T ss_pred ccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC---------------------CcceEEECCCCCEEE
Confidence 45567654 445554 455689999999987544333321 11 123355566666788
Q ss_pred EEeCCC-eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCcchhhhhcccccccccccC
Q 001224 597 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS 674 (1120)
Q Consensus 597 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 674 (1120)
+++.++ .+.+||..+++......... ...+++|+|++++|++++ .++.|++||+.++ +....+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~---------- 196 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKIT---------- 196 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeee----------
Confidence 877664 57788998887766554322 357799999999886554 5899999998765 1111110
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224 675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754 (1120)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 754 (1120)
T Consensus 197 -------------------------------------------------------------------------------- 196 (300)
T TIGR03866 197 -------------------------------------------------------------------------------- 196 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
+...+. .. .......++|+|
T Consensus 197 ----------~~~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 197 ----------FEIPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred ----------eccccc------cc--------------------------------------------ccCCccceEECC
Confidence 000000 00 011123577888
Q ss_pred CCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEeecceeeEeecccccce
Q 001224 835 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 911 (1120)
Q Consensus 835 d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V 911 (1120)
++++++++. ++.+.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 888755542 6789999998888766553 445789999999 88888776 56899999999999999988765 555
Q ss_pred EEEEEcc
Q 001224 912 TGLAFSH 918 (1120)
Q Consensus 912 ~~l~~s~ 918 (1120)
++++++|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.5e-21 Score=202.58 Aligned_cols=313 Identities=17% Similarity=0.235 Sum_probs=227.9
Q ss_pred eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
...+.||++.|.++...|.|. +|++|+.||+|+||.+.+|.|++++. ..+.|.+++|.+.++...|+.+-... +.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 346889999999999999999 89999999999999999999999887 56789999999988866666665444 544
Q ss_pred EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE----eCCCeEEEEECCCCce----e
Q 001224 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----L 615 (1120)
Q Consensus 544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~ 615 (1120)
-+..-+..+.. +.+. ..|.++ ..++.+..|.-..... +
T Consensus 469 vnp~~G~~~e~----------------------~~t~------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v 514 (733)
T KOG0650|consen 469 VNPIFGDRLEV----------------------GPTK------------ELLASAPNESEPDAAVVTWSRASLDELEKGV 514 (733)
T ss_pred eCccccchhhh----------------------cchh------------hhhhcCCCccCCcccceeechhhhhhhccce
Confidence 44332211110 0000 112222 2356777886542211 1
Q ss_pred -EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhh
Q 001224 616 -TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 691 (1120)
Q Consensus 616 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1120)
..+. +...|..+.|+..|.||++...+ ..|.|.++... .... ++
T Consensus 515 ~~~I~---~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~---------------------PF------- 562 (733)
T KOG0650|consen 515 CIVIK---HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQS---------------------PF------- 562 (733)
T ss_pred EEEEe---cCCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccC---------------------ch-------
Confidence 2222 23469999999999999987654 34555555432 0000 00
Q ss_pred hhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCce
Q 001224 692 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 771 (1120)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 771 (1120)
.-..+.|.++.|+|...+
T Consensus 563 --------------------------------------------------------------~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 563 --------------------------------------------------------------RKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred --------------------------------------------------------------hhcCCceeEEEecCCCce
Confidence 113467889999999998
Q ss_pred EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEE
Q 001224 772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 850 (1120)
Q Consensus 772 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vw 850 (1120)
+++++.. .|++||+. .+.++...+. ....|..++++|.|..|+.|+ |+.+..+
T Consensus 581 lfVaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 581 LFVATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred EEEEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 8887765 67888763 3333332222 467799999999999999999 9999999
Q ss_pred EcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec------c---eeeEeecccccc----eEEEEE
Q 001224 851 NMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------D---EVKSKLKGHSKR----ITGLAF 916 (1120)
Q Consensus 851 d~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~------~---~~~~~l~~h~~~----V~~l~~ 916 (1120)
|+.- .+..+++..|...+++|+|++ .-.++++|+.||++.||.-.- . -.+..+.+|... |..+.|
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc
Confidence 9974 356788899999999999999 888999999999999985321 1 134678899876 889999
Q ss_pred ccCCCEEEEEeCCCCEEEE
Q 001224 917 SHALNVLVSSGADSQLCVW 935 (1120)
Q Consensus 917 s~d~~~l~s~s~Dg~v~iW 935 (1120)
+|...+|++++.||+|++|
T Consensus 714 HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCceEEecCCCceEEee
Confidence 9999999999999999998
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=5.7e-21 Score=184.50 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=186.1
Q ss_pred ccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224 754 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 832 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~ 832 (1120)
.+|.-.|..+.|-|- ..++.+++-|.+++|||.++.+.. .. + ..++.|.+-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------------------~~--F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------------------VD--F---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------------------EE--e---ecCceeehhhc
Confidence 358888999888884 445666777999999997542210 00 0 14566777777
Q ss_pred ccCCC---EEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeEee---
Q 001224 833 SKNDS---YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL--- 904 (1120)
Q Consensus 833 s~d~~---~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l--- 904 (1120)
||-.. ++|+|. +-.|++-|+.+|....++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. .+...+
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 77443 677777 6789999999999999999999999999999966778899999999999999753 333332
Q ss_pred -----------cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcE
Q 001224 905 -----------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIH 972 (1120)
Q Consensus 905 -----------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~ 972 (1120)
.+|.+.|.+++|+.|+.++++++.|..+++|+...|+............... ..-..+. +-+ +.+
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence 3578899999999999999999999999999999887544333222221111 0111122 223 333
Q ss_pred EEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224 973 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 973 la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
+..-.++.+.++++-.+..++.+. .|-..|.+.+|.|+-+.+.+|..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence 333567999999999999999887 77889999999999999999999999999986
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=4.4e-20 Score=196.71 Aligned_cols=174 Identities=13% Similarity=0.205 Sum_probs=129.6
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 507 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~ 507 (1120)
.|..++|-|||..|+.+..+ .+.+||.+.|..+. ++.+|.+.|++++|+.||+ .+++|+.|+.|.+|+.+- +-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~kl-EG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKL-EG 86 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccc-cc
Confidence 89999999999999887644 59999999998776 7999999999999999999 699999999999999542 22
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
+..+. |.+.|.|+.|+|-. +.|++++. ...-+|....... ........+.+.+
T Consensus 87 ~LkYS-H~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V-----------------------~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKYS-HNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSV-----------------------SKHKSSSRIICCS 139 (1081)
T ss_pred eeeec-cCCeeeEeecCchH--HHhhhcch-hhccccChhhhhH-----------------------HhhhhheeEEEee
Confidence 33333 89999999987654 67888875 3455675543211 1111122455666
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-CCCCCCcCeEEEcCCC
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG 636 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~ 636 (1120)
|..||.+++.|-.+|+|.+-+. +++....+.. .+...+|.+++|+|..
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCC
Confidence 7777779999999999999875 4444444433 3344578899998854
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.2e-23 Score=220.53 Aligned_cols=232 Identities=16% Similarity=0.256 Sum_probs=204.9
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|++|+.+|+|++||+..++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 777888888877888999998 78888999988878888999999999999999 8999999999999999999999999
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 980 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~ 980 (1120)
++|.||...+.+|.|+|-+.+.|+|+.|+.+++||+.. ..|.....+|. ..+..+.|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 99999999999999999999999999999999999985 23566666665 378899999999999995 6699
Q ss_pred EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE
Q 001224 981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus 981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~ 1060 (1120)
++|||+..|+....|. .|.+.+.++.|.|..-++++|+.|++|++||+++.+.+....+. ..| |. +.+
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999887 78999999999999999999999999999999999999776622 222 45 899
Q ss_pred ecCCCCCEEEEEeCCC
Q 001224 1061 AHPQEPNEFALGLSDG 1076 (1120)
Q Consensus 1061 ~~p~d~~~l~s~~~Dg 1076 (1120)
|+| ++..+.+|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 688888876554
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=193.35 Aligned_cols=292 Identities=15% Similarity=0.247 Sum_probs=222.3
Q ss_pred ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC--CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 471 ~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
.+.|++|.|.|... ++++++.|++++||-+.. ...++.+.-...+|.+.+|.+.+. ..+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence 46899999999988 899999999999998763 455677766778999999876432 3889999999999999987
Q ss_pred CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcC
Q 001224 549 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 628 (1120)
Q Consensus 549 ~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 628 (1120)
.+....- ...|.....+....+++++++++..+..|.|.+....+++.+.+++..+. |.
T Consensus 290 ak~~k~~------------------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~ 348 (514)
T KOG2055|consen 290 AKVTKLK------------------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VS 348 (514)
T ss_pred ccccccc------------------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---Ee
Confidence 5433211 11222233555666777778999999999999999999999999987654 88
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001224 629 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 708 (1120)
Q Consensus 629 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1120)
.++|+.|++.|++.+.+|.|.+||++.. .+++.+..
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D------------------------------------------- 384 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVD------------------------------------------- 384 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEee-------------------------------------------
Confidence 9999999999999999999999999876 33332211
Q ss_pred CCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224 709 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 788 (1120)
Q Consensus 709 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 788 (1120)
+ ..-.-++++.+++|.++++|+..|.|-|||.+.
T Consensus 385 -----------------------------~-----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 385 -----------------------------D-----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred -----------------------------c-----------------CccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 0 001224678889999999999999999998754
Q ss_pred cccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCC-
Q 001224 789 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPP- 864 (1120)
Q Consensus 789 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~- 864 (1120)
...+...+.+.. + ..-...|+++.|++|++.||.++ ...+++-.+.+......++..
T Consensus 419 ~~~s~~PkPik~-----------------~--dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 419 CFASTNPKPIKT-----------------V--DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred hhccCCCCchhh-----------------h--hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 322211111111 0 11466799999999999999988 477999998877666555443
Q ss_pred --CCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 865 --PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 865 --~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
-+.++||+||| .+.++|.|..+|.|.+|.+.
T Consensus 480 ~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 34689999999 89999999999999999864
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.8e-20 Score=179.96 Aligned_cols=275 Identities=12% Similarity=0.169 Sum_probs=207.9
Q ss_pred CCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 353 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 353 ~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
.|..+..++.+.. ..|+.||+.|.+ ||+|+.||.|.|||+.|...-. ++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3566677888777 999999999995 9999999999999998865322 689999999999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
+||+||+.|+++|.|..|.+||+..|..+..+ + ...+|+.+.|.|...+. ++..-.+..-.+-++..+... .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri---r-f~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI---R-FDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE---E-ccCccceeeeccccCCe-EEEEEecCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999876533 2 46799999999987763 444444444555555542221 111
Q ss_pred -ccccC--eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC-CceeEEEEcCCCCeEEecccccce-----
Q 001224 513 -GHEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSL----- 583 (1120)
Q Consensus 513 -~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~~~~~~i----- 583 (1120)
...+. +..-+-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++....++.+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 11111 111111245667899999999999999999998888777665 788889999988855544333322
Q ss_pred ---------------------------eEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC
Q 001224 584 ---------------------------GVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 635 (1120)
Q Consensus 584 ---------------------------~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 635 (1120)
..++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....+.|+|-
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp~ 304 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHPV 304 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccccc
Confidence 3477889999998876 456799999999999999976653 35678899998
Q ss_pred CCEEEEEECCCcEEEEEccCc
Q 001224 636 GCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 636 ~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
...+++- ..|.+++|.....
T Consensus 305 rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeeeec-cCCceEEEEeecc
Confidence 8777776 6799999987543
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.9e-22 Score=217.69 Aligned_cols=235 Identities=12% Similarity=0.305 Sum_probs=206.6
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
..|...|.|+..-..++ .+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++..+
T Consensus 25 ~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERL 84 (825)
T ss_pred hhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhh
Confidence 34888999999866667 69999999999999986543332 37899999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEE
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 520 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 520 (1120)
|+.|+.+|+|++||++.++.++ +|.||...+.++.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..
T Consensus 85 laagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred hcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEE
Confidence 9999999999999999998777 8999999999999999999 6899999999999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
+.|. ++|.++++|+.|.++++||+..++....|..|...+.++.|.|... .+.+|+.
T Consensus 160 l~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~---------------------Lla~Gs~ 216 (825)
T KOG0267|consen 160 LRLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV---------------------LLAPGSS 216 (825)
T ss_pred Eeec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhh---------------------hhccCCC
Confidence 9984 5678999999999999999999998888888888777777666543 6788999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224 601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645 (1120)
Q Consensus 601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 645 (1120)
|+++++||+++.+.+...+.. ...|.+.+|+|+++.+++|...
T Consensus 217 d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 999999999998888777654 5579999999999999988764
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.7e-20 Score=178.35 Aligned_cols=268 Identities=19% Similarity=0.375 Sum_probs=189.8
Q ss_pred cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 468 ~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
.+|.+-|.++.|.+-|+ .+++|+.|++|+|||.... .+....+.|.+.|..+.|.+.+-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999 5999999999999996543 45567789999999999998888999999999999999
Q ss_pred EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623 (1120)
Q Consensus 544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 623 (1120)
|.-.. ..+..+ =+-|.. ..++. ..
T Consensus 88 WEE~~----~~~~~~---------------------------------------------~~~Wv~-----~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEAH---------------------------------------------GRRWVR-----RTTLV--DS 111 (361)
T ss_pred eeecc----cccccc---------------------------------------------cceeEE-----EEEee--cC
Confidence 95321 111111 111211 12222 22
Q ss_pred CCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224 624 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 701 (1120)
Q Consensus 624 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1120)
...|+++.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 33688899998 57899999999999999875441
Q ss_pred ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224 702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 781 (1120)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 781 (1120)
.+.-|.+.. +++.+.. |-|
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~~---------------pp~------------ 166 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVID---------------PPG------------ 166 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhccC---------------Ccc------------
Confidence 111222211 0000000 000
Q ss_pred EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCCEEEEEeCC------cEEEEEc
Q 001224 782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSASGG------KISLFNM 852 (1120)
Q Consensus 782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~sdg------~i~vwd~ 852 (1120)
.+.....|+.|+| ...+||+|+|. .+.||..
T Consensus 167 ----------------------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 167 ----------------------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred ----------------------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 0223333444443 22467777643 6888876
Q ss_pred CCC----ceeeeecCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEEeecc--------------------eeeEeec
Q 001224 853 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK 905 (1120)
Q Consensus 853 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~--------------------~~~~~l~ 905 (1120)
... ..+.++..|..+|+.++|.|.-| .+||+++.|| |+||.+... +.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 533 34566789999999999999544 4899999999 999998731 2456678
Q ss_pred ccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
+|.+.|+.+.|.-.|..|+|.|.||.||+|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997654
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=199.10 Aligned_cols=290 Identities=12% Similarity=0.114 Sum_probs=206.6
Q ss_pred ceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEE
Q 001224 770 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 848 (1120)
Q Consensus 770 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~ 848 (1120)
..|+.+-++|.|.++|.....+. ++..++.. . ..|.+.|..+.|.|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence 35677777899999987543332 11111111 1 23999999999999777888887 89999
Q ss_pred EEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce---------------------------
Q 001224 849 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 899 (1120)
Q Consensus 849 vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--------------------------- 899 (1120)
+||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||++-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988877 899999999999999889999999999999999986321
Q ss_pred eeEeecccccceEE---EEEccCCCEEEEEeC-CCCEEEEECCCcccccce-ee--eccCCCCCCCCCCcEEEEccCCcE
Q 001224 900 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNR-FL--QIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~-~~--~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .. .....+......+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223446666666 667789999999988 999999999875432111 11 111111111235677777777888
Q ss_pred EEE-EeCCeEEEEEcCCceeeeccccCCCCC--CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224 973 FLV-VHETQLAIFETTKLECVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus 973 la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
|.+ +.|+.|+.|++.+...-......++.. --..=..|||+.+|++|+.|..+++|.+.+.+.--.+. .||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence 777 799999999998765433332223211 11122459999999999999999999998876543322 243
Q ss_pred CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
... |. .++|.|.+-.-++++++|-.+++|++..+-
T Consensus 360 t~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 TRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 222 44 788888766678888999999999996654
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=190.33 Aligned_cols=254 Identities=19% Similarity=0.282 Sum_probs=192.9
Q ss_pred CCCCceEEEEecCCC-eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCe
Q 001224 363 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~ 440 (1120)
+...|++++|+|... .++|+|...|.|-+||+.+.+...... .++..|.++|.+|.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 789999999999876 789999999999999996443332111 14788999999999999 6778
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce-eEEeeccccCeE
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 519 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~h~~~v~ 519 (1120)
+.+.|.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999998652 22223433455778899998888 577777777999999997654 566777888999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCce----eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
+++++|-.. .++++++.|++.+|||++...... ....|...|.+..|||.| ..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~---------------------gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG---------------------GTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC---------------------Cce
Confidence 999988655 799999999999999998754332 233444455555555544 469
Q ss_pred EEEeCCCeEEEEECC----CCceeEEEecCCCC---CCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 596 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++.+.|..|+|||.. ...+...+...... -.....+|.|+..++++|..-..|-|+|-..+
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 999999999999983 33444444422211 12345789999999999999889999987665
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.5e-20 Score=193.95 Aligned_cols=323 Identities=15% Similarity=0.296 Sum_probs=229.8
Q ss_pred eEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC--EEEEEECCCcEEE
Q 001224 573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKI 650 (1120)
Q Consensus 573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i 650 (1120)
.++.||. +.+.+++.+|.|.+|++|+.||+|+||.+.+|+++.++...+ .|.|++|+|.+. .||++..+ .+.|
T Consensus 394 lvyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~i 468 (733)
T KOG0650|consen 394 LVYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVLI 468 (733)
T ss_pred eeEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceEE
Confidence 3444544 488899999999999999999999999999999999998765 499999999654 45544443 4666
Q ss_pred EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceee----c
Q 001224 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----E 726 (1120)
Q Consensus 651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 726 (1120)
.+..-|.+..... .. ..+.. .
T Consensus 469 vnp~~G~~~e~~~---t~----------------------------------------------------ell~~~~~~~ 493 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP---TK----------------------------------------------------ELLASAPNES 493 (733)
T ss_pred eCccccchhhhcc---hh----------------------------------------------------hhhhcCCCcc
Confidence 5544331111100 00 00000 1
Q ss_pred cCCCcceeeecccCCCCc--cceeeccCCccccccEEEEEEcCCCceEEEeccC---ceEEEeeecccccCCCCcccccc
Q 001224 727 ESNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASV 801 (1120)
Q Consensus 727 ~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 801 (1120)
..+..+..|.-....... .+..+. |...|..+.|+..|.+|++...+ ..|.|+++....
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~----------- 557 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK----------- 557 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-----------
Confidence 122345566544222111 122222 77899999999999999988774 567777663211
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEE
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 881 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l 881 (1120)
+. ..+.. ..+.|.++.|+|...+|++++...|++||+.....+..+......|..++.+| .|.-|
T Consensus 558 --------sQ----~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl 622 (733)
T KOG0650|consen 558 --------SQ----SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL 622 (733)
T ss_pred --------cc----Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence 11 11111 46778999999999999999999999999999888888887788899999999 88888
Q ss_pred EEEeCCCcEEEEEeecc-eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCC
Q 001224 882 AIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 960 (1120)
Q Consensus 882 asg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1120)
+.|+.|+.+..||+.-. +..+++..|...|++|+|++.-.++++|+.||++.|+--.-... .++.+
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D----l~qnp--------- 689 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND----LLQNP--------- 689 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh----hhcCC---------
Confidence 89999999999999854 67788899999999999999999999999999999885221100 00000
Q ss_pred CcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCC----CCCeeEEEECCCCcEEEEEEcCCcEEEE
Q 001224 961 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVF 1028 (1120)
Q Consensus 961 i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~Dg~v~iw 1028 (1120)
+|+ .++. ..+| ...|..+.|.|..-+|++++.||+|++|
T Consensus 690 -----------liV----------------PlK~--L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 -----------LIV----------------PLKR--LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----------ceE----------------eeee--ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 000 0111 1244 3358899999999999999999999998
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=4.2e-20 Score=184.95 Aligned_cols=269 Identities=14% Similarity=0.241 Sum_probs=198.0
Q ss_pred CcceeeeccCCCCceEEEEecCC-CeEEEEEeCCCcEEEEecCCCcee-EeeceeeeccCCCCcccccccccCCCCceEE
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNR 431 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg-~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 431 (1120)
|..-...+.|.+.|+.+.-++-| ..+.|+=+..|.|.|||+...-.- ....+.+- .+...+...+.+|.+.=++
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~----~s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVK----DSEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccccc----ccccCceEEecccCcccee
Confidence 45555677899999999999875 445667777899999998542110 00000000 0112223357899999999
Q ss_pred EEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC---ce
Q 001224 432 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AK 507 (1120)
Q Consensus 432 l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~---~~ 507 (1120)
++||| .-..|++|..-+.|++|...+|.-......+.+|+..|-.++|||.... +|++||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 99999 3345888888889999999988755445567889999999999999887 8999999999999999988 44
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC---CCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
+.+ +.|.+.|+.+.|+... .+|++|+.||++++||++.. .++..+..|..+|+++.|+|...
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------------ 360 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------------ 360 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------------
Confidence 444 8899999999996554 48999999999999999864 45567788888888888887665
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------eEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCc
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNG 647 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 647 (1120)
..+++++.|..|.+||+....- -+.+-.|.+...+..+.|++. ..++++.+.||
T Consensus 361 --------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG- 431 (440)
T KOG0302|consen 361 --------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG- 431 (440)
T ss_pred --------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence 4688899999999999853221 112223444556888999985 44666666665
Q ss_pred EEEE
Q 001224 648 IKIL 651 (1120)
Q Consensus 648 i~iw 651 (1120)
+.||
T Consensus 432 fnVf 435 (440)
T KOG0302|consen 432 FNVF 435 (440)
T ss_pred eeEE
Confidence 3444
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=191.75 Aligned_cols=268 Identities=13% Similarity=0.170 Sum_probs=197.9
Q ss_pred CceEEEEecC-------CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCc------ccccccccCCCCceEEE
Q 001224 366 SPMSMDFHPV-------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM------PLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 366 ~v~~v~~spd-------g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~h~~~V~~l 432 (1120)
...|++|... |. ++|.|+.|..|.|||+.--..+. +...++.... ........+|++.|.++
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHH
Confidence 3456666432 45 59999999999999986322211 1111111111 11122355899999999
Q ss_pred EEcCC-CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224 433 IWSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 511 (1120)
Q Consensus 433 ~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 511 (1120)
+|+.+ ...||+||.|.+|++||+.+|++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+........
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCce
Confidence 99984 5689999999999999999999665 67789999999999998877 8999999999999999853333222
Q ss_pred eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224 512 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590 (1120)
Q Consensus 512 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~ 590 (1120)
-...+.|..++|.+... ..++++..||+|+-+|++.. ++.+++..|...|.++++++.-.
T Consensus 326 wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p------------------ 386 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP------------------ 386 (463)
T ss_pred EEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC------------------
Confidence 22457899999987654 57788889999999999987 67889999999999999887665
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhhc
Q 001224 591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
+.+++++.|+.|++|++............-......|.++.|+- .+++.|+..+.+++||+.+.....+.|
T Consensus 387 --~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 387 --GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred --cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 57899999999999998755443222211122345677778854 467778888889999998875444444
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-20 Score=204.98 Aligned_cols=283 Identities=15% Similarity=0.242 Sum_probs=207.2
Q ss_pred CCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcC-CCceEEEeccCceEEEeeecccccCCCCcc
Q 001224 719 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKA 797 (1120)
Q Consensus 719 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 797 (1120)
+...++.++. ..+++|.+........+..-.-....-.-.+..+.|.. +.+.|++++.+|.|.+||+...-.
T Consensus 50 ~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------ 122 (839)
T KOG0269|consen 50 DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------ 122 (839)
T ss_pred CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc------
Confidence 4444444443 45566766654443333221100011122234455553 456789999999999999853100
Q ss_pred ccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC-CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec
Q 001224 798 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875 (1120)
Q Consensus 798 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 875 (1120)
......+.. |...+.++.|++-. .+|++|+ ||+|++||++..+-..++.+....|..|+|+|
T Consensus 123 --------------nk~l~~f~E--H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 123 --------------NKLLTVFNE--HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred --------------chhhhHhhh--hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 011111223 99999999999855 5677888 99999999999888888888888999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCC
Q 001224 876 QDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 954 (1120)
Q Consensus 876 ~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 954 (1120)
..+..++++.+.|.+++||++. .++...+.+|.++|.++.|+|++.+|||||+|++|+|||+.+++.....++...
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--- 263 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--- 263 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec---
Confidence 8899999999999999999986 466788999999999999999999999999999999999998766555454443
Q ss_pred CCCCCCCcEEEEccCCcE-EEEE---eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC-CCcEEEEEEcCCcEEEEE
Q 001224 955 TPTAQSDTRVQFHQDQIH-FLVV---HETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 955 ~~~~~~i~~~~fspdg~~-la~~---~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd 1029 (1120)
.++.++.|-|+..+ ||++ .|-.|+|||++.--.-. .....|...++.++|-. |...|.+++.||+|..-.
T Consensus 264 ----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~-~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 264 ----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY-ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred ----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccc-eeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 47899999998665 4543 78899999997543322 22237899999999965 566789999999987655
Q ss_pred cCC
Q 001224 1030 AAN 1032 (1120)
Q Consensus 1030 ~~~ 1032 (1120)
+++
T Consensus 339 ~kn 341 (839)
T KOG0269|consen 339 FKN 341 (839)
T ss_pred hhc
Confidence 544
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.5e-21 Score=207.80 Aligned_cols=248 Identities=13% Similarity=0.205 Sum_probs=188.2
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 443 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las 443 (1120)
-.+..|+|+.--+.+|||++..|.|.+||+..... ..+..++..|+..|+++.|++ ...+|++
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep~iliS 151 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEPNILIS 151 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCccEEEe
Confidence 35567888865556899999999999999976210 011125889999999999999 6788999
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeEEeeccccCeEEEe
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYSVC 522 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~ 522 (1120)
||.||+|++||++..+... ++.+....|..|+|+|.... .++++.+.|.+++||++. .++...+.+|.++|.++.
T Consensus 152 GSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred cCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence 9999999999999877554 67788899999999997665 899999999999999985 566788899999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe--
Q 001224 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-- 599 (1120)
Q Consensus 523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 599 (1120)
|+| ++.+|++||.|+.|++||+.+......... ...++..+.|-|+.+ .+|++++
T Consensus 228 whP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcsmv 285 (839)
T KOG0269|consen 228 WHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCSMV 285 (839)
T ss_pred ecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhhcc
Confidence 987 568999999999999999986543322221 123445555555443 3466655
Q ss_pred CCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCc
Q 001224 600 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.||+|..-..+++
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 58889999997653 34555544 45788899976 5667788888888765444433
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-19 Score=173.15 Aligned_cols=259 Identities=14% Similarity=0.237 Sum_probs=192.3
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCC
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 439 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~ 439 (1120)
+|.+-|.|+.|.+.|++ +|+++.|++|.|||.......-... .....|.+.|..|.|.+ =|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCccccc
Confidence 48899999999999997 9999999999999975433221100 02557999999999976 599
Q ss_pred eEEEEECCCeEEEEEcc------CCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE----
Q 001224 440 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY---- 509 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~---- 509 (1120)
.+|+++.|+++.||.-. .+..-....++....+.|+.|.|.|....+.+++++.||.+|||+.-....+.
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 99999999999999752 12222334467778889999999999888899999999999999976643332
Q ss_pred --Eee-------ccccCeEEEeeccCCC-ceEEEEEecC-----CeEEEEecCCCC----CceeeeCCCCceeEEEEcCC
Q 001224 510 --IFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSAD 570 (1120)
Q Consensus 510 --~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~ 570 (1120)
.++ .+..+-.|+.|.++.- ..+|+.|+.+ +.++||...... ...++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 222 3556677888875542 2456666654 478889776544 23456778888999999887
Q ss_pred CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------eeEEEe-cCCCCCCcCeEEE
Q 001224 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 632 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~ 632 (1120)
-.+-+ ..|++++.|| |+||++.... .+..+. ...|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 54322 3588899999 9999987311 112221 2344558999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcc
Q 001224 633 NKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 633 s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
+-.|..|++.+.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999653
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=4e-19 Score=180.10 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=140.1
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
...+|..+.|.+++...+|||+.|..|+||.+..+..-.. .........|..|..+|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 3578999999998875699999999999999876442210 000111225889999999999999999999
Q ss_pred EEECCCeEEEEEcc--------C-----CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 443 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 443 s~~~dg~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999766 3 111223456889999999999999999 79999999999999999999999
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
.+..|...|..++|.+- ++++++-+.|...+.+.+..
T Consensus 160 ~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eccccccccceeecchh--hhhhhhhccCcccceeeeee
Confidence 99999999999998654 47999999988666665543
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.2e-19 Score=178.54 Aligned_cols=300 Identities=16% Similarity=0.221 Sum_probs=204.6
Q ss_pred ccccccEEEEEEcC----CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 754 NLRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~----~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
..|..+|.+++|++ +...+++......+.+|+...+. +........+..++.....
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfyt 94 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYT 94 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEE
Confidence 34778888999874 22234444444477777763211 0001011112236666777
Q ss_pred EEEccCC----CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224 830 FALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 904 (1120)
Q Consensus 830 l~~s~d~----~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 904 (1120)
++|+-|- -++|+|+ -|.|+|.|+.++++...+.+|...|+.+.|.|++.++|++++.|.+||+|++++..++..|
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 7776543 3667666 7999999999999999999999999999999977899999999999999999999999887
Q ss_pred ---cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc-------------eeeeccCCCCCC-------CCCC
Q 001224 905 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-------------RFLQIPTGRTPT-------AQSD 961 (1120)
Q Consensus 905 ---~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------~~~~~~~~~~~~-------~~~i 961 (1120)
.||.+.|.++.|+.+|.+++|+|.|.++++|++...+.... +.+.....|.+. ...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999985322110 001111111110 0122
Q ss_pred cEEEEccCCcEEEE-EeCCeEEEEEcC-Cceee-------------eccccCCCCCCeeEEEE--CCCCcEEEEEEcCCc
Q 001224 962 TRVQFHQDQIHFLV-VHETQLAIFETT-KLECV-------------KQWVPRESSAPITHATF--SCDSQLVYACFLDAT 1024 (1120)
Q Consensus 962 ~~~~fspdg~~la~-~~d~~v~i~d~~-~~~~~-------------~~~~~~~h~~~v~~l~~--s~dg~~l~s~~~Dg~ 1024 (1120)
-++.|- |.++++ +.++.|..|... -.+.+ ..+.. ....|+-+.| .|-++.||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 222222 467777 788899999872 22221 11211 1445655555 556889999999999
Q ss_pred EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1025 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1025 v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
|++||++..+....-. +.....+..|. ..+|+. |+.+|+...+|++|.-||.-
T Consensus 331 v~vwdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999887742211 22121233355 788888 79999999999999999853
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=5.1e-17 Score=190.25 Aligned_cols=371 Identities=25% Similarity=0.421 Sum_probs=269.2
Q ss_pred eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc-eeEeeceeeeccCCCCcccccccccCCC-CceEEEEE-c
Q 001224 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 435 (1120)
Q Consensus 359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~-s 435 (1120)
....|...+.++.|.+.+.. ++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 35569999999999999995 8888899999999998876 3321 33322 47777777 8
Q ss_pred CCCC-eEEEEEC-CCeEEEEEccC-CceeeeeeeecccccCeEEEEEcCCCCceEEEEecC-CCcEEEEECCCCceeEEe
Q 001224 436 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 511 (1120)
Q Consensus 436 pdg~-~las~~~-dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~ 511 (1120)
+++. +++..+. |+.+.+|+..+ ..... .+..|...|..++|+|++. ++++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999997 44333 5788999999999999999 6777775 999999999999999999
Q ss_pred eccccCeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224 512 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589 (1120)
Q Consensus 512 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~ 589 (1120)
.+|...|.++.|. +++. .+++++.|+.|++||........ .+..+.... .. .|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence 9999999999997 4444 55555899999999877433333 233333221 11 455
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224 590 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 668 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 668 (1120)
+++..+++++.|+.+++|+...... +..+. .+...+.++.|+|++..+++++.|+.+.+|+..+.. ......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence 5556788999999999999987665 44443 334578899999988888889889889999765441 000000
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224 669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 748 (1120)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 748 (1120)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224 749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 828 (1120)
Q Consensus 749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 828 (1120)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222344
Q ss_pred EEEEccCCCEEEEE-e-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEEeecceeeEeec
Q 001224 829 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~~~~~~~l~ 905 (1120)
.+.+.+++..++.+ . |+.+.+|+.............. .+..+.+.+ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 44442222344444 3 6677778777665222222222 288899988 7 55554 7899999999999888777766
Q ss_pred ccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
.+...+....+++++..+++++.++.+++|+...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547889999999999999999999999999887
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.4e-19 Score=178.10 Aligned_cols=258 Identities=19% Similarity=0.269 Sum_probs=195.0
Q ss_pred CCCCceEEEEecC---CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-C
Q 001224 363 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G 438 (1120)
Q Consensus 363 h~~~v~~v~~spd---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g 438 (1120)
|...-..++|+-| +..++|+|+.-|.|+|.|+.+++.... +.+|.+.|+.+.|.|+ .
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence 6677788888764 455788888999999999999887653 7899999999999995 5
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE---------
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--------- 509 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~--------- 509 (1120)
++|+++|.|..|++|++++..++..+.-+.||.+.|.++.|+++|. +++++|.|.+|++|++...+...
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 8999999999999999999999987777889999999999999999 79999999999999998432100
Q ss_pred -------------------EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEE-EEc
Q 001224 510 -------------------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTM-AYS 568 (1120)
Q Consensus 510 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~-~~s 568 (1120)
+-.-|...|.|+.|.. +++++-+.++.|..|..... +.......+....+-+ .|.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 1124667777777643 58999999999999976321 1111111111111111 000
Q ss_pred CCCCeEEecccccceeE--EEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224 569 ADGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTN 644 (1120)
Q Consensus 569 ~~g~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 644 (1120)
.....++. .+++|-++.|+.|...|.|++||++...+. .++........|...+|+.||..|+...+
T Consensus 303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 11123443 355677789999999999999999887652 33433444567899999999999999999
Q ss_pred CCcEEEEEcc
Q 001224 645 DNGIKILATS 654 (1120)
Q Consensus 645 dg~i~iwd~~ 654 (1120)
|++|.-||..
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999853
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.8e-19 Score=182.96 Aligned_cols=293 Identities=12% Similarity=0.179 Sum_probs=212.5
Q ss_pred eeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceE-EEeccCceEEEeeecccccCCCCcccccc
Q 001224 723 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV 801 (1120)
Q Consensus 723 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 801 (1120)
+..++....+++||+............+ ....+.++.|+.....+ +..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 4455556789999998765544443322 22348888888776522 3344567888886311
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcE
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 880 (1120)
.++++...... ....-.|++......|+++|+ .+.|+|||++...+.+.++.|...|++|.+.- ...+
T Consensus 67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 12221111111 222445666556668999988 89999999997777888999999999999998 7789
Q ss_pred EEEEeCCCcEEEEEeecceeeEeeccccc-ceEEEEEccCCCE-EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224 881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 958 (1120)
Q Consensus 881 lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 958 (1120)
||+++..|.|.|..+.++.....|....+ .|.-+.|++..+. |.+++.+|.|.+||+..- .........|..
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~----sp~~~~~~~HsA-- 209 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM----SPIFHASEAHSA-- 209 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----CcccchhhhccC--
Confidence 99999999999999999887777765534 4558899998765 568899999999999873 234444555554
Q ss_pred CCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc-e
Q 001224 959 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1035 (1120)
Q Consensus 959 ~~i~~~~fspdg~~la~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~-~ 1035 (1120)
+...+||+|....|++ |.|..|.+||.........+.. ..+.+.++|+++|.+|++|+..|.|..||+...+ +
T Consensus 210 -P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 210 -PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred -CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 6788999997766555 7999999999987776666653 6689999999999999999999999999997544 3
Q ss_pred eeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224 1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus 1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
+..+. .|... |. .++|-|.
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~s 304 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQPS 304 (673)
T ss_pred ceEee-------ecccc-ee--EEEeeec
Confidence 43332 22233 55 7777773
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3.4e-19 Score=178.50 Aligned_cols=175 Identities=25% Similarity=0.389 Sum_probs=144.2
Q ss_pred cceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 355 KTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 355 ~~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
.+.+.++ +|+..=++++|||-..--|++|..-+.|++|...+|.-... ..-+.+|+..|-.++
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence 3344444 59999999999993322388888889999999988754321 012667999999999
Q ss_pred EcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC---CceeE
Q 001224 434 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQY 509 (1120)
Q Consensus 434 ~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~---~~~~~ 509 (1120)
||| ....||+||.||+|+|||++.+....... .+.|.+.|+-|.|+.+-. +|++|++||+++|||++. ++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 999 56789999999999999999985433332 478999999999998888 899999999999999984 67889
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 549 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 549 (1120)
.|+.|..+|+++.|+|..+ ..|++++.|..|.+||+...
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeecc
Confidence 9999999999999998776 57888889999999998753
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2.3e-16 Score=184.80 Aligned_cols=368 Identities=23% Similarity=0.395 Sum_probs=269.7
Q ss_pred ecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeecccc-CeEEEeeccCCCce-EEEEEec-CCeEE
Q 001224 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK 542 (1120)
Q Consensus 467 l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 542 (1120)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567899999999999999 68888899999999998887 6777776443 67777764 55555 5555444 99999
Q ss_pred EEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEEec
Q 001224 543 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 543 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 620 (1120)
+|+... ......+..|...+..+.++|++. .+++++. |+.+++|+...+..+..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeecc
Confidence 999987 556666666766666666666654 6777775 99999999999888888876
Q ss_pred CCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCcchhhh-hcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224 621 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 698 (1120)
Q Consensus 621 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1120)
+ ...+.+++|+|++. .+++++.|+.|++||...+ .... .+.
T Consensus 197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~---------------------------------- 239 (466)
T COG2319 197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLS---------------------------------- 239 (466)
T ss_pred C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecC----------------------------------
Confidence 4 44799999999998 5555588999999965422 0000 000
Q ss_pred cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC
Q 001224 699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 778 (1120)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 778 (1120)
T Consensus 240 -------------------------------------------------------------------------------- 239 (466)
T COG2319 240 -------------------------------------------------------------------------------- 239 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224 779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 857 (1120)
Q Consensus 779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~ 857 (1120)
+|.... ...|++++.++++++ |+.+++|+......
T Consensus 240 -------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 240 -------------------------------------------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -------------------------------------------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 022221 115666665666555 77777777765443
Q ss_pred -eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec--ccccceEEEEEccCCCEEEEE-eCCCCEE
Q 001224 858 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC 933 (1120)
Q Consensus 858 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~v~ 933 (1120)
...+..|...+.++.|+| ++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.
T Consensus 276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 344456788899999999 77788879999999999988877666665 888889999994333556555 6889999
Q ss_pred EEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC
Q 001224 934 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus 934 iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 1011 (1120)
+|++.... ........ ..+..+.+++ ...+.. ..++.+.+|+............ +...+....+++
T Consensus 355 ~~~~~~~~-----~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 422 (466)
T COG2319 355 LWDLRTGK-----PLKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG--HTSRVTSLDFSP 422 (466)
T ss_pred eeecCCCc-----eeEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC--CCCcEEEEEECC
Confidence 99998854 11111111 1267888888 544443 4788999999999888776652 127899999999
Q ss_pred CCcEEEEEEcCCcEEEEEcCC
Q 001224 1012 DSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 1012 dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
++.++++++.++.+++|+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEecCCCcEEEEeccC
Confidence 999999999999999999988
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=178.81 Aligned_cols=315 Identities=12% Similarity=0.142 Sum_probs=222.7
Q ss_pred CCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC----CceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224 503 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGF 578 (1120)
Q Consensus 503 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 578 (1120)
.+-......+-+..+|++++|+|..+..++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|...
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~------ 247 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT------ 247 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh------
Confidence 333444555668899999999999988899999999999999996432 3445667777788888877765
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224 579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
..+++.|.||+|+.-|++++.....+........+.++.|+.+...++.+..-|.+.+||.+++..
T Consensus 248 --------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 248 --------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred --------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 579999999999999998775444443322333567788888888888888888999999998865
Q ss_pred hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224 659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 738 (1120)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 738 (1120)
....+.-|...+... ++.|. ...++++++.|++.++||+.
T Consensus 314 ~~~~~~lh~kKI~sv------~~NP~----------------------------------~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 314 EYENLRLHKKKITSV------ALNPV----------------------------------CPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred cchhhhhhhccccee------ecCCC----------------------------------CchheeecccCcceeeeehh
Confidence 555555554432221 23332 25678999999999999998
Q ss_pred cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224 739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 818 (1120)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 818 (1120)
........ .+.. ..|...|.++.|||++-.|++.+.|..|+|||..- +.-|+...+.......
T Consensus 354 ~l~~K~sp-~lst--~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 354 QLRGKASP-FLST--LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNR 416 (498)
T ss_pred hhcCCCCc-ceec--ccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeeccCc
Confidence 76655431 1111 34899999999999988899999999999998620 1122333332222111
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC-CeEE-EEEecCCCcEEEEEeCCCcEEEEEe
Q 001224 819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYNV 895 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~-l~~sp~d~~~lasg~~dg~v~vwd~ 895 (1120)
.+ .--...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|-+..++|.|+..|.|+||.-
T Consensus 417 t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 417 TG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 00 011233467999999999998 67899999998887777543332 4554 4799944446666677889998864
Q ss_pred e
Q 001224 896 R 896 (1120)
Q Consensus 896 ~ 896 (1120)
.
T Consensus 495 k 495 (498)
T KOG4328|consen 495 K 495 (498)
T ss_pred C
Confidence 3
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.4e-19 Score=181.23 Aligned_cols=196 Identities=16% Similarity=0.241 Sum_probs=157.6
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeee------------------cccccCeEEEEEcCCCCceEEEEecCCCcEE
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l------------------~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~ 498 (1120)
-|+|+|.|+.|..|.|||+.--..+.+...| .+|++.|.+++|+..-+. +|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 4789999999999999998643323222222 379999999999998877 899999999999
Q ss_pred EEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224 499 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 578 (1120)
Q Consensus 499 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 578 (1120)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.|...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998764 48999999999999999985332221112233455555555443
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCc
Q 001224 579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..++++..||+|+-+|++.. +++.+++.|.. .|.++++++ ...++++++.|+.|++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 46788889999999999875 88999988765 899999998 4567899999999999998654
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-18 Score=179.13 Aligned_cols=211 Identities=17% Similarity=0.277 Sum_probs=166.9
Q ss_pred CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC
Q 001224 767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 845 (1120)
Q Consensus 767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg 845 (1120)
....++++++..+.|+|||++ .+++...+.+ |...|+++.++-...|||+++ .|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~-----------------------~kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLR-----------------------AKLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred hcceeeeccCcCceeeehhhH-----------------------HHHHhhhccC--CcceeEEEEecCCcceeEEeccCC
Confidence 344778999999999999873 2234444555 999999999999999999999 68
Q ss_pred cEEEEEcCCCceeeeecCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe-ecccccceEEEEEccCC-CE
Q 001224 846 KISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NV 922 (1120)
Q Consensus 846 ~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~ 922 (1120)
.|.|..+.++....+|... ...|.-+.|+|....+|.+++++|.|.+||+.....+.. ...|..+...|+|+|.. .+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 8999999998887777644 345679999996667888999999999999987665544 46799999999999975 56
Q ss_pred EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee-eeccccCCC
Q 001224 923 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-VKQWVPRES 1000 (1120)
Q Consensus 923 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~-~~~~~~~~h 1000 (1120)
|++.|.|..|.+||+..... ..++... .+...++|+++|.+|++| ..|.|..||++..+. +... ..|
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s--~~~l~y~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--sah 292 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQAS--TDRLTYS-------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--SAH 292 (673)
T ss_pred EEEecccceEEEeecccccc--cceeeec-------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe--eec
Confidence 78999999999999986322 2222211 256899999999999997 889999999986543 3333 378
Q ss_pred CCCeeEEEECCCC
Q 001224 1001 SAPITHATFSCDS 1013 (1120)
Q Consensus 1001 ~~~v~~l~~s~dg 1013 (1120)
...|++++|-|..
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 8899999997654
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.6e-18 Score=177.95 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=132.5
Q ss_pred eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
.+|.||.+.|+|++|+.+|. +|++||+|-.+.|||.-..+.++.+ .||.+.|.++.|.|..+...+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36899999999999999999 8999999999999999988888776 68999999999999988899999999999999
Q ss_pred EecCCCCC----------ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001224 544 WLYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613 (1120)
Q Consensus 544 wd~~~~~~----------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 613 (1120)
+|+...+. ...+..|...|..++..|++. +.+.++++||+|+-+|++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCc
Confidence 99985322 223344455555555555554 678999999999999998632
Q ss_pred e-eEEE-------ecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEcc
Q 001224 614 L-LTSI-------DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 614 ~-~~~~-------~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 654 (1120)
. -... ..........|+.++| +..+|++|+.|-..++||.+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1 1110 1111123467899999 67789999999999999964
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=166.59 Aligned_cols=506 Identities=14% Similarity=0.142 Sum_probs=284.7
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
.|...|.|+.|+.... ++.+ +.|..+.+|.-.+........+. ....+.. -|-.+- +..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p-----~df~pt~-----~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLP-----DDFVPTD-----MHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCC-----cccCCcc-----cccccc-ccCCCCCcceE
Confidence 4667778999999988 3444 45566655554333222111100 0000000 010000 00000134578
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 521 (1120)
+.++.||.+.|-+-...- -+ ....|.+.|.+-.|+|||. -|+++|.||.|++|. ++|....++.....+|.|+
T Consensus 79 ~i~s~DGkf~il~k~~rV-E~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSARV-ER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccchh-hh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 888999999888755421 22 5778999999999999999 599999999999999 8888877777778899999
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 601 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 601 (1120)
+|.|+.+ ..+++.+ +.+.+=-+.....+.....|.+-|.+ +.|++..+.+++|++|
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~---------------------~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLS---------------------LSWSTQSNIIASGGED 207 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEE---------------------eecCccccceeecCCc
Confidence 9987765 4555544 45555555554555555666555544 4555555689999999
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224 602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 681 (1120)
Q Consensus 602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1120)
-..++||. .|..+..-..|.. +|++++|.|+ +.++.++.+ +.|+=
T Consensus 208 ~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~n-t~R~~------------------------------ 252 (737)
T KOG1524|consen 208 FRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSYN-TARFS------------------------------ 252 (737)
T ss_pred eeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeeee-eeeec------------------------------
Confidence 99999997 4555555555544 7999999999 666665542 33210
Q ss_pred ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224 682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 761 (1120)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~ 761 (1120)
....+.|.
T Consensus 253 ------------------------------------------------------------------------~p~~GSif 260 (737)
T KOG1524|consen 253 ------------------------------------------------------------------------SPRVGSIF 260 (737)
T ss_pred ------------------------------------------------------------------------CCCccceE
Confidence 01346788
Q ss_pred EEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE
Q 001224 762 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 841 (1120)
Q Consensus 762 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~ 841 (1120)
.++||+||..+++++..|.+.+=-.-.. ++ + -+.+=++
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~ieq----------------------~l-------------~-------~~n~~~t 298 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYAIEQ----------------------QL-------------V-------SGNLKAT 298 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeeeehh----------------------hh-------------h-------hccceeE
Confidence 9999999999999999988765221000 00 0 0001111
Q ss_pred Ee-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCC
Q 001224 842 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 920 (1120)
Q Consensus 842 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 920 (1120)
.. ...|.+-|+.++.+ ..+. ....|...++.. + +|+++. ...|++|.-........+.+....+.-+.-+. .
T Consensus 299 ~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq~e-k 371 (737)
T KOG1524|consen 299 SKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE-K 371 (737)
T ss_pred eeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhhhh-h
Confidence 11 34466666665443 2222 344566666554 2 333332 23677776554443344444433332111111 1
Q ss_pred CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--E-eCCeEEEEEc-CCceeeeccc
Q 001224 921 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECVKQWV 996 (1120)
Q Consensus 921 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~-~d~~v~i~d~-~~~~~~~~~~ 996 (1120)
.+++ ....++.+|..+...... ..++|... .....-..|-....|+. . ....+.+||. .+|+....-.
T Consensus 372 ~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 372 YFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred heEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 1222 222345555544411100 00111110 01111122323334555 2 3346788998 6666543322
Q ss_pred cCCCCCCeeEEEEC----CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEE
Q 001224 997 PRESSAPITHATFS----CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus 997 ~~~h~~~v~~l~~s----~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
.-.|...|..++.. ++.+.++--...+.++|=.+.+.-...++- .-| .-|. .++|+. -.-++.|
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG---TmVh--tLawnd--ttNiLcg 511 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG---TMVH--TLAWND--TTNILCG 511 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh---hhhh--hhhhcc--ccceeee
Confidence 12356667666664 355667777777777776654432221111 111 1123 788884 4567778
Q ss_pred eCCCcEEEEecCCCC
Q 001224 1073 LSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1073 ~~Dg~v~vW~~~~~~ 1087 (1120)
-.|+.+.||-.++.-
T Consensus 512 lqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 512 LQDTCFSVWYYPNEV 526 (737)
T ss_pred eccceEEEEEcCCcc
Confidence 889999999877643
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.4e-18 Score=199.05 Aligned_cols=258 Identities=14% Similarity=0.182 Sum_probs=200.3
Q ss_pred eccCCCCceEEEEecCCCe---EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 360 TLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~---lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
.+.-...-+.++|.+.|.. +||.|..||.|.+||...-. .. ..... ......|++.|..+.|++
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~----------~~~~~-la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--AN----------ASEEV-LATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhc--cC----------cchHH-HhhhcccCCceeeeeccc
Confidence 3345567789999998876 69999999999999987520 00 00000 113667999999999999
Q ss_pred CC-CeEEEEECCCeEEEEEccCCceeeeeeeec--ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224 437 DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 513 (1120)
Q Consensus 437 dg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 513 (1120)
.+ ++||+|+.||.|.|||+..-+. .+.+. .-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~t---P~~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPET---PFTPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCC---CCCCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccccc
Confidence 55 5999999999999999987432 11221 24568999999988777 899999999999999999988877766
Q ss_pred ccc--CeEEEeeccCCCceEEEEEecCC--eEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224 514 HEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 588 (1120)
Q Consensus 514 h~~--~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~ 588 (1120)
|.+ .+..+.|||+...+++++...|+ .|.+||++... ....+..|...|.++.|++.+.
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~---------------- 266 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP---------------- 266 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------
Confidence 654 46788999987654444444443 69999998644 4556678888888888877664
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCc
Q 001224 589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.+|++++.|+.|.+||..+++.+..+...+ ..+..+.|.|.. ..+++++-||.|.|+.+...
T Consensus 267 ----~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 ----RLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ----hhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 578999999999999999999999998643 479999999954 48889999999999998765
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=8.8e-17 Score=158.06 Aligned_cols=228 Identities=14% Similarity=0.158 Sum_probs=167.4
Q ss_pred CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc
Q 001224 767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 846 (1120)
Q Consensus 767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~ 846 (1120)
|+..++++.+.+.-|.+||.-+++....-.. +|. ...-....+++|+|||.+|.+|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~--------ydh------------~de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRA--------YDH------------QDEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhh--------hhh------------HHhhhhheeEEecCCCCeEeecccce
Confidence 5667788888888888887633322111100 000 00123355899999999999999999
Q ss_pred EEEEEcC-CCceee---ee----cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEcc
Q 001224 847 ISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 918 (1120)
Q Consensus 847 i~vwd~~-~~~~~~---~~----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 918 (1120)
|++||+. .|..-. ++ .+..+-|.+++|+|.+.+.+|+|+....+-||.-..+..+..+-+|.+.|+.+.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 9999993 333211 11 123556899999998888999999999999999888899999999999999999999
Q ss_pred CCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEE--EEccCCcEEEEE-eCCeEEEEEcCC-ceeee
Q 001224 919 ALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV--QFHQDQIHFLVV-HETQLAIFETTK-LECVK 993 (1120)
Q Consensus 919 d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~fspdg~~la~~-~d~~v~i~d~~~-~~~~~ 993 (1120)
||+.|.+|+. |-.|..||++.... ++-.+..|... .-..+ ...|+|++|++| .||.|++||+++ +..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~--TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGD--TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccc----hhhhhhhhccC--ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 9999999886 67799999987443 22223333221 12334 446889999997 999999999998 66555
Q ss_pred ccccCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224 994 QWVPRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus 994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
.+. .|...+..+++.|-=..+++++..
T Consensus 335 v~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 335 VTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccc--cccccccceecCcccceeeeccCc
Confidence 443 678999999999997778877643
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=8.8e-17 Score=163.30 Aligned_cols=301 Identities=16% Similarity=0.183 Sum_probs=213.0
Q ss_pred cccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 757 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
..++..+.|.+++. .+++++.|..|++|.++......... .+ .....+. .|...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~-----~V---------~y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM-----KV---------EYLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce-----eE---------EEeeccc--CCcceeEEEEEcCC
Confidence 46788889988776 89999999999999986543221110 00 0111122 39999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcC--------C--------CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 836 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
|..+|+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999765 2 334456788999999999999 9999999999999999999999
Q ss_pred eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccccee---eeccCCCC------------CCCCCCcE
Q 001224 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRT------------PTAQSDTR 963 (1120)
Q Consensus 899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~------------~~~~~i~~ 963 (1120)
.+...+.+|...|..++|.|-++++++-+.|...+++.+.........- +....++. ....-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999977777765532211110 00000000 00012367
Q ss_pred EEEccCCcEEEEE-----eCCe-----EEEEEcCCce-eeeccccCCCCCCeeEEEECC------------------CCc
Q 001224 964 VQFHQDQIHFLVV-----HETQ-----LAIFETTKLE-CVKQWVPRESSAPITHATFSC------------------DSQ 1014 (1120)
Q Consensus 964 ~~fspdg~~la~~-----~d~~-----v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~------------------dg~ 1014 (1120)
++|+|||.+|++. ..+. .++|+-...+ ....+ ..-..+...+.|+| -+-
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 8999999999982 2233 3455433211 11111 12244555555554 122
Q ss_pred EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1015 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1015 ~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.+|.++ -..|+|||.++.++++.+...++.+ +. .++|++ ||..|+..|.||-..+-.+...|
T Consensus 314 vfaiAt-~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 314 VFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEEee-cceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 345554 5689999999999998877444444 44 899999 79999999999988877776655
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2e-17 Score=158.01 Aligned_cols=307 Identities=14% Similarity=0.202 Sum_probs=195.5
Q ss_pred eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee-CCCCceeEEEEcCCCCeEEecccccceeE
Q 001224 507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGV 585 (1120)
Q Consensus 507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~i~~ 585 (1120)
+...+++|.+.|++++|..+ .+|++|..-|.|++|++.+......+. .+...++.+...|++.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------- 69 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------- 69 (323)
T ss_pred CeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-------------
Confidence 45667789999999998433 469999999999999999988877777 4566777777777654
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC-cEEEEEccCcchhhhhcc
Q 001224 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFE 664 (1120)
Q Consensus 586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 664 (1120)
+.+-+.|+.+.+|++..+..+..-. ..++++.|.+.. +...+... ..-.++-+.... .+...
T Consensus 70 ---------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D 132 (323)
T KOG0322|consen 70 ---------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQD 132 (323)
T ss_pred ---------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhc
Confidence 8899999999999998765443322 123334443311 11111000 001111110000 00000
Q ss_pred cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCc
Q 001224 665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 744 (1120)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 744 (1120)
+. ..-.+++-+
T Consensus 133 ~g-------------------------------------------------------------~~tqv~i~d-------- 143 (323)
T KOG0322|consen 133 GG-------------------------------------------------------------DTTQVQIAD-------- 143 (323)
T ss_pred cC-------------------------------------------------------------ccceeEccC--------
Confidence 00 000000000
Q ss_pred cceeeccCCccccccEEEEEEcC-CCc--eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224 745 QCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 821 (1120)
Q Consensus 745 ~~~~~~~~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 821 (1120)
-+..+..+.+.+..+.. +++ .++++.++|.+.+||+..++. +.+......+.... .
T Consensus 144 ------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~~~~~~kv~~~~--a 202 (323)
T KOG0322|consen 144 ------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQLPQSSKVESPN--A 202 (323)
T ss_pred ------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce-------------eeccccccccccch--h
Confidence 00011223333333221 222 356677789999999865421 11111111111111 2
Q ss_pred CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC--Cce--eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
.|..+|.++.+.+.-..=++|+ +..+..|++.. +.+ ..........|..+.+-| |++++|+++.|+.||||+.+
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEec
Confidence 3889999999987665666666 67788888763 222 122233355688999999 99999999999999999999
Q ss_pred cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
+...+..++.|++.|++++|+||...+|.++.|++|-+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999986
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.6e-16 Score=154.98 Aligned_cols=385 Identities=14% Similarity=0.169 Sum_probs=239.6
Q ss_pred EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224 431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510 (1120)
Q Consensus 431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 510 (1120)
-.+|||+|+|+|+++.- .+.|-|.++-+..+ +--.-+.|..+.|..|.-+ .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999865 78888888755333 2122467889999998875 566778889999999999998888
Q ss_pred eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc------------
Q 001224 511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF------------ 578 (1120)
Q Consensus 511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~------------ 578 (1120)
+.....++.+++|+|++. +.|.+...|-.|.+|.+.+.... -+..+...+..++|.|||+......
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 988888999999966542 56667777999999999875443 3344455678999999998332111
Q ss_pred ------------cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224 579 ------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 579 ------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
..-..+.+.|+|||+.|++ ||---.-.+..+. .+ -.+..++|+|.+++|++|+.|+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe--~~-lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE--RG-LGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee--ec-cceeEEEeccccceEEeeccch
Confidence 1123456889999887775 4422111111221 11 1477899999999999999999
Q ss_pred cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224 647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 726 (1120)
Q Consensus 647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 726 (1120)
.+|+.+--+- +.+..+-.. . +
T Consensus 233 ~lrvlnh~tW-k~f~eflhl-~---------------------------------------------------------s 253 (447)
T KOG4497|consen 233 MLRVLNHFTW-KPFGEFLHL-C---------------------------------------------------------S 253 (447)
T ss_pred hhhhhceeee-eehhhhccc-h---------------------------------------------------------h
Confidence 9998765433 112111100 0 0
Q ss_pred cCCCc-ceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCcee
Q 001224 727 ESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 805 (1120)
Q Consensus 727 ~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 805 (1120)
-.|.+ ..++. +. ... -.-...++.|.|..- ...+|......+.... ....+..
T Consensus 254 ~~dp~~~~~~k-e~---------~~~----~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~---~pv~~~~ 307 (447)
T KOG4497|consen 254 YHDPTLHLLEK-ET---------FSI----VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQM---TPVKVHK 307 (447)
T ss_pred ccCchhhhhhh-hh---------cch----hhhcccccccCCCcc---------ccCccccchhhhhhhh---cceeeec
Confidence 00000 00000 00 000 001112333443321 0011111000000000 0000000
Q ss_pred ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeC---CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEE
Q 001224 806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 882 (1120)
Q Consensus 806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 882 (1120)
..+.+. .+ +..-.+.-++|++|..++++-.| +.+.+||+...+....+. ...+|.+..|+| +...|+
T Consensus 308 lkp~tD------~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~ 377 (447)
T KOG4497|consen 308 LKPPTD------FP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLV 377 (447)
T ss_pred ccCCCC------CC--CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEE
Confidence 000011 11 13455778999999999999886 569999998766554443 566899999999 777777
Q ss_pred EEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCC
Q 001224 883 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 931 (1120)
Q Consensus 883 sg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 931 (1120)
.+.....+++|......++.. .+..-.|..+.|..+|..++-.+.|.-
T Consensus 378 vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 378 VCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 777777899998765444433 333467999999999999999998874
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=5.4e-17 Score=159.54 Aligned_cols=273 Identities=16% Similarity=0.270 Sum_probs=187.8
Q ss_pred eEEEEEcCCCCceEEEEecCCCcEEEEECCCC-------ce-----eEEee-ccccCeEEEeec-----cCCCceEEEEE
Q 001224 474 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPH-----HKENIQFIFST 535 (1120)
Q Consensus 474 V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-------~~-----~~~~~-~h~~~v~~~~~~-----~~~~~~~l~s~ 535 (1120)
...+.|+|||. .|++-+.|..+++|++... .. ..+++ .....|...||. ..++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45679999999 7999999999999998521 11 11111 123456666764 23455688999
Q ss_pred ecCCeEEEEecCCCCCceeeeCCCC-----ceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC-
Q 001224 536 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 609 (1120)
Q Consensus 536 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~- 609 (1120)
+.+.-|++||.-+++....+..-.. ...+++|+|||. +|++| ....|+++|+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------qlfaG-ykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------QLFAG-YKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---------------------eEeec-ccceEEEeecc
Confidence 9999999999999887766654321 334556666665 55554 4678999999
Q ss_pred CCCceeEEEe--c---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCccc
Q 001224 610 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 683 (1120)
Q Consensus 610 ~~~~~~~~~~--~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1120)
+.|+.-..+. . .+....+.+++|+| +.+.+++|+....+-|+.-... .++..
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l--------------------- 245 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL--------------------- 245 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee---------------------
Confidence 5554322221 1 12234577899999 5668888888777666643222 00000
Q ss_pred chhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEE
Q 001224 684 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 763 (1120)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l 763 (1120)
T Consensus 246 -------------------------------------------------------------------------------- 245 (406)
T KOG2919|consen 246 -------------------------------------------------------------------------------- 245 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe
Q 001224 764 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 843 (1120)
Q Consensus 764 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s 843 (1120)
+ .+|.+.|+.+.|.+||+.|.+|+
T Consensus 246 ------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 246 ------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ------------------------------------------------------e--cccCCCeeeEEeccCcCeecccc
Confidence 0 12677777888888888888877
Q ss_pred --CCcEEEEEcCC-CceeeeecCCCC-CeEE--EEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEE
Q 001224 844 --GGKISLFNMMT-FKTMATFMPPPP-AATF--LAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 916 (1120)
Q Consensus 844 --dg~i~vwd~~~-~~~~~~~~~~~~-~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~ 916 (1120)
+..|-.||++. ...+..+..|.. .=.. ....| ++++||+|+.||.|++||+.+ +..+..+..|+..|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 67788888864 344555555544 2223 34457 889999999999999999998 7778888889999999999
Q ss_pred ccCCCEEEEEeCC
Q 001224 917 SHALNVLVSSGAD 929 (1120)
Q Consensus 917 s~d~~~l~s~s~D 929 (1120)
+|--..+|+++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888887754
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=3.2e-17 Score=165.37 Aligned_cols=216 Identities=15% Similarity=0.277 Sum_probs=166.0
Q ss_pred cccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCcee----eeeeeecccccCeEEEEEcCCCCceEEEEecC
Q 001224 419 AALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493 (1120)
Q Consensus 419 ~~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~ 493 (1120)
.-+..||+++|..++|+| +...||+||.|.+|.||.+..+... .....|.||...|.-|+|.|.... +|++++.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~ 152 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGS 152 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccC
Confidence 335889999999999999 8889999999999999998755432 345679999999999999999887 8999999
Q ss_pred CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCC-ceeEEEEcCCCC
Q 001224 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGT 572 (1120)
Q Consensus 494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 572 (1120)
|.+|.+||+.+|+.+.++. |...|.+++|+ .||.+|++.+.|+.||+||.++++....-..|.+ ......|-.+|
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g- 228 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG- 228 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC-
Confidence 9999999999999999988 99999999985 5668999999999999999998877665544433 23333444444
Q ss_pred eEEecccccceeEEEEcCCCCEEEEEe----CCCeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEE-EEC
Q 001224 573 RTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAV-STN 644 (1120)
Q Consensus 573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~ 644 (1120)
. +++.+ .+..+-+||..+-+. ...+... ..|.---|.+|...+.. |-.
T Consensus 229 --------------------~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 229 --------------------K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred --------------------c-eeeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecC
Confidence 3 44432 578899998765443 3333322 34555567888777654 556
Q ss_pred CCcEEEEEccCcchhhhhc
Q 001224 645 DNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 645 dg~i~iwd~~~~~~~~~~~ 663 (1120)
|+.||.|.+.+....+..+
T Consensus 285 D~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 285 DSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred CcceEEEEecCCCceeEEe
Confidence 9999999998774334433
No 175
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.7e-16 Score=168.97 Aligned_cols=575 Identities=14% Similarity=0.157 Sum_probs=318.9
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-----
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 437 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----- 437 (1120)
|...-.++.|+|.| |+|.|+. ..|.|-|..+-+.+. .+..|...|+.+.|+|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 33446788999999 7888875 578888988877765 36678999999999872
Q ss_pred -C------CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC---CCceEEEEecCCCcEEEEECCCCce
Q 001224 438 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGDDKTIKVWDATNGAK 507 (1120)
Q Consensus 438 -g------~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~s~d~~i~vwd~~~~~~ 507 (1120)
+ -+||++...|.|.+||...+..+. .+..|.++|..++|-+. .+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999887554 57789999999998653 333 566666678999999999999
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC-------eEEec--c
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--F 578 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~~~~~--~ 578 (1120)
............++.+.|-...++.+.++ .|.+.+-+.-..... ......+.+..+-. ....| +
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEcc-CceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 98887666667777776655544445444 566655543321110 00001111111100 00000 0
Q ss_pred ccc--------ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC--CEEEEEECCCcE
Q 001224 579 RKR--------SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 648 (1120)
Q Consensus 579 ~~~--------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 648 (1120)
+.. ....++|+|.-+.++-..-...+.++|++-..++.....+.+ .+.-+.+-|++ ..|++.-.||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 000 011256677666666666678899999999888888876655 34446676654 579999999999
Q ss_pred EEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccC
Q 001224 649 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 728 (1120)
Q Consensus 649 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 728 (1120)
.+|-.+......+.-..+-.
T Consensus 299 tirvrk~~~~~f~~~~~~l~------------------------------------------------------------ 318 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNASLS------------------------------------------------------------ 318 (1062)
T ss_pred EEEEeeccCccccccchhhc------------------------------------------------------------
Confidence 99975543111111100000
Q ss_pred CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeec
Q 001224 729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 807 (1120)
Q Consensus 729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 807 (1120)
+|+.. ++..+. .-.+..+......|. ...++..-++|...+|.+..+....++......-..-+|
T Consensus 319 ------~dl~~-----Q~~~vr---~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 319 ------MDLGE-----QVHVVR---PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ------ccccc-----ceEEEe---echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 00000 000000 001111112222222 223334444555556655433222211110000000000
Q ss_pred CCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc--EEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224 808 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 885 (1120)
Q Consensus 808 ~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 885 (1120)
...... .-....-+.+|.||. -+.|. +++--+.......... .+... ...-| ++|.|+
T Consensus 385 f~~~~~---------~v~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t~~~~~p--~~n~~-~~~~p----LvAvGT 444 (1062)
T KOG1912|consen 385 FNLSTK---------LVGKTSLISLSDDGS----HSSGSTCVRMRPMPELTKVENDP--GGNTP-AGTVP----LVAVGT 444 (1062)
T ss_pred ccCcee---------ehhhccccchhhcCC----CCCCceeeecccCcccceeecCC--CCCcc-ceeee----eEEeec
Confidence 000000 000000011111110 00011 0110111111111111 11111 11123 889999
Q ss_pred CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE---------EEeCCCCEEEEECCCcccccceeeeccCCCCC
Q 001224 886 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV---------SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 956 (1120)
Q Consensus 886 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~---------s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 956 (1120)
+.|+|.++|+.++...+.+..|.+.|.++.|--...++- +++.-+.+.|-|+.+|.....+-++..
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~----- 519 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP----- 519 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC-----
Confidence 999999999999999999999999999999975544332 222234577889998765433322322
Q ss_pred CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCC-eeEEEEC-CCC----------------cEEE
Q 001224 957 TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS-CDS----------------QLVY 1017 (1120)
Q Consensus 957 ~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~-v~~l~~s-~dg----------------~~l~ 1017 (1120)
...+|+.+..|.-|+||++. .+.-+.+||+++..+++.... .-+ |+.+.|+ |.- +..+
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv 596 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV 596 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence 23689999999999999996 888999999988877665432 334 8888888 321 1233
Q ss_pred EEEcCCcEEEEEcCCcceeeeeCCCcccCCCCC------CCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1018 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVS------SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1018 s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~------~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
..+ +..+++.+...... ..+|.+ ........++|- +..|+.|..+|.+.+||+....
T Consensus 597 ~ds--~es~~~~~~~~a~~--------~sdgsq~~~a~esfafal~~mAwk---~d~lv~GD~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 597 LDS--VESRIYHITLSALV--------VSDGSQVNTAWESFAFALCAMAWK---DDILVVGDVEGNLVVWDLGRRQ 659 (1062)
T ss_pred ecc--ccchheehhhhhhh--------hccccchhhHHHHHHHHHHhhhcc---CCeeEeecccCceeEEeccccc
Confidence 332 22233332211111 011100 000112246664 5799999999999999975543
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=7.9e-17 Score=162.59 Aligned_cols=244 Identities=14% Similarity=0.194 Sum_probs=175.2
Q ss_pred CCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 353 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 353 ~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
++......-+|+++|..++|+|-....||+|+.|.+|.||++..+...... .-+...|.||...|--+
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V 137 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLV 137 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEE
Confidence 344444456799999999999988888999999999999999766544321 11223589999999999
Q ss_pred EEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224 433 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 511 (1120)
Q Consensus 433 ~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 511 (1120)
+|+| -.+.|++++.|.+|.|||+.+|+.+. ++. |.+.|+++.|+.||. +++|.+.|+.|||||.++++.+..-
T Consensus 138 ~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 138 QWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred eecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeec
Confidence 9999 56789999999999999999998665 465 999999999999999 7999999999999999999999988
Q ss_pred eccccCeEE-EeeccCCCceEEEEEe---cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 512 EGHEAPVYS-VCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 512 ~~h~~~v~~-~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
.+|.+.-.. +.| -.+|.++.+|- .+..+-+||..+.+....+..- .+...+..-.
T Consensus 212 ~~heG~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PF 270 (472)
T KOG0303|consen 212 VAHEGAKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPF 270 (472)
T ss_pred ccccCCCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEee
Confidence 888764322 223 24555444443 3678999998765543221110 0011223334
Q ss_pred EcCCCCEEEE-EeCCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcCC
Q 001224 588 FDTTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD 635 (1120)
Q Consensus 588 ~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~ 635 (1120)
++++.+.+.. |-.|+.|+-|.+....+ +.-+.......+-..+.|-|.
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 5566566655 55799999999976653 333332233334456777764
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-15 Score=144.05 Aligned_cols=288 Identities=11% Similarity=0.126 Sum_probs=196.9
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
.|.+-+++|.+++++++..+|.|.+..+..-..... ...|+...... .+|+.++..++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 455567899999999999999999998854211100 11222222112 3499999999997 458
Q ss_pred EEEEeCCcEEEEEcCCCce------eee--ec-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224 839 VMSASGGKISLFNMMTFKT------MAT--FM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 839 l~~~sdg~i~vwd~~~~~~------~~~--~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 905 (1120)
|++++||.|+-|....... +.. .+ ..-..|++|-..|..+.+|.+ +.|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEc
Confidence 8899999999998754322 101 11 123569999999955555554 479999999999999999999
Q ss_pred ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC--CCCcEEEEccCCcEEEEEeCCeEEE
Q 001224 906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLAI 983 (1120)
Q Consensus 906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~fspdg~~la~~~d~~v~i 983 (1120)
||++.|.++.--.....+.||+.||++||||.++++... .+.......-.. ..-.-.+..-+..++++|....+.+
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lsl 231 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSL 231 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEeccCceEEecCCCceeE
Confidence 999999999986666788999999999999999976532 221111110000 0111245556777999998899999
Q ss_pred EEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecC
Q 001224 984 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1063 (1120)
Q Consensus 984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p 1063 (1120)
|.++..++...+.. ..++..+.|- .+.++++++...|.-|.+. |.+...++ .++ ..-+..+..-+|
T Consensus 232 whLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s--~~c~s~s~~~~p 297 (325)
T KOG0649|consen 232 WHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES--TACYSASWQTSP 297 (325)
T ss_pred EeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc--cceeeecccCCc
Confidence 99999999988876 4578888884 5578888888899999875 34443333 221 112212233334
Q ss_pred CCCCEEEEEeCCCcEEEEe
Q 001224 1064 QEPNEFALGLSDGGVHVFE 1082 (1120)
Q Consensus 1064 ~d~~~l~s~~~Dg~v~vW~ 1082 (1120)
-++|-.++-.+.+.|+.
T Consensus 298 --~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 --IKFISIAGFSNKLHILK 314 (325)
T ss_pred --eEEEEecccceeeeeee
Confidence 45666677777777654
No 178
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2e-16 Score=155.72 Aligned_cols=345 Identities=13% Similarity=0.180 Sum_probs=235.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCcchhhhhc
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
..+|+|+|+++++++.- .+.|-|..+-+..+.+..- ..|.-+.|..|..+++++ ..++.|.+|++... +-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe
Confidence 35678888899998876 7888888777655444322 246678898887776655 56789999998654 111111
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224 664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 743 (1120)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 743 (1120)
T Consensus 88 -------------------------------------------------------------------------------- 87 (447)
T KOG4497|consen 88 -------------------------------------------------------------------------------- 87 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeccCCccccccEEEEEEcCCCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224 744 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 822 (1120)
Q Consensus 744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 822 (1120)
......+.++.|||||+.++..++ +-.|.||.+.+. .+..+..
T Consensus 88 ----------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--------------------~~~~~~~------ 131 (447)
T KOG4497|consen 88 ----------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--------------------KGYLLPH------ 131 (447)
T ss_pred ----------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--------------------eeEEecc------
Confidence 113456788999999987766665 788888987432 2222221
Q ss_pred CCCCccEEEEccCCCEEEEEe--C--CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR 896 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s--d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~ 896 (1120)
....+..++|+|||++.+..+ | .-+.+...+....++.+....-..+.+.|+| ||..||+-.. +-.|+.|.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe-- 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE-- 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence 344568899999999999887 4 2255555556667777777777789999999 8887775322 11222222
Q ss_pred cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc--------------------------------
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------------------------- 944 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-------------------------------- 944 (1120)
-.-.+..++|+|.+++|+.|+.|+.+||-+--+.+...
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 12347788999999999999999999876643322111
Q ss_pred --------------------------ceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeC---CeEEEEEcCCceeeecc
Q 001224 945 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW 995 (1120)
Q Consensus 945 --------------------------~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d---~~v~i~d~~~~~~~~~~ 995 (1120)
...++..........++..++|++|..++++-.| +.+.+||+...+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0001111122222356788999999999999655 57999999988776655
Q ss_pred ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC
Q 001224 996 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1075 (1120)
Q Consensus 996 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D 1075 (1120)
. ...+|....|.|....|+.+.....+++|.......++.-. .+-+|. .+.|.- +|..++..+.|
T Consensus 359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~---------~GF~i~--~l~W~~-~g~~i~l~~kD 423 (447)
T KOG4497|consen 359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK---------KGFNIQ--KLQWLQ-PGEFIVLCGKD 423 (447)
T ss_pred h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC---------CCceee--eEEecC-CCcEEEEEcCC
Confidence 4 26789999999999888888777889999988755554322 122244 899997 58889988888
Q ss_pred CcE
Q 001224 1076 GGV 1078 (1120)
Q Consensus 1076 g~v 1078 (1120)
.--
T Consensus 424 afc 426 (447)
T KOG4497|consen 424 AFC 426 (447)
T ss_pred ceE
Confidence 643
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.6e-15 Score=168.67 Aligned_cols=279 Identities=10% Similarity=0.119 Sum_probs=178.8
Q ss_pred eeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEec-cCceEEEeeecccccCCCCcccccc
Q 001224 723 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASV 801 (1120)
Q Consensus 723 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~ 801 (1120)
.++...++.|.+|++...........+. .......++++|+++.|++++ .++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 4455678999999996432222223322 234567889999999887765 468888888731
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCC-Cc---eeeeecCCCCCeEEEEEec
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 875 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~sp 875 (1120)
+|.+..... .........++++|+++++++++ ++.|.+|++.+ +. .+..+. +.....+++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223456899999999999887 78999999974 22 222222 234467789999
Q ss_pred CCCcEE-EEEeCCCcEEEEEeecceeeE-------eecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCc--cccc
Q 001224 876 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK 944 (1120)
Q Consensus 876 ~d~~~l-asg~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~--~~~~ 944 (1120)
+++++ ++...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++.. +...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 77666 455567999999997633221 1111 234568999999999988776 899999999842 2211
Q ss_pred ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----eeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224 945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus 945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
...+...............+.|+|+|++++++ .++.|.+|++.... .+..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11121111111111223468999999999996 46799999986543 2222221 234567899999999998
Q ss_pred EEc-CCcEEEEEcC--Ccce
Q 001224 1019 CFL-DATVCVFSAA--NLKL 1035 (1120)
Q Consensus 1019 ~~~-Dg~v~iwd~~--~~~~ 1035 (1120)
++. +++|.||+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 876 8999999874 4444
No 180
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-15 Score=165.10 Aligned_cols=604 Identities=12% Similarity=0.099 Sum_probs=339.4
Q ss_pred CCCCCCCcceeeecc-CCCCceEEEEecC-----------CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCc
Q 001224 348 STPEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 415 (1120)
Q Consensus 348 ~~~~~~~~~~~~~~~-h~~~v~~v~~spd-----------g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 415 (1120)
...|...-+.+..+. |+..|+.|.|.|- ...+||++...|.|.|||...+..+.
T Consensus 38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------------- 103 (1062)
T KOG1912|consen 38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------------- 103 (1062)
T ss_pred EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--------------
Confidence 344545555566666 8999999999873 34578999999999999999877655
Q ss_pred ccccccccCCCCceEEEEEcC---CC-CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEe
Q 001224 416 PLQAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 491 (1120)
Q Consensus 416 ~~~~~~l~~h~~~V~~l~~sp---dg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~ 491 (1120)
-+..|..+|..++|-+ +. ..|+.-....++.+|+..+|+.+. ....-.....|+.+.|-+.+.+.+.+
T Consensus 104 -----~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 104 -----WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred -----hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEEc
Confidence 2677889999999977 44 466777778899999999998665 33334456777888886665344444
Q ss_pred cCCCcEEEEECC-C------CceeEEeecccc----------------C------e-EE--EeeccCCCceEEEEEecCC
Q 001224 492 GDDKTIKVWDAT-N------GAKQYIFEGHEA----------------P------V-YS--VCPHHKENIQFIFSTALDG 539 (1120)
Q Consensus 492 s~d~~i~vwd~~-~------~~~~~~~~~h~~----------------~------v-~~--~~~~~~~~~~~l~s~~~dg 539 (1120)
+ .|.+-+-+.- . |+..+.-..|.. . | .+ ++|++.-. .++......
T Consensus 176 s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r--n~lfi~~pr 252 (1062)
T KOG1912|consen 176 S-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR--NILFITFPR 252 (1062)
T ss_pred c-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh--ceEEEEecc
Confidence 4 4555444432 1 222222222222 0 0 11 22333332 233334467
Q ss_pred eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 001224 540 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-------- 611 (1120)
Q Consensus 540 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 611 (1120)
.+.++|++-..+......+.+.+.-+.+-|++++ ..|++.-.||.+.+|-.+.
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~ 313 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKP 313 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCcccccc
Confidence 7889999887777777777777777777777763 4688888999999997654
Q ss_pred --------CceeEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccc---------c
Q 001224 612 --------VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR---------T 673 (1120)
Q Consensus 612 --------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------~ 673 (1120)
+.....+..-.... +...+..|. ...++.--.+|.+.+|.+.++........+....... .
T Consensus 314 ~~~l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v 392 (1062)
T KOG1912|consen 314 NASLSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV 392 (1062)
T ss_pred chhhccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh
Confidence 22222221111111 122333343 4455555667888899888662211111100000000 0
Q ss_pred CCCCCCCcccchhhhHhhhhccc-cccccccccc--c-CCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceee
Q 001224 674 SENSKPTISPISAAAAAAATSAG-LADRAASMVS--I-PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749 (1120)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 749 (1120)
.....+.++.++ .-+.| .+.+..|... . ....+......-...++.|...|+|.++|+.+.......
T Consensus 393 ~k~~l~~LS~dg------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f--- 463 (1062)
T KOG1912|consen 393 GKTSLISLSDDG------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF--- 463 (1062)
T ss_pred hhccccchhhcC------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh---
Confidence 000000111111 00111 1111111111 1 111111111112256779999999999999876544433
Q ss_pred ccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 750 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 750 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
..|...|.++.|....+.+-.+.+. .. +..-.....+.+-|..+|.-....-.......+|+.
T Consensus 464 ----svht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 464 ----SVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred ----cccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 2488999999998887744333321 00 000001112345667777644433222346789999
Q ss_pred EEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEe-cCCC----------------cEEEEEeCCCcEE
Q 001224 830 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQ 891 (1120)
Q Consensus 830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~lasg~~dg~v~ 891 (1120)
+..|.-++|++..- +.-+.+||+++..+++.....-.-|+.+.|+ | .- +..+..+ +..+
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~ 603 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESR 603 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccch
Confidence 99999999999998 8889999998877776655444458999998 3 21 1233322 2233
Q ss_pred EEEeec-------cee-eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcE
Q 001224 892 IYNVRV-------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 963 (1120)
Q Consensus 892 vwd~~~-------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 963 (1120)
++.+.. +.. ....+...-.+..|+| .+..|+.|+.+|.+++||+.....+. ....+ .+ ......
T Consensus 604 ~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p-~~---ra~~l~ 675 (1062)
T KOG1912|consen 604 IYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSP-DP---RAHSLT 675 (1062)
T ss_pred heehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCC-Cc---hhhhee
Confidence 333321 111 0111111223344666 46789999999999999976532211 00011 11 012233
Q ss_pred EEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224 964 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 964 ~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
..+-|....+++-....+-+||.+....+..+......-.+..+.+......++ ..|.++|+-.+.....
T Consensus 676 ~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 676 FPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP 745 (1062)
T ss_pred cccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence 444554444555566678899998888777663222244455556544444443 2344777766655443
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=7.5e-17 Score=154.20 Aligned_cols=308 Identities=11% Similarity=0.159 Sum_probs=198.4
Q ss_pred eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeE
Q 001224 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI 541 (1120)
Q Consensus 463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 541 (1120)
+.+.|++|.+.|+++.|-.++. |.+|..-|.|++|++++.+.+..++ .|...|+.+...+. ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence 4557889999999999988886 8999999999999999999888888 56778888775432 478999999999
Q ss_pred EEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeEEEec
Q 001224 542 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 542 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 620 (1120)
.+|++.....+. .|.-.+.++.|.+-.- +.+.... ...++.-++.. .+.+-|......+...+.
T Consensus 80 ~lw~ia~s~~i~---i~Si~~nslgFCrfSl-----~~~~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFIS---IHSIVVNSLGFCRFSL-----VKKPKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEE---Eeeeecccccccccee-----ccCCCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence 999987633222 1222233333332110 0000000 01111111100 022222222112221111
Q ss_pred --CCCCCCcCeEEEcC-CC--CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224 621 --DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 695 (1120)
Q Consensus 621 --~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1120)
....+.+.|..+.. ++ -++++|.++|.+.+||+.++...+ .+...
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~----------------------------- 194 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQS----------------------------- 194 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-ccccc-----------------------------
Confidence 11122344444322 22 356778889999999998872221 11110
Q ss_pred ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEe
Q 001224 696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 775 (1120)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 775 (1120)
|.+ ..+...|.+++.++.|.+.-..=+.+
T Consensus 195 ---------------------------------------~kv------------~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 195 ---------------------------------------SKV------------ESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ---------------------------------------ccc------------ccchhhccCcceeeeechhhcCCcCC
Confidence 000 01113378889999988766666777
Q ss_pred ccCceEEEeeecccccCCCCccccccCceeecCCCCCcc-cccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcC
Q 001224 776 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 853 (1120)
Q Consensus 776 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~ 853 (1120)
+.+..+..|+++.. +|.+. ..+..- ..-.|..+.+-||++.+|+++ |+.||||+.+
T Consensus 224 ga~dkl~~~Sl~~s--------------------~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 224 GADDKLVMYSLNHS--------------------TGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred Cccccceeeeeccc--------------------cCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 77778888887432 11110 000111 234577889999999999999 9999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224 854 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 895 (1120)
Q Consensus 854 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 895 (1120)
+.+.+..++-|...|++++|+| +..++|.++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999 8899999999999999986
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.5e-16 Score=155.66 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=126.6
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC------CceeEEee-ccccCeEEEeeccCCCceEEEEEecC
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD 538 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d 538 (1120)
.+.+|.+.|+++.|+.+++ +|++|++|..+++|++.. .+++.... .|...|.|++|.. ...++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCc
Confidence 5778999999999999988 899999999999999863 35555443 3558899999854 33799999999
Q ss_pred CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEE
Q 001224 539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 617 (1120)
Q Consensus 539 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 617 (1120)
++|..-|+.+.+.+..+..... .+.+..+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~-------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNN-------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccCc-------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 9999999998766554432211 1244455566666789999999999999998655 2222
Q ss_pred EecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcch
Q 001224 618 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 618 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
+-.........++.|+| ...+|++.+..+.+-+||.+....
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 22122223567899999 556788888889999999876533
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.4e-17 Score=169.77 Aligned_cols=322 Identities=16% Similarity=0.204 Sum_probs=234.1
Q ss_pred eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
..|.+|.+.|+.|.|+..|. .+++|++|..|.+||+..++....+ .||...|....|.|..+...+++++.||.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 35889999999999999999 7999999999999999999887766 57988888888888888889999999999998
Q ss_pred EecCCCCC---ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224 544 WLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 544 wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
=.+...+. ...+..|.+.|..++.-|+.. ..|.+++.|+.+.-+|++.+.....+..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeee
Confidence 76654433 234566777888888877776 4689999999999999988765544432
Q ss_pred CCC-C---CCcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224 621 DGG-L---PASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 695 (1120)
Q Consensus 621 ~~~-~---~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1120)
... . ....+++..|. ...+++|+.|..+++||.+.-.+. ...+ .+. .|.|..
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h---------- 330 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH---------- 330 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc----------
Confidence 111 1 24678889994 458999999999999987543111 0000 000 111110
Q ss_pred ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEe
Q 001224 696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 775 (1120)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 775 (1120)
++ ......|++++|+.++.-++++
T Consensus 331 ---------------------------l~-----------------------------~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 331 ---------------------------LV-----------------------------EDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ---------------------------cc-----------------------------ccCcccceeEEecCCccceeee
Confidence 00 0134678999999999889999
Q ss_pred ccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE-ccCCCEEEEEeC-CcEEEEEcC
Q 001224 776 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMM 853 (1120)
Q Consensus 776 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~-s~d~~~l~~~sd-g~i~vwd~~ 853 (1120)
..|-.|+++.-..+.. .......++ ........++......|..+-| -|...|+++|+| |.|.||+-.
T Consensus 355 YnDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred ecccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 9998999885332211 110000000 0122222344334455777765 578899999997 899999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 854 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 854 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
+++.++.+.+...-|+|+.-+| --.+||+.+-|..|+||...+.
T Consensus 425 t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 425 TGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence 9999999988888899999999 6779999999999999987543
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.7e-17 Score=187.56 Aligned_cols=278 Identities=14% Similarity=0.197 Sum_probs=209.6
Q ss_pred cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCce----EEEeccCceEEEeeecccccCCCCccccccC
Q 001224 727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 802 (1120)
Q Consensus 727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 802 (1120)
+.+.++.+|.+.............. .....+-..++|.+.|.. |+.+..||.|.+|+......+....
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~------ 107 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE------ 107 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH------
Confidence 4556777777665433321111111 124567788999988776 7778889999999874320000000
Q ss_pred ceeecCCCCCcccccCCCCCCCCCccEEEEccCCC-EEEEEe-CCcEEEEEcCCCceeeeec--CCCCCeEEEEEecCCC
Q 001224 803 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 878 (1120)
Q Consensus 803 ~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~ 878 (1120)
.+ .....|.+.|..+.|++... ++|+|+ ||.|.|||+...+...++. .....|.+++|+....
T Consensus 108 ----------~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 108 ----------VL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred ----------HH---hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 11 11123999999999999876 899998 8999999998766555542 2456799999998788
Q ss_pred cEEEEEeCCCcEEEEEeecceeeEeeccccc--ceEEEEEccCC-CEEEEEeCCC---CEEEEECCCcccccceeeeccC
Q 001224 879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 952 (1120)
Q Consensus 879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~~~ 952 (1120)
.+||+++.+|.+.|||++..+.+-.+..|.+ .+..++|+|++ ..|++++.|. .|.+||++.- ...++...
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 9999999999999999999888888877665 46789999986 4566666554 5999998762 34677778
Q ss_pred CCCCCCCCCcEEEEccCC-cEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEEcCCcEEEEE
Q 001224 953 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1029 (1120)
Q Consensus 953 ~~~~~~~~i~~~~fspdg-~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~iwd 1029 (1120)
+|.. .|.++.|++.+ .+|++ |.|+.|.+|+.++++.+..+.. ....+..+.|.|..- .+++++-||.|.||.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 8875 89999999976 77777 6999999999999999998874 478999999999655 888999999999999
Q ss_pred cCCcc
Q 001224 1030 AANLK 1034 (1120)
Q Consensus 1030 ~~~~~ 1034 (1120)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87654
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=4.4e-16 Score=150.78 Aligned_cols=259 Identities=15% Similarity=0.241 Sum_probs=187.0
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCC-------cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVG-------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
++.|.+.|+.++-+|-.+.+|++...+. .+.||.+........ .........+-..+-+.|.|+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---------~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---------SSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---------cchhhHhhcCCHHHhCceeeE
Confidence 4457899999999999888899876632 467888754332210 000111111223556699999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeee---eecccccCeEEEEEcC--CCCceEEEEecCCCcEEEEECCCCce
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL---EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK 507 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~---~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~vwd~~~~~~ 507 (1120)
.|.|++..||+-. |..|.+|+++.+..+.... .-.+|....++-+|+| ||. .+++ ..|+++..||+++.++
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~t-t~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVAT-TSDSTLQFWDLRTMKK 205 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEE-eCCCcEEEEEccchhh
Confidence 9999999999876 7889999999876531111 1123566788899999 555 3444 4589999999999888
Q ss_pred eEEe-eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeE
Q 001224 508 QYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585 (1120)
Q Consensus 508 ~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~ 585 (1120)
...+ .+|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|..+|.++.|.|.-.
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd------------- 271 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD------------- 271 (370)
T ss_pred hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-------------
Confidence 7766 46888999999987654 689999999999999998754 5678889999999999988765
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------------eeEEEecCCCCCCcCeEEEcC-C
Q 001224 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-D 635 (1120)
Q Consensus 586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~ 635 (1120)
..+++++.|..|.+|...+-. .+.++. .+...|.+++||. |
T Consensus 272 -------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 272 -------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSAD 342 (370)
T ss_pred -------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCC
Confidence 467888888888888653211 112222 2345799999998 5
Q ss_pred CCEEEEEECCCcEEEEEcc
Q 001224 636 GCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 636 ~~~l~~~~~dg~i~iwd~~ 654 (1120)
.-.+|+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 5567778899999876553
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.5e-17 Score=171.18 Aligned_cols=229 Identities=16% Similarity=0.290 Sum_probs=179.8
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEcc-----CCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 495 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~ 495 (1120)
.+..|.+.|.+++|.|....|++++.||++.+|+++ ....+.++.++++|.++|.|+++.++++ .+.+|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3345678889999999999999999999 699999999
Q ss_pred cEEEEECCC------C----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--CCcee
Q 001224 496 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCT 563 (1120)
Q Consensus 496 ~i~vwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~ 563 (1120)
+|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+.....+ .++... .+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996542 1 2345778999999999998766 4799999999999998876554 222221 11222
Q ss_pred EEEEcCCC--------C---------------eEEe-----c-ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001224 564 TMAYSADG--------T---------------RTYQ-----G-FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 614 (1120)
Q Consensus 564 ~~~~s~~g--------~---------------~~~~-----~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 614 (1120)
++.+.... . .++. + .....+..+..+|.+...+++.+|+.|+++|..++..
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22221111 0 1111 0 0113456678889999999999999999999999999
Q ss_pred eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 615 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 615 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.....|. ..++++++.|+|.+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 98887664 47999999999999999999999999987654
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=7.9e-15 Score=163.14 Aligned_cols=251 Identities=11% Similarity=0.104 Sum_probs=164.7
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcC-CCce--eeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeec
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV 897 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~ 897 (1120)
......++++|++++|++++ ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34567899999999998775 6889999986 3332 22222 234567899999 777777665 488999999974
Q ss_pred -c---eeeEeecccccceEEEEEccCCCEEEE-EeCCCCEEEEECCCcccccc---eeeeccCCCCCCCCCCcEEEEccC
Q 001224 898 -D---EVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 898 -~---~~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~v~iWd~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~fspd 969 (1120)
+ +.+..+.+ .....+++++|+++++++ ...++.|.+||+++...... .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 2 22233332 234677899999998854 45569999999986322111 11122222 24578999999
Q ss_pred CcEEEEE--eCCeEEEEEcCC--c--eeeecccc--C--CCCCCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeee
Q 001224 970 QIHFLVV--HETQLAIFETTK--L--ECVKQWVP--R--ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCR 1038 (1120)
Q Consensus 970 g~~la~~--~d~~v~i~d~~~--~--~~~~~~~~--~--~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~ 1038 (1120)
|++++++ .++.|.+|++.. + +.+..+.. . .+......+.|+|||++|+++.. ++.|.+|++++......
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 478999999973 2 22332221 0 11223456899999999998864 68999999965432111
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC-CCcEEEEecCCCCCCC
Q 001224 1039 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKW 1090 (1120)
Q Consensus 1039 ~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~-Dg~v~vW~~~~~~~~~ 1090 (1120)
+. ...+.+ ..+..+.++| |+++|+++.. +++|.+|++....+.+
T Consensus 266 ~~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 266 FE--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred Ee--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 11 111111 2233689999 5888777665 8999999987544333
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=155.74 Aligned_cols=151 Identities=18% Similarity=0.265 Sum_probs=117.9
Q ss_pred EEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEE
Q 001224 487 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 566 (1120)
Q Consensus 487 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 566 (1120)
.++++-..|.|++||..+++.+..++++...+..+.|......+.+.+++.||+|++||++.......+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~--------- 112 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW--------- 112 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec---------
Confidence 58888889999999999999999999999999999987654557899999999999999998655433221
Q ss_pred EcCCCCeEEecccccceeEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcC-CCCEEE
Q 001224 567 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 640 (1120)
Q Consensus 567 ~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~ 640 (1120)
.++...+..+++....++.+++|. .+-.|.+||++..+. +..+. +.|...|+++.|+| +.++|+
T Consensus 113 ---------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 113 ---------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ---------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 112223455555555566677765 477899999998876 55443 45566899999999 778999
Q ss_pred EEECCCcEEEEEccCc
Q 001224 641 VSTNDNGIKILATSDG 656 (1120)
Q Consensus 641 ~~~~dg~i~iwd~~~~ 656 (1120)
+|+.||.|.+||+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998654
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.1e-16 Score=155.85 Aligned_cols=289 Identities=16% Similarity=0.192 Sum_probs=195.7
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC-CCceEEEEecCCCcEEEEECCCCceeEE--eeccc
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHE 515 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~ 515 (1120)
..+|++...|.|++||..+++.++ .+.+|...++.++|..+ +.. .+.+|+.||+|++||++....... +..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 568889999999999999988776 68899999999999875 333 799999999999999998665543 34454
Q ss_pred -cCeEEEeeccCCCceEEEEEec----CCeEEEEecCCCCC-ce-eeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224 516 -APVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGS-RV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 588 (1120)
Q Consensus 516 -~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~ 588 (1120)
.+..+++ ...+++.+++|.. +-.|.+||++.... +. -...|...|+.+.|.|...
T Consensus 117 ~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p---------------- 178 (376)
T KOG1188|consen 117 GTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP---------------- 178 (376)
T ss_pred CCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----------------
Confidence 3444444 3335567777753 56799999998766 32 3456778888888888766
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc----eeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhhc
Q 001224 589 DTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 589 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
+.|++||.||.|.++|+.... ++.++. +...|.++.|..++ +.+.+-+..++..+|+++.+... ..+
T Consensus 179 ----nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~-~~~ 250 (376)
T KOG1188|consen 179 ----NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE-TWL 250 (376)
T ss_pred ----CeEEeecccceEEeeecCCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh-hcc
Confidence 689999999999999997543 223332 22358889999877 45888889999999999988422 222
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccC-CCcceeeecccCCC
Q 001224 664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES-NDKSKVWKLTELSE 742 (1120)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~ 742 (1120)
..... .... .. ... ... +--+...--+....+.++. .++..++-+.....
T Consensus 251 ~~~~~-------------~~~d--~r----~~~---------~~d-Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s 301 (376)
T KOG1188|consen 251 ENPDV-------------SADD--LR----KED---------NCD-YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS 301 (376)
T ss_pred cCccc-------------hhhh--HH----hhh---------hhh-heeecccCCCcceEEEeccccCceeEEEeeeccc
Confidence 11100 0000 00 000 000 0000111112333444333 56666666664444
Q ss_pred CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224 743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 786 (1120)
Q Consensus 743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 786 (1120)
............+|..-|+++.|...+..+.++++||.+.+|..
T Consensus 302 ~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44444445555668888999999999999999999999999984
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=8.5e-16 Score=172.73 Aligned_cols=264 Identities=20% Similarity=0.264 Sum_probs=193.7
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
......+.-...|+|++|+|....++|.|..+|.|.+||+..+..... .........|..+|+.+.|
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEE
Confidence 344567778899999999999988999999999999999988765311 0111135679999999999
Q ss_pred cCCC--CeEEEEECCCeEEEEEccCCceeeeeeeec---------ccccCeEEEEEcCCCCceEEEEecCCCcEEEEE--
Q 001224 435 SPDG--SLFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-- 501 (1120)
Q Consensus 435 spdg--~~las~~~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd-- 501 (1120)
-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|.|..=+
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEecc
Confidence 7744 459999999999999877432211110111 11246899999998877 789999999987733
Q ss_pred -CCCCc-----eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC-CCCCceeeeCCCCceeEEEEcCCCCeE
Q 001224 502 -ATNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 502 -~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
...+. .+..+..|.++|.++.++|-.. ..+.+++ |.++++|... ...++..+..+...+++++|||...
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp-- 454 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP-- 454 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--
Confidence 22222 2335567889999999876554 3444444 9999999887 5666666666667788888888765
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
..++++..||.|.+||+..... +.+.... ....+.+.|+++|+.|++|...|.+.+|+
T Consensus 455 ------------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 455 ------------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred ------------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 4588889999999999975543 3333323 34567788999999999999999999999
Q ss_pred ccCc
Q 001224 653 TSDG 656 (1120)
Q Consensus 653 ~~~~ 656 (1120)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 8644
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=2.9e-17 Score=180.34 Aligned_cols=282 Identities=17% Similarity=0.240 Sum_probs=202.3
Q ss_pred eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEE
Q 001224 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544 (1120)
Q Consensus 465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 544 (1120)
..|.||...|+|+.|...|. ++++|++|..++||.++++.++.++.||.+.|+.++.+ .+..++++++.|..|++|
T Consensus 184 krLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs--~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS--SNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccc--hhhhhhhhcccCceEEEE
Confidence 46889999999999999999 79999999999999999999999999999999999874 344689999999999999
Q ss_pred ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---
Q 001224 545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--- 621 (1120)
Q Consensus 545 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 621 (1120)
.+..+.++..+.+|.+.|++++|+| ..+.+.||++++||.+- .........
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP-------------------------~~sss~dgt~~~wd~r~-~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSP-------------------------RASSSDDGTCRIWDARL-EPRIYVPRPLKF 313 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCc-------------------------cccCCCCCceEeccccc-cccccCCCCCCc
Confidence 9999999999999999999999888 34678899999999871 111110000
Q ss_pred CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224 622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 701 (1120)
Q Consensus 622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1120)
.....+.++.|-..+.-+++|+.|
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d-------------------------------------------------------- 337 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRD-------------------------------------------------------- 337 (1113)
T ss_pred ccccceeeeeccccccccccccCC--------------------------------------------------------
Confidence 000111222222222222222222
Q ss_pred ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224 702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 781 (1120)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 781 (1120)
+.-..|.+. .+++...+-.+++...
T Consensus 338 ----------------------------~ea~n~e~~-----------------------~l~~~~~~lif~t~ss---- 362 (1113)
T KOG0644|consen 338 ----------------------------GEARNHEFE-----------------------QLAWRSNLLIFVTRSS---- 362 (1113)
T ss_pred ----------------------------cccccchhh-----------------------HhhhhccceEEEeccc----
Confidence 222222211 0011111110111111
Q ss_pred EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC-CEEEEEe-CCcEEEEEcCCCceee
Q 001224 782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMA 859 (1120)
Q Consensus 782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~s-dg~i~vwd~~~~~~~~ 859 (1120)
|- .+.+++- +-.+.+|++.+|....
T Consensus 363 -----------------------------------------------------d~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 363 -----------------------------------------------------DLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred -----------------------------------------------------cccccceeeeeeeEeeeeecccchhhh
Confidence 11 2333333 6779999999999999
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
.+.+|...+..+.++|.+.++..+++.||...|||+-.|..++.. .+| ..+..-+||+||..++....-|.+.|....
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence 999999999999999988888889999999999999888666543 555 456677999999999988888888888765
Q ss_pred Ccc
Q 001224 939 GWE 941 (1120)
Q Consensus 939 ~~~ 941 (1120)
.++
T Consensus 469 qs~ 471 (1113)
T KOG0644|consen 469 QSK 471 (1113)
T ss_pred CCc
Confidence 543
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.2e-15 Score=172.04 Aligned_cols=305 Identities=17% Similarity=0.255 Sum_probs=211.1
Q ss_pred ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc---ccCeEEEeeccCCCceEEEEEecCCeEEEEecC
Q 001224 471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547 (1120)
Q Consensus 471 ~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 547 (1120)
...-..+.|+|-.. .++++.+.-.|+|||.+.++++..|..+ ...|+.+++-...|..++++|+.||.|++|+--
T Consensus 1064 ~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 34556678888888 5888887889999999999998888654 356888988777788899999999999999643
Q ss_pred CCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCC
Q 001224 548 NLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 626 (1120)
Q Consensus 548 ~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 626 (1120)
... ....+...-..+.++...+.|. . ..+.|.....+|+++|+-..|+|||......+..+..... ..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~---------~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~ 1210 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGT---------G-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TL 1210 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCC---------C-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-cc
Confidence 321 2222211111222222222222 2 5677777777888888899999999998888877765433 34
Q ss_pred cCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224 627 SPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 705 (1120)
Q Consensus 627 v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1120)
+++++-+- .|+.+++|..||.|++||.+.....
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------------------------------- 1244 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------------------------------- 1244 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCcc----------------------------------------------
Confidence 55555443 5799999999999999998654110
Q ss_pred ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc--EEEEEEcCCCce-EEEeccCceEE
Q 001224 706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--ISRLIFTNSGNA-ILALASNAIHL 782 (1120)
Q Consensus 706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~~g~~-l~~~~~dg~i~ 782 (1120)
.-+.+|. .|... |..+.+.+.|-. |++++.+|.|+
T Consensus 1245 ------------------------s~v~~~R------------------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1245 ------------------------SLVCVYR------------------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred ------------------------ccceeec------------------ccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 1122221 13333 778888776654 99999999999
Q ss_pred EeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec
Q 001224 783 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM 862 (1120)
Q Consensus 783 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~ 862 (1120)
+||+...... ....... .....+..+++.++++...+|+|+.+.|+||++.. +.+..++
T Consensus 1283 ~~DlR~~~~e-------------------~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k 1341 (1387)
T KOG1517|consen 1283 LLDLRMSSKE-------------------TFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIK 1341 (1387)
T ss_pred EEecccCccc-------------------ccceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh-hhhcccc
Confidence 9998542100 0000000 00012358999999999999999999999999864 3333332
Q ss_pred C-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 863 P-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 863 ~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
. ..+.+.|++|+| -.-++|+|+.|..|.||.....
T Consensus 1342 ~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 2 235689999999 8889999999999999987654
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.5e-16 Score=154.32 Aligned_cols=306 Identities=9% Similarity=0.050 Sum_probs=208.2
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc---eeeeeeee-cccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD---EVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKT 496 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~---~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~s~d~~ 496 (1120)
-+.+|.+.|+++.||.++++||+|+.|..+++|+++.-- ..+++... ..|...|.|++|...+. .+.+|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 477899999999999999999999999999999986321 11122122 23668999999998887 7999999999
Q ss_pred EEEEECCCCceeEEeec--cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce---eeeCCCCceeEEEEcCCC
Q 001224 497 IKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGRWCTTMAYSADG 571 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g 571 (1120)
|...|+++.+.+..+.. ..+.|..+..+|.. +.+++.+.+|.|.+||.+...... ..........++.|.|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999998887752 23589999988773 589999999999999998754221 112222333444444443
Q ss_pred CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEEec----CCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224 572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDA----DGGLPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
. .+|++.+..+-+.+||.+.... +....+ ......-.++.|+|+|..+.+--...
T Consensus 207 P--------------------~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 207 P--------------------ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred c--------------------eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 3 4567788889999999875431 111111 11111235789999999988776666
Q ss_pred cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224 647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 726 (1120)
Q Consensus 647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 726 (1120)
.-.+||+.+....+-.+......-. .++ ......+.+...+++|
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~--------N~~----------------------------T~KS~~F~~D~~v~tG 310 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYC--------NIK----------------------------TIKSMTFIDDYTVATG 310 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcce--------eee----------------------------eeeeeeeecceeeecc
Confidence 6677887665222322221110000 000 0111223345568899
Q ss_pred cCCCcceeeecccCCCCccceeecc----------------CCccccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224 727 ESNDKSKVWKLTELSEPNQCRSLRL----------------PENLRATKISRLIFTNSGNAILALASNAIHLLWKW 786 (1120)
Q Consensus 727 ~~d~~i~vw~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 786 (1120)
+.+=.|.+|.+...........+.- ...+|..-+..+.|+|...+|++.+-...+++|.-
T Consensus 311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 9999999999986554333221111 01568888999999999999999999999999964
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=7e-15 Score=148.11 Aligned_cols=241 Identities=14% Similarity=0.209 Sum_probs=181.1
Q ss_pred CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001224 824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 901 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 901 (1120)
...+..+.|..+...|..|+....++|+................|.-+-|+. .++|..+.+. .++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456677799999999999955678888876555333333344566777765 4666666544 5899998887777
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E--eC
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 978 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~--~d 978 (1120)
..+. ...+|.+|.+. .++|+.+=.+. |.|||+..-+ .+.......+-...+.++.+++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 6665 34678899886 45666665554 9999999843 34444333221234555666666779998 3 56
Q ss_pred CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc-EEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224 979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus 979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
|.|.+||+.+.+.+..+. .|.+.+.+++|++||.+||++++.|+ ||||.+.+|+.+..+..... + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999988877 89999999999999999999999987 89999999999998873222 2 3444
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1058 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1058 ~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+++|+| |+++|++.+..++|+||.+....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 68999999999999999998866
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=4.4e-17 Score=178.93 Aligned_cols=232 Identities=18% Similarity=0.283 Sum_probs=177.1
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
-+.||..+|+|+.|...|.++++|+.|..|+||..+++.++. ..+||.+.|+.++.+.+.. ++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 377999999999999999999999999999999999988776 7999999999999998877 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee---e-eCCCCceeEEEEcCCCCeEEe
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---Y-EAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~-~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
.+.++.++..+.||++.|++++|+|-. +.+.||++++||.+-...... . .....-+.++.|...+....+
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 999999999999999999999997643 678899999999982111111 0 111234455556555555554
Q ss_pred cccccc-----eeEEEEcCCC-----------CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEE
Q 001224 577 GFRKRS-----LGVVQFDTTK-----------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLL 639 (1120)
Q Consensus 577 ~~~~~~-----i~~~~~~~~~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 639 (1120)
+..+.. +.++++...+ .+.+++-.+-.+++|++.+|...+.+.++.+ .+..+.++| +.+..
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhh
Confidence 443321 1111222111 3445555677899999999999998887765 677799999 56667
Q ss_pred EEEECCCcEEEEEccCcchhhhhccc
Q 001224 640 AVSTNDNGIKILATSDGIRLLRTFEN 665 (1120)
Q Consensus 640 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 665 (1120)
.+++.||...|||+..+......+.+
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecc
Confidence 78899999999999888433333333
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4e-16 Score=165.31 Aligned_cols=277 Identities=18% Similarity=0.273 Sum_probs=182.3
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC--------CceeEEeeccccCeEEEeeccCCCceEEEEEec
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 537 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 537 (1120)
++..|.+.|+.++|.+-.. .|++++.||+|++|+++. -+++.+|.+|.++|.|+++ ..+++.+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeecc
Confidence 5778999999999999888 799999999999999932 2567899999999999997 456689999999
Q ss_pred CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 001224 538 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 617 (1120)
Q Consensus 538 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 617 (1120)
||+|+.|++....... ..+...+ ..-.+.||.+ .++.+++++....|++++.||+++.|+...... .+
T Consensus 365 Dg~I~~w~~p~n~dp~--ds~dp~v--------l~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPD--DSYDPSV--------LSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred CceeeeeccCCCCCcc--cccCcch--------hccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence 9999999776321111 0000000 0123444444 666777777777899999999999999876655 33
Q ss_pred EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001224 618 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 697 (1120)
Q Consensus 618 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1120)
+........-.++.+-... ++....+..+..+++.+. +..
T Consensus 433 f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~-ev~------------------------------------- 472 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDM-EVV------------------------------------- 472 (577)
T ss_pred cCCccccCCcceEeeccch--hHhhhhhcccccccchhh-hhh-------------------------------------
Confidence 3222211122233332211 000001111111111110 000
Q ss_pred ccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc
Q 001224 698 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 777 (1120)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 777 (1120)
..+.+.+. +.
T Consensus 473 ---------------------------------------------------------------s~~~~~~s-------~~ 482 (577)
T KOG0642|consen 473 ---------------------------------------------------------------SDLLIFES-------SA 482 (577)
T ss_pred ---------------------------------------------------------------hheeeccc-------cC
Confidence 00000000 00
Q ss_pred CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCc
Q 001224 778 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 856 (1120)
Q Consensus 778 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~ 856 (1120)
....+ ....+.-+...|.+.+.+++. |+.|+++|..++.
T Consensus 483 ~~~~~----------------------------------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 483 SPGPR----------------------------------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred CCccc----------------------------------------ccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 00000 123345566667777777777 8999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224 857 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 857 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
.+.....|...++++++.| +|-+|++|+.|+.|++|.+....++.....|..
T Consensus 523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence 9999999999999999999 999999999999999999988877777666653
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=1.4e-14 Score=140.67 Aligned_cols=245 Identities=15% Similarity=0.216 Sum_probs=176.5
Q ss_pred CCCCccEEEEccCCC-----EEEEEeCCcEEEEEcCC--Cce--eeee-----cCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001224 823 PEEAVPCFALSKNDS-----YVMSASGGKISLFNMMT--FKT--MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDS 888 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~-----~l~~~sdg~i~vwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg 888 (1120)
|..+++.+.|.|+.. .||+ ++..+|+|.+.. .+. ...+ ..+..++++..|..-+.++|.+.+-|.
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 889999999999874 3444 455799999873 221 1112 224568999999988889999999999
Q ss_pred cEEEEEeecce---eeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEE
Q 001224 889 SIQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 964 (1120)
Q Consensus 889 ~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 964 (1120)
+..|||++++. ....+-+|..+|..++|..++ +.+||+|.||.||++|++.-+. ...+-..... ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~---~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDPSP---STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCCCC---CCcceee
Confidence 99999999863 467788999999999999865 5789999999999999988443 2222222111 1356788
Q ss_pred EEcc-CCcEEEE-E-eCCeEEEEEcCCc-eeeeccccCCCCCCeeEEEECCCC-cEEEEEEcCCcEEEEEcCCcceeeee
Q 001224 965 QFHQ-DQIHFLV-V-HETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus 965 ~fsp-dg~~la~-~-~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
+|++ |-+++|+ + ....|.|.|++.- ..+..+ .+|.+.|..|+|.|.. ..|.+++.|..+.|||+...-.-...
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence 8887 4577777 5 4457999998753 334444 4899999999999965 57999999999999999765431111
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224 1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
.+...... ++.|+ -+.|+|..++.++.+. ++++.+-
T Consensus 327 dPilay~a---~~EVN--qi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 327 DPILAYTA---GGEVN--QIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred Cchhhhhc---cceee--eeeecccCCCEEEEEe-cCeeeEE
Confidence 11111111 33466 7899988888988876 4555543
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=3.1e-15 Score=145.16 Aligned_cols=253 Identities=16% Similarity=0.259 Sum_probs=186.5
Q ss_pred eccCCCCceEEEEecCCC----eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 360 TLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~----~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
.+.|.-+++.+.|.||.+ .||||.+ -.+++|.+...+..... ........-..+..++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 467999999999999873 3677655 78999999743221110 0011111234567899999999
Q ss_pred C-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee--
Q 001224 436 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-- 512 (1120)
Q Consensus 436 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-- 512 (1120)
. |-+++.+++-|-+..|||++++..-.....|-.|...|..|+|...+.. ++++.|.||+||+||++..+.-..+-
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 8899999999999999999997432222357789999999999998877 89999999999999998765543332
Q ss_pred -ccccCeEEEeeccCCCceEEEEEecC-CeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224 513 -GHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589 (1120)
Q Consensus 513 -~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~ 589 (1120)
....+...++|+. .+-+++++-..| ..|.+.|++... ....+..|...|..++|.|...
T Consensus 239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~----------------- 300 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS----------------- 300 (364)
T ss_pred CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----------------
Confidence 2245667788764 344688887765 578999998754 5568899999999999999877
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------eeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001224 590 TTKNRFLAAGDDFSIKFWDMDSVQ------LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 650 (1120)
..+.+++.|..+.+||+...- ++..+.. ...|+.+.|++ .+.+++++.. +.+.+
T Consensus 301 ---~hictaGDD~qaliWDl~q~~~~~~~dPilay~a---~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 ---SHICTAGDDCQALIWDLQQMPRENGEDPILAYTA---GGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ---ceeeecCCcceEEEEecccccccCCCCchhhhhc---cceeeeeeecccCCCEEEEEec-CeeeE
Confidence 679999999999999997532 2222222 23689999997 6778877764 34443
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=1.6e-15 Score=146.89 Aligned_cols=228 Identities=18% Similarity=0.266 Sum_probs=165.6
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~ 440 (1120)
+-+.|.|+.|.|++..+++. .|..|.+|+++.+..+.. .+. ...-.+|....++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev~------------ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EVL------------SSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-eec------------ccccccccceecccccCCCCccce
Confidence 45699999999999974443 389999999998776321 111 001234677888999999 8888
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeEEeeccccCeE
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVY 519 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~ 519 (1120)
+++.+ |+++..||+++.++...+ -..|...|..+.|+|+-+. +|++|++||.|++||.+. ..+++++.+|...|+
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 88765 889999999987655432 3478889999999999887 899999999999999984 667899999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCcee--eeCCC------CceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPG------RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~------~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
++.|++..+ ++|++|+.|..|.+|....-..... +.... ........-+||.......+...+.+++|+.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999998776 7999999999999997654322111 11100 01122223445543333344557888888776
Q ss_pred CCEE-EEEeCCCeEEEEECC
Q 001224 592 KNRF-LAAGDDFSIKFWDMD 610 (1120)
Q Consensus 592 ~~~l-~~~~~dg~i~iwd~~ 610 (1120)
..++ ++-+.||.+.|=.+.
T Consensus 342 dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCeeEEEeccCceEEeecCC
Confidence 6655 557889998886553
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.6e-15 Score=165.79 Aligned_cols=259 Identities=16% Similarity=0.180 Sum_probs=172.8
Q ss_pred cEEEEEEcC--CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224 759 KISRLIFTN--SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 836 (1120)
Q Consensus 759 ~i~~l~~s~--~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~ 836 (1120)
.|+.+.+-. |...+++++.||.|+||+--.... ....-+.-|..-++.... ..+.-.-+.|-...
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------~~~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKW------KKPELVTAWSSLSDQLPG-------ARGTGLVVDWQQQS 1177 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEeccccccc------CCceeEEeeccccccCcc-------CCCCCeeeehhhhC
Confidence 444444432 344577777778888776311100 000012233333333221 11111334566555
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeEeecccccc-
Q 001224 837 SYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR- 910 (1120)
Q Consensus 837 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~- 910 (1120)
.+|++++ -..|+|||+..-.++..+.. ....|+++.-+-..|+++|+|..||.|++||.+.. ..+...+.|+..
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 5566555 57899999987777666553 34457888776657899999999999999998753 356777889888
Q ss_pred -eEEEEEccCCCE-EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224 911 -ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988 (1120)
Q Consensus 911 -V~~l~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~ 988 (1120)
|..+.+-+.|-. |++|+.||.|++||++.........+.. +....+..+++..+++...+|+|+.+.|+||++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 999999887754 9999999999999999853222111111 11101247999999999999998779999999864
Q ss_pred ceeeeccccC-----CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 989 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 989 ~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
+.+..+... ...+.+.|++|.|-.-+||+|+.|.+|.||.....+
T Consensus 1335 -~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 -EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333333221 125678999999999999999999999999876654
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=1e-12 Score=149.96 Aligned_cols=150 Identities=17% Similarity=0.319 Sum_probs=123.4
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 449 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~ 449 (1120)
+-++++.-+ +++|+.-+.|++|++...+... .+.||.+.|.++.||-||+++++.|.|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666665 9999999999999987322211 28899999999999999999999999999
Q ss_pred EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc-cCeEEEeeccCCC
Q 001224 450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKEN 528 (1120)
Q Consensus 450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 528 (1120)
+++|++++.+... .+.-+|+.+|+.+.|.|. . ++|++.|.+.++|+ ..+..+..+.+|. ..|+.++..+ +
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-~---i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~--~ 269 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN-R---IITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPI--G 269 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc-e---eEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcC--C
Confidence 9999999988665 245689999999999998 4 99999999999997 4566666888776 4578887643 3
Q ss_pred ceEEEEEecCCeEEEEecCC
Q 001224 529 IQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 529 ~~~l~s~~~dg~i~iwd~~~ 548 (1120)
...+++++.|+.+++|++..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 47899999999999998753
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.6e-15 Score=138.37 Aligned_cols=253 Identities=16% Similarity=0.211 Sum_probs=172.3
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 445 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 445 (1120)
.|.+-+|+|.+++ +++|..+|+|.+..+..--.-... . .-....-...+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~-------~--~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE-------P--PGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC-------C--CCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 4566689999995 999999999999998542111000 0 0000111247899999999998 55677776
Q ss_pred CCCeEEEEEccCCce---eeeeee--ecccc-----cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 446 SRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
||.|+=|.++.... .+...+ ...|. -.|++|-..|... -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 111001 11222 3588999998877 46777789999999999999999999999
Q ss_pred cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
+.|.++.-- +....+++|+.||++|+||.++.+....+......- ..-|+ -..-|.++ .-+..++
T Consensus 157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~lRp~--------~g~wigal--a~~edWl 221 (325)
T KOG0649|consen 157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---LLRPD--------WGKWIGAL--AVNEDWL 221 (325)
T ss_pred ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChh---hcCcc--------cCceeEEE--eccCceE
Confidence 999998752 222479999999999999999988776554322110 00111 11122233 3334567
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
++|+ ...+.+|+++..++...+....+ +..+.|. .+.+++++..+.|.-|.+.
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEecccc---eeEeeee--cceEEEeccccceeeeeec
Confidence 6655 56799999999999888876554 6667775 4467777777788888664
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=156.58 Aligned_cols=275 Identities=12% Similarity=0.157 Sum_probs=204.0
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--C
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 437 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--d 437 (1120)
+-+|.+-|+.|.|+..|. ++++|+.|..|.+||+..++.... ...||...|....|-| +
T Consensus 138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCC
Confidence 345999999999999999 599999999999999999887654 3678999999999988 5
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe---ecc
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH 514 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~h 514 (1120)
.+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.=.|++.+.....+ ..+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 678999999999999887655545555568889999999999999887 7999999999999999887654333 223
Q ss_pred cc---CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 515 EA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 515 ~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
.. ....++.+|... ..+++++.|..+++||.+....... .+.+. .|.|. .+.....-.|++++|+.+
T Consensus 278 ~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHD 347 (559)
T ss_pred CccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCC
Confidence 33 356677666543 5889999999999999875322110 00000 11111 111123336777777777
Q ss_pred CCEEEEEeCCCeEEEEECCCCc------------eeEE-EecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCcc
Q 001224 592 KNRFLAAGDDFSIKFWDMDSVQ------------LLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 592 ~~~l~~~~~dg~i~iwd~~~~~------------~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
+..|++...|-.|++++..-+. .+.. +++|.....|..+-| -|...++++|+.-|.|.||+-.++
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~- 426 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG- 426 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-
Confidence 7778888888889999643222 2233 677777677888776 578899999999999999998887
Q ss_pred hhhhhccc
Q 001224 658 RLLRTFEN 665 (1120)
Q Consensus 658 ~~~~~~~~ 665 (1120)
+.++.+++
T Consensus 427 eii~~Meg 434 (559)
T KOG1334|consen 427 EIIRFMEG 434 (559)
T ss_pred HHHHHhhc
Confidence 66666554
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-15 Score=156.53 Aligned_cols=198 Identities=16% Similarity=0.164 Sum_probs=160.2
Q ss_pred cEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc
Q 001224 828 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 906 (1120)
Q Consensus 828 ~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 906 (1120)
.+++|+.+|..+++|+ ||++|+|+..+...+.....|..+|.++.|+| |+++|++-+.| ..+||++.++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999977666553
Q ss_pred --cccceEEEEEccCC-----CEEEEEeCCCCEEEEECCCcccccceee-eccCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001224 907 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVV-H 977 (1120)
Q Consensus 907 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~fspdg~~la~~-~ 977 (1120)
-......+.|+.|+ ...+....-+.|+.|++..+........ +....+ ..|++++.|+||+++|.| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 22345678888877 3344555567788888776554211111 111111 368999999999999995 8
Q ss_pred CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999998877654 58999999999999999999999999999887754
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=4.7e-14 Score=162.32 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=150.2
Q ss_pred ccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCC----ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224 422 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 496 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~ 496 (1120)
+..|...|..++.++.. .++++||.||+|++|+...- ...+...++.....++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 77899999999998854 99999999999999998631 22333344544577899999999999 5888999999
Q ss_pred EEEEECCCC--c-----eeEEeecc-ccCeEEE-eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC--CCCceeEE
Q 001224 497 IKVWDATNG--A-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTM 565 (1120)
Q Consensus 497 i~vwd~~~~--~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~ 565 (1120)
|++.++... + +.+....+ .+.+.++ ++........++.+..-+.|..||++.....+.+.. ..+
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG----- 1196 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG----- 1196 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-----
Confidence 999998762 1 11222222 2334444 332222223788888889999999988665554432 233
Q ss_pred EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC---CCEEEEE
Q 001224 566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVS 642 (1120)
Q Consensus 566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~ 642 (1120)
.++.++.+|.++++++|+..|.+.+||++-+.++..+..... ..+..+...|- ....+++
T Consensus 1197 ----------------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1197 ----------------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred ----------------ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEe
Confidence 444555555556999999999999999999999988875443 56777777663 2455444
Q ss_pred E--CCCcEEEEEccCc
Q 001224 643 T--NDNGIKILATSDG 656 (1120)
Q Consensus 643 ~--~dg~i~iwd~~~~ 656 (1120)
+ ..+.|.+|++.+|
T Consensus 1260 ~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cccCCCceeeeecccC
Confidence 4 4788999999988
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3e-15 Score=153.83 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=151.7
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceee
Q 001224 869 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 948 (1120)
Q Consensus 869 ~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 948 (1120)
.+++|+. ++..|++|+.||.+|||+..+...+.....|..+|.++.|||||++|++.+.| ..+||+++++-..
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~----- 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL----- 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence 7899999 89999999999999999988887778888899999999999999999999999 8999999997322
Q ss_pred eccCCCCCCCCCCcEEEEccCC---cE-EEE-E-eCCeEEEEEcCCcee---eeccccCCCCCCeeEEEECCCCcEEEEE
Q 001224 949 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV-V-HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus 949 ~~~~~~~~~~~~i~~~~fspdg---~~-la~-~-~d~~v~i~d~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
+.... .........+.|+.|+ .+ +++ . .-+.|+.||+..... .+....-.-...|++++.|+||++++.|
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 1111356788898887 33 333 2 345666666543222 1111111124579999999999999999
Q ss_pred EcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1020 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1020 ~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
+.||.|.|++..+.+.+.-++ ..| . ..++.+.|+| |.+++++.+.|....|..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH-~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAH-L--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhh-e--eeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999999988886655 222 2 2344999999 6899999999999999998763
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1e-14 Score=152.75 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=160.5
Q ss_pred CcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccc
Q 001224 720 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 799 (1120)
Q Consensus 720 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 799 (1120)
...++..+.||.+.+.+-....+ -.-..|.+.+.+-.|+|||.-|+++++||.|++|.-
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE--------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr------------- 133 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVE--------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR------------- 133 (737)
T ss_pred cceEEEEcCCceEEEecccchhh--------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-------------
Confidence 46788888899887766432111 111458999999999999999999999999999973
Q ss_pred ccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224 800 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879 (1120)
Q Consensus 800 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 879 (1120)
+|-+... +.. ....|.|++|.|+...++.+..+.+.+=.+.....+-..++|++-|.++.|++ .+.
T Consensus 134 ----------sGMLRSt-l~Q--~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~ 199 (737)
T KOG1524|consen 134 ----------SGMLRST-VVQ--NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSN 199 (737)
T ss_pred ----------cchHHHH-Hhh--cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-ccc
Confidence 3322211 111 67889999999999999999888899888887777888899999999999999 889
Q ss_pred EEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCC
Q 001224 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 959 (1120)
Q Consensus 880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 959 (1120)
++++|++|-..+|||.. |..+..-..|.-+|++++|.|| +.++.++. +++|+=.. -.+
T Consensus 200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p-------------------~~G 257 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP-------------------RVG 257 (737)
T ss_pred ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC-------------------Ccc
Confidence 99999999999999955 6667777889999999999999 55555553 23441111 125
Q ss_pred CCcEEEEccCCcEEEEE-eCCeEE
Q 001224 960 SDTRVQFHQDQIHFLVV-HETQLA 982 (1120)
Q Consensus 960 ~i~~~~fspdg~~la~~-~d~~v~ 982 (1120)
+|..++||+||..+++| ..|.+.
T Consensus 258 SifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 258 SIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ceEEEEEcCCCceeeccccCceEE
Confidence 89999999999999985 566544
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=5.7e-13 Score=134.50 Aligned_cols=303 Identities=15% Similarity=0.194 Sum_probs=198.9
Q ss_pred cccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224 757 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 836 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~ 836 (1120)
...+..+.|+.+...|..++.+|. ++|+...... ... .......|..+-|+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---------------------~~~----~~~~~~~IvEmLFSS-- 56 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---------------------CFS----KDTEGVSIVEMLFSS-- 56 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH---------------------hhc----ccCCCeEEEEeeccc--
Confidence 345666778888887777777764 5555421110 000 000222344444544
Q ss_pred CEEEEEe-C--CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc---cccc
Q 001224 837 SYVMSAS-G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKR 910 (1120)
Q Consensus 837 ~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~ 910 (1120)
.++|..+ + ..+++.+.+....+..+. ...+|.+|.+.. +.|++.-++ .|+|||+.+.++++++.. +...
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccc
Confidence 3555554 3 459999998877776665 456799999975 345555444 499999999998887753 5556
Q ss_pred eEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC--eEEEEEc
Q 001224 911 ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET--QLAIFET 986 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~--~v~i~d~ 986 (1120)
+.++.+++.+.+||.-+ .-|.|.+||+.+- +.......|. +.+.+++|+++|.+||+++++ .||||.+
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-----~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINL-----QPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccc-----eeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence 77777777788998533 3588999999883 3344455565 389999999999999997554 4999999
Q ss_pred CCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCC--------------CcccCCCC---
Q 001224 987 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP--------------SAYLPAGV--- 1049 (1120)
Q Consensus 987 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~--------------~~~~~~g~--- 1049 (1120)
.+|+.+.+|+-+.-...|.+++|+||+++|++.+..++|.||.++.-..-..-.+ ..++|..-
T Consensus 204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~ 283 (391)
T KOG2110|consen 204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV 283 (391)
T ss_pred CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence 9999999988655567899999999999999999999999999875442110000 00111110
Q ss_pred -------------CCCCccceEEEecC-CCCCEEEEEeCCCcEEEEecCCC--CCCCCCCCCCCCCCCC
Q 001224 1050 -------------SSSNVHPLVIAAHP-QEPNEFALGLSDGGVHVFEPLES--EGKWGVPPPVDNGSTS 1102 (1120)
Q Consensus 1050 -------------~~~~v~~~~i~~~p-~d~~~l~s~~~Dg~v~vW~~~~~--~~~~~~~~p~~~~~~~ 1102 (1120)
.+..-. .+++.+ ....++..++.||.++.+.++-. ...|-+.+-+-.++..
T Consensus 284 ~~~~R~FAt~~l~~s~~~~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~ 350 (391)
T KOG2110|consen 284 LDQSRKFATAKLPESGRKN--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSID 350 (391)
T ss_pred hhhccceeEEEccCCCccc--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCccc
Confidence 000001 233332 24578889999999999998764 3444444444334433
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=4.6e-14 Score=139.39 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=175.5
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
..+|+|.+|++|+.. +|++.+...|.||.......-. ..+++..|...|++|.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 478999999999994 9999999999999987654111 12358889999999999999999999
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee----EEeeccccCeE
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY 519 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~ 519 (1120)
|+.|..-+||....+...++...|..|...+++|.|+|.+. .+++||.-+.|.||-.+...-= +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999965555667777888999999999999999 6999999999999987654321 12234677899
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec-ccccceeEEEEcCCCCEEEEE
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
++.|++.+ -+|++|+.|+..|++..--.+. .+-.....+-..+ |-|...... ...+-+..+.|+|+|+.|+-.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~V-dekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGV-DEKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeecc-ccCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 99998755 6899999999999985321000 0000000000000 000000000 223356667777788889999
Q ss_pred eCCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001224 599 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 642 (1120)
+.|..+.+=|..... .+....... -+..++.|-.+...+++|
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVAAG 267 (361)
T ss_pred cCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceeecC
Confidence 999999999987664 233332221 245667776555444433
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-13 Score=159.32 Aligned_cols=269 Identities=14% Similarity=0.163 Sum_probs=180.0
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
-+.++..|...|..++.++....++++|+.||+|+|||...-..-. ..++ ...++.-...++.++.+.
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEEec
Confidence 4556667999999999988774479999999999999986522110 0000 001233356789999999
Q ss_pred CCCCeEEEEECCCeEEEEEccCC--ceee--eeeeeccc-cc-CeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH-VG-GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~--~~~~--~~~~l~~h-~~-~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
+.|..+|+++.||.|++.+++-. .... +......+ .+ .|..-+|....+...++.+..-+.|..||++....+.
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999999999999998762 1111 11111222 22 3444455554443367888888999999999877766
Q ss_pred Eee--ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC-CCceeEEEEcCCCCeEEecccccceeEE
Q 001224 510 IFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 510 ~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
+++ ...+.|++++.+ +.+.++++|+..|.+.+||++-..++.....+ ..++..+...|-..
T Consensus 1188 ~lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~-------------- 1251 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP-------------- 1251 (1431)
T ss_pred hhhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC--------------
Confidence 554 245789999975 44579999999999999999987766554433 23444444443322
Q ss_pred EEcCCCCEEEEE-e-CCCeEEEEECCCCceeEEEecCCC-----------------CCCcCeEEEcCCCCEEEEEECCCc
Q 001224 587 QFDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNG 647 (1120)
Q Consensus 587 ~~~~~~~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~ 647 (1120)
.....+++ + ..+.|.+|++.+|.+...+-.... ........+...+..+.+|+.|..
T Consensus 1252 ----~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1252 ----QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred ----CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc
Confidence 22334443 3 578899999999977666643211 011122333345678899999999
Q ss_pred EEEEEccCc
Q 001224 648 IKILATSDG 656 (1120)
Q Consensus 648 i~iwd~~~~ 656 (1120)
|+.||....
T Consensus 1328 IR~wD~~~p 1336 (1431)
T KOG1240|consen 1328 IRKWDPTRP 1336 (1431)
T ss_pred eeeccCCCc
Confidence 999998776
No 211
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.61 E-value=3.5e-11 Score=124.95 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=108.8
Q ss_pred ccccEEEEEEcCCCceEEEeccCc-eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224 756 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
+...|.-..+..+++.++.+..|| .+-|++. .++...... +.-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEee----CCccceEEEEEcC
Confidence 455677777777777788888887 6777765 333322211 1456799999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeEeeccccc
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+.-+| .|++||+.+++....- ...+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcc
Confidence 999999998 57899999999987666666777899999999 999999988776 6899999988755432 2333
Q ss_pred ceEEEEEccCCCEEEEEe
Q 001224 910 RITGLAFSHALNVLVSSG 927 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s 927 (1120)
.=.+-+|.||+++|.--+
T Consensus 490 ~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccCcccCCCCcEEEEEe
Confidence 345678999999887554
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=7.3e-12 Score=143.18 Aligned_cols=195 Identities=14% Similarity=0.220 Sum_probs=152.0
Q ss_pred ceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC-----ceEEEEEcCCCCeE
Q 001224 367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGSLF 441 (1120)
Q Consensus 367 v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~~l 441 (1120)
|....+.-+.+ .++.++.++.+.|||...+..... . .+.. ...-+.++++.-++
T Consensus 90 i~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~-------------------i-~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 90 IFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK-------------------I-QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccchhhhcc-eEEEEEcCceEEEEecccCceehh-------------------c-CCCceEEEEeEEEEeccCcEEEE
Confidence 33344555555 488889999999999987655431 0 1111 22334567788899
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE-EeeccccCeEE
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYS 520 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~ 520 (1120)
++|+.-+.|.+|+..... ....+.||.+.|.++.|+.||. ++++.|+|.++|+|++++++... +.-+|...|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn---~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDN---KPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccC---CcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999988322 1114889999999999999999 79999999999999999998876 77789999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
++|++. .+++++.|-+.++|+.+.... ..+.+|..+.++.++.+++...+++++.
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGN 278 (967)
T ss_pred EEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEeecc
Confidence 998654 799999999999996653221 2455566667788888888889999999
Q ss_pred CCeEEEEECCCC
Q 001224 601 DFSIKFWDMDSV 612 (1120)
Q Consensus 601 dg~i~iwd~~~~ 612 (1120)
||.+++|++...
T Consensus 279 Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 279 DSTLKLWDLNGR 290 (967)
T ss_pred Ccchhhhhhhcc
Confidence 999999998643
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.3e-15 Score=153.54 Aligned_cols=238 Identities=11% Similarity=0.156 Sum_probs=172.6
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--C
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 437 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--d 437 (1120)
+.+|.+-|+|++|+.||. +|++|+.|-.+.|||+-..+.++. +-.||...|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 567999999999999999 699999999999999998877775 5789999999999999 6
Q ss_pred CCeEEEEECCCeEEEEEccCCc-------eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce-e-
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-Q- 508 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~-~- 508 (1120)
.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++.... -
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998522 12233456679999999999999966 799999999999999986321 1
Q ss_pred -----E---EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee-----eeCCCCceeEE-EEcCCCCeE
Q 001224 509 -----Y---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTM-AYSADGTRT 574 (1120)
Q Consensus 509 -----~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~-~~s~~g~~~ 574 (1120)
. .+...--...++.+++... .+|+.|+.|--.++||.+...+... ...+.....++ -|+|.+-+.
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1 1111122345667776554 6999999999999999643222110 01111112222 245554433
Q ss_pred Eecccccc---eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 001224 575 YQGFRKRS---LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 618 (1120)
Q Consensus 575 ~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 618 (1120)
..|..... .+.+.|+|+|..|+..-..-.|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 33322222 455789999998888766778999999887765544
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=5.1e-13 Score=147.20 Aligned_cols=325 Identities=11% Similarity=0.120 Sum_probs=197.9
Q ss_pred EEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001224 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 610 (1120)
Q Consensus 531 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 610 (1120)
++++-..++.|.+.|..+.+....+.........+.++||| +++++++.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg---------------------r~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG---------------------RYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S---------------------SEEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC---------------------CEEEEEcCCCeEEEEECC
Confidence 34566678999999999877777666554433344555555 478888899999999999
Q ss_pred CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhH
Q 001224 611 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 689 (1120)
Q Consensus 611 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1120)
+++.+.++.... ...++++|+||++++++. .++.+.++|..+. +.++.+......
T Consensus 67 ~~~~v~~i~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~-------------------- 122 (369)
T PF02239_consen 67 TGKVVATIKVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP-------------------- 122 (369)
T ss_dssp SSSEEEEEE-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE---------------------
T ss_pred cccEEEEEecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeeccccccc--------------------
Confidence 999999987543 367899999999998775 5899999998876 444433211100
Q ss_pred hhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCC
Q 001224 690 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 769 (1120)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 769 (1120)
......++.++..++..
T Consensus 123 ---------------------------------------------------------------~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 123 ---------------------------------------------------------------VDGPESRVAAIVASPGR 139 (369)
T ss_dssp ---------------------------------------------------------------TTTS---EEEEEE-SSS
T ss_pred ---------------------------------------------------------------ccccCCCceeEEecCCC
Confidence 00123566777778877
Q ss_pred ceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCc
Q 001224 770 NAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK 846 (1120)
Q Consensus 770 ~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~ 846 (1120)
..++..-. .+.|.+-|+.... .+....+. .........|+|++++++++. ++.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSS---------------------CEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEEccCCeEEEEEecccc---------------------ccceeeec---ccccccccccCcccceeeecccccce
Confidence 75555544 4766665542210 00000000 233455789999999988875 678
Q ss_pred EEEEEcCCCceeeeec----CCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 847 ISLFNMMTFKTMATFM----PPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 847 i~vwd~~~~~~~~~~~----~~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
|.++|.++++.+..+. .|......+ .+|. .+...++.-....+.+||..+++.++++...... ..
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 9999999987776543 233333332 1221 1222222222345667888889999999887776 78
Q ss_pred EEEccCCCEEEEE----eCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEc
Q 001224 914 LAFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFET 986 (1120)
Q Consensus 914 l~~s~d~~~l~s~----s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~---~d~~v~i~d~ 986 (1120)
+..+|++++|... ...++|.++|.++.+.. ..+....+ ..+..+.|++||+++.++ .++.|.+||.
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~--~~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV--KTITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE--E-HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCccee--EEEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 8899999999887 45588999999985321 11111111 137899999999988773 4448999999
Q ss_pred CCceeeeccc
Q 001224 987 TKLECVKQWV 996 (1120)
Q Consensus 987 ~~~~~~~~~~ 996 (1120)
.+.+.+..+.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999987765
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-13 Score=157.88 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=145.0
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
..+..|...+.+.+|||||++|+.++..+ ..|.+||+.+++..... .+.+| ..+++||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS 256 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS 256 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence 34456788999999999999754444332 47999999887643210 12233 3468999
Q ss_pred CCCCeEEEEE-CCCeEEEE--EccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEe
Q 001224 436 PDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIF 511 (1120)
Q Consensus 436 pdg~~las~~-~dg~v~iw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~ 511 (1120)
|||++|+.++ .+|.+.|| |+.++... .+..|...+.+.+|+|||+. +++++..++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999999865 67866655 66665532 36667778899999999995 3444556788888887532 223333
Q ss_pred eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 512 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 512 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
.+.. ....| +++|++|+..+.++ +.+||+.++........ .... ...|+|+
T Consensus 332 -~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~---------------------~~~~sPd 382 (429)
T PRK01742 332 -GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDE---------------------SPSISPN 382 (429)
T ss_pred -cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCC---------------------CceECCC
Confidence 3433 33455 45667888777765 55588876543221111 0111 2456666
Q ss_pred CCEEEEEeCCCeEEEEEC--CCCceeEEEecCCCCCCcCeEEEcCC
Q 001224 592 KNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 635 (1120)
Q Consensus 592 ~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 635 (1120)
|++++.++.++.+.+|++ .+|+.+..+..+.+ .+..++|+|-
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 678999988898888875 35777777765433 5778899884
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=4e-13 Score=153.98 Aligned_cols=224 Identities=14% Similarity=0.139 Sum_probs=148.5
Q ss_pred CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceee
Q 001224 386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 462 (1120)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~ 462 (1120)
+..|.|||....... .+..|...|.+.+|||||++||.++.+ ..|.+||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755422 256688899999999999999988654 479999999876332
Q ss_pred eeeeecccccCeEEEEEcCCCCceEEEE-ecCCCcEEEE--ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cC
Q 001224 463 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LD 538 (1120)
Q Consensus 463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s-~s~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d 538 (1120)
...+.+| ...++|+|||+. |+. .+.+|.+.|| |+.++. ...+..+...+....|++ +|+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2234444 446899999995 444 4567776555 655555 455666777777788855 456665544 57
Q ss_pred CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 001224 539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 618 (1120)
Q Consensus 539 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 618 (1120)
|...+|+++..........+.. ....|+|+|++++.++.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 8888998764332221111111 1234666667787777655 556999888755332
Q ss_pred ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--Ccchhhhhccccc
Q 001224 619 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLA 667 (1120)
Q Consensus 619 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 667 (1120)
... ....++|+|||++|+.++.++.+.+|.+. ++ ...+.+..+.
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~ 415 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSD 415 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCC
Confidence 221 23568899999999999999998888763 34 4455554443
No 217
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=5.7e-13 Score=150.15 Aligned_cols=283 Identities=11% Similarity=0.041 Sum_probs=188.8
Q ss_pred CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eE
Q 001224 539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LT 616 (1120)
Q Consensus 539 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~ 616 (1120)
+.+.+|+++........-.....|.++.|+|... +.++.|+.+|.|.+||++.+.. ..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--------------------~ll~gG~y~GqV~lWD~~~~~~~~~s 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--------------------NLLAGGCYNGQVVLWDLRKGSDTPPS 281 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCc--------------------ceEEeeccCceEEEEEccCCCCCCCc
Confidence 3788999987643333333344556666655544 5677788999999999987765 22
Q ss_pred E--EecCCCCCCcCeEEEcCCC--CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhh
Q 001224 617 S--IDADGGLPASPRIRFNKDG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 692 (1120)
Q Consensus 617 ~--~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1120)
. ...+.|...+..+.|..+. .-+++++.||.|..|+++.-..............
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---------------------- 339 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---------------------- 339 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----------------------
Confidence 2 2334566678888887644 4489999999999997754322221111100000
Q ss_pred hccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCC-Cce
Q 001224 693 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNA 771 (1120)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~ 771 (1120)
.. ........++++.|.+. -..
T Consensus 340 ---------------------------------------------------~~------~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 340 ---------------------------------------------------KG------QQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred ---------------------------------------------------cc------cccccccceeeEeeccCCCce
Confidence 00 00113355677888764 445
Q ss_pred EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC--cccccCCCCCCCCCccEEEEccCCCEEE-EEeCCcEE
Q 001224 772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI--MMTNDVTDSNPEEAVPCFALSKNDSYVM-SASGGKIS 848 (1120)
Q Consensus 772 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~-~~sdg~i~ 848 (1120)
+++|+..|.|.--+... ...+. ..........|.++|.++.++|-+..++ +++|-+++
T Consensus 363 FiVGTe~G~v~~~~r~g-------------------~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr 423 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKG-------------------YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR 423 (555)
T ss_pred EEEEcCCcEEEEEeccC-------------------CcccccccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence 77888888877522111 11111 0000001123889999999999776544 45599999
Q ss_pred EEEcC-CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc--eeeEeecccccceEEEEEccCCCEEEE
Q 001224 849 LFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVS 925 (1120)
Q Consensus 849 vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s 925 (1120)
||... ....+..+..+...+++++|||.....+|++..||.|.+||+... +.+....-+....+.+.|+++|+.|+.
T Consensus 424 iWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred eccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE
Confidence 99988 666666777777789999999976789999999999999999753 344444445666778889999999999
Q ss_pred EeCCCCEEEEECCC
Q 001224 926 SGADSQLCVWSSDG 939 (1120)
Q Consensus 926 ~s~Dg~v~iWd~~~ 939 (1120)
|+..|++.+|++..
T Consensus 504 Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 504 GDANGTTHILKLSE 517 (555)
T ss_pred ecCCCcEEEEEcCc
Confidence 99999999999975
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=3.1e-13 Score=133.59 Aligned_cols=245 Identities=15% Similarity=0.144 Sum_probs=182.5
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC---CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV- 897 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~- 897 (1120)
...+|+|.+|++|+..+|++. ...|.||.... .+...++..|...|+++.|+| ..+.|++++.|..-+||...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 457899999999999999998 67899998865 446788999999999999999 888999999999999999843
Q ss_pred --ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 898 --DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 898 --~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
.+....+..|...+++|.|+|.++.+|+|+.-+.|.||=++.... .-.-+.... +....|+++.|+|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikk--PirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKK--PIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCC--ccccceeeeeccCCcceecc
Confidence 345556677899999999999999999999999999998776321 111111111 11247899999999999999
Q ss_pred E-eCCeEEEEEcC-----C-------------ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 976 V-HETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 976 ~-~d~~v~i~d~~-----~-------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
| .|+..+||..- + |+++.++. ...+.|..+.|+|+|..|+-.+.|++|.+-|.......
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 5 89998888742 1 22223332 34788999999999999999999999999998877532
Q ss_pred eeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1037 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1037 ~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
........+| .+++.|.. .+.++.++.|..-.++...+
T Consensus 242 v~~~~~~~lP---------~ls~~~is--e~~vv~ag~~c~P~lf~~~~ 279 (361)
T KOG1523|consen 242 VQSVATAQLP---------LLSVSWIS--ENSVVAAGYDCGPVLFVTDE 279 (361)
T ss_pred ccchhhccCC---------ceeeEeec--CCceeecCCCCCceEEEecc
Confidence 2222122233 23667765 35666666775545554443
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=8e-13 Score=130.82 Aligned_cols=240 Identities=14% Similarity=0.206 Sum_probs=169.2
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCC--eEEEEEecCCCcEEEE-EeCC------CcEEEEEe
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAI-GMDD------SSIQIYNV 895 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~las-g~~d------g~v~vwd~ 895 (1120)
....+++|+.|..-+++|.|...+||+.+-.+.......+.+. +.-|-|- .++||. |+.+ ..|.|||-
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 3455699999999999999988999998864443332222222 3333332 344543 3333 37999996
Q ss_pred ecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc--CCcEE
Q 001224 896 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHF 973 (1120)
Q Consensus 896 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--dg~~l 973 (1120)
...+++.++. ...+|.+|.+++| .|+..- .+.|.||.....-+. ...+.+.... .. -++..| +..+|
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kG--lC~~~~~~~k~~L 151 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KG--LCSLCPTSNKSLL 151 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----Cc--eEeecCCCCceEE
Confidence 6677777776 5688999999866 455443 567999998853322 1122222111 12 233334 34455
Q ss_pred EE-E-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc-EEEEEcCCcceeeeeCCCcccCCCCC
Q 001224 974 LV-V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVS 1050 (1120)
Q Consensus 974 a~-~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~iwd~~~~~~~~~~~~~~~~~~g~~ 1050 (1120)
|. | .-|.|.|-|+...+.-......+|.+.|.+++.+-+|.++|++|..|+ |||||..+|++++.+. .|..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d 225 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVD 225 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCc
Confidence 55 4 668999999987665333344589999999999999999999999998 9999999999998876 3434
Q ss_pred CCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1051 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1051 ~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
...++ .++|+| |..+|++.|+-|+|+|+.+...+
T Consensus 226 ~A~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 44477 999999 68999999999999999998755
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=2.1e-12 Score=142.39 Aligned_cols=322 Identities=15% Similarity=0.114 Sum_probs=190.3
Q ss_pred eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224 486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 565 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 565 (1120)
+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||++++.++.||.|.++|+.+.+...++... ....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence 46678888999999999999999999865443333454 567789999999999999999998766655442 234555
Q ss_pred EEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCC-----CCCcCeEEEcCCCCEE
Q 001224 566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLL 639 (1120)
Q Consensus 566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l 639 (1120)
++++||+ +++++ ..++.+.++|.++.+.+..+..... ...+..+..+|....+
T Consensus 84 ~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 84 AVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred EEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 5555554 66655 4799999999999999988764321 1245567778887766
Q ss_pred EEEECC-CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccC
Q 001224 640 AVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 718 (1120)
Q Consensus 640 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1120)
+..-.| +.|.+.|..+........
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~------------------------------------------------------- 167 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTT------------------------------------------------------- 167 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEE-------------------------------------------------------
T ss_pred EEEEccCCeEEEEEeccccccceee-------------------------------------------------------
Confidence 655554 667666654431100000
Q ss_pred CCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEec-cCceEEEeeecccccCCCCcc
Q 001224 719 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKA 797 (1120)
Q Consensus 719 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~ 797 (1120)
.+ .........|+|++++++++. ....+-++|..+...
T Consensus 168 ----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~------ 206 (369)
T PF02239_consen 168 ----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL------ 206 (369)
T ss_dssp ----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred ----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE------
Confidence 00 112334578888888776643 346777777543221
Q ss_pred ccccCceeecCCCCCcccccCCCCCCCCCccE-------EEE--ccCCCEEEE-EeCCcEEEEEcCCCceeeeecCCCCC
Q 001224 798 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-------FAL--SKNDSYVMS-ASGGKISLFNMMTFKTMATFMPPPPA 867 (1120)
Q Consensus 798 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~-------l~~--s~d~~~l~~-~sdg~i~vwd~~~~~~~~~~~~~~~~ 867 (1120)
+.....|... |..+... ..| ...+...++ .+.+.+.+||..+++.++++....++
T Consensus 207 -------v~~i~~g~~p--------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 207 -------VALIDTGKKP--------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------EEEEE-SSSB--------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------EEEeeccccc--------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 1111111110 1111111 111 223333322 23456778999999999999877666
Q ss_pred eEEEEEecCCCcEEEEE----eCCCcEEEEEeecceeeEeecccc-cceEEEEEccCCCEEEEEeCC--CCEEEEECCCc
Q 001224 868 ATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDGW 940 (1120)
Q Consensus 868 i~~l~~sp~d~~~lasg----~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~v~iWd~~~~ 940 (1120)
.-+..+| +++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..+ +.|.|||..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 8888899 89999887 455899999999998887775332 358899999999977544443 36999999996
Q ss_pred cccc
Q 001224 941 EKQK 944 (1120)
Q Consensus 941 ~~~~ 944 (1120)
+...
T Consensus 350 ~~~~ 353 (369)
T PF02239_consen 350 KEKK 353 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6533
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.3e-12 Score=129.40 Aligned_cols=290 Identities=12% Similarity=0.148 Sum_probs=185.8
Q ss_pred cceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccc
Q 001224 721 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 800 (1120)
Q Consensus 721 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 800 (1120)
..++++..|..|++|+-.. ..+..++ ......|++++|-|.+...++.+-.+.|.+|.........-
T Consensus 111 ~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r------ 177 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR------ 177 (445)
T ss_pred hhhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc------
Confidence 4567888999999999776 2222222 23567899999999876666666667889998643211000
Q ss_pred cCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCC
Q 001224 801 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 878 (1120)
Q Consensus 801 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 878 (1120)
.++. -+......+.+.+| ..|+++.|.+||..+++++ |..|.|||.+++..+.......+.++-+.||| |+
T Consensus 178 -~~~~----~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg 250 (445)
T KOG2139|consen 178 -NIRM----MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG 250 (445)
T ss_pred -cccc----ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence 0000 00011111223334 8899999999999999998 68899999999887766545567899999999 89
Q ss_pred cEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc----------cee-
Q 001224 879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----------NRF- 947 (1120)
Q Consensus 879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~----------~~~- 947 (1120)
.+|..++-|+..++|+............-++.|..-+|+|+|++|..+.. |.-++|.+....+.. ...
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 99999999999999955433223333334558999999999998765443 334555543321110 000
Q ss_pred -----eeccCCCCCCCCCCcEEEEccCCcEEEEEeCC---------eEEEEEcCCceeeeccccCC-CCCCeeEEEECC-
Q 001224 948 -----LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC- 1011 (1120)
Q Consensus 948 -----~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~---------~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~- 1011 (1120)
.....+.....+.+.+++|.|.|.+||+...+ .|.+||....-.+.....+. .......|+|.|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 01111222223578999999999999995332 36677776554433321110 122356677776
Q ss_pred --CCcEEEEEEcCCcEEEEEcC
Q 001224 1012 --DSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 1012 --dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
+|.+|..+-..|.+.-|++.
T Consensus 410 ~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 410 KNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCCcEEEEEeccCceEeeeeE
Confidence 67778777777888777753
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=7.5e-13 Score=139.52 Aligned_cols=214 Identities=15% Similarity=0.186 Sum_probs=151.8
Q ss_pred ccCCCEEEEEe-CCcEEEEEcCCCceeeeecC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224 833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 907 (1120)
Q Consensus 833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 907 (1120)
.+.+--+.+|- -|.|.+.|....+..+.+.. ....++|+.|-|.+...+.++-.+|.+++||.. +
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~ 251 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------I 251 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------c
Confidence 35565666776 68888888765333222221 246799999999777788888899999999962 1
Q ss_pred ccceEEEEEc--cCCCEEEEEeC-----CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCC
Q 001224 908 SKRITGLAFS--HALNVLVSSGA-----DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 979 (1120)
Q Consensus 908 ~~~V~~l~~s--~d~~~l~s~s~-----Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~ 979 (1120)
....+...|. +++..++.... +.-+.-|-+-. +.|...+|+|||++||+ +.||
T Consensus 252 ~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~-------------------g~in~f~FS~DG~~LA~VSqDG 312 (636)
T KOG2394|consen 252 VCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE-------------------GSINEFAFSPDGKYLATVSQDG 312 (636)
T ss_pred cccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc-------------------ccccceeEcCCCceEEEEecCc
Confidence 1222222222 34444432211 12222232222 37899999999999999 7999
Q ss_pred eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEE
Q 001224 980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1059 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i 1059 (1120)
.++|||..+.+++.... ..-+...|++|||||+|+++|++|-.|.||.+...+.+++-+ || ..+|. .+
T Consensus 313 fLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-------GH-kSWVs--~V 380 (636)
T KOG2394|consen 313 FLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-------GH-KSWVS--VV 380 (636)
T ss_pred eEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-------cc-cccee--eE
Confidence 99999999988876654 346789999999999999999999999999999999998755 43 45566 66
Q ss_pred EecCC-----------------------------------------------CCCEEEEEeCCCcEEEEecCCCC
Q 001224 1060 AAHPQ-----------------------------------------------EPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1060 ~~~p~-----------------------------------------------d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+|.|- ....+.+++.|-.+.+||+.+..
T Consensus 381 aFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 381 AFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred eecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 66620 11357889999999999999876
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=9e-12 Score=135.20 Aligned_cols=545 Identities=10% Similarity=0.093 Sum_probs=308.2
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
.+....|++|+....+ +|+|+.||.++|-.+.+...-. +.-.+...+.-.-...+.||.+.|..+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~----~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDL----NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCcc----cccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4567789999999985 9999999999999987643221 1111222233333457999999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-EEeeccccCeEEE
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 521 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~ 521 (1120)
+...+|.|.||-+-.|.-.... .-....+.|.+++|+.||.+ +...-.||.|.|=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999999887654321 12335668999999999995 666667777766554322111 122221 12235
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc-eeE-EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~-~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
.|+ +|...++.+-..|.+.++|....-.+ ..+... |+. -.++.-+.+ +.++....-...-..|+...|+.+.
T Consensus 163 ~ws--~D~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 163 LWS--EDLEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eec--ccHHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence 554 44456677777899999987532111 000000 111 112211211 0111100111122356788999999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 679 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1120)
..|.+.|..-.+...-..+... ..+....|+++|..|++++.+..- ... .-. ..+.
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da-----~~~-~d~-------n~v~-------- 292 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDA-----DEP-TDS-------NKVH-------- 292 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccc-----cCc-ccc-------ceEE--------
Confidence 9999998876554433333322 257889999999999998875210 000 000 0000
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224 680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 759 (1120)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1120)
-++|.| .....+.. ....
T Consensus 293 Fysp~G----------------------------------------------------------~i~gtlkv----pg~~ 310 (1189)
T KOG2041|consen 293 FYSPYG----------------------------------------------------------HIVGTLKV----PGSC 310 (1189)
T ss_pred Eeccch----------------------------------------------------------hheEEEec----CCce
Confidence 111111 11112222 2256
Q ss_pred EEEEEEcCCCceEEEeccCceEEEeeeccc--------c--cCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 760 ISRLIFTNSGNAILALASNAIHLLWKWQRT--------E--RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 760 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~--------~--~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
|++++|-..|-.++.+ -|+.|++=++..+ + +--.+.......+.+||..+.+.... .-....+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~ 383 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFEN 383 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceee
Confidence 6677776666544333 3344444333211 0 00011222233567888877764332 2233456
Q ss_pred EEEccCCCEEEEEe-CCcEEEEEc-CCCceeeee----------cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 830 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 830 l~~s~d~~~l~~~s-dg~i~vwd~-~~~~~~~~~----------~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
+++..+--.++.-. +|.|.-++. ++...+..+ ...-..|.-. |-..++.+++.++.+ .+.+|....
T Consensus 384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~-Fv~vn~~~vviAS~e-~~~iWhy~~ 461 (1189)
T KOG2041|consen 384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPK-FVCVNGICVVIASEE-RYFIWHYVL 461 (1189)
T ss_pred hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeee-EEEecceEEEEeccc-cEEEEEEec
Confidence 66665544444444 565554422 111111111 1011112111 222256677777766 678887642
Q ss_pred cee--------------------------------eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224 898 DEV--------------------------------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 945 (1120)
Q Consensus 898 ~~~--------------------------------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~ 945 (1120)
.+. ..++.|..++|.+++.+ .++|..+-..|.|.-|.+......
T Consensus 462 pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-- 537 (1189)
T KOG2041|consen 462 PKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-- 537 (1189)
T ss_pred cchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee--
Confidence 110 13445667788888886 578888999999999998874322
Q ss_pred eeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC---CceeeeccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224 946 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 946 ~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
+... ....+..+...-+...+|+ ---|.+.+.|+. +|..+..+. ..-...|+.+.|..|...|++--+
T Consensus 538 ---n~y~----~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-~~errDVWd~~Wa~dNp~llAlme 609 (1189)
T KOG2041|consen 538 ---NSYP----VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-TSERRDVWDYEWAQDNPNLLALME 609 (1189)
T ss_pred ---eccc----cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-hhhhhhhhhhhhccCCchHHhhhh
Confidence 1111 1236788999888888887 466778888775 344443322 123678999999988876665555
Q ss_pred CCcEEEEEc
Q 001224 1022 DATVCVFSA 1030 (1120)
Q Consensus 1022 Dg~v~iwd~ 1030 (1120)
-..++|++-
T Consensus 610 Ktrmyifrg 618 (1189)
T KOG2041|consen 610 KTRMYIFRG 618 (1189)
T ss_pred hceEEEecC
Confidence 555666653
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.5e-12 Score=128.04 Aligned_cols=286 Identities=12% Similarity=0.138 Sum_probs=188.4
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
.+..+..++|++.-..+++++.|-.|++|+-... ....+. ......|+|++|-|.
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst--------------------~pt~Lk-----s~sQrnvtclawRPl 151 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST--------------------CPTKLK-----SVSQRNVTCLAWRPL 151 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCCC--------------------CCceec-----chhhcceeEEEeccC
Confidence 3456788999997777889999999999974210 000111 114677999999996
Q ss_pred C-CEEEEEeCCcEEEEEcCCC----ce----------eeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeecce
Q 001224 836 D-SYVMSASGGKISLFNMMTF----KT----------MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE 899 (1120)
Q Consensus 836 ~-~~l~~~sdg~i~vwd~~~~----~~----------~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~ 899 (1120)
+ +.+++|..+.|.+|..... .. +...++| ..|++|+|.+ ||..+++++ .|..|.|||..++.
T Consensus 152 saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred CcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCC
Confidence 5 5677888889999987521 11 1112333 5799999999 787887776 56799999999988
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC-CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeC
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 978 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d 978 (1120)
.+....-..+.++-+.|||||.+|..+.-|+..++|+.. +...... ..+ .+.|...+|+|+|++|..+.-
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-----~lg----sgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-----ILG----SGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-----ecc----CCceeeeeecCCCCEEEEEEc
Confidence 765554455678899999999999999999999999543 3322221 111 137889999999999988766
Q ss_pred CeEEEEEcCCceeeecc------------------ccCC----CCCCeeEEEECCCCcEEEEEEcCC--------cEEEE
Q 001224 979 TQLAIFETTKLECVKQW------------------VPRE----SSAPITHATFSCDSQLVYACFLDA--------TVCVF 1028 (1120)
Q Consensus 979 ~~v~i~d~~~~~~~~~~------------------~~~~----h~~~v~~l~~s~dg~~l~s~~~Dg--------~v~iw 1028 (1120)
+.-++|.+.-...-..+ .... -.+++.+++|.|.|.|||+....+ .|.+|
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f 380 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF 380 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence 66666655321110000 0001 157889999999999999876443 36667
Q ss_pred EcCCcceeeeeCCCcccCCCCCCCCccceEEEecCC--CCCEEEEEeCCCcEEEEecC
Q 001224 1029 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1029 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~--d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
|....-.... .+..+..+ -.|-.++|+|. ++.+|..+=+.|.+.-+.+.
T Consensus 381 dtr~sp~vel-s~cg~i~g------e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 381 DTRKSPPVEL-SYCGMIGG------EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccccCceEE-EecccccC------CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 7554333221 11122221 22445777764 45567777777777666543
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.3e-12 Score=134.88 Aligned_cols=302 Identities=14% Similarity=0.152 Sum_probs=203.0
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
+.-+++...-+.|..+|||+|++|+|...-.|++||+..-.....+.+ ....|.-.-+|.|
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD 105 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDD 105 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccc
Confidence 445668889999999999999999999999999999976443321110 2235666667777
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
-..++.-..|.+|.+..--+ .... ++- ...-..++++.-.-. |..++....|+-++++.|..+..+....+.
T Consensus 106 ~SK~v~L~~DR~IefHak~G-~hy~----~RI-P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKYG-RHYR----TRI-PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred hhhheEeecCceeeehhhcC-eeee----eec-CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccccc
Confidence 77777777888777654332 1111 110 112233444433332 444445567899999999999999888889
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
++++.+++-. .+|++|+.+|.|.+||.+.......+..... |.+. |. +.....++.+.|+.+|-.+++
T Consensus 178 lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---pg------~~~~~svTal~F~d~gL~~aV 245 (703)
T KOG2321|consen 178 LNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---PG------GDAAPSVTALKFRDDGLHVAV 245 (703)
T ss_pred ceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCC---cc------ccccCcceEEEecCCceeEEe
Confidence 9988875433 5888888899999999998666555443322 1111 11 111225667777777778999
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC--CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224 598 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 675 (1120)
Q Consensus 598 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
|..+|.+.|||+++.+++..-. |....+|..+.|.+. +..+++ .+...++|||-.+| +....++....
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G-k~~asiEpt~~------- 315 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG-KPMASIEPTSD------- 315 (703)
T ss_pred eccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccC-CceeeccccCC-------
Confidence 9999999999999998877665 444567888999774 344544 34578999998888 33333321111
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224 676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 743 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 743 (1120)
-.+..+.+++..++++-.+..+..|-++.....
T Consensus 316 -----------------------------------lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 316 -----------------------------------LNDFCFVPGSGMFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred -----------------------------------cCceeeecCCceEEEecCCCcceeEEccccCCC
Confidence 124455678888899988888877777665443
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.7e-13 Score=141.76 Aligned_cols=282 Identities=11% Similarity=0.127 Sum_probs=214.2
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
.....+.++.+|+.++.++.-|.+..+|+.+ +.+... + .-...|..+.|-.+.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----------------------~~L~~E-i---~v~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----------------------KKLHFE-I---NVMETVRDVTFLHNEQ 183 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc----------------------ceeeee-e---ehhhhhhhhhhhcchH
Confidence 3446788999999999999999999888743 222211 1 1346688899999999
Q ss_pred EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224 838 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 838 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 917 (1120)
++|++....++|||-. |..+..++.| ..|..+.|-| ---+|++++..|.++--|+.+|+.+..+..-.+.+..|+-+
T Consensus 184 ~~AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhhhceEEEecCC-CcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 9999998999999954 5666666644 4599999999 88899999999999999999999999999888999999999
Q ss_pred cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccc
Q 001224 918 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 996 (1120)
Q Consensus 918 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~ 996 (1120)
|-+-.+-+|...|+|.+|.....+ ++.....|. ++|.++++.++|+|+|+ |.|..++|||+++...+.+..
T Consensus 261 P~NaVih~GhsnGtVSlWSP~ske-----PLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKE-----PLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcc-----hHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 999999999999999999987733 233333444 48999999999999999 799999999999888766655
Q ss_pred cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE-cCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC
Q 001224 997 PRESSAPITHATFSCDSQLVYACFLDATVCVFS-AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1075 (1120)
Q Consensus 997 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D 1075 (1120)
. .-+...++||..| +++.+....|.||. ...+..-....+....- +..|. .+.|.|- .+.|-+|...
T Consensus 333 t---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~----~~~V~--~l~FcP~-EDvLGIGH~~ 400 (545)
T KOG1272|consen 333 T---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRC----GGPVE--DLRFCPY-EDVLGIGHAG 400 (545)
T ss_pred c---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhcc----Ccccc--cceeccH-HHeeeccccC
Confidence 3 3456778888655 33445566799995 32222111111111111 12344 8999995 5789999988
Q ss_pred CcEEEEecCCCCC
Q 001224 1076 GGVHVFEPLESEG 1088 (1120)
Q Consensus 1076 g~v~vW~~~~~~~ 1088 (1120)
|--.+.-+-.||.
T Consensus 401 G~tsilVPGsGeP 413 (545)
T KOG1272|consen 401 GITSILVPGSGEP 413 (545)
T ss_pred CceeEeccCCCCC
Confidence 8888887888883
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=5.3e-13 Score=140.64 Aligned_cols=157 Identities=19% Similarity=0.273 Sum_probs=117.4
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe---------eceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
.+..|+|+.|-|-++.++.++-.+|.+++||..-.-.... ..|.+-.........+..-+.--.+.|..++
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 3589999999998888888888899999998632110000 0000100000000011111222345899999
Q ss_pred EcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 513 (1120)
Q Consensus 434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 513 (1120)
|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ ||++|+.|-.|.||.+..++.+..-+|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence 99999999999999999999999977555 3444457899999999999 899999999999999999999999999
Q ss_pred cccCeEEEeec
Q 001224 514 HEAPVYSVCPH 524 (1120)
Q Consensus 514 h~~~v~~~~~~ 524 (1120)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999986
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.7e-10 Score=125.62 Aligned_cols=480 Identities=12% Similarity=0.127 Sum_probs=277.1
Q ss_pred CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCce------------eeeeeeecccccCeEEEEEcCCCCceEEEEec
Q 001224 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~------------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s 492 (1120)
......|++|+....|+|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 455789999999999999999999999998765321 111246889999999999999888 488999
Q ss_pred CCCcEEEEECCCCceeEEe--eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224 493 DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570 (1120)
Q Consensus 493 ~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 570 (1120)
.+|.|.||-+-.|.....+ ....+.|.+++|. .+|..+.....||.|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGav----------------------------- 139 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAV----------------------------- 139 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCE-----------------------------
Confidence 9999999998887654322 2234557777774 455666666666655
Q ss_pred CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 650 (1120)
++|+-||. +||.-+- ++. ....+.|++|.+.++.+-.+|.+.+
T Consensus 140 -------------------------IVGsvdGN-RIwgKeL-------kg~----~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 140 -------------------------IVGSVDGN-RIWGKEL-------KGQ----LLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred -------------------------EEEeeccc-eecchhc-------chh----eccceeecccHHHHHhhhcCCcEEE
Confidence 33444443 4554321 100 1234778888777777777788888
Q ss_pred EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC-cccccCCCcceeeccCC
Q 001224 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESN 729 (1120)
Q Consensus 651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d 729 (1120)
+|........-....... +.. .|+..+ ..+....-+.+ .....|+...++++...
T Consensus 183 ydnqgnF~~Kl~~~c~Vn-~tg-------~~s~~~----------------~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDCEVN-GTG-------IFSNFP----------------TKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ecccccHHHhhhhceEEe-eee-------eecCCC----------------ccccceeeccCccccCCCCCCEEEEEEcC
Confidence 876544221111100000 000 011000 00111111122 22334578889999999
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 809 (1120)
|.+.+..-.+...+.... ..-.+..+.|+++|..+++++.+.... ....+..++++.+.
T Consensus 239 Gr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~-------------~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDAD-------------EPTDSNKVHFYSPY 297 (1189)
T ss_pred ceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCccccc-------------CccccceEEEeccc
Confidence 988887766544433322 236788899999999999888762210 00011122333332
Q ss_pred CCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224 810 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 889 (1120)
Q Consensus 810 ~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 889 (1120)
....-. ++. ....|++++|-..|-.+|.+-|+.|.+-+++..-.-..+. ..+.|-.+... .-..-
T Consensus 298 G~i~gt--lkv--pg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e------~TvVy~y~~~e-----~p~y~ 362 (1189)
T KOG2041|consen 298 GHIVGT--LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIE------ETVVYVYQKEE-----LPQYG 362 (1189)
T ss_pred hhheEE--Eec--CCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEee------eEEEEEEccCC-----CcceE
Confidence 222111 111 5678999999999999999999999988876321111111 11111110100 01234
Q ss_pred EEEEEeecceee-EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce-eeeccCCCCCC--CCCCcEEE
Q 001224 890 IQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR-FLQIPTGRTPT--AQSDTRVQ 965 (1120)
Q Consensus 890 v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~~~~~~--~~~i~~~~ 965 (1120)
|.+||..+.+.. +... | ..+++|+.+.-.|+.-..|+.+.-++.-........ .+...-|..-. ...|.-.-
T Consensus 363 i~Fwdtk~nek~vK~V~-~---~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~F 438 (1189)
T KOG2041|consen 363 IMFWDTKTNEKTVKTVT-H---FENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKF 438 (1189)
T ss_pred EEEEecccChhhhhhhc-c---eeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeE
Confidence 789998876532 2222 2 346788888778888888888776632111110000 01111110000 01122222
Q ss_pred EccCCcEEEEEeCCeEEEEEcCCcee-------------------------eeccc-----cCCCCCCeeEEEECCCCcE
Q 001224 966 FHQDQIHFLVVHETQLAIFETTKLEC-------------------------VKQWV-----PRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus 966 fspdg~~la~~~d~~v~i~d~~~~~~-------------------------~~~~~-----~~~h~~~v~~l~~s~dg~~ 1015 (1120)
..-++.++++++...+.+|....-+. -+++. ..+...+|..++.| .++
T Consensus 439 v~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~ 516 (1189)
T KOG2041|consen 439 VCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKF 516 (1189)
T ss_pred EEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceE
Confidence 23366777777777788887532211 01111 11346788888875 678
Q ss_pred EEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 1016 VYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1016 l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
|..+-..|.|.=|.+.+..+..+..
T Consensus 517 l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 517 LMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred EEEEeccCceEEEEecceeeeeccc
Confidence 8889999999999999887776543
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.1e-10 Score=122.60 Aligned_cols=254 Identities=15% Similarity=0.217 Sum_probs=166.2
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCC--c
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN--N 879 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~--~ 879 (1120)
.+++|+.+++......... .... ++..|+.|..+.|--..+.+.+|+..+.+.... .-|...|+.+++|| ++ .
T Consensus 106 n~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~ 180 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPP 180 (566)
T ss_pred ceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCc
Confidence 3456666664432221111 2222 588899998777666678999999987544322 22577899999999 52 3
Q ss_pred EEEE-----EeCCCcEEEEEeecceeeEee--c-ccccceEEEEEccCCCE---EEEEeCCC---------CEEEEECCC
Q 001224 880 IIAI-----GMDDSSIQIYNVRVDEVKSKL--K-GHSKRITGLAFSHALNV---LVSSGADS---------QLCVWSSDG 939 (1120)
Q Consensus 880 ~las-----g~~dg~v~vwd~~~~~~~~~l--~-~h~~~V~~l~~s~d~~~---l~s~s~Dg---------~v~iWd~~~ 939 (1120)
.+|+ ++.-+.|+||...-......+ + -....=..+.|.+-|.- |++..-|. ++.+.++++
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 4443 345568999987632211111 0 01122234677776653 33444444 577777763
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--E-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE
Q 001224 940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
.. ....... .++|.++.|+|+|+.+++ | .--.+.|||++ +..+..+. .++-.++-|+|.|++|
T Consensus 261 ~s----~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 261 ES----VSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNII 326 (566)
T ss_pred ce----EEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEE
Confidence 11 1222221 258999999999998887 4 55789999986 44444443 6677889999999998
Q ss_pred EEEEcC---CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC------CCcEEEEecCCCC
Q 001224 1017 YACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1087 (1120)
Q Consensus 1017 ~s~~~D---g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1087 (1120)
+.++-+ |.+-|||+.+.+++.++. .. ....+.|+| ||.+++|+.+ |+.++||++...-
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~--------~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFK----AA--------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccccc----cC--------CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 887754 889999999999997776 11 123689999 6999988876 6899999986543
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.1e-11 Score=124.01 Aligned_cols=326 Identities=14% Similarity=0.249 Sum_probs=204.1
Q ss_pred CCCCEEEEEeCCCeEEEEE-CCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224 590 TTKNRFLAAGDDFSIKFWD-MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 668 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 668 (1120)
|..+-+++.+.|.++++|- .+.++.-..+. +.....++++++.++.+.|++|-.+|++.-+.+..........+
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r---- 108 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK---- 108 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh----
Confidence 3334599999999999995 44555444444 22345688999999999999999999998887654321111110
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224 669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 748 (1120)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 748 (1120)
.|
T Consensus 109 -----------------------------------------------------------------~~------------- 110 (404)
T KOG1409|consen 109 -----------------------------------------------------------------DY------------- 110 (404)
T ss_pred -----------------------------------------------------------------hh-------------
Confidence 00
Q ss_pred eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224 749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 828 (1120)
Q Consensus 749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 828 (1120)
..|...+..+.|+-....+++.+.|..+. |-.. +.|..+..-. .....+
T Consensus 111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~---------------------e~~~~lg~Y~----~~~~~t 159 (404)
T KOG1409|consen 111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT---------------------ESGNRLGGYN----FETPAS 159 (404)
T ss_pred -----hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------------ccCCcccceE----eeccCC
Confidence 23778888999998888899999886654 3221 1111100000 001111
Q ss_pred EEEEccCCCEEEEEe-CCcEEEEEc--CCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeEee
Q 001224 829 CFALSKNDSYVMSAS-GGKISLFNM--MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKL 904 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l 904 (1120)
++.+.-. +...|. .|.|.+-.+ .....+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+...+ ....+
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 334444 455444433 34567788999999999999999 88999999999999999997643 34678
Q ss_pred cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeee-------------------------ccCCCCCCCC
Q 001224 905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------------------------IPTGRTPTAQ 959 (1120)
Q Consensus 905 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-------------------------~~~~~~~~~~ 959 (1120)
.+|...|..+...+--+.|++++.||.|.+|+++.........+. ....|-...+
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg 316 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCG 316 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 899999999999988999999999999999998864332211100 0001100000
Q ss_pred -CCcEEEEccCCcEEEEEeCCeEEEEEcCCce-----eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 960 -SDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 960 -~i~~~~fspdg~~la~~~d~~v~i~d~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
.+-..+-+....+...+..-.+++.|.-... ......++.-...|+.+.+-.+-.+|++++.|..|+|||+..
T Consensus 317 ~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 317 KAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111222222223333444556655532111 100111111245689999988888999999999999999764
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=131.28 Aligned_cols=281 Identities=12% Similarity=0.168 Sum_probs=202.4
Q ss_pred CCCCcccccCCCccee-eccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeec
Q 001224 709 GMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 787 (1120)
Q Consensus 709 ~~~~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 787 (1120)
..+..+..++||.+++ +|...-.|++||+.... +.+...-....|.-..++.|-..++....|..|.+...
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccce-------eeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence 3355677889998865 66677899999998643 22222223445555666677666777777777665321
Q ss_pred ccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc-cCCCEEEEEeCCcEEEEEcCCCceeeeecCCCC
Q 001224 788 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPP 866 (1120)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~ 866 (1120)
-|.-....+ ...-..++++ |...++++|+...|+-++++.|..+..+....+
T Consensus 124 ----------------------~G~hy~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 124 ----------------------YGRHYRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred ----------------------cCeeeeeec-----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc
Confidence 121111101 1122334443 344566666678899999999999999988889
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc------ccc-----ceEEEEEccCCCEEEEEeCCCCEEEE
Q 001224 867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSK-----RITGLAFSHALNVLVSSGADSQLCVW 935 (1120)
Q Consensus 867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~------h~~-----~V~~l~~s~d~~~l~s~s~Dg~v~iW 935 (1120)
.++++..++ -..+|++|+.+|.|..||.++...+..+.. |.+ .|+++.|+.||-.+++|..+|.|.||
T Consensus 177 ~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 177 ELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY 255 (703)
T ss_pred cceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence 999999999 778999999999999999988766655532 333 49999999999999999999999999
Q ss_pred ECCCcccccceeeeccCCCCCCCCCCcEEEEccC--CcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCC
Q 001224 936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 1013 (1120)
Q Consensus 936 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd--g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg 1013 (1120)
|+.+.+. ...+.... ..+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|+-|++
T Consensus 256 DLRa~~p---l~~kdh~~----e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s 325 (703)
T KOG2321|consen 256 DLRASKP---LLVKDHGY----ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS 325 (703)
T ss_pred EcccCCc---eeecccCC----ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence 9998442 12222222 247889999775 5566667777899999999998877764 5569999999999
Q ss_pred cEEEEEEcCCcEEEEEcCCcce
Q 001224 1014 QLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 1014 ~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
.++++|.+++.+..|=+...-+
T Consensus 326 Gm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ceEEEecCCCcceeEEccccCC
Confidence 9999999988888776655433
No 232
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.42 E-value=1.4e-12 Score=125.56 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=127.7
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---------HHHHHHHHhccCHHHHHHHhcccc--cccCcccchhh
Q 001224 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI 72 (1120)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~ 72 (1120)
-.+|+.|||++||-..||.++|+.+..|+|+... ...+|.+|..|+.++|++.+.++. .++.+ + .+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-EL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-hH
Confidence 4678999999999999999999999999999771 568899999999999999999993 33333 2 39
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccCCC--chHHHHHHHHHHHhh
Q 001224 73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKL 150 (1120)
Q Consensus 73 ~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~ 150 (1120)
.|.+.+|+++|+++.+..++|+.|+|++|.|+...+++.++.|...|..--++..+. ..... ....|.++.+.+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~-sp~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQE-SPSAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCccc-CcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999878878777777655433332111 11111 245688888888777
Q ss_pred cccCCCcccccCCCCCcchHHHHHHHHHHHHHH
Q 001224 151 IEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183 (1120)
Q Consensus 151 i~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~ 183 (1120)
|-...- . -...+|..||+.-+..|.
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHHH
Confidence 654222 0 013478888865555553
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=4.1e-11 Score=119.70 Aligned_cols=183 Identities=16% Similarity=0.282 Sum_probs=123.6
Q ss_pred ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-----eeEEeecccc------------CeEEEeeccCCCceEEE
Q 001224 471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEA------------PVYSVCPHHKENIQFIF 533 (1120)
Q Consensus 471 ~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~~~~l~ 533 (1120)
.+-|.+|.|..+|. +|+||..+|.|.++.-.... ....++.|.. .|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45789999999999 79999999999999743222 2334444543 46777888888888888
Q ss_pred EEecCCeEEEEecCCCCCce-----eeeCCCCceeEEEEc----------CCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 534 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYS----------ADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 534 s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s----------~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
..+.|++|++|.+....... ........++++... ...++++...+.--+..++++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88999999999887543322 111112222222221 112256666666788899999999888776
Q ss_pred eCCCeEEEEECCCCc-eeEEE--ecCC---CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCc
Q 001224 599 GDDFSIKFWDMDSVQ-LLTSI--DADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~-~~~~~--~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
. |=.|.+|+++--. ..... +.+. -+.-|++..|+| ...+++-.+..|+|++.|++..
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 4 6789999986432 22222 2111 123478899999 4567777888999999998754
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=6.7e-13 Score=137.46 Aligned_cols=231 Identities=16% Similarity=0.249 Sum_probs=184.5
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
-....+.|+.+|++ ++.|+..|.|..+|+.+++...... -...|.++.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence 34567899999997 7777888999999999988765422 23478999999999999987
Q ss_pred ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 524 (1120)
- ...+.|||-.+-+ +. .+..| ..|..+.|.|..- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+
T Consensus 189 Q-K~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred h-hceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 5 4569999976533 44 34444 5799999999866 89999999999999999999999998888888888865
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 604 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 604 (1120)
|- +..+-+|...|+|.+|.....+++..+..|.++|.++++.++|. ++++.+.|..+
T Consensus 261 P~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~---------------------YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 261 PY--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR---------------------YMATTGLDRKV 317 (545)
T ss_pred Cc--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc---------------------EEeecccccce
Confidence 43 36888999999999999999999888888888888777777775 89999999999
Q ss_pred EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
+|||++....+.++... .....+++|..|. ||. +....+.+|.
T Consensus 318 kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkgl-LA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 318 KIWDLRNFYQLHTYRTP---HPASNLSLSQKGL-LAL-SYGDHVQIWK 360 (545)
T ss_pred eEeeeccccccceeecC---CCccccccccccc-eee-ecCCeeeeeh
Confidence 99999988877766542 2467788887663 333 3445788994
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=4.3e-11 Score=136.73 Aligned_cols=222 Identities=9% Similarity=0.021 Sum_probs=139.0
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeC--CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
..+..+...+.+.+|||||+.|+.+... +..|.+|++.+|+... +....+.+...+||
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~S 251 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFS 251 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEEC
Confidence 3344567789999999999975554432 3579999998876433 12223335568999
Q ss_pred CCCCeEEEE-ECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC-CCc--EEEEECCCCceeE
Q 001224 436 PDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKT--IKVWDATNGAKQY 509 (1120)
Q Consensus 436 pdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-d~~--i~vwd~~~~~~~~ 509 (1120)
|||++|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+. |+..+. ++. |.++|+.++.. .
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~ 324 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-Q 324 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-E
Confidence 999999875 4444 58899999876433 4445567889999999995 544443 444 44556666654 3
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
.+..+.......+|+ ++|++|+..+.+ ..|.+||+.++... .+... ..... .
T Consensus 325 ~lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~---------------------p 379 (429)
T PRK03629 325 RITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDET---------------------P 379 (429)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCC---------------------c
Confidence 443344444556664 556777665543 35778888765322 12111 11112 3
Q ss_pred EEcCCCCEEEEEeCCCe---EEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 587 QFDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 587 ~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
.|+|||..++.++.++. +.++++ +|.....+..+. ..+...+|+|
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 45666667887776654 777787 455556665433 3577788887
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=4.9e-10 Score=111.44 Aligned_cols=238 Identities=14% Similarity=0.175 Sum_probs=159.1
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE-E
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A 444 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las-~ 444 (1120)
....++|+.|.. -+++|.. .-.+||+++.-+...++.+ +.+.+.-+..---.++||- |
T Consensus 7 ~~lsvs~NQD~S-cFava~~-~Gfriyn~~P~ke~~~r~~-------------------~~~G~~~veMLfR~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVATD-TGFRIYNCDPFKESASRQF-------------------IDGGFKIVEMLFRSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEEec-CceEEEecCchhhhhhhcc-------------------ccCchhhhhHhhhhceEEEec
Confidence 344599999988 3666654 5578999876443222111 1111111111112345554 3
Q ss_pred ECC------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCceeEEeeccc--
Q 001224 445 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE-- 515 (1120)
Q Consensus 445 ~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h~-- 515 (1120)
|.+ ..|.|||=...+++. ++. ...+|.+|.+.++- ++.. ..+.|.||... +.+.++.+....
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCC
Confidence 322 469999955544443 332 45789999998763 3333 35789999988 566777665433
Q ss_pred cCeEEEeeccCCCceEEEEEe-cCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 516 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
....+++ +..+..+|+.-| .-|.|++-|+..... ...+..|...|.+++++-+|
T Consensus 137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G--------------------- 193 (346)
T KOG2111|consen 137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG--------------------- 193 (346)
T ss_pred CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc---------------------
Confidence 3344444 444545666554 358999999876554 35556666655555555555
Q ss_pred CEEEEEeCCCe-EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 593 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 593 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..++++|..|+ |||||..+|..+..+........|.+++|||+..+|+++++-|+++|+.+...
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 58999999888 89999999999999986666678999999999999999999999999998764
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.3e-11 Score=138.60 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=138.8
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeC--CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
.+...+..+...+.+.+|||||++|+.+... +..|.+||+.+++... +..+.+...+.
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~ 253 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAP 253 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCc
Confidence 3444555678889999999999975544333 3469999998876543 22334455688
Q ss_pred EEcCCCCeEEE-EECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec-CCCc--EEEEECCCCc
Q 001224 433 IWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGA 506 (1120)
Q Consensus 433 ~~spdg~~las-~~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s-~d~~--i~vwd~~~~~ 506 (1120)
+|||||++|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||++ ++..+ .++. |.++|+.+++
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence 99999998874 45555 5999999988643 35556666678999999995 44444 4444 6777777766
Q ss_pred eeEEeeccccCeEEEeeccCCCceEEEEEecCC---eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
... +..+.......+|+ ++|++|+..+.++ .|.+||+.++... .+. +........
T Consensus 328 ~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~----------------- 385 (433)
T PRK04922 328 AER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS----------------- 385 (433)
T ss_pred eEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce-----------------
Confidence 433 32233334456765 4556777655432 6889998765432 221 111222334
Q ss_pred eEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 584 GVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
|+|+|+.++..+. .+.|.++++.. .....+..+. ..+...+|+|
T Consensus 386 ----~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 386 ----FAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred ----ECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 4455555655443 34688888854 4444444322 2456677776
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=4.1e-10 Score=125.06 Aligned_cols=280 Identities=15% Similarity=0.178 Sum_probs=174.8
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc----CceEEEeeecccccCCCCccccccCcee
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS----NAIHLLWKWQRTERNSSGKATASVAPQL 805 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 805 (1120)
+.|.+|+++..... +..+.. .........++++|++++|.+... ++.|..|++...
T Consensus 13 ~gI~~~~~d~~~g~--l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~---------------- 72 (345)
T PF10282_consen 13 GGIYVFRFDEETGT--LTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD---------------- 72 (345)
T ss_dssp TEEEEEEEETTTTE--EEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred CcEEEEEEcCCCCC--ceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence 67888888432211 111110 113345567889999999988876 468888876432
Q ss_pred ecCCCCCccccc-CCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCC-Cceeee---e----------cCCCCCe
Q 001224 806 WQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAA 868 (1120)
Q Consensus 806 w~~~~g~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i 868 (1120)
+|.+.... ... .......++++|++++++++. +|.|.++++.. +..... + .......
T Consensus 73 ----~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~ 146 (345)
T PF10282_consen 73 ----TGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP 146 (345)
T ss_dssp ----TTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred ----cceeEEeeeecc--CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence 12211100 000 234556799999999999997 79999999986 333222 1 1123457
Q ss_pred EEEEEecCCCcEEEEEe-CCCcEEEEEeecce--ee--Eeec-ccccceEEEEEccCCCEEEEE-eCCCCEEEEECC--C
Q 001224 869 TFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSD--G 939 (1120)
Q Consensus 869 ~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd~~--~ 939 (1120)
.++.|+| +++++++.. ....|++|++.... +. ..+. .....-..++|+||++++... -.+++|.++++. .
T Consensus 147 H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 147 HQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence 8999999 888777654 33489999997654 22 2222 233456789999999988655 457789999998 4
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--Cce--eeeccccCCCCCCeeEEEECCCC
Q 001224 940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVPRESSAPITHATFSCDS 1013 (1120)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~--~~~~~~~~~h~~~v~~l~~s~dg 1013 (1120)
+.......+...............++++|||++|.++ ..+.|.+|++. ++. .+..+.. .......++++|||
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDG 303 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTS
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCC
Confidence 4333333333332222111256789999999999996 56789999993 233 3333332 24458999999999
Q ss_pred cEEEEEEc-CCcEEEEEc--CCcceeee
Q 001224 1014 QLVYACFL-DATVCVFSA--ANLKLRCR 1038 (1120)
Q Consensus 1014 ~~l~s~~~-Dg~v~iwd~--~~~~~~~~ 1038 (1120)
++|+++.. ++.|.+|++ .+|.+...
T Consensus 304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 99998885 468999976 57776543
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.6e-10 Score=132.02 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=134.6
Q ss_pred CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001224 387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 463 (1120)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---dg~v~iwd~~~~~~~~~ 463 (1120)
..|.+||.+.+.... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~ 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence 368889887654322 3446678999999999999997643 457999999988633 2
Q ss_pred eeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CCe
Q 001224 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 540 (1120)
Q Consensus 464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~ 540 (1120)
+....+.+..++|+|||+. ++++.+.++ .|++||+.+++... +..+...+....|++ +|+.|+..+. ++.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP--DSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC--CCCEEEEEeCCCCC
Confidence 2223334557899999996 333334444 58999998887654 333445566677754 5567766654 455
Q ss_pred EEEE--ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCcee
Q 001224 541 IKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 615 (1120)
Q Consensus 541 i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 615 (1120)
..+| |+.++. ...+........ ...|+|+|++++..+.+ ..|.+||+.+++..
T Consensus 311 ~~Iy~~d~~~g~-~~~lt~~~~~~~---------------------~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 311 PQVYKVNINGGA-PQRITWEGSQNQ---------------------DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred ceEEEEECCCCC-eEEeecCCCCcc---------------------CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 5555 444322 122222222222 34455555666665432 45889999888643
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECCCc---EEEEEcc
Q 001224 616 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS 654 (1120)
Q Consensus 616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~ 654 (1120)
.+.... ......|+|||++|+.++.++. +.++++.
T Consensus 369 -~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 369 -VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred -EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 333221 2346889999999999988765 5666663
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.8e-11 Score=137.47 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=135.4
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
.+...+..+...+.+.+|||||+.|+.+...+ ..|.+||+.+++... +....+.+.+.
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~ 245 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAP 245 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence 33445556888999999999999755444333 359999999886543 22233456789
Q ss_pred EEcCCCCeEEE-EECCCeEEEEEc--cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC--CCCce
Q 001224 433 IWSPDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAK 507 (1120)
Q Consensus 433 ~~spdg~~las-~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~--~~~~~ 507 (1120)
+|||||+.|+. .+.+|...||.+ .++. .+ .+..+.+.+....|+|||+. ++++...++...||.+ .++..
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce
Confidence 99999999875 567787666654 4443 22 35556666778899999995 2334434566666654 44443
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecCC---eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
..+..+........|+ ++|++|+..+.++ .|.+||+.+++... +.. ........
T Consensus 321 -~~lt~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~------------------ 377 (427)
T PRK02889 321 -QRVTFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPS------------------ 377 (427)
T ss_pred -EEEecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCce------------------
Confidence 2222222233345664 5667887766544 68999987654322 211 11123334
Q ss_pred EEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 585 VVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
|+|+++.|+.++.++ .+.+.+. ++.....+..+.+ .+...+|+|
T Consensus 378 ---~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 378 ---FAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred ---ECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 455555666655332 3555566 4555555543322 466678876
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.7e-10 Score=133.00 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=140.3
Q ss_pred CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001224 387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 463 (1120)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---dg~v~iwd~~~~~~~~~ 463 (1120)
..|.+||....... .+..|...+.+.+|||||++|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 47888888654432 25567889999999999999998764 468999999988643
Q ss_pred eeeecccccCeEEEEEcCCCCceEEEEecCCCc--EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CC-
Q 001224 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 539 (1120)
Q Consensus 464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg- 539 (1120)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+ ++|+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 25556677889999999996 4456666655 77789887765 4455565556666775 45567766653 33
Q ss_pred -eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCcee
Q 001224 540 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 615 (1120)
Q Consensus 540 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 615 (1120)
.|.+||+..... ..+......+.. ..|+|+|+.++..+.+ ..|.+||+.++..
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~---------------------~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYST---------------------PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccC---------------------eEECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 577777654322 222212222223 4455555566665432 3688889865543
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECC------CcEEEEEccCc
Q 001224 616 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 656 (1120)
Q Consensus 616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~ 656 (1120)
..+... . .+..+.|+|||+.|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333322 1 36778999999998876553 24667776544
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.4e-09 Score=111.01 Aligned_cols=282 Identities=9% Similarity=0.092 Sum_probs=185.0
Q ss_pred CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC---ceEEEeeecccccCCCCccccccCcee
Q 001224 729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 805 (1120)
Q Consensus 729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 805 (1120)
+.-|.+|++.+.........+ .......+-++++|+.+.|.++..+ |.|.-|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 467999999843221111111 2356788899999999988887664 56666654
Q ss_pred ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCC-Cceeee--ecCCCCC----------eEE
Q 001224 806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 870 (1120)
Q Consensus 806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 870 (1120)
|..+|++....-.. ....+.+.++++++|++++++. .|.|.++-+.. |..... ...|.+. +.+
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 44445432211100 1233448899999999999998 68999999965 433211 1223333 788
Q ss_pred EEEecCCCcEEEEEeC-CCcEEEEEeecceeeEeec---ccccceEEEEEccCCCEEEEEe-CCCCEEEEECCC--cccc
Q 001224 871 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQ 943 (1120)
Q Consensus 871 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~--~~~~ 943 (1120)
..|.| ++++|++.+- --.|.+|++..|++...-. .....-..|.|+|++++....+ -+++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 8888887653 2379999999776442211 2334457899999999876555 489999999988 3333
Q ss_pred cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEEEcCCcee-eecc-ccCCCCCCeeEEEECCCCcEEEEE
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETTKLEC-VKQW-VPRESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--d~~v~i~d~~~~~~-~~~~-~~~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
..+.+...+...........+..++||++|.++. ...|.+|.+....- +... ....+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 3333434433333345678899999999999973 44788888764321 2111 112334557889999999999999
Q ss_pred EcCC-cEEEEEc--CCccee
Q 001224 1020 FLDA-TVCVFSA--ANLKLR 1036 (1120)
Q Consensus 1020 ~~Dg-~v~iwd~--~~~~~~ 1036 (1120)
.+++ .|.||.. .+|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8774 5888866 455554
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=6.5e-10 Score=123.46 Aligned_cols=252 Identities=14% Similarity=0.212 Sum_probs=162.7
Q ss_pred CCCccEEEEccCCCEEEEEeC-----CcEEEEEcCCC--c--eeeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001224 824 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 893 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~sd-----g~i~vwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 893 (1120)
......++++|++++|.+... +.|..|++... + .+............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 445667999999999998862 57888887653 3 2333333445677899999 777777765 68999999
Q ss_pred Eeec-ceeeEe---ec----------ccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCccc--ccceeeeccCCCCC
Q 001224 894 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEK--QKNRFLQIPTGRTP 956 (1120)
Q Consensus 894 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~--~~~~~~~~~~~~~~ 956 (1120)
++.. +.+... +. .-.....++.|+|||++|++... ...|.+|+++.... .....+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433322 21 11244678999999998887643 34699999987552 22223333444
Q ss_pred CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--Ccee--eecccc--CCC--CCCeeEEEECCCCcEEEEEE-cCCcE
Q 001224 957 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVP--RES--SAPITHATFSCDSQLVYACF-LDATV 1025 (1120)
Q Consensus 957 ~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~~--~~~~~~--~~h--~~~v~~l~~s~dg~~l~s~~-~Dg~v 1025 (1120)
...+.++|+|+|+++.+. .++.|.+|++. ++.. +..+.. .+. ......|+++|||++|+++. .+..|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 355999999999999885 56789999988 4432 222211 111 23688999999999988776 45789
Q ss_pred EEEEcC--CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe-CCCcEEEEecCCCCCCC
Q 001224 1026 CVFSAA--NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus 1026 ~iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~-~Dg~v~vW~~~~~~~~~ 1090 (1120)
.+|+++ ++++.. +. ..+. ....|..++++| |+++|+++. .++.|.+|++....+.|
T Consensus 270 ~vf~~d~~~g~l~~-~~---~~~~----~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 270 SVFDLDPATGTLTL-VQ---TVPT----GGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEEECTTTTTEEE-EE---EEEE----SSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEEecCCCceEE-EE---EEeC----CCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 999993 344432 22 1221 114567899999 578777665 66799999986544433
No 244
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.38 E-value=1.2e-07 Score=116.49 Aligned_cols=536 Identities=13% Similarity=0.152 Sum_probs=286.6
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEE----ecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
..+.|.++.|-++... ++.+..+|.|.+. +..+.+.- +.+.-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 4588999999999985 7888889999999 55544332 233456689999999999
Q ss_pred CeEEEEECCCeEEEEEcc----C---------C--cee--------eee----------------------eeecccccC
Q 001224 439 SLFGVAYSRHIVQIYSYH----G---------G--DEV--------RQH----------------------LEIDAHVGG 473 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~----~---------~--~~~--------~~~----------------------~~l~~h~~~ 473 (1120)
..||..+.++++.+-+-. . | +.+ .++ ..+. +.+.
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999988875421 0 0 000 000 0111 3335
Q ss_pred eEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec---CCeEEEE
Q 001224 474 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 544 (1120)
Q Consensus 474 V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw 544 (1120)
-..|+|-.||+ |+|+.+. -+.+|||+ +.|....+-..-.+--.+++|- |.|++|++... ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~Wr--PsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWR--PSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCC--CCCCEEEEEEEcCCCcEEEEE
Confidence 56789999999 5666553 25799999 6677665554333334456764 55578887764 3456666
Q ss_pred ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCC
Q 001224 545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG 622 (1120)
Q Consensus 545 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 622 (1120)
.-+..+ ...+. +.+.+++ ..+..+.|++++..|+....|. |.+|-..+.... +.+....
T Consensus 287 ErNGLr-hgeF~--------l~~~~~~---------~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNGLR-HGEFT--------LRFDPEE---------EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCCcE-eeeEe--------cCCCCCC---------ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 433211 11111 1111111 2445566666666777766554 999998876532 3333222
Q ss_pred CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224 623 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 701 (1120)
Q Consensus 623 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1120)
. ..+..+.|+| +...|.+.+.+|.+..++..-.... +. .
T Consensus 348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~-----s~-------------~--------------------- 387 (928)
T PF04762_consen 348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR-----SP-------------G--------------------- 387 (928)
T ss_pred C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe-----cC-------------C---------------------
Confidence 1 2355599999 5667888888788876654321000 00 0
Q ss_pred ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccc--eeeccCCccccccEEEEEEcCCCceEEEeccCc
Q 001224 702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC--RSLRLPENLRATKISRLIFTNSGNAILALASNA 779 (1120)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 779 (1120)
..++..-.+..-...++++-.+.....+... ..+. -...|..++|++++..+++...||
T Consensus 388 --------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 388 --------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred --------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCC
Confidence 0011111111112234555444443333333 3333 346899999999998899999999
Q ss_pred eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-C---CcEEEEEcCCC
Q 001224 780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTF 855 (1120)
Q Consensus 780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-d---g~i~vwd~~~~ 855 (1120)
.+.+|.+................+ ....... .........+..++|..+...++... + ..+.+++....
T Consensus 449 ~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 449 SLSIYEWDLKNMWSVKPPKLLSSI-----SLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred CEEEEEecCCCcccccCcchhhhc-----ccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 999998654322110000000000 0000000 00001345677888888887777665 3 46888887433
Q ss_pred c---eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eEeecccccceEEEEEccCCC---EEEEEeC
Q 001224 856 K---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGA 928 (1120)
Q Consensus 856 ~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~ 928 (1120)
. .......-.+.+..+...+ +...++.-..+|.|...+...... +..|...-.. ..+....+.. .++.-+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~ 599 (928)
T PF04762_consen 522 ENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSS 599 (928)
T ss_pred CCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECC
Confidence 2 2222332344455555555 444466677789888666544321 1222221111 2222222222 3444444
Q ss_pred CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC-ceeeeccccCCC----CCC
Q 001224 929 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES----SAP 1003 (1120)
Q Consensus 929 Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~-~~~~~~~~~~~h----~~~ 1003 (1120)
.|.+.+ +. ..+. ..+++++++ +..+|.+.....++..++.. -....... ..+ ...
T Consensus 600 ~~~Ly~---n~------~~la---------~~~tSF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~ 659 (928)
T PF04762_consen 600 NGRLYA---NS------RLLA---------SNCTSFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDER 659 (928)
T ss_pred CCEEEE---CC------EEEe---------cCCceEEEE-cCEEEEEecCceEEEEECcCchhhccccc-Cccccccccc
Confidence 444432 11 1111 245666663 33344446677788888871 11111110 000 111
Q ss_pred eeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224 1004 ITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
+.. -.-|..|+++-....=-|..+.-|.+
T Consensus 660 ~R~---VERGsriVt~vp~~~~vVLQmPRGNL 688 (928)
T PF04762_consen 660 CRR---VERGSRIVTAVPSDTSVVLQMPRGNL 688 (928)
T ss_pred ccc---CccCCEEEEEeCCCceEEEEcCCCch
Confidence 222 23566777666444555567766655
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5e-11 Score=121.58 Aligned_cols=276 Identities=10% Similarity=0.113 Sum_probs=175.7
Q ss_pred cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE------eeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 470 h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
....|..++|..|++.-+++.++.|..+..+++....+... .....++|..+.. .| ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~d-g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---AD-GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cC-CEEEEEecCCcEEE
Confidence 34578889998887765677776888888888877666544 3445667776653 33 37888899999999
Q ss_pred EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC-EEEEEeCC--CeEEEEECCCCceeEEEec
Q 001224 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDD--FSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~ 620 (1120)
|....... |.....-++.. ..+..+.-++... .+++|+.. ..+.|||+...+.+..-+.
T Consensus 130 ~~~k~~d~------hss~l~~la~g------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 130 RHDKSGDL------HSSKLIKLATG------------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred EeccCCcc------ccccceeeecC------------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence 98874321 01111111111 1222333333333 44558888 8899999988855444321
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001224 621 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 700 (1120)
Q Consensus 621 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1120)
. |+.. -+=.|.+|+..-.
T Consensus 192 v------------pnD~------L~LrVPvW~tdi~-------------------------------------------- 209 (412)
T KOG3881|consen 192 V------------PNDR------LGLRVPVWITDIR-------------------------------------------- 209 (412)
T ss_pred C------------CCcc------ccceeeeeeccce--------------------------------------------
Confidence 1 1111 1224566653211
Q ss_pred cccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCC--CceEEEeccC
Q 001224 701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASN 778 (1120)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~~d 778 (1120)
|-+. ...+++++.-
T Consensus 210 ----------------------------------------------------------------Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 210 ----------------------------------------------------------------FLEGSPNYKFATITRY 225 (412)
T ss_pred ----------------------------------------------------------------ecCCCCCceEEEEecc
Confidence 0000 1225555555
Q ss_pred ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224 779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 857 (1120)
Q Consensus 779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~ 857 (1120)
+.+++||.+. ++.....+.. ...+++++...|+++++++|. -|.+..||+.++..
T Consensus 226 hqvR~YDt~~----------------------qRRPV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 226 HQVRLYDTRH----------------------QRRPVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeEEEecCcc----------------------cCcceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 5555554421 1100000111 467789999999999999998 79999999999988
Q ss_pred eee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC
Q 001224 858 MAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 919 (1120)
Q Consensus 858 ~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 919 (1120)
... +.+..+.|+++..+| ...+||+++-|..|||+|+.+.+++....- .+.+++|.+.++
T Consensus 282 ~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred eccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 876 888999999999999 889999999999999999999776655432 234566666544
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=133.28 Aligned_cols=215 Identities=13% Similarity=0.132 Sum_probs=137.2
Q ss_pred CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeee
Q 001224 387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ 463 (1120)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~ 463 (1120)
..|.+||...+.... +..|...+.+.+|||||++|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468899986543321 44567789999999999999988743 469999999886432
Q ss_pred eeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCCe
Q 001224 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK 540 (1120)
Q Consensus 464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~ 540 (1120)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ ++|+.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3344455668899999996 344555555 599999988875 4455555555566775 4556776665 3455
Q ss_pred --EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCcee
Q 001224 541 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLL 615 (1120)
Q Consensus 541 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~ 615 (1120)
|.++++.+++. ..+........ ..+|+|+|++++..+.++ .|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~---------------------~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNA---------------------RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCcc---------------------CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 55555544322 11111111122 345556666676654332 6999999887754
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccC
Q 001224 616 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 655 (1120)
Q Consensus 616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 655 (1120)
.+. +.. ......|+|||++++..+.+ +.+.+++...
T Consensus 374 -~Lt-~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLT-PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECC-CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 333 221 24567999999988877653 3566676643
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2e-09 Score=115.40 Aligned_cols=195 Identities=8% Similarity=0.178 Sum_probs=130.4
Q ss_pred CCCCccEEEEccCCC--EEEEE---eC---CcEEEEEcCCCceeeeec--C-CCCCeEEEEEecCCCcEEEEEeC-----
Q 001224 823 PEEAVPCFALSKNDS--YVMSA---SG---GKISLFNMMTFKTMATFM--P-PPPAATFLAFHPQDNNIIAIGMD----- 886 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~--~l~~~---sd---g~i~vwd~~~~~~~~~~~--~-~~~~i~~l~~sp~d~~~lasg~~----- 886 (1120)
|...|+.+.+||.+. .+|+- .+ +.++||..........+. . ....-..+.|.+-+..+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 667788888988743 44442 12 569999876222111110 0 11223456677633334443332
Q ss_pred ------CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEE--EeCCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224 887 ------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS--SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 958 (1120)
Q Consensus 887 ------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 958 (1120)
..++++.+++..++.-.+. -.++|.++.|+++++.++. |-.=..+.|+|++. ........|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~eg----- 312 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPEG----- 312 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCCCC-----
Confidence 2367888877434443343 4789999999999976654 44567799999887 234444444
Q ss_pred CCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc------CCcEEEE
Q 001224 959 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVF 1028 (1120)
Q Consensus 959 ~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------Dg~v~iw 1028 (1120)
+-.++-|+|.|++++.+ -.|.+.|||+.+.+++..+. ...-+-+.|+|||++++|++. |..++||
T Consensus 313 -pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 313 -PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred -CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 34789999999999884 23789999999988888776 345667899999999998874 7889999
Q ss_pred EcCCc
Q 001224 1029 SAANL 1033 (1120)
Q Consensus 1029 d~~~~ 1033 (1120)
++...
T Consensus 388 hytG~ 392 (566)
T KOG2315|consen 388 HYTGS 392 (566)
T ss_pred EecCc
Confidence 97643
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=5.7e-11 Score=118.68 Aligned_cols=155 Identities=11% Similarity=0.207 Sum_probs=108.6
Q ss_pred EEEEEecCCCcEEEEEeC----------CCcEEEEEeec-ceeeEeecc-cccceEEEEEccCCCEEEE--EeCCCCEEE
Q 001224 869 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVS--SGADSQLCV 934 (1120)
Q Consensus 869 ~~l~~sp~d~~~lasg~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s--~s~Dg~v~i 934 (1120)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|. |..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6655554332 13455665533 223344432 3457999999999998754 446789999
Q ss_pred EECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcCCceeeeccccCCCCCCeeEEEEC
Q 001224 935 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 1010 (1120)
Q Consensus 935 Wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s 1010 (1120)
||++. .... .... ..+..+.|||+|++|++++ .|.+.+||..+.+.+.... ...++.++||
T Consensus 88 yd~~~-----~~i~-~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKG-----KKIF-SFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCcc-----cEeE-eecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 99963 1122 2222 2567899999999999953 4679999999998887754 3457999999
Q ss_pred CCCcEEEEEEc------CCcEEEEEcCCcceeeeeC
Q 001224 1011 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1011 ~dg~~l~s~~~------Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
|||++|+++.. |..++||+.. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999985 66665543
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=4.4e-07 Score=111.56 Aligned_cols=521 Identities=13% Similarity=0.141 Sum_probs=274.0
Q ss_pred CCceEEEEecCCCeEEEEEe-CCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 365 SSPMSMDFHPVQQTLLLVGT-NVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
..+...+|.+....++++-+ ... .|.+......... ..+--|+... .....+.|.++.|-++...|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~~~---------~~~~~~~ivs~~yl~d~~~l 90 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSV--EVLASWDAPL---------PDDPNDKIVSFQYLADSESL 90 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCce--eEEEeccccC---------CcCCCCcEEEEEeccCCCcE
Confidence 46777888887765444333 322 3444443332211 1111111110 12345789999999999999
Q ss_pred EEEECCCeEEEE----EccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE--------
Q 001224 442 GVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-------- 509 (1120)
Q Consensus 442 as~~~dg~v~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~-------- 509 (1120)
+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +++....++++.+-+ ++-..+.
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt-~~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLMT-RDFDPISEVPLDSDD 163 (928)
T ss_pred EEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEEe-ccceEEEEeecCccc
Confidence 999999999999 554433 22 1223457899999999999 455555567766543 2221111
Q ss_pred ----------------EeeccccC------------------e----EEEeeccCCCceEEEEEec---C---CeEEEEe
Q 001224 510 ----------------IFEGHEAP------------------V----YSVCPHHKENIQFIFSTAL---D---GKIKAWL 545 (1120)
Q Consensus 510 ----------------~~~~h~~~------------------v----~~~~~~~~~~~~~l~s~~~---d---g~i~iwd 545 (1120)
.|.|..+. + ..+.++..+||.+++..+. . +.+|+|+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 11111000 0 1122334678888887764 2 4688886
Q ss_pred cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEEecC-
Q 001224 546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDAD- 621 (1120)
Q Consensus 546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~- 621 (1120)
-+ +.+... ..++. +--..++|-|.|+.+++... ...|.+|.- +|-.-..+...
T Consensus 244 Re--G~L~st---SE~v~-----------------gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 244 RE--GELQST---SEPVD-----------------GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred CC--ceEEec---cccCC-----------------CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 54 111111 11111 11224566666777777543 455677764 44433333322
Q ss_pred -CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001224 622 -GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 700 (1120)
Q Consensus 622 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1120)
.....|..+.|++|+..|++...|. |.+|-..+..-.++.-
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe------------------------------------- 342 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE------------------------------------- 342 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE-------------------------------------
Confidence 2334689999999999999988655 9999876552111110
Q ss_pred cccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCC-ceEEEeccCc
Q 001224 701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNA 779 (1120)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg 779 (1120)
+.++ ....+..+.|+|.. ..+...+.+|
T Consensus 343 ------------------------------------------------i~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 343 ------------------------------------------------IRFS---SSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred ------------------------------------------------EEcc---CCCCCCceEECCCCCCEEEEEecCC
Confidence 0000 11122236666643 3466666667
Q ss_pred eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEeCCcEEEEEcCCCcee
Q 001224 780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKISLFNMMTFKTM 858 (1120)
Q Consensus 780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~sdg~i~vwd~~~~~~~ 858 (1120)
.+..+++ .|+...+.. .+| |...+++....++.+-.++.....
T Consensus 372 ~~~~~~~------------------~~~v~~s~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 372 QYEIYDF------------------AWDVSRSPG------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred cEEEEEE------------------EEEEEecCC------------------CCccCceEEEEEeCCeEEEecccccCCC
Confidence 7766655 222211110 011 222344444456777666543221
Q ss_pred -----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee--------Eee----------cccccceEEEE
Q 001224 859 -----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--------SKL----------KGHSKRITGLA 915 (1120)
Q Consensus 859 -----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--------~~l----------~~h~~~V~~l~ 915 (1120)
..+. ....|.+++|++ ++..+|+-..||.|.+|........ ..+ ..-...+..++
T Consensus 416 PPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (928)
T PF04762_consen 416 PPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA 493 (928)
T ss_pred chHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence 2222 346799999999 6666888899999999986542211 111 11234577888
Q ss_pred EccCCCEEEEEeCC---CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCcee
Q 001224 916 FSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC 991 (1120)
Q Consensus 916 ~s~d~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~ 991 (1120)
|..+...++....+ ..+.++++...+.. .......... ..+..+...++...++. ..+|.+..++......
T Consensus 494 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~ 568 (928)
T PF04762_consen 494 WLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS 568 (928)
T ss_pred EeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence 98887776666554 56888887443211 1111111111 23344444555442333 6788888666554322
Q ss_pred ee-ccccCCCCCCeeEEEECCCCc---EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001224 992 VK-QWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1067 (1120)
Q Consensus 992 ~~-~~~~~~h~~~v~~l~~s~dg~---~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~ 1067 (1120)
.. .+. . ...-..++...+.. .++.=+..|.+++ ++..++. .+. +.+.+ +.
T Consensus 569 ~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~--------------~~t--SF~v~---~~ 622 (928)
T PF04762_consen 569 QIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS--------------NCT--SFAVT---DS 622 (928)
T ss_pred ccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec--------------CCc--eEEEE---cC
Confidence 21 121 1 11222222222222 3333333444443 3333321 133 55554 34
Q ss_pred EEEEEeCCCcEEEEecC
Q 001224 1068 EFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1068 ~l~s~~~Dg~v~vW~~~ 1084 (1120)
+|+.......+++.++.
T Consensus 623 ~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 623 FLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEEecCceEEEEECc
Confidence 66666667889999988
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.5e-10 Score=133.41 Aligned_cols=225 Identities=11% Similarity=0.042 Sum_probs=141.2
Q ss_pred CcceeeeccCCCCceEEEEecCCCeEEEEEeC--CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 431 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 431 (1120)
..+...+..|...+.+.+|||||++|+.+... +..|.+||+.+++... +..+.+.+.+
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~ 250 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFA 250 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccC
Confidence 34445555688899999999999975554432 4689999999886532 3445667889
Q ss_pred EEEcCCCCeEEE-EECCCe--EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec-CCC--cEEEEECCCC
Q 001224 432 VIWSPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNG 505 (1120)
Q Consensus 432 l~~spdg~~las-~~~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s-~d~--~i~vwd~~~~ 505 (1120)
.+|||||+.|+. .+.++. |.+||+.++... .+..+.+......|+|||+. ++..+ .++ .|.+||+.++
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCC
Confidence 999999998864 455554 777788887643 35566667788999999995 44433 333 6888897766
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 582 (1120)
.. ..+..+...+....|+ ++|+.|+..+.+ ..|.+||+..... ..+. ....+....|+||
T Consensus 325 ~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spD------------ 387 (435)
T PRK05137 325 NP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPN------------ 387 (435)
T ss_pred Ce-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCC------------
Confidence 54 3443344555566675 455677766543 3577777654322 2121 1122334444444
Q ss_pred eeEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 583 LGVVQFDTTKNRFLAAGD-D-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 583 i~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
|+.++..+. . ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 388 ---------G~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 388 ---------GRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred ---------CCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 455555432 2 3688888866544 3443222 356677776
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=3.4e-09 Score=113.64 Aligned_cols=205 Identities=12% Similarity=0.089 Sum_probs=127.0
Q ss_pred cEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceee--
Q 001224 828 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK-- 901 (1120)
Q Consensus 828 ~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~-- 901 (1120)
..++++|||+++.+.. +..|.+.|+.+++.+..+.... ...-...++ +..+ + -+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~-~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-M-HCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-E-EeecCceEEEEecCCCceEEe
Confidence 3567788888887765 5778899998888888776422 222222222 2221 1 22344443333222 2111
Q ss_pred --EeecccccceE-EEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC----CCCCCCcEEEEccCCcEE
Q 001224 902 --SKLKGHSKRIT-GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHF 973 (1120)
Q Consensus 902 --~~l~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~fspdg~~l 973 (1120)
..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.............. -..+...-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11111001110 004455 8877776665 99999997654433333332221110 012344559999999988
Q ss_pred EEEe---C--------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224 974 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 974 a~~~---d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
.+.. . +.|.++|..+++.+..+.. ...+..++|||||+ +|++.+ .++.|.|+|..+++.+..+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8732 1 5799999999999998875 45899999999999 777776 57889999999999998874
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.34 E-value=2.2e-08 Score=104.61 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=133.9
Q ss_pred CCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeEeecccccceEE
Q 001224 835 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 835 d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
+|.+++..+.|+..+.+...+-.++. ++.+.|.-..+.- +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78899999999988888766554432 4667788888888 677889999999 99999998876 4666777788999
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e----CCeEEEEEcCC
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H----ETQLAIFETTK 988 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~----d~~v~i~d~~~ 988 (1120)
+..++||++++.+.....+.+.|++++... .+.. . ..+-|+.+.|+|+++++|.+ - ...|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idk--S---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDK--S---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecc--c---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999999999999998899999999997642 1111 1 12478999999999999986 2 35799999999
Q ss_pred ceeeeccccCCCCCCeeEEEECCCCcEEEEEE
Q 001224 989 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus 989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
++....-...+| =.+-+|.|||++|.--+
T Consensus 479 ~Kiy~vTT~ta~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTAY---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCccc---ccCcccCCCCcEEEEEe
Confidence 988776554333 34558999999877544
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=2e-09 Score=113.74 Aligned_cols=310 Identities=13% Similarity=0.118 Sum_probs=190.6
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc-EEEEccCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSKND 836 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-~l~~s~d~ 836 (1120)
..|..+.|+|.+++|.+-...+.+ +-+. +..+.. ....+.+||..+|.++...... ....-.. -+.|+.+.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~---~pe~-e~sp~~---~~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D 143 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPII---EPEI-EISPFT---SKNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDD 143 (561)
T ss_pred CCceecccCcccceeeeeccCCcc---Chhh-ccCCcc---ccCceeEEeccCceeEeecccc-CCcccccceeeeeecc
Confidence 456667777777776665554332 0000 000000 0013578888888765532211 1121133 57888899
Q ss_pred CEEEEEeCCcEEEEEcCCCcee-eeecCC-CCCeEEEEEecC-CCcEEEE-----EeCCCcEEEEEeecceeeEeecccc
Q 001224 837 SYVMSASGGKISLFNMMTFKTM-ATFMPP-PPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKLKGHS 908 (1120)
Q Consensus 837 ~~l~~~sdg~i~vwd~~~~~~~-~~~~~~-~~~i~~l~~sp~-d~~~las-----g~~dg~v~vwd~~~~~~~~~l~~h~ 908 (1120)
+++|--....++|+++ +.... ..+..- ...|+...|+|. ++..||. +..++++++|.+..++.+.+-.-..
T Consensus 144 ~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk 222 (561)
T COG5354 144 KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK 222 (561)
T ss_pred hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence 8888666678999997 33221 111111 356888999994 3344553 4567899999998766554433222
Q ss_pred cceEEEEEccCCCEEEEEe-----------CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--
Q 001224 909 KRITGLAFSHALNVLVSSG-----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-- 975 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s-----------~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-- 975 (1120)
..=..+.|.+.|++|..-- ....+.++++..... .... ...++|...+|.|.++.+++
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i----~V~~-----~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI----PVEK-----DLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc----ceec-----cccccceeeeecccCCceeEEe
Confidence 2334678888888765321 124577777763211 1110 11258999999999998887
Q ss_pred E-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC---CcEEEEEcCCcceee-eeCCCcccCCCCC
Q 001224 976 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC-RINPSAYLPAGVS 1050 (1120)
Q Consensus 976 ~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~iwd~~~~~~~~-~~~~~~~~~~g~~ 1050 (1120)
| .+-.+.++|++.. ....+. ...=..+.|||.+++++.++-| |.|-|||........ .+. +
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~-- 359 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------G-- 359 (561)
T ss_pred cccccceeecccccc-eEEecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------c--
Confidence 3 5778999999866 333322 3455667899999999988766 789999988766654 444 1
Q ss_pred CCCccceEEEecCCCCCEEEEEe------CCCcEEEEecCCCC------CCCCCCCCCCCCCCCC
Q 001224 1051 SSNVHPLVIAAHPQEPNEFALGL------SDGGVHVFEPLESE------GKWGVPPPVDNGSTSS 1103 (1120)
Q Consensus 1051 ~~~v~~~~i~~~p~d~~~l~s~~------~Dg~v~vW~~~~~~------~~~~~~~p~~~~~~~~ 1103 (1120)
.+.. .+.|+| |++++.+.. .|..+.||++...+ -.|..+-++-..++..
T Consensus 360 -~n~s--~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 360 -LNTS--YCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred -CCce--EeeccC-CceEEEecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccC
Confidence 1122 678999 688776653 37899999998776 4566654544444433
No 254
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2e-12 Score=143.38 Aligned_cols=301 Identities=19% Similarity=0.216 Sum_probs=194.7
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001224 168 NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVP 247 (1120)
Q Consensus 168 ~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1120)
+-.|..|+.|.++.|+.+|+++.+....+|||..|+|+.+...+..|-++. +-
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t---~R------------------------ 1064 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMT---GR------------------------ 1064 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhh---hc------------------------
Confidence 336999999999999999999999999999999999999554443333332 10
Q ss_pred CcccccccCCCCCCCCcccccccCCCCCCCccccccccccccCCCCCCCCCCcCCCCCCchhhhcccCCCCCcccccccc
Q 001224 248 TPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPV 327 (1120)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~v~~~v 327 (1120)
+......+.+..|.-+-.|...+..|.|.
T Consensus 1065 ----------------------------------------l~~rel~~~y~gV~g~~~dr~~IFSRFr~----------- 1093 (1516)
T KOG1832|consen 1065 ----------------------------------------LGTRELQSFYSGVHGNRRDRQFIFSRFRS----------- 1093 (1516)
T ss_pred ----------------------------------------ccchhhcCcccccccCcccchhhHhhccc-----------
Confidence 00001111122222232333333333322
Q ss_pred ccccccccCCCCcCCCCcCCCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceee
Q 001224 328 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV 407 (1120)
Q Consensus 328 ~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~ 407 (1120)
| ...-.|...-+|++||-+.++ |+.|+..|.|+++++.+|.....
T Consensus 1094 --w---------------------------~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s----- 1138 (1516)
T KOG1832|consen 1094 --W---------------------------RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES----- 1138 (1516)
T ss_pred --c---------------------------hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-----
Confidence 2 112237788999999999995 99999999999999999987653
Q ss_pred eccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCc
Q 001224 408 WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 485 (1120)
Q Consensus 408 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~ 485 (1120)
..+|..+|+.+.=|.||..+++.+.-. ...+|++.+- .....++. .-.++.|+.....
T Consensus 1139 --------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~ 1198 (1516)
T KOG1832|consen 1139 --------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF 1198 (1516)
T ss_pred --------------ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH
Confidence 678999999999999999888765433 4779998762 22222332 3467889877553
Q ss_pred eEEEEecCCCcEEEEECCCCceeEEe-ec---cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc
Q 001224 486 LCVITCGDDKTIKVWDATNGAKQYIF-EG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 561 (1120)
-+.|.......+||++++..+.++ .+ ....-....|+|. ..+++ .||.+ ||++..+.+..|..-..
T Consensus 1199 --r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl---ndGvL--WDvR~~~aIh~FD~ft~- 1268 (1516)
T KOG1832|consen 1199 --RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL---NDGVL--WDVRIPEAIHRFDQFTD- 1268 (1516)
T ss_pred --HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC--cceEe---eCcee--eeeccHHHHhhhhhhee-
Confidence 334444456889999999887763 22 1111233445443 23444 25544 99987655544432110
Q ss_pred eeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001224 562 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 641 (1120)
Q Consensus 562 v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 641 (1120)
. ..=.|+|.|+.++.-++ |||+++.+.++....-. -..+.|+..|..+..
T Consensus 1269 ------~---------------~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1269 ------Y---------------GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ------c---------------ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ceEEEeccCccchhh
Confidence 0 01136777778888775 99999998887765332 245788888876654
No 255
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.2e-10 Score=131.17 Aligned_cols=192 Identities=11% Similarity=0.113 Sum_probs=123.6
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~ 498 (1120)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 469999999887543 3334456678999999996 344667788766
Q ss_pred EEEC--CCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeE
Q 001224 499 VWDA--TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 499 vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
||.+ ..+. ...+..+.+......|+ +||+.|+..+. +|...+|.++... ....+......
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~------------- 329 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY------------- 329 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC-------------
Confidence 6654 4443 55565555555666775 45566665553 5667777654221 11111111111
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
.....|+|+|++++..+.++ .|.+||+.+++... +.... ......|+|||+.|+..+.++
T Consensus 330 --------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~---~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 330 --------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT---RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred --------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC---CccCceECCCCCEEEEEEecC
Confidence 12245666667777666543 69999998887543 32221 246789999999998887654
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.3e-10 Score=115.73 Aligned_cols=255 Identities=12% Similarity=0.084 Sum_probs=175.5
Q ss_pred cCCCCceEEEEecCCCeEEEEEe-CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
.....|+.++|.-|++.=+..+. .|-.+............. .|++. .....+.+|..++.. ...
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCE
Confidence 35578888999887764455554 555566666555443321 12211 233445566666654 446
Q ss_pred EEEEECCCeEEEEEccCCceee-eeeeecccccCeEEEEEcCCCCceEEEEecCC--CcEEEEECCCCceeEEeecc---
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEGH--- 514 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~h--- 514 (1120)
|++|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||.. ..+.|||++..+.+.+-+.-
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 7888889999999998443100 11123323 56777887777775 67779988 88999999988666543321
Q ss_pred ----c--cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 515 ----E--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 515 ----~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
. -.++++.|.+......|++++.-+.+++||.+.+.. ...+..... .+.++.
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~~ 254 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISSTG 254 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceeee
Confidence 1 234566676654467899999999999999986432 333433344 444555
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEE-EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..|.++.+++|..-|.+..+|++.++.... +++- .+.++++..+|.++++++++-|..+||+|+.+.
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 555666899999999999999999988776 5544 447999999999999999999999999999885
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=4.6e-09 Score=111.09 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=93.5
Q ss_pred CcEEEEEeecceeeEeecccccceEEEEEccCCCEEEE--EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224 888 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS--SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 965 (1120)
Q Consensus 888 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 965 (1120)
..++++++.... +....+-.++|...+|.|+++.+++ |-.+..+.++|+++. ...-.+.. .=..+.
T Consensus 255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~------~rNT~~ 322 (561)
T COG5354 255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ------KRNTIF 322 (561)
T ss_pred ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc------cccccc
Confidence 468888887433 3333356789999999999887664 457888999999883 12222222 236788
Q ss_pred EccCCcEEEE-Ee---CCeEEEEEcCCceeee-ccccCCCCCCeeEEEECCCCcEEEEEE------cCCcEEEEEcCCcc
Q 001224 966 FHQDQIHFLV-VH---ETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANLK 1034 (1120)
Q Consensus 966 fspdg~~la~-~~---d~~v~i~d~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~------~Dg~v~iwd~~~~~ 1034 (1120)
|+|.+++++. |. .|.+.+||....-... .+. ....+-+.|||||+++.+.. .|..|.|||+....
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 9999999988 43 3689999987654433 443 33455678999999988765 47889999987654
Q ss_pred ee
Q 001224 1035 LR 1036 (1120)
Q Consensus 1035 ~~ 1036 (1120)
..
T Consensus 399 ~f 400 (561)
T COG5354 399 VF 400 (561)
T ss_pred hh
Confidence 43
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=8.5e-09 Score=105.49 Aligned_cols=256 Identities=13% Similarity=0.209 Sum_probs=172.1
Q ss_pred CCCCccEEEEccCCCEEEEEe----CCcEEEEEcCC--Ccee--eeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001224 823 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 893 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 893 (1120)
....++-++++|+++.|.++. +|.|..|.++. |+.. ........+.+.+++++ ++++|+++. .-|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 677788999999999998875 36788777764 4432 22222233448899999 888888776 45799999
Q ss_pred Eeec-ceeeE--eecccccc----------eEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224 894 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 958 (1120)
Q Consensus 894 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 958 (1120)
-++. |.+.. .+..|.+. +....|.|++++|++.+ .| .|.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC-----
Confidence 8865 43221 12235444 78889999999999875 34 49999999876655444444444
Q ss_pred CCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc--ee--eec---cccC-CCCCCeeEEEECCCCcEEEEEEc-CCcEEE
Q 001224 959 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL--EC--VKQ---WVPR-ESSAPITHATFSCDSQLVYACFL-DATVCV 1027 (1120)
Q Consensus 959 ~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~--~~--~~~---~~~~-~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~i 1027 (1120)
...+.++|+|++++..+. -+++|.+|..... +. +.. +..+ .-......|.+++||++|.+... ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 356999999999988873 6789999998773 21 111 1110 01556788999999999997753 246888
Q ss_pred EEcCC--cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCC
Q 001224 1028 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPP 1094 (1120)
Q Consensus 1028 wd~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-g~v~vW~~~~~~~~~~~~~ 1094 (1120)
|.++. +++. .+. ... .....|-...|.|+ +++|+++..| .+|.|+.+....+.+....
T Consensus 271 f~V~~~~g~L~-~~~--~~~-----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 271 FSVDPDGGKLE-LVG--ITP-----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEcCCCCEEE-EEE--Eec-----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 87753 3322 221 011 12245667899994 6777766655 5899999887666555543
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.3e-09 Score=112.92 Aligned_cols=295 Identities=12% Similarity=0.140 Sum_probs=181.0
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
..+.-+.|||..++|++-+..-.+.-|+- .....+.+||..+|.+.............-.-..||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 34566777777777777665422222210 0011245666677765543322101112223468999999
Q ss_pred EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEeecceeeEeecccccceE
Q 001224 838 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 912 (1120)
Q Consensus 838 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~ 912 (1120)
++|.-...+|.||+..+..++..-.-.-..|....|+| .+.+||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988878899999887555433333456789999999 88888864422 3577777777777776665554444
Q ss_pred EEEEccCCCEEEEEeC----------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--Ee--C
Q 001224 913 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E 978 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~--d 978 (1120)
.|-|-.+|.+|+.--. -..+.|+.+..... ++.... ....|...+|-|.|..+++ |. .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI----pve~ve----lke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI----PVEVVE----LKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC----Cceeee----cchheeeeeeccCCCeEEEEEccccc
Confidence 5778788888874321 11244555443211 111111 1136788999999999888 32 3
Q ss_pred CeEEEEEcCCc----eeeeccccCCCCCCeeEEEECCCCcEEEEEE---cCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224 979 TQLAIFETTKL----ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus 979 ~~v~i~d~~~~----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
.++.+|.+++. +.+..+. ....+.+.|||.|++++.+. ..|.+.++|.+-......-. +.+
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh--- 537 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEH--- 537 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccc---
Confidence 57888988742 2222222 35567899999999988765 46889999987533332211 111
Q ss_pred CCccceEEEecCCCCCEEEEEeC------CCcEEEEecCCCC
Q 001224 1052 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1087 (1120)
Q Consensus 1052 ~~v~~~~i~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1087 (1120)
-....+-|.|+ |+|++++++ |...++|++....
T Consensus 538 --~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 538 --FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred --cccccceECCC-CCEEEEeeehhhhccccceEEEEeecHH
Confidence 11125789995 899999876 5567788876544
No 260
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.27 E-value=3e-10 Score=113.55 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=90.6
Q ss_pred CCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 896 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~ 896 (1120)
..++|.+++|+|+|+.+|+.. ++.|.+||++ ++.+..+. ...++.+.|+| +|++|++|+. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999887653 5789999997 56666664 46788999999 8999998874 3679999999
Q ss_pred cceeeEeecccccceEEEEEccCCCEEEEEeC------CCCEEEEECCC
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDG 939 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~v~iWd~~~ 939 (1120)
+.+.+.... |. .++.++|+|||++|++++. |..++||+...
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 888887765 33 3789999999999998864 78899999875
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=1.2e-08 Score=109.39 Aligned_cols=238 Identities=9% Similarity=0.062 Sum_probs=152.0
Q ss_pred EccCCCEEEEEeC-----------CcEEEEEcCCCceeeeecCCCC-------CeEEEEEecCCCcEEEEEe-C-CCcEE
Q 001224 832 LSKNDSYVMSASG-----------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 891 (1120)
Q Consensus 832 ~s~d~~~l~~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~-dg~v~ 891 (1120)
+|||++.+.++.. +.|.+||..+++.+..+..... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998887643 6799999999999988764222 244889999 888888665 4 78999
Q ss_pred EEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-CC
Q 001224 892 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQ 970 (1120)
Q Consensus 892 vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-dg 970 (1120)
+.|+.+++.+.++.-.. ...-...+.+. .+ .-+.||......++............+.+... ...... .|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~v~~rP-~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE-YLINHP-AYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCcc-ccccCC-ceEcCCC
Confidence 99999999888776422 11222222222 22 12345555444443322211111122111000 000011 4566 89
Q ss_pred cEEEEEeCCeEEEEEcCC-----ceeeeccccC-----CCCCCeeEEEECCCCcEEEEEEc----------CCcEEEEEc
Q 001224 971 IHFLVVHETQLAIFETTK-----LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL----------DATVCVFSA 1030 (1120)
Q Consensus 971 ~~la~~~d~~v~i~d~~~-----~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~iwd~ 1030 (1120)
+++.++.+|.|.+.|+.. ...+..+... -..+.+.-+++++|++++++... .+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 999998889999999543 3332222111 02334455999999999887532 247999999
Q ss_pred CCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe-CCCcEEEEecCCCC
Q 001224 1031 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1087 (1120)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1087 (1120)
.+++.+.++.. | ..+..++++| |++ +|++.. .++.|.|.|+.+++
T Consensus 287 ~t~kvi~~i~v------G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 287 KTGKRLRKIEL------G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCeEEEEEeC------C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 99999998771 2 1233799999 577 777665 68899999999987
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.2e-09 Score=125.36 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=130.9
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
......+...+.+.+|||||++|+.+...++ .|.+||+.+++... +....+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeE
Confidence 3345557788999999999998665554444 58889998876532 1111223456899
Q ss_pred cCCCCeEEE-EECCCe--EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCceeE
Q 001224 435 SPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQY 509 (1120)
Q Consensus 435 spdg~~las-~~~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~~~~ 509 (1120)
||||+.|+. .+.++. |.+||+++++.. .+..+...+...+|+|||+. ++++...++ .|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence 999998876 455664 777788887633 34556566788999999996 333443344 46677877776543
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEec-CCe--EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
+..........+|+ ++|++|+..+. ++. |.++|+.++... .+... ......
T Consensus 345 -Lt~~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~p--------------------- 398 (448)
T PRK04792 345 -LTFEGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESP--------------------- 398 (448)
T ss_pred -EecCCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCc---------------------
Confidence 22122223334664 45566665544 444 444565554321 11111 111122
Q ss_pred EEcCCCCEEEEEe-CCC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 587 QFDTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 587 ~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
.|+|+|+.++..+ .+| .+++++. +|.....+.... ..+...+|+|
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp 446 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP 446 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence 3555555565544 333 3777787 555555555332 2466778876
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.7e-09 Score=122.97 Aligned_cols=225 Identities=10% Similarity=0.082 Sum_probs=131.1
Q ss_pred cCCCCceEEEEecCCCeE--EEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 362 NQGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~l--la~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
.....+..-+|||||+.+ +++...+| .|.+.++.+|+... +....+.....+||||
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPR 241 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCC
Confidence 345566778999999863 33555444 57888888776543 2223445567899999
Q ss_pred CCeEEEEEC-----CCeEEEEEccCCc--eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE--ECCC-Cce
Q 001224 438 GSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-GAK 507 (1120)
Q Consensus 438 g~~las~~~-----dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw--d~~~-~~~ 507 (1120)
|++||..+. +-.+.+|++.++. ..+. ...++.+.....+|+|||+. ++++...+|...+| ++.. +..
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccc
Confidence 999997653 2234557776532 1221 12223344567899999996 23333456655555 4432 333
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
...+..+...+....|++ ||+.|+..+.+ ..|.+||+.+++... +......+....|+|||
T Consensus 319 ~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG------------- 382 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS------------- 382 (428)
T ss_pred eEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC-------------
Confidence 445554555666677754 55677665543 468899987754432 22112233444555555
Q ss_pred EEEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC
Q 001224 585 VVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 636 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 636 (1120)
+.|+... ....|++||+.+++........+ .+...+|+|-.
T Consensus 383 --------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 383 --------LHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred --------CEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence 4555432 24578999998877655443222 35667888743
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.5e-09 Score=108.82 Aligned_cols=280 Identities=14% Similarity=0.199 Sum_probs=172.4
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC-
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS- 439 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~- 439 (1120)
+...+-|.+|.|..+|.+ ||||..+|.|.++.-..... +..++... .+...+.+-.-.--.-...|..+.|.++++
T Consensus 22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-GEYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred echhcceeeEEeecccce-EeecCCCCeEEEeecccccc-cceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 335678999999999995 99999999999997543222 11111100 000001110000111235789999998654
Q ss_pred -eEEEEECCCeEEEEEccCCceee------------------e--------------eee-ecccccCeEEEEEcCCCCc
Q 001224 440 -LFGVAYSRHIVQIYSYHGGDEVR------------------Q--------------HLE-IDAHVGGVNDIAFSHPNKQ 485 (1120)
Q Consensus 440 -~las~~~dg~v~iwd~~~~~~~~------------------~--------------~~~-l~~h~~~V~~v~~s~d~~~ 485 (1120)
.++..+.|.+|++|.+....... . ... -.+|.--|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56677889999999876322110 0 000 135777799999999998
Q ss_pred eEEEEecCCCcEEEEECCCCce---eEEeecc-----ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce----
Q 001224 486 LCVITCGDDKTIKVWDATNGAK---QYIFEGH-----EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---- 553 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---- 553 (1120)
.++++ +|=.|.+|+++--.. +..++.+ +.-|++..|||... .+++-.+..|+|++.|++......
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 45555 577899999873322 2222322 24577888988765 466666778999999998532211
Q ss_pred eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEEecCCCC--------
Q 001224 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL-------- 624 (1120)
Q Consensus 554 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~-------- 624 (1120)
.+..+..+ ..+..+. .--..|..+.|+.+|+++++-+ --+|++||+ ...+++.+++.|...
T Consensus 255 lfEepedp--------~~rsffs-eiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 255 LFEEPEDP--------SSRSFFS-EIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhccccCC--------cchhhHH-HHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 11111111 1100000 0011345566777777777644 368999999 456677776654321
Q ss_pred --CCc---CeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 625 --PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 625 --~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
..| ..++|+.++.++++|+....+++++...|.
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 112 358899999999999999999999977663
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.9e-09 Score=123.18 Aligned_cols=227 Identities=9% Similarity=0.040 Sum_probs=135.0
Q ss_pred CcceeeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 431 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 431 (1120)
..+...+..+...+...+|||||++|+.+...+ ..|.+||+.+++... +....+.+..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~ 247 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA 247 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence 334455566788899999999999865555443 368999998886543 2223334567
Q ss_pred EEEcCCCCeEEE-EECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCc
Q 001224 432 VIWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGA 506 (1120)
Q Consensus 432 l~~spdg~~las-~~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~ 506 (1120)
.+|||||++|+. .+.+| .|.+||+++++.. .+..+........|+|||+. ++++...++ .|.++|+.+++
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 899999999885 44454 5888899987643 25556666778899999996 333333333 57788887777
Q ss_pred eeEEeeccccCeEEEeeccCCCceEEEEEec-CC--eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
... +...........|+ ++|+.|+..+. ++ .|.+||+.+++... +.. ........
T Consensus 323 ~~~-lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~----------------- 380 (430)
T PRK00178 323 AER-VTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPS----------------- 380 (430)
T ss_pred EEE-eecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCce-----------------
Confidence 533 22111222334554 45567766554 33 47778877644321 111 11111223
Q ss_pred eEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224 584 GVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 634 (1120)
|+|+|+.++..+.+ ..|.++++. +.....+.... ..+...+|+|
T Consensus 381 ----~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 381 ----VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred ----ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCC--CCcCCCccCC
Confidence 45555566655432 346777774 33333443322 2356677776
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=1.3e-09 Score=109.34 Aligned_cols=213 Identities=13% Similarity=0.154 Sum_probs=140.2
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEE-ccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS-YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd-~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v 499 (1120)
.+.||.+.|++...-|-..-+.+.+.|.+++||- .++++.-..+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 4789999999999999888899999999999995 4444422211 112356889999999888 6888989999988
Q ss_pred EECCC----CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC-CCCCceeeeCCCCceeEEEEcCCCCeE
Q 001224 500 WDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 500 wd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
+.+.. ...++....|...|..+.|+..+ .++++.+.|..+. |-.. .+..+-.+.. .+.+..++
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~-----~~~~t~~~---- 162 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFA-WHCTESGNRLGGYNF-----ETPASALQ---- 162 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceE-EEeeccCCcccceEe-----eccCCCCc----
Confidence 87653 34456667899999999886555 6899999888775 4332 2211110000 00000000
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
++- .+...|...|.|.+-.+. .-..+.++.++ ...+.+++|.+..+.|.+|..|..+.+||
T Consensus 163 -------------~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 163 -------------FDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred -------------eee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 000 023444455555554443 33455555544 55899999999999999999999999999
Q ss_pred ccCcchhhhhcccc
Q 001224 653 TSDGIRLLRTFENL 666 (1120)
Q Consensus 653 ~~~~~~~~~~~~~~ 666 (1120)
+.-.......+.+|
T Consensus 226 igg~~g~~~el~gh 239 (404)
T KOG1409|consen 226 IGGRKGTAYELQGH 239 (404)
T ss_pred ccCCcceeeeeccc
Confidence 86553333333333
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=6e-09 Score=120.57 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=123.3
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--c
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 496 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~ 496 (1120)
+..+...+...+|||||++||.++.+ ..|.+||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566689999999999999987654 479999999886432 3445567778999999996 344555444 5
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CC--eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
|++||+.++... .+..+........|+ ++|+.|+..+. ++ .|.++|+.+.+ ...+.......
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~----------- 324 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYN----------- 324 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCc-----------
Confidence 899998877643 344444444455665 45667765554 33 56666665432 12222222222
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
....|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||++|+..+.++
T Consensus 325 ----------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 325 ----------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ----------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 3345566666777777665 7899999876543 332221 235578999999988877754
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.17 E-value=3.1e-09 Score=123.03 Aligned_cols=166 Identities=17% Similarity=0.106 Sum_probs=112.2
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
.....+..+...+...+|||||++|+.+...+ ..|++||+.+++... +..+.+.+.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~ 239 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAP 239 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence 34455666777899999999999755444333 479999999876543 23345567789
Q ss_pred EEcCCCCeEEEE-ECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec-CCC--cEEEEECCCCc
Q 001224 433 IWSPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGA 506 (1120)
Q Consensus 433 ~~spdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s-~d~--~i~vwd~~~~~ 506 (1120)
+|+|||+.|+.. +.++ .|.+||+.++.... +..+........|+|||++ |+..+ .++ .|.++|+.+++
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence 999999988754 4444 58888998875332 4445555667899999995 44333 333 58888887766
Q ss_pred eeEEeeccccCeEEEeeccCCCceEEEEEecCC---eEEEEecCCC
Q 001224 507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNL 549 (1120)
Q Consensus 507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 549 (1120)
. ..+..+...+....|+ ++|.+++.++.++ .|.+||+.+.
T Consensus 314 ~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 314 V-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred E-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 4 3444445556666765 4557787777665 7888887763
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=4.9e-09 Score=113.46 Aligned_cols=188 Identities=16% Similarity=0.306 Sum_probs=148.1
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCCceeeeecCC---CCCeEEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 890 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~lasg~~dg~v 890 (1120)
|-..++|... ||.+++|+...++....+.+. .+..++.+|. | .|...+|-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456788777 999999999988877666432 2333444432 1 134488889999999
Q ss_pred EEEEeecceeeEeec--ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 891 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 891 ~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+..... ......+..+ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888885 599999999999999999999999999999998743 3444444333 678999999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC-----CcEEEEE-EcCCcEEEEEcCC
Q 001224 969 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYAC-FLDATVCVFSAAN 1032 (1120)
Q Consensus 969 dg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s~-~~Dg~v~iwd~~~ 1032 (1120)
||+.++++ .++|++||+++++.+..|. +|.++|.+++|..+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99998875 4789999999999999988 99999999999887 7776644 4456688886644
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.3e-08 Score=108.47 Aligned_cols=321 Identities=11% Similarity=0.163 Sum_probs=201.6
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----------CcEEEEE
Q 001224 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA 652 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd 652 (1120)
+.+.|||-|.+|++--..| |.+|--.+...++.+. |. .|.-+.|||+.+||++-+.. ..+.|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3456666666777766544 7789777766777775 22 47789999999999986532 4567777
Q ss_pred ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224 653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 732 (1120)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 732 (1120)
+.+| ...+.+.... +..
T Consensus 289 I~tG-~lkrsF~~~~--------------------------------------------------------------~~~ 305 (698)
T KOG2314|consen 289 IATG-LLKRSFPVIK--------------------------------------------------------------SPY 305 (698)
T ss_pred cccc-chhcceeccC--------------------------------------------------------------CCc
Confidence 7776 3333332100 000
Q ss_pred eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224 733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812 (1120)
Q Consensus 733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 812 (1120)
..-.-+.||.|+++++....+ .|.||+... ..+.|. +
T Consensus 306 -------------------------~~WP~frWS~DdKy~Arm~~~-sisIyEtps--------------f~lld~---K 342 (698)
T KOG2314|consen 306 -------------------------LKWPIFRWSHDDKYFARMTGN-SISIYETPS--------------FMLLDK---K 342 (698)
T ss_pred -------------------------cccceEEeccCCceeEEeccc-eEEEEecCc--------------eeeecc---c
Confidence 111235789999988877775 677776421 011111 1
Q ss_pred cccccCCCCCCCCCccEEEEccCCCEEEEEe---C---CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe-
Q 001224 813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM- 885 (1120)
Q Consensus 813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s---d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~- 885 (1120)
.+ .-..|....|+|.+..||.-. + .++.+..+-+++.+++-+-+.-.=..+-|-. .|.+|+.--
T Consensus 343 sl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd 413 (698)
T KOG2314|consen 343 SL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD 413 (698)
T ss_pred cc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence 11 345678889999999999764 1 4588888888888777665544444556666 677776432
Q ss_pred ---------CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCC
Q 001224 886 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTG 953 (1120)
Q Consensus 886 ---------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~ 953 (1120)
.-..+.|+.++....--..-.-...|...+|-|.|..+++-+. ..++.+|.+++... ....+..++.
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc
Confidence 1123445555543322222224567889999999988775543 35789999885222 2223333333
Q ss_pred CCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc------CC
Q 001224 954 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DA 1023 (1120)
Q Consensus 954 ~~~~~~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------Dg 1023 (1120)
. ....+.|+|.|++++++ ..|.+..+|+....+..+-.+ . ....+.+-|.|.|+|+++++. |.
T Consensus 493 ~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 493 K-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhcccc
Confidence 2 34789999999999883 467899999986444333221 2 335678899999999999885 44
Q ss_pred cEEEEEcCC
Q 001224 1024 TVCVFSAAN 1032 (1120)
Q Consensus 1024 ~v~iwd~~~ 1032 (1120)
--+||+...
T Consensus 566 GYri~tfqG 574 (698)
T KOG2314|consen 566 GYRIFTFQG 574 (698)
T ss_pred ceEEEEeec
Confidence 456666554
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.6e-09 Score=117.11 Aligned_cols=147 Identities=15% Similarity=0.232 Sum_probs=120.2
Q ss_pred CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC
Q 001224 767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 845 (1120)
Q Consensus 767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg 845 (1120)
.+-..++-+...|.|.+|+... |++.. .+....|.+.|.++.++.+-..|.+++ |+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~----------------------g~it~-~~st~~h~~~v~~~~~~~~~~ciyS~~ad~ 124 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAG----------------------GEITA-KLSTDKHYGNVNEILDAQRLGCIYSVGADL 124 (541)
T ss_pred CCceEEEeecCCccEEEEEecC----------------------CeEEE-EEecCCCCCcceeeecccccCceEecCCce
Confidence 3444577777788888887632 22211 133345999999999999999999988 89
Q ss_pred cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC-----C
Q 001224 846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----L 920 (1120)
Q Consensus 846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~ 920 (1120)
.+..|+..+....+.++.....+.+++++| |+..|++|+ ++|++||+++++.+..|.||.++|.++.|..+ |
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G 201 (541)
T KOG4547|consen 125 KVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIG 201 (541)
T ss_pred eEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccccc
Confidence 999999999999999998899999999999 899999876 68999999999999999999999999999877 5
Q ss_pred CEEE-EEeCCCCEEEEECCC
Q 001224 921 NVLV-SSGADSQLCVWSSDG 939 (1120)
Q Consensus 921 ~~l~-s~s~Dg~v~iWd~~~ 939 (1120)
.++. +...+.-+.+|-++.
T Consensus 202 ~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 202 KYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceeeeccccccceeEEEEEc
Confidence 5554 555666788897766
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=7.5e-09 Score=101.87 Aligned_cols=274 Identities=12% Similarity=0.141 Sum_probs=168.7
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEc---CCCc-eEEEeccCceEEEeeecccccCCCCccccccCcee
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT---NSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQL 805 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 805 (1120)
|.+.+|++...+... ...+.. .....+..+.|. .+|. .++-+-..|.|.+|........ ..
T Consensus 46 Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss-----------~~ 110 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS-----------VH 110 (339)
T ss_pred cceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceee-----------ee
Confidence 677788877655444 221111 122334444443 2344 4555666788888765321110 00
Q ss_pred ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEE
Q 001224 806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIA 882 (1120)
Q Consensus 806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la 882 (1120)
..+-+...+ ......++.|++.+..++++. +|.+.+-+...... ++..++|.-++..+.|+..+.+++.
T Consensus 111 L~~ls~~ki--------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 111 LRGLSSKKI--------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred ecccchhhh--------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 011111000 111245677888888888876 78888666554443 3478899999999999987888999
Q ss_pred EEeCCCcEEEEEee-cceeeEe-ecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCC
Q 001224 883 IGMDDSSIQIYNVR-VDEVKSK-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 959 (1120)
Q Consensus 883 sg~~dg~v~vwd~~-~~~~~~~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 959 (1120)
+|++|+.+..||++ .++.+.. .+-|...|.++.-+| .+.++++|+.|-.|++||.+.-.+ ++. .+ +..+
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl~--~~--~v~G 254 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PLF--KA--KVGG 254 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----ccc--cC--cccc
Confidence 99999999999998 3444433 566888999998885 578999999999999999885221 111 11 1125
Q ss_pred CCcEEEEccC--CcEEEEEeCCeEEEEEcCCceee---eccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEE-EEEcCC
Q 001224 960 SDTRVQFHQD--QIHFLVVHETQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAAN 1032 (1120)
Q Consensus 960 ~i~~~~fspd--g~~la~~~d~~v~i~d~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~-iwd~~~ 1032 (1120)
.|..+..+|. ++.|+++.-...+|-+...+... .......|.+-+..-.|.....+||+++ .|..++ +|-..+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 7899999985 44556666666677666544322 1111224555555556644445678754 466644 776555
Q ss_pred cc
Q 001224 1033 LK 1034 (1120)
Q Consensus 1033 ~~ 1034 (1120)
++
T Consensus 335 ~~ 336 (339)
T KOG0280|consen 335 GE 336 (339)
T ss_pred CC
Confidence 44
No 273
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3.3e-08 Score=114.35 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=122.7
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--c
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 496 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~ 496 (1120)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||++ ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 368999999886432 3333445667999999996 333555555 5
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCC--eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
|.+||+.+++.. .+..+........|++ +|+.|+..+ .+| .|.++++.+++.. .+......
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~------------ 332 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNY------------ 332 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC------------
Confidence 888899887654 4544555555566654 555665544 344 4666666544321 11111111
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-C--c
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 647 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 647 (1120)
.....|+|+++.++..+. ++ .|.+||+.+++.. .+... . ......|+|||++++..+.+ + .
T Consensus 333 ---------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 333 ---------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred ---------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 122456666667766553 22 5888999887643 33321 1 22357899999999877654 3 3
Q ss_pred EEEEEcc
Q 001224 648 IKILATS 654 (1120)
Q Consensus 648 i~iwd~~ 654 (1120)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555653
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.3e-08 Score=111.63 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=125.8
Q ss_pred CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE---EEECCC--eEEEEEccCCcee
Q 001224 387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEV 461 (1120)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~dg--~v~iwd~~~~~~~ 461 (1120)
+.|.+.|.+.+.... +......+..-+|||||+.++ +...+| .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 467777776554322 333455677789999998633 343443 5777788887643
Q ss_pred eeeeeecccccCeEEEEEcCCCCceEEEEecC----CCcEEEEECCCC---ceeEEeeccccCeEEEeeccCCCceEEEE
Q 001224 462 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFS 534 (1120)
Q Consensus 462 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~----d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 534 (1120)
+ +....+.....+|||||+++ +++... |..+.+|++..+ .......++.+.....+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 3 33344556678999999962 333322 333455777653 3333332222334456664 56666665
Q ss_pred Ee-cCCeEEEEecC--CC-CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC---CCeEEEE
Q 001224 535 TA-LDGKIKAWLYD--NL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFW 607 (1120)
Q Consensus 535 ~~-~dg~i~iwd~~--~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw 607 (1120)
.+ .+|...+|.+. .. +....+......+. ...|+|||+.|+..+. ...|.+|
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~---------------------~p~wSPDG~~Laf~~~~~g~~~I~v~ 356 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS---------------------CPAWSPDGKKIAFCSVIKGVRQICVY 356 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCcc---------------------ceeECCCCCEEEEEEcCCCCcEEEEE
Confidence 55 46655566442 21 11222222222233 3445555556665543 2469999
Q ss_pred ECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC---CCcEEEEEccCc
Q 001224 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN---DNGIKILATSDG 656 (1120)
Q Consensus 608 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~ 656 (1120)
|+.+++....... ...+....|+|||+.|+.... ...|.++++.++
T Consensus 357 dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 357 DLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCeEEccCC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9998876543322 124567999999998876543 346778887665
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=5.4e-08 Score=111.84 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=117.8
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc--
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-- 496 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~-- 496 (1120)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466789999999999999987543 258888998876432 2222334457899999996 3445566665
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCCe--EEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
|.+||+.+++. ..+..+.......+|++ +|+.|+..+ .++. |.++|+.+++. ..+.........
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~--------- 354 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLG--------- 354 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcC---------
Confidence 78888887764 44444555556677754 456665544 3444 55555554332 111111111122
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-Cc--
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG-- 647 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~-- 647 (1120)
.+|+|+|++++..+. ++ .|.++|+.+++.. .+.... ......|+|||+.|+..+.+ +.
T Consensus 355 ------------~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 355 ------------GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred ------------eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 345555556665543 33 4666788877643 232221 12346899999988876654 33
Q ss_pred EEEEEc
Q 001224 648 IKILAT 653 (1120)
Q Consensus 648 i~iwd~ 653 (1120)
+.+++.
T Consensus 419 l~~~~~ 424 (448)
T PRK04792 419 LAAVSI 424 (448)
T ss_pred EEEEEC
Confidence 556665
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=5.8e-08 Score=110.31 Aligned_cols=306 Identities=12% Similarity=0.099 Sum_probs=174.1
Q ss_pred eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 609 (1120)
Q Consensus 530 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 609 (1120)
..++.++.+|.|..+|..+++................ .++..++.++.+|.++.+|.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~-----------------------v~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG-----------------------ADGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE-----------------------EcCCEEEEEcCCCEEEEEEC
Confidence 4788888889999999888877765544332111111 12346888889999999999
Q ss_pred CCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhH
Q 001224 610 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 689 (1120)
Q Consensus 610 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1120)
.+|+.+........ ....... .+..++.++.+|.+..||..++. ............. +.
T Consensus 123 ~tG~~~W~~~~~~~--~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~---------~~------- 181 (377)
T TIGR03300 123 EDGKELWRAKLSSE--VLSPPLV--ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALT---------LR------- 181 (377)
T ss_pred CCCcEeeeeccCce--eecCCEE--ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCcee---------ec-------
Confidence 99998877654332 1111111 35577778889999999999883 3222211100000 00
Q ss_pred hhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC-ccccccEEEEEEcC-
Q 001224 690 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKISRLIFTN- 767 (1120)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~- 767 (1120)
. ... ... .+..++.+..++.+..+|..++...-... +..+. .........+.-+|
T Consensus 182 -------------------~-~~s-p~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 182 -------------------G-SAS-PVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred -------------------C-CCC-CEE-ECCEEEEECCCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccE
Confidence 0 000 000 12355666677788888776543221111 00000 00000000000011
Q ss_pred -CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC
Q 001224 768 -SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 845 (1120)
Q Consensus 768 -~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg 845 (1120)
.+..+++++.+|.+..||..+++ .+|....+ .....+ .++..+++++ +|
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS--------------SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC--------------CccCce--EeCCEEEEECCCC
Confidence 24467777888888888864322 23433211 011122 2445666666 89
Q ss_pred cEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224 846 KISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 924 (1120)
Q Consensus 846 ~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 924 (1120)
.+..+|..+++.+....... ....+... .+..|++++.+|.|+++|..+|+.+..+..+...+..--...+ ..|+
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~ 365 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLL 365 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEE
Confidence 99999999998775553221 12222233 2457888999999999999999999888876654433222223 3588
Q ss_pred EEeCCCCEEEE
Q 001224 925 SSGADSQLCVW 935 (1120)
Q Consensus 925 s~s~Dg~v~iW 935 (1120)
.++.||.|..+
T Consensus 366 v~~~dG~l~~~ 376 (377)
T TIGR03300 366 VQTRDGDLYAF 376 (377)
T ss_pred EEeCCceEEEe
Confidence 88899988765
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.05 E-value=2.3e-08 Score=98.48 Aligned_cols=192 Identities=19% Similarity=0.117 Sum_probs=135.2
Q ss_pred CCCCceEEEEec---CCCeEEEEEeCCCcEEEEecCCCceeEe-eceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 363 QGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 363 h~~~v~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
..+.+..|.|.- +|...++-+-.+|.|.++.....+.... +.+.. ..-....-.++.|++.|
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence 446677777763 4554567777789999988754333221 11100 00001134678899999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCceeEE-eecccc
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEA 516 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~~~-~~~h~~ 516 (1120)
..++++-.+|.+.+-+..... +.....+++|.-..+...|+..... ++.+||+|+.+..||++ .++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999998855544433 3444468899999999999987776 89999999999999999 4555554 456889
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 571 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 571 (1120)
.|.++.-++ +...++++|+.|-.|++||.++.+....-..-.+.|..+..+|.-
T Consensus 212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 999887554 456799999999999999999766555444445666666666643
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=1.3e-07 Score=107.43 Aligned_cols=228 Identities=16% Similarity=0.121 Sum_probs=134.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 458 (1120)
Q Consensus 379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~ 458 (1120)
.+++++.+|.|.-+|..+|+.+-+..+. ..... ..+ .++..++.++.++.+..+|.++|
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEECCCC
Confidence 3778888999999999999876542221 00111 111 25778888999999999999999
Q ss_pred ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE-----EEeeccCCCceEEE
Q 001224 459 DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-----SVCPHHKENIQFIF 533 (1120)
Q Consensus 459 ~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~l~ 533 (1120)
+.+.... +. +.+.+.-.. .+. .++.++.++.|..||.++|+.+..+......+. +... .+ ..++
T Consensus 126 ~~~W~~~-~~---~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~-~~v~ 194 (377)
T TIGR03300 126 KELWRAK-LS---SEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---AD-GGVL 194 (377)
T ss_pred cEeeeec-cC---ceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---EC-CEEE
Confidence 8665321 11 222221111 233 366677899999999999999877654332211 1111 12 3677
Q ss_pred EEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001224 534 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 613 (1120)
Q Consensus 534 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 613 (1120)
.+..++.+..+|..+++......... +.+....... ........+ .+..+++++.+|.++.||..+|+
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~~-~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELERL-VDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhhh-hccCCccEE--ECCEEEEEEcCCEEEEEECCCCc
Confidence 78888999999998876554332110 0000000000 000000001 13467778889999999999998
Q ss_pred eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 614 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 614 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.+....... ..... .++..+++++.+|.+..+|..++
T Consensus 263 ~~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 263 VLWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred EEEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 776654211 11122 24566777777788888877655
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=1.2e-07 Score=118.88 Aligned_cols=257 Identities=9% Similarity=0.075 Sum_probs=161.9
Q ss_pred ccEEEEccCCC-EEEEEe-CCcEEEEEcCCCceeeeecC--------------CCCCeEEEEEecCCCcEEEEE-eCCCc
Q 001224 827 VPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIG-MDDSS 889 (1120)
Q Consensus 827 v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d~~~lasg-~~dg~ 889 (1120)
...+++++++. .+++-. ++.|++||... ..+..+.+ .-.....+++++ ++..|+++ ..++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 35688987644 444444 68899999764 44433322 112357899999 56555444 45578
Q ss_pred EEEEEeecceeeEeeccc-----------------ccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccce---ee
Q 001224 890 IQIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 948 (1120)
Q Consensus 890 v~vwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~ 948 (1120)
|+++|+.++. +.++.+- -..-+.++|+| ++..+++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987764 3333210 11236799999 5666778788899999998775431100 00
Q ss_pred eccCCCC---CCCCCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceeeecc-----------ccC--------CCCCCe
Q 001224 949 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPR--------ESSAPI 1004 (1120)
Q Consensus 949 ~~~~~~~---~~~~~i~~~~fspdg~~la~--~~d~~v~i~d~~~~~~~~~~-----------~~~--------~h~~~v 1004 (1120)
....+.. ........++++|+|.+|++ ..++.|++||+.++...... ... ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0001110 11134578999999986665 36789999999876532110 000 011235
Q ss_pred eEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc-ccCCCCC--CCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224 1005 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1005 ~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~-~~~~g~~--~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
..++|+++|.++++-+.++.|++||..++.......... ...+|.. ..--.|..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 689999999988888889999999999887664332100 0011100 1112466899999 68889998999999999
Q ss_pred ecCCCC
Q 001224 1082 EPLESE 1087 (1120)
Q Consensus 1082 ~~~~~~ 1087 (1120)
|+.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 998876
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.6e-09 Score=114.59 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=171.2
Q ss_pred CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcC-------CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224 822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 893 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 893 (1120)
+|...|+.++--.+.+.+++++ |.+|++|.++ +..+..++..|..+|..+.|-. +.++++++ ||-|.+|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 4888999988777777888888 9999999986 2346778899999999999998 88888764 7899999
Q ss_pred EeecceeeEeecc--cccceEEEEEcc--CCCEEEE-EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 894 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 894 d~~~~~~~~~l~~--h~~~V~~l~~s~--d~~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
|.--++.+..+.. ..+.+..+..-+ |...++. ++...+|+++|.+.++...........+.. ..+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeEEEecc
Confidence 9888877664321 122333333323 3444444 478899999999987654433333333332 4678999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEE-EEcCCcceeeeeCCCcccC
Q 001224 969 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRINPSAYLP 1046 (1120)
Q Consensus 969 dg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~i-wd~~~~~~~~~~~~~~~~~ 1046 (1120)
.|++++++ ++|.|.+.|.++|..+..|.+- .-....++ .|..+.|+....|.++.| |...+|....+.++....
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep- 962 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP- 962 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc-
Confidence 99999996 8999999999999999988742 33334444 467778888888999999 999888887666522211
Q ss_pred CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEe
Q 001224 1047 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1082 (1120)
Q Consensus 1047 ~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~ 1082 (1120)
..|..+-|..|++....+.+.||.
T Consensus 963 ------------ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 963 ------------AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ------------hhhhhccCceeEEeccCcEEEEEe
Confidence 223323356677776666677775
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=3.3e-09 Score=127.37 Aligned_cols=198 Identities=19% Similarity=0.351 Sum_probs=156.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+-..|.++.=+|...+ .+||+.||.|++|.+..+..+.. |+ ..|. ..|+.+.|+.+|+.+.
T Consensus 2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence 4578889999999985 89999999999999998887763 22 2233 7899999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec---CCCcEEEEECCC-CceeEEeeccccCe
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-GAKQYIFEGHEAPV 518 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s---~d~~i~vwd~~~-~~~~~~~~~h~~~v 518 (1120)
.+..||.+.+|.+.. +.....+.|....+...|-. . .+++++ +++.+.+||..- +..-..-..|.+.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence 999999999999883 24446778999999999986 3 466654 578899999653 22222227799999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
+++++.|.. +.|++|+.+|.|++||++..+.+..+.. ++ ...++++|
T Consensus 2340 T~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2340 TVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFVTG 2386 (2439)
T ss_pred eEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheeecc
Confidence 999986554 7999999999999999998776655443 11 12579999
Q ss_pred eCCCeEEEEECCCCceeEEEec
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
+..|.++||++.....+..+..
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcccceEEEEccccchhhcCch
Confidence 9999999999998887777754
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.8e-09 Score=114.23 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=148.8
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC-cee---eeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 496 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~ 496 (1120)
.+.||...|..++--.+.+-+++++.|++|++|.++.. ..+ .+.++++.|..+|.++.|..+.+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999988888899999999999999998742 222 25568899999999999999988 56665 889
Q ss_pred EEEEECCCCceeEEee-----ccccCeEEEeeccCCCceEEEEE-ecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224 497 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 570 (1120)
|.+||.--|+.+.... +..+.|.++ ++-+...++.| +...+|+++|.+..+-...+..... -.|
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna------~~P- 875 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA------PGP- 875 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC------CCC-
Confidence 9999988887765332 222334443 34344556555 6788999999887554332221100 011
Q ss_pred CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 650 (1120)
...++++++.+.|+.++++-.+|.|.+.|.++|+.+..+..-.- ....++ .|..+.|+....|.++.+
T Consensus 876 ---------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 876 ---------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred ---------chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence 12566778888888999999999999999999998877653211 111122 355667777778888888
Q ss_pred -EEccCc
Q 001224 651 -LATSDG 656 (1120)
Q Consensus 651 -wd~~~~ 656 (1120)
|...++
T Consensus 944 nWhaldg 950 (1034)
T KOG4190|consen 944 NWHALDG 950 (1034)
T ss_pred eehhcCC
Confidence 876655
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=1.3e-08 Score=105.00 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=114.4
Q ss_pred ceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC
Q 001224 367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 446 (1120)
Q Consensus 367 v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 446 (1120)
+..+.++|.++ |+|++..+....++++...... .+.++.. ....-...++.+..+......-.++.
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecccCcceeeeeeccceEEEEeecCC
Confidence 34455667777 6888888888777777654320 1111100 01112223343433333333333455
Q ss_pred CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeecc
Q 001224 447 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHH 525 (1120)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~ 525 (1120)
...+.+|+...+.+. .+-||-..++.|+|+||++ +++++..|..|||-....-..+..| -||...|..++..+
T Consensus 131 ~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred ceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence 667777777765433 3668999999999999999 7999999999999887766666555 57999999999743
Q ss_pred CCCceEEEEEecCCeEEEEecCCCCCceeeeC
Q 001224 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 557 (1120)
Q Consensus 526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 557 (1120)
+ ..|+++|.|++|++||+.+++.+.++..
T Consensus 205 ~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 205 N---YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred C---ceeeecCCCCcEEEEecccCCcccccch
Confidence 3 5799999999999999999888765543
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=1e-06 Score=110.79 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=163.3
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE-C
Q 001224 368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-S 446 (1120)
Q Consensus 368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~ 446 (1120)
..+++++++..++++-+.++.|.+||... +.+.... ....... .....-.++-..-..|+++++++.|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig----~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIG----STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEc----cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 56899987555788888889999999864 3332100 0000000 00000112233468899999988776654 4
Q ss_pred CCeEEEEEccCCceeeeeee-------eccc-------ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 447 RHIVQIYSYHGGDEVRQHLE-------IDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~-------l~~h-------~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
.+.|+++|..++.... +.. ..+. -..-..++|+|++.. ++++.+.++.|++||..++... .+.
T Consensus 645 n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-EEe
Confidence 5779999988765221 100 0010 112467999995554 6778888899999998877543 222
Q ss_pred cc---------------ccCeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCCceeeeCCCCc-eeEEEEc-CCCCeE
Q 001224 513 GH---------------EAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYS-ADGTRT 574 (1120)
Q Consensus 513 ~h---------------~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s-~~g~~~ 574 (1120)
+. -.....+++++ ++. ++++-+.++.|++||+.+........+.... .....+. .+|...
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 11 11234567654 444 5556666799999998865432111100000 0000110 011000
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC------------CCCCcCeEEEcCCCCEEEEE
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~ 642 (1120)
. ..-.....++++++|+.+++-+.++.|++||..++....... .+ .......++++++|+++++-
T Consensus 800 -~-~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 800 -E-VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred -h-hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0 000123467889999988888899999999998876553331 11 12246789999999998888
Q ss_pred ECCCcEEEEEccCc
Q 001224 643 TNDNGIKILATSDG 656 (1120)
Q Consensus 643 ~~dg~i~iwd~~~~ 656 (1120)
+.++.|++||+.++
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 89999999999876
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=8.6e-07 Score=88.35 Aligned_cols=209 Identities=15% Similarity=0.136 Sum_probs=139.2
Q ss_pred EEEccCCCEEEEEeCCcEEEEEcCCC--ceeeee---cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224 830 FALSKNDSYVMSASGGKISLFNMMTF--KTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 904 (1120)
Q Consensus 830 l~~s~d~~~l~~~sdg~i~vwd~~~~--~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 904 (1120)
++.+.||+.||+..|..|.|=..++. ..+.+. +.....-+.++||| |+.+||.+...|+|++||+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 67789999999999988888766532 122222 22233468899999 99999999999999999987543 3333
Q ss_pred cc-------cccceEEEEEccC------CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224 905 KG-------HSKRITGLAFSHA------LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 971 (1120)
Q Consensus 905 ~~-------h~~~V~~l~~s~d------~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~ 971 (1120)
.. -..+|.+|.|-+- ...|+....+|.++-|-+..+..........+.........|.+++++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 2356777777542 2246677788888888764432222221111111111125899999999999
Q ss_pred EEEEEe----C--------CeEEEEEcCCceeeec---------------------cc----c--CCCCCCeeEEEECCC
Q 001224 972 HFLVVH----E--------TQLAIFETTKLECVKQ---------------------WV----P--RESSAPITHATFSCD 1012 (1120)
Q Consensus 972 ~la~~~----d--------~~v~i~d~~~~~~~~~---------------------~~----~--~~h~~~v~~l~~s~d 1012 (1120)
+|++|+ + -.+.-|.+-.+...-. .. . ..-...|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 888741 1 1466776644321100 00 0 012567899999999
Q ss_pred CcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 1013 SQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1013 g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
|++||+...+|.|.+|++.+.++.....
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999887766
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.2e-06 Score=98.12 Aligned_cols=110 Identities=14% Similarity=0.339 Sum_probs=82.7
Q ss_pred eEEEEecCCCeEEEEEeC----CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 368 MSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 368 ~~v~~spdg~~lla~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
+-..|+|... ++|+++- .|.|.||- ++|+...... . .-.+++++|+|..-.||.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHHhh
Confidence 4457888888 5666643 57788874 4555322100 0 113567999999999999
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
|-.-|.+.+|...+.+. ......|..+|..+.||++|. .++|+..-|.|.+|....
T Consensus 77 gwe~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence 99999999999887542 224557999999999999999 799999999999998763
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.5e-08 Score=111.27 Aligned_cols=270 Identities=13% Similarity=0.178 Sum_probs=168.8
Q ss_pred CcceeeeccCCC--CceEEEEecCCC-eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 354 PKTVTRTLNQGS--SPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 354 ~~~~~~~~~h~~--~v~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
|.+..+.+.|-. .|-.+.|||... .+-++......-.||++.. ++.....-++.||+.+|+
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~----------------ss~~aIef~lhghsrait 118 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK----------------SSSNAIEFVLHGHSRAIT 118 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc----------------CCccceEEEEecCcccee
Confidence 333334444432 455566665431 1233334444555666543 233333336899999999
Q ss_pred EEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-cee
Q 001224 431 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ 508 (1120)
Q Consensus 431 ~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~ 508 (1120)
.+.|.| .-..||+++.|..|..||+.+... .+.....-...-..|+|+--.. .+.+.+....|++||.+.| .++
T Consensus 119 d~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 119 DINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred ccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcce
Confidence 999999 456899999999999999998653 2223334445678899998776 3667777889999999865 567
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
..+++|...|..+.|..... ..+.+.+.||+|++||.+........ .....++..-.+.|-|.-.+ +-
T Consensus 195 ~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~----------~m 263 (1081)
T KOG0309|consen 195 CSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC----------IM 263 (1081)
T ss_pred EEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE----------ec
Confidence 89999999999988764433 36888999999999998765443322 22233455555555554110 00
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcC----------CCCEEEEEECCCcEEEEEccCc
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..-.++.+..-.-+.....|+..+ .+.+..+.+|.. .|...-|-. ..-.|++=+.|..+++|-+.+.
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 011111111122233444566544 357788887654 454444432 1337899999999999987653
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=7.4e-07 Score=86.80 Aligned_cols=241 Identities=13% Similarity=0.087 Sum_probs=152.7
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcee-eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
..+||.|+ .|...+|...+.+.. .....|...|+-+.=.-+...-+..++.|.++++.++.-+.....+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34778876 799999999865543 2333344433322211112234556788999999988765433333222233889
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceee
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 992 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~ 992 (1120)
+++++|++++++.+....|..|.++.............. ...-.+..|+.....+|++ .||.+.|||++.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-----~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-----SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-----CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 999999999999999999999999874332222111111 1234788999999999995 9999999999876433
Q ss_pred eccc---cCCCCCCeeEEEECCCCc--EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001224 993 KQWV---PRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1067 (1120)
Q Consensus 993 ~~~~---~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~ 1067 (1120)
.... -+.|.+.+..+.||+.|- +|+..-.-+.+.|-|+.+++-...+.+....-..|....+. ...|+. ++.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~ 315 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE 315 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence 2221 235899999999998765 34444445889999999998887776444332233333344 556665 344
Q ss_pred EEEEEeCCCcEEEEecCC
Q 001224 1068 EFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1068 ~l~s~~~Dg~v~vW~~~~ 1085 (1120)
.+.+.+++ .+.-|++..
T Consensus 316 s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccch-hhheeeccc
Confidence 44444332 334455544
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=1.7e-06 Score=97.71 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=97.8
Q ss_pred CCceEEEEecCCCeEEEEEeC---CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
..+..-.|||||+++++..+. +..|.++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 377889999999864554333 3569999998887643 22344566778899999988
Q ss_pred EEEE-CC--CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-CcEEEEECCCCceeEEeeccccC
Q 001224 442 GVAY-SR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 442 as~~-~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
+... .+ ..|.++|+.+++..+ +..+.+......|+|||+.+++++...+ ..|.+.|+.+++..+.... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence 7643 33 467888888876332 4444443445689999997444443222 2688888887776443321 111
Q ss_pred eEEEeeccCCCceEEEEEecC---------CeEEEEecCCCC
Q 001224 518 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 550 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~ 550 (1120)
...| +++|+.|+..+.. ..|.+.|+.++.
T Consensus 323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1355 4556666665543 256666665543
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=4.2e-08 Score=118.30 Aligned_cols=200 Identities=15% Similarity=0.219 Sum_probs=152.2
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
+..|-..|.++.=+|...+-++|+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4456678899999999999999999999999999998877654443 33 8999999999999 488888899999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCCCceEEEEEe---cCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEec
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
+. .+.....+.|........|-. ..+++++ .++.+.+||..-..... .-..|.
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~------------------ 2336 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD------------------ 2336 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecC------------------
Confidence 66 677777788888888777754 3566664 36889999875432211 112333
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
+..+++++.|.-..|++|+.+|.|++||++..+.++.++. +. ...++++|+..|.++||++...
T Consensus 2337 ---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~- 2400 (2439)
T KOG1064|consen 2337 ---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF- 2400 (2439)
T ss_pred ---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-
Confidence 3455566666667899999999999999998888776653 33 5678999999999999999766
Q ss_pred hhhhhcc
Q 001224 658 RLLRTFE 664 (1120)
Q Consensus 658 ~~~~~~~ 664 (1120)
..+..+.
T Consensus 2401 ~ll~~~p 2407 (2439)
T KOG1064|consen 2401 GLLHTFP 2407 (2439)
T ss_pred chhhcCc
Confidence 5555443
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=5.2e-06 Score=85.87 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=128.7
Q ss_pred EEEEccCCCEEEEEe------CCcEEEEEcC-CCceeeeecCCCCCeEEEEEecCCCcEEEEEe----------------
Q 001224 829 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 885 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---------------- 885 (1120)
.-+||+||++|.+.. .|.|-|||.. +.+.+..+..+.-....+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 2779999998 7788888888877778888999 887776653
Q ss_pred --CCCcEEEEEeecceeeEe--e--cccccceEEEEEccCCCEEEEEeCCCC-------EEEEECCCcccccceeeeccC
Q 001224 886 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADSQ-------LCVWSSDGWEKQKNRFLQIPT 952 (1120)
Q Consensus 886 --~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~-------v~iWd~~~~~~~~~~~~~~~~ 952 (1120)
.+-++...|..+|+++.+ + ..|..+|..|++.++|..++..-..|. |-+++-.. . ...+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence 123455667788888877 4 348889999999999877665443332 33333222 1 01111111
Q ss_pred CC-CCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc
Q 001224 953 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1024 (1120)
Q Consensus 953 ~~-~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~ 1024 (1120)
.. ......+-+++++++|.+++++ .-+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-Ccc
Confidence 00 1112467899999999988874 66899999999999988765 4567788877777 666554 344
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.72 E-value=4.4e-06 Score=83.41 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=137.0
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEeecc--eeeEee---cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224 871 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 945 (1120)
Q Consensus 871 l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~ 945 (1120)
++.+. +|++||+- .|..|.|-..+.. ..+.+. +...-.-..++||||+..||.+...|+|+++|+...+...-
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888864 5777777654431 222222 22333456799999999999999999999999987443221
Q ss_pred eeeeccCCCCCCCCCCcEEEEccCC-------cEEEEEeCCeEEEEEcCCc-----eeeeccccCC-CCCCeeEEEECCC
Q 001224 946 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-SSAPITHATFSCD 1012 (1120)
Q Consensus 946 ~~~~~~~~~~~~~~~i~~~~fspdg-------~~la~~~d~~v~i~d~~~~-----~~~~~~~~~~-h~~~v~~l~~s~d 1012 (1120)
.......+ ....+|..+.|-+-. ++|+...+|.++-|-+..+ +....+.... +...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11111111 122467777776532 5666688888887776332 2333333323 3778999999999
Q ss_pred CcEEEEEEc----C-------CcEEEEEcCCcceeeeeCCCc---------------------ccCCCCCCCCccceEEE
Q 001224 1013 SQLVYACFL----D-------ATVCVFSAANLKLRCRINPSA---------------------YLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus 1013 g~~l~s~~~----D-------g~v~iwd~~~~~~~~~~~~~~---------------------~~~~g~~~~~v~~~~i~ 1060 (1120)
-++|++|+. | .-+..|.+-++.+-.+.-... +...+.....|+ .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998887762 1 136778776554433211000 000111122244 788
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCC--CCCCCC
Q 001224 1061 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1093 (1120)
Q Consensus 1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~ 1093 (1120)
-|| ||..||+.+.+|.|.+|++++-. +.|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 889 69999999999999999999866 788775
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=2.3e-06 Score=90.39 Aligned_cols=224 Identities=14% Similarity=0.124 Sum_probs=138.2
Q ss_pred CCcEEEEEcCCCceeeeecCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCC
Q 001224 844 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 921 (1120)
Q Consensus 844 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 921 (1120)
+|+|..||..+++.+...... .....+..+ + ++..+++++.++.|+.||..+|+.+..... ...+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999988776531 122222233 3 345666678999999999999998877765 22222212 22455
Q ss_pred EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCC
Q 001224 922 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 1000 (1120)
Q Consensus 922 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h 1000 (1120)
.++.++.|+.+..+|..+|+..........+.. ..........++..++++ .++.|..+|+.+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 666677888999999999876443222111110 011222233336666665 589999999999999777654221
Q ss_pred C--CC------eeEEEECCCCcEEEEEEcCCc-EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224 1001 S--AP------ITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 1001 ~--~~------v~~l~~s~dg~~l~s~~~Dg~-v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
. .. +..-....++ .++.++.++. +.+ |+.+++.+.... ..+ .. . ...+ ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 11 1222233345 6666777775 555 999999664222 111 11 1 1233 4678888
Q ss_pred EeCCCcEEEEecCCCCCCCC
Q 001224 1072 GLSDGGVHVFEPLESEGKWG 1091 (1120)
Q Consensus 1072 ~~~Dg~v~vW~~~~~~~~~~ 1091 (1120)
++.++.|..||+.+|+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999999997774
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=1.2e-05 Score=91.64 Aligned_cols=309 Identities=10% Similarity=0.051 Sum_probs=170.2
Q ss_pred EEEEecCCCcEEEEECCCCceeEEeecccc--CeE-----EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC
Q 001224 487 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 559 (1120)
Q Consensus 487 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 559 (1120)
.++.++.++.+.-+|..+|+.+........ ... .+.-.+.-.+..++.++.+|.+..+|..+++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 366777788999999999988876542210 000 0000011122467778889999999999988887665432
Q ss_pred CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCC---cCeEEEcCCC
Q 001224 560 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDG 636 (1120)
Q Consensus 560 ~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~ 636 (1120)
....+..+ .+..++.++.+|.+..+|..+|+.+........... ..+... .+
T Consensus 151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 21100000 023577788899999999999999888764321000 011111 23
Q ss_pred CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccc
Q 001224 637 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 716 (1120)
Q Consensus 637 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1120)
..++.++.+|.+..+|..++.... ....... .+
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W-~~~~~~~---------------~~------------------------------- 238 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIW-QQRISQP---------------TG------------------------------- 238 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhh-eeccccC---------------CC-------------------------------
Confidence 457778888999999988873221 1110000 00
Q ss_pred cCCCcceeeccCCCcc-eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCC
Q 001224 717 LADVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 795 (1120)
Q Consensus 717 ~~~~~~l~~~~~d~~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 795 (1120)
. ..+ +++++ ...++ + .+..++.++.+|.+..+|..+++
T Consensus 239 ----~--------~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~----- 277 (394)
T PRK11138 239 ----A--------TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ----- 277 (394)
T ss_pred ----c--------cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-----
Confidence 0 000 00000 00000 0 12335555566666666553221
Q ss_pred ccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeEEEEE
Q 001224 796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAF 873 (1120)
Q Consensus 796 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~ 873 (1120)
.+|....+. ...+.. ++..+..++ +|.+..+|..+++.+-...... ....+.++
T Consensus 278 --------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 278 --------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred --------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 234332111 111222 344555555 8999999999887765433211 12223333
Q ss_pred ecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE-EEEccCCCEEEEEeCCCCEEEEEC
Q 001224 874 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 874 sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
. + .+|+.++.||.|++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 334 ~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 Y--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2 3 36677899999999999999988776543333332 222 2457888899998887754
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=3.5e-07 Score=90.64 Aligned_cols=225 Identities=15% Similarity=0.209 Sum_probs=139.7
Q ss_pred CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc--eeeeeeeeccccc------------CeEEEEEcCCCCceEEEE
Q 001224 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT 490 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~--~~~~~~~l~~h~~------------~V~~v~~s~d~~~~~l~s 490 (1120)
....|+++.|...|.||++|...|.|.+|.-+... ..+-..++++|.. .|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999766432 1222234555543 488899988776656777
Q ss_pred ecCCCcEEEEECCCCce-------------------------------------e-----EEe-eccccCeEEEeeccCC
Q 001224 491 CGDDKTIKVWDATNGAK-------------------------------------Q-----YIF-EGHEAPVYSVCPHHKE 527 (1120)
Q Consensus 491 ~s~d~~i~vwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~~~~~~~~ 527 (1120)
.+.|++|++|.+..... + +.. ..|.-.|.++.+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 88899999998754310 0 001 24555667777643
Q ss_pred CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC-CEEEEEeCCCeEEE
Q 001224 528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF 606 (1120)
Q Consensus 528 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i 606 (1120)
+...++++ .|-.|.+|+++-......+. .+-|..- ..-...++...|+|.. +.+.-.+..|.|++
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIV---------DiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIV---------DIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEE---------eccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 33455554 57889999887543332211 1111100 0000122333344433 34555778899999
Q ss_pred EECCCCce------eEEE--ecC------CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccc
Q 001224 607 WDMDSVQL------LTSI--DAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 666 (1120)
Q Consensus 607 wd~~~~~~------~~~~--~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 666 (1120)
-|++.... +... .+. .-...|..+.|+++|+++++-+. -++++||++....+++++.-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99974321 1111 111 11245788999999999987665 689999998876676666443
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=2.2e-05 Score=81.38 Aligned_cols=208 Identities=15% Similarity=0.103 Sum_probs=140.0
Q ss_pred CccEEEEcc-CCCEEEEEe-CC-cEEEEEcCCCceeeeecCCCCCe--EEEEEecCCCcEEEEEeC-----CCcEEEEEe
Q 001224 826 AVPCFALSK-NDSYVMSAS-GG-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGMD-----DSSIQIYNV 895 (1120)
Q Consensus 826 ~v~~l~~s~-d~~~l~~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~~-----dg~v~vwd~ 895 (1120)
....++.+| ....++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 344688888 455555665 44 48999999999888876554432 2578999 8988887643 478999999
Q ss_pred e-cceeeEeecccccceEEEEEccCCCEEEEEeC------------------CCCEEEEECCCcccccceeeeccCCCCC
Q 001224 896 R-VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTP 956 (1120)
Q Consensus 896 ~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 956 (1120)
. +.+.+.++..|.-.-..+.+.|||+.|+.+.. +-.+..-|..+|+......+.. ..|.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~- 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ- 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc-
Confidence 9 67788888877666667889999988776532 1234445555554432222211 1122
Q ss_pred CCCCCcEEEEccCCcEEEEE-eCC-------eEEEEEcCCceeeecccc-----CCCCCCeeEEEECCCCcEEEEEE-cC
Q 001224 957 TAQSDTRVQFHQDQIHFLVV-HET-------QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACF-LD 1022 (1120)
Q Consensus 957 ~~~~i~~~~fspdg~~la~~-~d~-------~v~i~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~-~D 1022 (1120)
.+|..+++.++|..++.. ..+ -|.+++... .+..+.. ..-...|-+|+++++|.++++.+ .-
T Consensus 163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 378999999999877763 221 244444333 2222221 12367899999999999886555 55
Q ss_pred CcEEEEEcCCcceeeeeC
Q 001224 1023 ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1023 g~v~iwd~~~~~~~~~~~ 1040 (1120)
+.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 789999999999997665
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=9.1e-06 Score=91.95 Aligned_cols=208 Identities=8% Similarity=0.028 Sum_probs=126.9
Q ss_pred cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc-EEEEEeC---CCcEEEEEeecceeeEeecccccceEEEEEccCCC
Q 001224 846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 921 (1120)
Q Consensus 846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~---dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 921 (1120)
.|.+-|..... .+.+.... .+....|+| |++ .++..+. +..|+++|+.+++... +....+......|+|||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCC
Confidence 45665654433 33333233 678899999 776 3654433 3469999998876543 333455566788999998
Q ss_pred EEEE-EeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC----eEEEEEcCCceeeec
Q 001224 922 VLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ 994 (1120)
Q Consensus 922 ~l~s-~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~----~v~i~d~~~~~~~~~ 994 (1120)
.|+. .+.+ ..|.++|+.+++. ..+....+ ......|+|||+.|+...+. .|.+.|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~---~~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL---TQITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE---EEcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 7764 4334 4577778777542 12222211 12455899999988885443 788999988877544
Q ss_pred cccCCCCCCeeEEEECCCCcEEEEEEcC---------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 995 WVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 995 ~~~~~h~~~v~~l~~s~dg~~l~s~~~D---------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
... +. ....|||||++|+..+.. ..|.+.|+.+++.. .+.. + .. .. ...|+| |
T Consensus 317 t~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~------~--~~-~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA------N--GV-NQ--FPRFSS-D 378 (419)
T ss_pred ccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC------C--CC-cC--CeEECC-C
Confidence 321 11 124899999998876643 26888899888754 3331 1 01 11 478999 5
Q ss_pred CCEEEEEeCC-CcEEEEecC
Q 001224 1066 PNEFALGLSD-GGVHVFEPL 1084 (1120)
Q Consensus 1066 ~~~l~s~~~D-g~v~vW~~~ 1084 (1120)
|+.|+..+.+ +.-.+|-+.
T Consensus 379 G~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CCEEEEEEccCCcEEEEEEe
Confidence 7776655443 443344433
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.65 E-value=1.7e-05 Score=90.45 Aligned_cols=211 Identities=9% Similarity=0.005 Sum_probs=120.1
Q ss_pred CCcEEEEEcCCCceeeeecCCCCCe-----EEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc----c---ce
Q 001224 844 GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----K---RI 911 (1120)
Q Consensus 844 dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~----~---~V 911 (1120)
++.|..+|..+|+.+-.+....... .+-... ++ .++.++.+|.+..+|..+|+.+....... . ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 5666666666666655543221100 111122 23 45567788999999988887665432110 0 01
Q ss_pred EEEEEcc--CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001224 912 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 989 (1120)
Q Consensus 912 ~~l~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~ 989 (1120)
..+.-+| .+..++.++.+|.+..+|..+++....... + ....+.. .++..++...++.+..+|..+|
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 245677777899999999998865332211 1 1111222 2444445568899999999998
Q ss_pred eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224 990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus 990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
+.+-...... .....+... .+.+|+.++.||.|++.|..+|+.+.+.+. ..+ . +.. +.... +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~--~~s-~P~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--G--FLS-EPVVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--c--cee-CCEEE---CCEE
Confidence 7654322111 111222222 256677889999999999999999887652 111 0 110 11121 3588
Q ss_pred EEEeCCCcEEEEec
Q 001224 1070 ALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1070 ~s~~~Dg~v~vW~~ 1083 (1120)
+.++.||.|+.++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88999999998875
No 299
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.64 E-value=0.0028 Score=74.09 Aligned_cols=555 Identities=10% Similarity=0.083 Sum_probs=275.7
Q ss_pred EcCCCCeEEEEECCCeEEEEEcc-CCceeee---eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-
Q 001224 434 WSPDGSLFGVAYSRHIVQIYSYH-GGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ- 508 (1120)
Q Consensus 434 ~spdg~~las~~~dg~v~iwd~~-~~~~~~~---~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~- 508 (1120)
...+|.+.+.|..+|.+...-+. +++.... ...+-|...-..|+..-++|- +..||.-|.=.+-.+.+..-.
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~---lFvGS~~gdSqLi~L~~e~d~g 341 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGV---LFVGSRFGDSQLIKLNTEPDVG 341 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCce---EEEeccCCceeeEEccccCCCC
Confidence 45577788888888877766554 3332221 123345556677788887774 888887776566555432221
Q ss_pred ------EEeeccccCeEEEeeccCC--CceEEEEEe---cCCeEEEEecCCCCCc---eeeeCCCCceeEEE--------
Q 001224 509 ------YIFEGHEAPVYSVCPHHKE--NIQFIFSTA---LDGKIKAWLYDNLGSR---VDYEAPGRWCTTMA-------- 566 (1120)
Q Consensus 509 ------~~~~~h~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~-------- 566 (1120)
.++. .-++|..++..... ....+++++ .||++|+..-.-+-.. ..+.+ -..++.+.
T Consensus 342 sy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d 419 (1096)
T KOG1897|consen 342 SYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYD 419 (1096)
T ss_pred chhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCC
Confidence 2333 34678887765433 233555554 3788887632211000 00011 00111111
Q ss_pred ---------------EcCC--------------------------------CCeEEecc-------cccceeEEEEcCCC
Q 001224 567 ---------------YSAD--------------------------------GTRTYQGF-------RKRSLGVVQFDTTK 592 (1120)
Q Consensus 567 ---------------~s~~--------------------------------g~~~~~~~-------~~~~i~~~~~~~~~ 592 (1120)
.+++ +-+++.+. ....+.+...+.+.
T Consensus 420 ~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~ 499 (1096)
T KOG1897|consen 420 NYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANA 499 (1096)
T ss_pred cEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecc
Confidence 1111 11111111 00112222223333
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC--C----CEEEEEECCCcEEEEEccCcchhhhh--cc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRT--FE 664 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~--~~ 664 (1120)
..++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.......... +.
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~ 578 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS 578 (1096)
T ss_pred eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC
Confidence 455556655666655655444 222222222346888989873 2 27888877766655433222111111 11
Q ss_pred cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc--CCC
Q 001224 665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE--LSE 742 (1120)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~--~~~ 742 (1120)
+... ++...+.+ +..+..+|.++..||.+.-|-+.. +..
T Consensus 579 ~~~i---------------------------------PRSIl~~~------~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 579 GEII---------------------------------PRSILLTT------FEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred CCcc---------------------------------chheeeEE------eeccceEEEEEcCCceEEEEEEEcccceE
Confidence 0000 00011111 112367899999999887665543 222
Q ss_pred CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224 743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 822 (1120)
Q Consensus 743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 822 (1120)
....+. .-...++.--.|+..++.-+.+.+|.-..+|..+ +.++...+.- .
T Consensus 620 sd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls~-k 670 (1096)
T KOG1897|consen 620 SDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLSL-K 670 (1096)
T ss_pred cccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccch-H
Confidence 111110 1133455555666655555555555444444321 1111100000 0
Q ss_pred CCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeC-----------C--
Q 001224 823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D-- 887 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~-----------d-- 887 (1120)
.-..+....-+.-...++++..+.+++.-++.-+. ++++. -......+++.+ ....+++.+. .
T Consensus 671 ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~ 748 (1096)
T KOG1897|consen 671 EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYE 748 (1096)
T ss_pred HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcce
Confidence 00111111111223467777777777777664332 23433 223455666665 3444443331 1
Q ss_pred -CcEEEEEeecceeeEeecc--c--ccceEEEEEccC-CCEEEEEeC----------CCCEEEEECCCcccccceeeecc
Q 001224 888 -SSIQIYNVRVDEVKSKLKG--H--SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIP 951 (1120)
Q Consensus 888 -g~v~vwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~ 951 (1120)
..++++|-++.+.+...+- - -..|.++.|..| +.+++.|.. .|.|.|+.+......+...-...
T Consensus 749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV 828 (1096)
T ss_pred EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence 1366677666554432211 1 123555568877 677777753 36677777766222111111111
Q ss_pred CCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 952 TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 952 ~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
. +.+.++.. -+|+ ++++-...|++|++.+.+.++.-. .|..++..+...-.|..+++|..=+.+.+-...
T Consensus 829 ~------Gav~aL~~-fngk-llA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 829 K------GAVYALVE-FNGK-LLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred c------cceeehhh-hCCe-EEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 1 12222221 2444 445567799999999886665543 568889999999999999999877776665554
Q ss_pred Ccc--eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1032 NLK--LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1032 ~~~--~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
..+ ..-.-. .+.| -+.+++.+-. ++.++.+..+|.+++-...+
T Consensus 899 ~~eg~f~evAr--D~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 899 GDEGNFEEVAR--DYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ccCCceEEeeh--hhCc-------cceeeEEEec--CceEEeecccccEEEEEecC
Confidence 433 442211 2222 2333666663 56777788899999887654
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.64 E-value=3.1e-07 Score=90.97 Aligned_cols=159 Identities=14% Similarity=0.250 Sum_probs=108.6
Q ss_pred CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCc---eeeeecCCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224 822 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMATFMPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIY 893 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~---~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vw 893 (1120)
.|..-+.++.|..|...++++.|=.|.+|++.-.. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 37778999999999999999999999999986322 123344443 3488999999878888889999999999
Q ss_pred Eeecceee--------Ee--------ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC--
Q 001224 894 NVRVDEVK--------SK--------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-- 955 (1120)
Q Consensus 894 d~~~~~~~--------~~--------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-- 955 (1120)
|++...+. .. +.+-.+.|..+.|+++|+++++-+. -+|+|||+...+.. +.+..-|.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p----ikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP----IKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC----ceeechHHHH
Confidence 99742211 01 1223357888999999999987654 56999999875432 22221110
Q ss_pred ----------CCCCCCcEEEEccCCcEEEEE-eCCeEEEEE
Q 001224 956 ----------PTAQSDTRVQFHQDQIHFLVV-HETQLAIFE 985 (1120)
Q Consensus 956 ----------~~~~~i~~~~fspdg~~la~~-~d~~v~i~d 985 (1120)
.....-..+.||.|.+.+.+| .....-+|-
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 000112457888888887774 444454554
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=5.9e-06 Score=80.72 Aligned_cols=232 Identities=11% Similarity=0.022 Sum_probs=151.4
Q ss_pred CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224 635 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 714 (1120)
Q Consensus 635 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1120)
...+|+.|+..|.+.+|...+.....+....+...+.. .-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~----------------------------------------~~ 122 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL----------------------------------------VK 122 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhh----------------------------------------hh
Confidence 45689999999999999988763333333222221110 00
Q ss_pred cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc--cEEEEEEcCCCceEEEeccCceEEEeeecccccC
Q 001224 715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT--KISRLIFTNSGNAILALASNAIHLLWKWQRTERN 792 (1120)
Q Consensus 715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 792 (1120)
..-.....+..++.|.++++.++......... |.. .+.++.+++|++++++.+....|..|.+..+...
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey 193 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY 193 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCccccee---------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce
Confidence 01112234567778888888888754332222 222 3788999999999999999999999987543211
Q ss_pred CCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceee-----eecCCCC
Q 001224 793 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPP 866 (1120)
Q Consensus 793 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~-----~~~~~~~ 866 (1120)
...... ....+.-.+..|+.....+|++. ||++.|||++...... +-..|.+
T Consensus 194 --------------------~~~~~~--a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 194 --------------------IENIYE--APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred --------------------eeeeEe--cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence 111001 11344456788999999999999 9999999998644322 2345788
Q ss_pred CeEEEEEecCCC--cEEEEEeCCCcEEEEEeecceeeEeec-------cccc-ceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224 867 AATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLK-------GHSK-RITGLAFSHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 867 ~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~-------~h~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 936 (1120)
.+..+.|++ .| .+|...-.-+.+.|-|++++.-.+.+. .|.. .|..-.|+.++..+.+.+++. +.-|+
T Consensus 252 a~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~n 329 (344)
T KOG4532|consen 252 AFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYN 329 (344)
T ss_pred ceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheee
Confidence 999999997 44 355555556789999999876544432 2333 388888988887777666554 56677
Q ss_pred CCC
Q 001224 937 SDG 939 (1120)
Q Consensus 937 ~~~ 939 (1120)
+..
T Consensus 330 i~s 332 (344)
T KOG4532|consen 330 ILS 332 (344)
T ss_pred ccc
Confidence 665
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=4.8e-07 Score=87.77 Aligned_cols=210 Identities=12% Similarity=0.157 Sum_probs=127.8
Q ss_pred ceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC
Q 001224 367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 446 (1120)
Q Consensus 367 v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 446 (1120)
|+.+.|+.+- .|+++..++.+......++..... |+-. ....+.+.+..|.++=.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt--~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERD--DGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcc--cCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 6666666654 588888888888777665544431 1111 111122234456655555555667889999999
Q ss_pred CCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEec-----CCCcEEEEECCCCceeEEeeccccCeEE
Q 001224 447 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 520 (1120)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 520 (1120)
||.+.+.+.+.-..+. .... .|.+ -.+.+....+. ++.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1211 11222233344 233322 1234456665533322211112234889
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
+|-+|... +.+++|+.||.+-+||++...... .+..|...+..+.|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99887665 688889999999999999864333 4566777788888877654 5799999
Q ss_pred CCCeEEEEECCC
Q 001224 600 DDFSIKFWDMDS 611 (1120)
Q Consensus 600 ~dg~i~iwd~~~ 611 (1120)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999864
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=3.5e-07 Score=94.73 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=112.7
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCCce-eeeeeeecccccCeEEEEEcCCCCce-EEEEecCCCcEEEEECCCC
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQL-CVITCGDDKTIKVWDATNG 505 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~-~l~s~s~d~~i~vwd~~~~ 505 (1120)
.+..+..++++++||++..+....++++..... .+..... .-...-+++.|..+.... +...+++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445566778888888888877777776654432 1111111 112233444454444431 3334556677888887765
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
.+. .+-||-..+..+++++++ ++|+++..|..|++-.....-.+..+ -+|...|..++..++.
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~------------- 206 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY------------- 206 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-------------
Confidence 543 455799999999986544 89999999999998877654444443 3477777777776654
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
.|+++|.|++|++||+.+|+.+.++..
T Consensus 207 ---------~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 207 ---------LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ---------eeeecCCCCcEEEEecccCCcccccch
Confidence 389999999999999999998877653
No 304
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=0.00026 Score=69.32 Aligned_cols=146 Identities=9% Similarity=-0.010 Sum_probs=96.0
Q ss_pred EEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC
Q 001224 478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 557 (1120)
Q Consensus 478 ~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 557 (1120)
...+|.+. +++.|+..+.+.--|.++|+.+..-. -...|.+-+.. -|++++.|+..|.+.+.+..++...+.+..
T Consensus 17 VV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 17 VVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred EEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 34456565 78889999999999999998875432 22344433322 225799999999999999998877665543
Q ss_pred CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
.+.-- .....++++..+..++.|+..+..|..+..++...+..+. ...+-++.|-..
T Consensus 92 ~~~vk---------------------~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~ 148 (354)
T KOG4649|consen 92 LETVK---------------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDG 148 (354)
T ss_pred hhhhc---------------------cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCc
Confidence 22100 1123455667899999999999999999999988775554 234455666333
Q ss_pred EEEEEECCCcEEEE
Q 001224 638 LLAVSTNDNGIKIL 651 (1120)
Q Consensus 638 ~l~~~~~dg~i~iw 651 (1120)
.|..+...|.+.--
T Consensus 149 sly~a~t~G~vlav 162 (354)
T KOG4649|consen 149 SLYAAITAGAVLAV 162 (354)
T ss_pred eEEEEeccceEEEE
Confidence 34444444554433
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=0.00016 Score=76.51 Aligned_cols=226 Identities=19% Similarity=0.212 Sum_probs=141.4
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc-CCCCeEEEEEC
Q 001224 368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 446 (1120)
Q Consensus 368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~ 446 (1120)
.+++|.+....|+++.-..+.|..|+..+++.... ... ....+++. ++|+ |+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~-l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGR-LYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSE-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCE-EEEEEc
Confidence 36789985555788888899999999998875431 111 26777777 5654 555555
Q ss_pred CCeEEEEEccCCceeeeeeeec--c-cccCeEEEEEcCCCCceEEEEecCC--------CcEEEEECCCCceeEEeeccc
Q 001224 447 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~d~~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
++ +.++|..+++.. .+.... . .....+.+++.++|. +.++.... |.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 55 555699988643 333332 2 345789999999999 56665433 457777766 55443333 34
Q ss_pred cCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc--cceeEEEEcCCC
Q 001224 516 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK--RSLGVVQFDTTK 592 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~--~~i~~~~~~~~~ 592 (1120)
.....++|+++ ++.| ++-+..+.|..+++.......... +.+..... +....++++.+|
T Consensus 134 ~~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 134 GFPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNR----------------RVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp SSEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEE----------------EEEEE-SSSSCEEEEEEEBTTS
T ss_pred ccccceEECCc--chheeecccccceeEEEeccccccceeee----------------eeEEEcCCCCcCCCcceEcCCC
Confidence 55678898654 4555 466678889888886544311100 00000000 124456677777
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEE
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 643 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 643 (1120)
+..++....+.|.+++.+ |+.+..+.... ..+++++|. ++.+.|++.+
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 777777789999999987 88888887653 368999994 6767666554
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=4.4e-05 Score=80.79 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=138.1
Q ss_pred cEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224 828 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 828 ~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 905 (1120)
.+++|.+ ++.++++.. .+.|..|+..++.... +... ....+++...+++++++ .. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 3577887 555555544 7889999998866533 2212 27888888326666554 43 456666988875443332
Q ss_pred c-----cccceEEEEEccCCCEEEEEeCC--------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224 906 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 906 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
. .....+.+++.++|++.++.... |.|..++.. ++. ....... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988776544 345555555 221 1122111 13478999999998
Q ss_pred EEEE--eCCeEEEEEcCCcee----eecc-ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCccc
Q 001224 973 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1045 (1120)
Q Consensus 973 la~~--~d~~v~i~d~~~~~~----~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~ 1045 (1120)
|.++ ..+.|..|++..... ...+ ......+..-.+++..+|++.++....+.|.+++.+ |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 8764 667899998863221 1112 111212358899999999988888888999999987 99988887 4
Q ss_pred CCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224 1046 PAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
|. -.+..++|...|.+.|+..+
T Consensus 223 p~------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 PV------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SS------SSEEEEEEESTTSSEEEEEE
T ss_pred CC------CCEEEEEEECCCCCEEEEEe
Confidence 41 13558999643555555443
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=3.7e-07 Score=100.79 Aligned_cols=242 Identities=13% Similarity=0.201 Sum_probs=152.7
Q ss_pred ccccccCCCCcCCCCcCCCCCCCCCcceee--eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceee
Q 001224 330 LPVSFTGHSHSHSHSQAFSTPEDLPKTVTR--TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV 407 (1120)
Q Consensus 330 w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~ 407 (1120)
|.|+.++.. ..+|.......+.+. +-+|+..|+.+-|+|....++|+.+.|..|..||+.+..... -.
T Consensus 84 wiVsts~qk------aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys 153 (1081)
T KOG0309|consen 84 WIVSTSNQK------AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YS 153 (1081)
T ss_pred eEEecCcch------hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----ee
Confidence 666666544 233333333333333 335899999999999998899999999999999998754322 11
Q ss_pred eccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCce
Q 001224 408 WDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 486 (1120)
Q Consensus 408 ~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~ 486 (1120)
| ..-...-..|+|+- ++..|| .+....|.+||...|.... ..+++|...|+.++|+.--..
T Consensus 154 ~--------------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s- 215 (1081)
T KOG0309|consen 154 T--------------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYS- 215 (1081)
T ss_pred e--------------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcce--EEecccceeeehHHHhhhhhh-
Confidence 1 11223556788987 454444 4556779999999776432 367889999999999765332
Q ss_pred EEEEecCCCcEEEEECCCCce--eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC----------CCCcee
Q 001224 487 CVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----------LGSRVD 554 (1120)
Q Consensus 487 ~l~s~s~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~ 554 (1120)
.+.+++.|++|+.||...... .++.. ...+|+--++.|-.+|.++.---.+..+.+++.++ ..++.+
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~ 294 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT 294 (1081)
T ss_pred hhcccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee
Confidence 589999999999999764322 22222 34566666666666654443333333444443332 234556
Q ss_pred eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001224 555 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS 611 (1120)
Q Consensus 555 ~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 611 (1120)
+.+|...|....|-..+.. .-.+....-.|++-+.|..+++|-+.+
T Consensus 295 F~GH~D~V~eFlWR~r~e~-----------~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 295 FVGHDDVVLEFLWRKRKEC-----------DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ecCcchHHHHHhhhhcccc-----------cCCCCccceeEEEeecCCceEeeeccH
Confidence 6777666655555333220 011122223689999999999998754
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.8e-06 Score=87.93 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=142.2
Q ss_pred CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC-CCcEEEEECC
Q 001224 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDAT 503 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~ 503 (1120)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-...+..|.+.|.+++.+-++. ++.|.+. |+.++++|+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 67777766554 467999999999999997654222333345778999999999999998 7888777 9999999998
Q ss_pred CCceeEEeec--cccCeEEEeeccCC-Cc--eEEEEEecCCeEEEEecCCCCCce--eeeCCCCceeEEEEcCCCCeEEe
Q 001224 504 NGAKQYIFEG--HEAPVYSVCPHHKE-NI--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 504 ~~~~~~~~~~--h~~~v~~~~~~~~~-~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
+-..+..++- -.+.+ +|...+ +- ..-++.-.++.+.++|-....+.. .-..|..
T Consensus 85 n~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s---------------- 145 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS---------------- 145 (558)
T ss_pred ccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC----------------
Confidence 7665533321 12222 222222 11 122333457889999876544322 2223334
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeEEEecC-------CCCCCcCeEEEcCCCCEEEEEE
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSIDAD-------GGLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
++.++.+.+.+..+++....|.|.-|.... .+....++.+ .......++.|+|+|..+.+-.
T Consensus 146 -----PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 146 -----PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred -----ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 444555555556788888899999998862 2222222211 1223567899999999999999
Q ss_pred CCCcEEEEEccCcchhhhhccc
Q 001224 644 NDNGIKILATSDGIRLLRTFEN 665 (1120)
Q Consensus 644 ~dg~i~iwd~~~~~~~~~~~~~ 665 (1120)
.|..|++++..++ ++++.+..
T Consensus 221 ~DrkVR~F~~KtG-klvqeiDE 241 (558)
T KOG0882|consen 221 PDRKVRGFVFKTG-KLVQEIDE 241 (558)
T ss_pred cccEEEEEEeccc-hhhhhhhc
Confidence 9999999999998 66666543
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=9.3e-06 Score=91.33 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=85.7
Q ss_pred EEEEEcCCCCeEEEEEC----CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224 430 NRVIWSPDGSLFGVAYS----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 505 (1120)
Q Consensus 430 ~~l~~spdg~~las~~~----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~ 505 (1120)
+-.+|+|...++|+++- .|.|.||- ++|+.-+ ..+.. -.+++++|.|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P---~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYP---VHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-ccccc---eehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34578888888888763 47888884 3443222 11222 2356799999866 7888888999999998887
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 553 (1120)
+.-.....|..+|..+.|++ +|..++++..-|.+.+|..+..+...
T Consensus 92 e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccc
Confidence 77777778999999999854 55799999999999999887544433
No 310
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.48 E-value=6e-07 Score=85.70 Aligned_cols=134 Identities=23% Similarity=0.232 Sum_probs=98.7
Q ss_pred HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001224 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1120)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1120)
...++++|++|+++.|++.+......-....+ .+.|.|++|+|+|++..++..+|+.+.|+++.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 57899999999999999999987322111113 38999999999999999999999999999997665445678888888
Q ss_pred Hhccccccc--hhhhccCCCchHHHHHHHHHHHhhcccCCCcccccCCCCCc-chHHHHHHHHHHHHH
Q 001224 118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 182 (1120)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~~~~~~q 182 (1120)
+|....... ...+..+-+ ...|.++.+.+.+.+-...- +| ...|+.++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888776654 223333322 36789999988887655332 33 457888888765543
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.00042 Score=67.92 Aligned_cols=146 Identities=11% Similarity=0.076 Sum_probs=96.3
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 449 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~ 449 (1120)
+..-+|.+.+++.|++.+.+.--|.++|+..-+.- + ..+|-+-+.- -|++++.|...|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCc
Confidence 34556777789999999999999999998765311 1 1233332222 4788999999999
Q ss_pred EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCc
Q 001224 450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529 (1120)
Q Consensus 450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 529 (1120)
+++-+.++|.+......+.. -.+ .....+++. ++..|+.|++.+.-|.++..++...+--.+...+-++.+. ++
T Consensus 75 lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~ 148 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG 148 (354)
T ss_pred EEEEEecchhheeeeeehhh--hcc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc
Confidence 99999999976654433221 111 233456777 7999999999999999999999887643333223333332 22
Q ss_pred eEEEEEecCCeEEE
Q 001224 530 QFIFSTALDGKIKA 543 (1120)
Q Consensus 530 ~~l~s~~~dg~i~i 543 (1120)
.|+.+...|.+.-
T Consensus 149 -sly~a~t~G~vla 161 (354)
T KOG4649|consen 149 -SLYAAITAGAVLA 161 (354)
T ss_pred -eEEEEeccceEEE
Confidence 3444444555543
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=6e-07 Score=90.64 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=123.1
Q ss_pred EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeE
Q 001224 371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 450 (1120)
Q Consensus 371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v 450 (1120)
+||-.-.-.-++.+.+-.|.+-|+++|-... +. ..+.|.++.|...+.++..|..+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 5653322112334456778888998876543 22 56689999999999999999999999
Q ss_pred EEEEccCCce--eeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCce---eEEeeccccCeEEEeec
Q 001224 451 QIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 451 ~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~ 524 (1120)
...|++.+.+ ..+...+ -|...|+++.... +++ +|++.+.+|.|++||.+.-++ +.++.||-+.-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999986521 1111122 4889999998877 555 799999999999999987776 89999998776666666
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 559 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 559 (1120)
.++....+++++.|...|+|.++.+....++..+.
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 66666789999999999999999877766655443
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.47 E-value=3e-05 Score=81.84 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=136.2
Q ss_pred CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeee
Q 001224 386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465 (1120)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~ 465 (1120)
+|+|..||..+|+.+-+..+. .+.. ...+. ..+++.++++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 689999999999988653221 0111 11211 3346778888899999999999999876533
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-ecccc---CeEEEeeccCCCceEEEEEecCCeE
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 541 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i 541 (1120)
.+.+..... ....++. ++.++.++.|+.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 ~~~~~~~~~---~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 DLPGPISGA---PVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp ECSSCGGSG---EEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred eccccccce---eeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 222221111 2223333 566667889999999999999884 32211 1111111112 3578888889999
Q ss_pred EEEecCCCCCceeeeCCCCce-eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224 542 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 542 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
..+|..+++.+.......... ..+.... ....-....++ .++.++.++.+..+|+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFS------------DINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEET------------TEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeec------------ccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988777665533211 0000000 01111111123 57777777754444999998665333
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 621 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 621 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
.. .+.. ....++..|++++.++.+..||..+++
T Consensus 201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 21 1222 245678888888899999999999984
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=1.8e-06 Score=83.98 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=119.8
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEeecceee------------EeecccccceEEEEEccCCCEEEEEeCCCCEEEE
Q 001224 868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK------------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935 (1120)
Q Consensus 868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iW 935 (1120)
++.+.++. ...|+++..++.+..+....+.+. +.+..|+++-.+-+.+--+..++++..||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 66666763 456777777777666655444333 2233343333333333346789999999999999
Q ss_pred ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE------eCCeEEEEEcCCceeeeccccCCCCCCeeEEEE
Q 001224 936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSAPITHATF 1009 (1120)
Q Consensus 936 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~ 1009 (1120)
+.+.-.... .+....+. .-.+.++-..++.+.++ .-+..+.|+++..+....-. .....|++++-
T Consensus 117 s~~~~~~~~---~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLALM---SRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS 187 (319)
T ss_pred echHHHhhh---hhcccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence 987621111 11111111 11233333455555553 23455666665433221111 11345999998
Q ss_pred CCCCc-EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1010 SCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1010 s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
.|..+ .+++|+.||.+-+||.........+ +..+ ...++ .+.|+|.++..|+++++||.+..||-++
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-----l~ah--k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-----LKAH--KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHH-----HHHh--hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 88655 5678889999999999887444322 2211 33366 7999999999999999999999999774
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.4e-06 Score=91.00 Aligned_cols=213 Identities=13% Similarity=0.088 Sum_probs=153.6
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeEeecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCC
Q 001224 864 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 939 (1120)
Q Consensus 864 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~ 939 (1120)
|...|+.+..+. .+++.+++-||.++.|.-.. -+.+..+..|.+.|.+++.+.|+.++.|++. |..++++|++.
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 677788877664 67999999999999997543 2455667889999999999999999999877 99999999988
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEccCC--cEEEEE--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE
Q 001224 940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg--~~la~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1015 (1120)
-.......+..+++ --.+..++.. ..++++ .++.+.++|-..+.|.....-.-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 54432222222222 1122223321 244553 778999999887776555555678999999999999999
Q ss_pred EEEEEcCCcEEEEEcCC------cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1016 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1016 l~s~~~Dg~v~iwd~~~------~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+++....|.|.-|.... .++...++...++-. --...-.+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~-f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG-FPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhc-ccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99998899999999873 222222222222211 111223466899999 68999999999999999999988
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=5.5e-05 Score=79.31 Aligned_cols=207 Identities=17% Similarity=0.174 Sum_probs=130.8
Q ss_pred ccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee-cceeeE
Q 001224 827 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 902 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~ 902 (1120)
...++++.||+++.+.. .-.|.|.|+...+.+..+... .+..+- |...+-+.+-|.||.+.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 44578999999999876 477999999999988877632 222222 3234457778889999988887 354432
Q ss_pred e----ecccccceE-EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCC----CCCCCCCCcEEEEccCCcEE
Q 001224 903 K----LKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHF 973 (1120)
Q Consensus 903 ~----l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~fspdg~~l 973 (1120)
+ |..-.+++. .-+++.++..++-.+.+|.|+--|+................ ..-.++.-.-+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 222222222 33445555566667888888888877654333222222110 00011345668888876665
Q ss_pred EE----EeCC-------eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224 974 LV----VHET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 974 a~----~~d~-------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
.+ +.++ .|.+||+.+++.+..+.. ..++.+|..|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 55 2222 599999999999998875 34688999999888 555444 57899999999999999887
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=6.7e-07 Score=62.99 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.2
Q ss_pred ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 936 (1120)
|+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=88.12 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=111.2
Q ss_pred EEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCC
Q 001224 882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 961 (1120)
Q Consensus 882 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i 961 (1120)
++.+.+..|-+-|+.+|- ...|. ..+.|.++.|...++++..|+..|.|...|++........+.+.+-.. .+|
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----SSV 301 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----cch
Confidence 344556778888888764 24444 567799999999899999999999999999988633333333222211 357
Q ss_pred cEEEEcc-CCcEEEE-EeCCeEEEEEcCCcee---eeccccCCCC--CCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 962 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRESS--APITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 962 ~~~~fsp-dg~~la~-~~d~~v~i~d~~~~~~---~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
+++..-. ++.+|.+ +.+|+|++||.+.-++ +.++. +|- ..-.-+.+.+....+++++.|...|||.+..|.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 7776655 5556655 6999999999988777 66665 553 333344556677889999999999999999999
Q ss_pred eeeeeC
Q 001224 1035 LRCRIN 1040 (1120)
Q Consensus 1035 ~~~~~~ 1040 (1120)
+++.++
T Consensus 380 Ll~tip 385 (425)
T KOG2695|consen 380 LLCTIP 385 (425)
T ss_pred eeeccC
Confidence 999988
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=5.1e-05 Score=86.01 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=116.3
Q ss_pred EccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeEeec
Q 001224 832 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 832 ~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~ 905 (1120)
+++||+.+...+ .+.+.+.|.++.+...++.-. +....++++| +++++++.+.+. ++..-+......+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456777665444 577889999987777666532 3456789999 888887775321 22222221111111111
Q ss_pred ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc-ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEE
Q 001224 906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 982 (1120)
Q Consensus 906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~ 982 (1120)
-. .+ -++.++|++... .++.|.+.|..+..... ......+-+. ....+.+||||++++++ .+..|.
T Consensus 278 i~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 278 IA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred hH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence 00 00 133457877665 36779999988711001 1122223332 45889999999999994 678999
Q ss_pred EEEcCCcee------------eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 983 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 983 i~d~~~~~~------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
|+|+.+.+. +.+... .......+|.++|....+-..|..|..|++.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999988653 333322 33456779999999888888999999999987
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.38 E-value=0.0013 Score=78.45 Aligned_cols=275 Identities=14% Similarity=0.127 Sum_probs=150.9
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
..|..+.|..+.+.++.+..+|.|.+-|..+......-... ..|.+++||||+.+++..+..+++.+-.-.-..-..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 35667777777788999999999999988876543332222 358999999999999999998888765421110001
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
+.+ +.+.-. ....+..+....-.-+....+
T Consensus 146 ~~L--~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 146 KPL--DADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred ccc--cccccc------------------------------------------------ccccceecccccceeeecchh
Confidence 111 000000 000111111111111111100
Q ss_pred CCCccceee--c-cCCccccccEEEEEEcCCCceEEEec-----cCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224 741 SEPNQCRSL--R-LPENLRATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812 (1120)
Q Consensus 741 ~~~~~~~~~--~-~~~~~~~~~i~~l~~s~~g~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 812 (1120)
......... . .+.......-..+.|--||.++++.. ....++|||-+ |.
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~ 232 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA 232 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence 000000000 0 00000122334689999999887732 22678888753 11
Q ss_pred cccccCCCCCCCCCccEEEEccCCCEEEEEe----CCcEEEEEcCC---CceeeeecCCCCCeEEEEEecCCCcEEEE--
Q 001224 813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI-- 883 (1120)
Q Consensus 813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~las-- 883 (1120)
+-.. .......-.+++|-|.|..+++-. |+.|.+|.-+. +.....++....++..++|+. ++.+||+
T Consensus 233 Lns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~ 308 (1265)
T KOG1920|consen 233 LNST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT 308 (1265)
T ss_pred hhcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence 1000 001233345799999999999853 56799998653 222223333445599999999 8999998
Q ss_pred -EeCCCcEEEEEeecce--eeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEEC
Q 001224 884 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 884 -g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~ 937 (1120)
......|++|-+.+.. +...+....... +.|+|-. ..|..-..+|...+++.
T Consensus 309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 4455569999987632 334444333333 7888743 23333336666666654
No 321
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.5e-06 Score=89.05 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCc--------cHHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHH
Q 001224 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF--------NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI 76 (1120)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i 76 (1120)
+.-+-|+|..||..+||.++|..|-++|.+.- ++..++++|++|+...|+.....=...-..+-+. +-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~-lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESS-LEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccch-hhhHH
Confidence 34578999999999999999999999999862 3778899999999999987766541111112223 78999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccc
Q 001224 77 RKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1120)
Q Consensus 77 ~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1120)
+.|.|+||+..+++.+|+.+.++++.|....+.+.++....+|.+.....
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999998878899999999998865543
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=6.8e-07 Score=100.58 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=143.3
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC--CEE
Q 001224 856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLC 933 (1120)
Q Consensus 856 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~ 933 (1120)
+..+++..|....+|++|+- +.+.|++|+-.|.|++|++.+|.......+|.++|+.+.-+.||..+.+.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44456777888899999999 889999999999999999999999999999999999999999998877655433 467
Q ss_pred EEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccC--CCCCCeeEEEEC
Q 001224 934 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATFS 1010 (1120)
Q Consensus 934 iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s 1010 (1120)
+|++..-- .....+ ..-.++.|+.....-+.| ......+||+.++....++..+ +....=.+..||
T Consensus 1171 LW~~~s~~----~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTG----GPRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred Hhcccccc----Cccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 99987621 111112 234678888875554554 4567899999999887774422 112333678999
Q ss_pred CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1011 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1011 ~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
|+.++++ .|| .+||+...+.++++..-..-. .=.|+|+ |..++.-+ .|||+.+-.
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccCC-CceEEeec-----hhhhhHHHH
Confidence 9999887 456 479999888887765211111 2347884 67777665 578876654
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.1e-05 Score=91.12 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=133.0
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224 866 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 945 (1120)
Q Consensus 866 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~ 945 (1120)
..+.|++++ +++++.|+.+|.|++++... .. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457778875 47999999999999999763 33 444446554 56799999999999999999888554221
Q ss_pred eeeeccCCCCCCCCCCcEEEEccC-----CcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE
Q 001224 946 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus 946 ~~~~~~~~~~~~~~~i~~~~fspd-----g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
. .-+ .++.+++++|| .+++++|+...+.++.-.-..-..........++|.++.| .|.++|-++
T Consensus 109 ~-----df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 Y-----DFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred E-----ecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1 111 36899999998 5677776555477776432222222222344889999999 588888887
Q ss_pred cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1021 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1021 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
.+| |+|||+.+++.+..+++..-.+ ....++-.+.|.+ ...|+.|- .-+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence 555 9999999999999888554222 2234455788886 46788776 4468888887
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.29 E-value=0.00014 Score=86.24 Aligned_cols=275 Identities=9% Similarity=0.129 Sum_probs=155.8
Q ss_pred cccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224 757 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 836 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~ 836 (1120)
...|.++.|..++..++.+...|.|.+-|.+ +...... ..-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~e----------------------t~~~eiv----g~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPE----------------------TLELEIV----GNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccc----------------------ccceeee----eeccCceEEEeecCCC
Confidence 3689999999999999999999988876542 2221111 1256789999999999
Q ss_pred CEEEEEeCCcEEEEEcCCCceeeeecCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeEeecccccc
Q 001224 837 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKR 910 (1120)
Q Consensus 837 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~~h~~~ 910 (1120)
++++..+.+..-++...+..++....-+ .+....+-|-. ....+ -| ..|.....+....+ ......-| +.
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~~ 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-DH 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-cC
Confidence 9999998544444444444444332211 11112222221 00000 01 11111111111100 00111112 22
Q ss_pred eEEEEEccCCCEEEE-----EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE----EeCCeE
Q 001224 911 ITGLAFSHALNVLVS-----SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQL 981 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s-----~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~----~~d~~v 981 (1120)
=+.|.|--||+++|+ ....+.|+|||-+ |.... ... +..+.-.+++|-|.|.++++ ++|+.|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns------~se--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS------TSE--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc------ccC--cccccccceeecCCCCeEeeeeecCCCCcE
Confidence 356899999999987 3333789999987 32211 111 11123478999999999998 256779
Q ss_pred EEEEcCCceeeecccc--CCCCCCeeEEEECCCCcEEEE---EEcCCcEEEEEcCCcceee--eeCCCcccCCCCCCCCc
Q 001224 982 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRC--RINPSAYLPAGVSSSNV 1054 (1120)
Q Consensus 982 ~i~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s---~~~Dg~v~iwd~~~~~~~~--~~~~~~~~~~g~~~~~v 1054 (1120)
.+|.-+. -....+.. +....+|..++|+.++..|++ ......|++|-+.+..--. .+. ++.. .
T Consensus 269 vffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~-----~ 338 (1265)
T KOG1920|consen 269 VFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK-----A 338 (1265)
T ss_pred EEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc-----c
Confidence 9998643 22222221 122445999999999999997 4455569999988765432 222 2211 1
Q ss_pred cceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1055 HPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1055 ~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
-+.|+|..+..|..-..+|...+.++
T Consensus 339 ---~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 ---LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ---cccccCCCceeEEEEecCCcEEEEEE
Confidence 26677755555555556666555544
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.7e-05 Score=77.51 Aligned_cols=223 Identities=14% Similarity=0.191 Sum_probs=131.5
Q ss_pred cccCCCCceEEEEEcCCCC-eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v 499 (1120)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6888999999999999766 78889999999999999977655 45556 78999999999877 8999999999999
Q ss_pred EECCCCce-eEEeec--cccCeEEEeeccC----CCceEEEEEecCCeEEEEecCCCCCc--eeeeC-CCCceeEEEEcC
Q 001224 500 WDATNGAK-QYIFEG--HEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSR--VDYEA-PGRWCTTMAYSA 569 (1120)
Q Consensus 500 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~s~ 569 (1120)
||++..+- +..+.+ ...+|..++..+. +.|.+++....+ +.+|.+...... ..+.. ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986543 222222 2234444332111 112234433332 445654322111 11111 111222222222
Q ss_pred ----------------------------CCCeEE------ecccccc---eeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001224 570 ----------------------------DGTRTY------QGFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMDS 611 (1120)
Q Consensus 570 ----------------------------~g~~~~------~~~~~~~---i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 611 (1120)
||..+. .|..... -..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 111110 0110000 011222344555555 55678899999999
Q ss_pred CceeEEEecCCCCCCcCeEEEcC-CC-CEEEEEECCCcEEEEEcc
Q 001224 612 VQLLTSIDADGGLPASPRIRFNK-DG-CLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 612 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~i~iwd~~ 654 (1120)
++.++++.... .|.+++... ++ .+|++- .|..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 99999987652 465555443 33 355544 45678887643
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=4.8e-05 Score=86.69 Aligned_cols=207 Identities=14% Similarity=0.170 Sum_probs=133.0
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eEEEEEccCCCEEEEEeCCCC-----EEEEECCCccccc-
Q 001224 872 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 944 (1120)
Q Consensus 872 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----v~iWd~~~~~~~~- 944 (1120)
+|++ ++..+|.|+.+|.|.+++ ++-+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3456 677899999999998887 345566888888777 555555555578999888865 8999998764433
Q ss_pred ceee---eccCCCC-CCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee--eeccccCCCCCCeeEEEECCCCcEEE
Q 001224 945 NRFL---QIPTGRT-PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVY 1017 (1120)
Q Consensus 945 ~~~~---~~~~~~~-~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~ 1017 (1120)
..++ ....... ..+.++..++.|.+-+.+|+| .+|.|..+.-+-.+. .+.-.......+|+.+++..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 3343 2222111 123578899999999999998 788888875332111 11111122378999999999999844
Q ss_pred EEEcCCcEEEEEcCCcceeee-eCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 001224 1018 ACFLDATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1092 (1120)
Q Consensus 1018 s~~~Dg~v~iwd~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1092 (1120)
-+..-..|.+|.+....+... +. +++..+. +.+|++..++ ++.++ +..|.+++......-|..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcceeeee
Confidence 444567899999984442222 22 2233344 6777763332 44433 567888887765544443
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.26 E-value=6.2e-05 Score=85.37 Aligned_cols=224 Identities=11% Similarity=0.030 Sum_probs=136.5
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCCceeeeecC------C---------CCCeEE-----EEEecCCCcEEE-EEeCCCcE
Q 001224 834 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAATF-----LAFHPQDNNIIA-IGMDDSSI 890 (1120)
Q Consensus 834 ~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~i~~-----l~~sp~d~~~la-sg~~dg~v 890 (1120)
.||+|+..-. +..|...+++..++-+.+.- | ...|.+ +=++| ||+.+. +.-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 4889999887 46676667665554333211 1 111211 22444 554442 22234567
Q ss_pred EEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCC--EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 891 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 891 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~--v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
.+.|..+.+...++.--. ....+++++||+++.+.+.+.. ..+-.+...+......+... ..-++.+
T Consensus 218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence 777777766665554322 3356789999999988763221 11222222111100000000 0113355
Q ss_pred CCcEEEEEeCCeEEEEEcCC-----ceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcce-------
Q 001224 969 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 1035 (1120)
Q Consensus 969 dg~~la~~~d~~v~i~d~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~------- 1035 (1120)
+|++..+ .++.|.+.|..+ ...+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 7877666 467899999998 344444432 56788999999999987665 478999999988663
Q ss_pred -----eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1036 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1036 -----~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
...++ -| .-|+..+|.+ +|+...|-..|..|..|++..
T Consensus 363 ~~~~vvaeve------vG-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPE------LG-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeec------cC-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33322 12 4577899998 588999999999999999986
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0001 Score=76.71 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=148.7
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCC-EEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 879 (1120)
.++..+..+=.... .+.. +...|..++|||..+ .+..++ +.+|+|.|+.+..++..+..+ ..+.+++|.-++..
T Consensus 174 Gv~~l~~~~fkssq-~lp~--~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 174 GVQKLESHDFKSSQ-ILPG--EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred ceEEeccCCcchhh-cccc--cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcc
Confidence 34455444433332 2333 788899999999888 677777 899999999999888888877 77999999998888
Q ss_pred EEEEEeCCCcEEEEEeecce-eeEeecc--cccceEEEE------EccCCCEEEEEeCCCCEEEEECCCcccccceeeec
Q 001224 880 IIAIGMDDSSIQIYNVRVDE-VKSKLKG--HSKRITGLA------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 950 (1120)
Q Consensus 880 ~lasg~~dg~v~vwd~~~~~-~~~~l~~--h~~~V~~l~------~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 950 (1120)
+|..|..+|.|.|||++.-+ .+..+.+ -..+|..++ ..+.|.+|+....+ +..|++..........+..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 99999999999999998633 2222222 123333333 23345566655543 5667765432211111111
Q ss_pred cCCCCCCCCCCcEEEEccCCcEEEEE--eCC------eEEE-EEcCCceeeeccccCCC-CCCe------eEEEECCCCc
Q 001224 951 PTGRTPTAQSDTRVQFHQDQIHFLVV--HET------QLAI-FETTKLECVKQWVPRES-SAPI------THATFSCDSQ 1014 (1120)
Q Consensus 951 ~~~~~~~~~~i~~~~fspdg~~la~~--~d~------~v~i-~d~~~~~~~~~~~~~~h-~~~v------~~l~~s~dg~ 1014 (1120)
. .++...++.+.+-.+.++.+ .+. .+-. -|-..|..+..... +| .+.- ..+.=.+|..
T Consensus 328 e-----~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 328 E-----PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred C-----CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceecccccc
Confidence 1 01234455555544555543 111 1111 11112222111110 11 1110 1122245666
Q ss_pred EEEE-EEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1015 LVYA-CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1015 ~l~s-~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
+++. +.....+.+||..+++.+.++... .++. .+.....++.-++..-+|..++|+..+.
T Consensus 402 ~iv~~gd~tn~lil~D~~s~evvQ~l~~~---------epv~--Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEVVQTLALS---------EPVL--DICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred EEEEecCCcceeEEeccchhheeeecccC---------ccee--ecceeecCCcchhhheecceEEEEecCC
Confidence 6554 444578999999999999987722 2243 4554433444445555688889887653
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.21 E-value=2e-05 Score=89.89 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=132.7
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 913 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 913 (1120)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-|.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666776 788999999988887777655556666655 6789999999999999999999999999999999986
Q ss_pred EEEccCCCEEEEEeC---------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC--CcEEEEEeCCeEE
Q 001224 914 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 982 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd--g~~la~~~d~~v~ 982 (1120)
+.. .|+.|+++|. |.-|+|||++.-+.. .+++... ...-+.|.|. .+..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~-------~P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPY-------GPQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCccccc-------CchhhhhcccccceEEEEeccccee
Confidence 665 6889999886 456899999873321 1222221 2255677775 3444446888888
Q ss_pred EEEcCCc-ee-eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 983 IFETTKL-EC-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 983 i~d~~~~-~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
+-|..+. .. ...+........+..+++|++|+.++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8884322 11 12222223355699999999999999999999999997
No 330
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.20 E-value=0.031 Score=65.79 Aligned_cols=470 Identities=10% Similarity=0.084 Sum_probs=239.0
Q ss_pred cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeeccCCCce----EEEEEecCCeEEEEec
Q 001224 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY 546 (1120)
Q Consensus 472 ~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~ 546 (1120)
+.++..+.+.+.. .++.++.++.+...++..+...... ......|.|+.++|.++++ +++.|..+..+.+
T Consensus 488 ~~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~--- 562 (1096)
T KOG1897|consen 488 GKITIGVVSANAS--QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMI--- 562 (1096)
T ss_pred CceEEEEEeecce--EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEE---
Confidence 3444444445555 3666666778888887766622111 2234678888887665443 4555554433332
Q ss_pred CCCCCceeeeCCCCceeEEEEcCCCCeEEecc-----cccceeEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEEe
Q 001224 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSID 619 (1120)
Q Consensus 547 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~ 619 (1120)
+.+.||........ -.+.+-...+-.+..+|+++..||.+.-+.++ ++..-..-+
T Consensus 563 ------------------l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 563 ------------------LTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred ------------------EEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 23333332111110 01123333444456789999999998777554 444332222
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001224 620 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 699 (1120)
Q Consensus 620 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1120)
.+-++.++.=-.|+..++.-+.+..|.-..+|..+.. -.+..+.-..- . .+++..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev-------~---~~c~f~-------------- 679 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEV-------N---HMCPFN-------------- 679 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHh-------h---hhcccc--------------
Confidence 2333445555566665555555555666666654322 11111100000 0 011110
Q ss_pred ccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCc
Q 001224 700 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 779 (1120)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 779 (1120)
++...-.+.....+.+++..++..+...... .|. ....+.+++.+....+.+.+...
T Consensus 680 -----------------s~a~~d~l~~~~~~~l~i~tid~iqkl~irt---vpl---~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 680 -----------------SDAYPDSLASANGGALTIGTIDEIQKLHIRT---VPL---GESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred -----------------cccCCceEEEecCCceEEEEecchhhcceee---ecC---CCChhheEecccceEEEEEeccc
Confidence 1111122222333566676666544322211 221 23344556665433333333221
Q ss_pred eEEEeeecccccCCCCccccccCceeecCCCCCccccc-CCCCCCCCCccEEEEccC-CCEEEEEe-----------CCc
Q 001224 780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK 846 (1120)
Q Consensus 780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~-~~~~~~~~~v~~l~~s~d-~~~l~~~s-----------dg~ 846 (1120)
....= . .+...-...++++|..+-+.+... +........+.++.|..| +.++++|. .|.
T Consensus 737 e~~~~------~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 737 ESSAE------Y--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ccchh------h--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 11000 0 011111113456666665543321 111111222334447777 77888773 277
Q ss_pred EEEEEcCCCceeeeecCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224 847 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 924 (1120)
Q Consensus 847 i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 924 (1120)
|.+|.+..++.+.....+ .+.+.++..- +|++||. -+..|++|+..+.+.++.-..|..++..+...-.|..++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 899988774444443222 3445555443 5777764 467899999999877777778889999999999999999
Q ss_pred EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce----------eeec
Q 001224 925 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVKQ 994 (1120)
Q Consensus 925 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~----------~~~~ 994 (1120)
.|+--+.+.+-..+..+.......+-. +. ...+++.+-.+..++.+-.+|.+.+...++.. ....
T Consensus 885 VgDlm~Sitll~y~~~eg~f~evArD~--~p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~ 959 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEGNFEEVARDY--NP---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK 959 (1096)
T ss_pred EeeccceEEEEEEeccCCceEEeehhh--Cc---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence 999888877665544332111111111 11 35677888888888877667766665543210 1111
Q ss_pred cccC------CCCCCeeE--EEECCCCcEEEEEEcCCcEEEEE
Q 001224 995 WVPR------ESSAPITH--ATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 995 ~~~~------~h~~~v~~--l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
|..+ .|..-|.. -..+|-+.-+..|..+|.|-+--
T Consensus 960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEE
Confidence 1110 12333333 13345455577788898887653
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=5.1e-06 Score=58.40 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=36.5
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 855 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 855 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
++++.++.+|...|++|+|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 367889999999999999999 899999999999999997
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00043 Score=77.63 Aligned_cols=282 Identities=13% Similarity=0.108 Sum_probs=160.0
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
+...+.--+++..+++++.|++.|.+++|+-. .|....... .+....+....++++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~----------------------~~~~~~~~~--~~~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH----------------------TGEMRKLKN--EGATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC----------------------chhhhcccc--cCccceEEEEEecch
Confidence 45667777888899999999999999998742 222222111 113455666788899
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcee-----eee-cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc----eeeEee
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTM-----ATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKL 904 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~-----~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~----~~~~~l 904 (1120)
..++|.|+ .|.|.++-+...... ... ..|...|+|++|++ +++.+.+|...|.|..-.+.+. ...+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 98999888 688888887653221 111 23677899999999 9999999999999999888772 112233
Q ss_pred cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----CcEEEEEeCCe
Q 001224 905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQ 980 (1120)
Q Consensus 905 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd----g~~la~~~d~~ 980 (1120)
-.-.+.|..+... ++.+|++...- -.+.+++.++..+ .-+..... -.-...+|-|. ..-.+.+..-.
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~Q--IG~k~R~~----~~~~GACF~~g~~~~q~~~IycaRPG 237 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETITQ--IGKKPRKS----LIDFGACFFPGQCKAQKPQIYCARPG 237 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhh--hheeecchhHHHH--hcCCCcCC----ccccceEEeeccccCCCceEEEecCC
Confidence 3345667767665 34455544332 2344444422110 00001000 01234455554 33344455556
Q ss_pred EEEEEcCC-ceeeeccccC-----------CCCC----------------CeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 981 LAIFETTK-LECVKQWVPR-----------ESSA----------------PITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 981 v~i~d~~~-~~~~~~~~~~-----------~h~~----------------~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
.++|.++- |+.+++...+ .+.+ ....+.+-.++ ++++-++-| |+|+|..+
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~ 315 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNN 315 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEecc
Confidence 77777653 3333332110 0000 11111112222 344444444 88999888
Q ss_pred cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1033 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1033 ~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.+.+.-.+ + ...+. .++- +++-|+.-..||.+++..+.+.+
T Consensus 316 ~~v~l~se-------~--~~DI~--dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 316 SQVYLWSE-------G--GHDIL--DVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred ceEEEeec-------C--CCcee--EEee---cCceEEEEecCCceeEEEeehhH
Confidence 77775433 1 11122 3333 35666666778888888877665
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0037 Score=73.05 Aligned_cols=210 Identities=12% Similarity=0.086 Sum_probs=113.6
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecc---cccCe--EEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGV--NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~---h~~~V--~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
+..+..++.++.|.-.|..+|+.+-....-.. +...+ ..++.. ++. .++.++.++.|.-+|.++|+.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 45666777789999999999886643211100 00011 011221 213 47778889999999999999998775
Q ss_pred ccccC-----eE-EEeeccCCCceEEEEEe---------cCCeEEEEecCCCCCceeeeCCCCceeEEE-EcCCCCeEEe
Q 001224 513 GHEAP-----VY-SVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQ 576 (1120)
Q Consensus 513 ~h~~~-----v~-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~g~~~~~ 576 (1120)
..... +. +..+. + ..++.++ .++.+..+|..+++....+.........+. +.+.. ...
T Consensus 138 ~~~~~~~~~~i~ssP~v~---~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~- 211 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV---K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW- 211 (488)
T ss_pred CCCCcCcceEecCCCEEE---C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence 43221 11 11111 1 2444443 367888999998888876654321110000 00000 000
Q ss_pred cccccce-eEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCceeEEEecCCCCC----CcCeEEEc
Q 001224 577 GFRKRSL-GVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN 633 (1120)
Q Consensus 577 ~~~~~~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s 633 (1120)
+.....+ ....+++.+..++.++.++ .|.-+|..+|+.+..++...+.. ......+.
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence 1111111 1244555556677776554 78889999999888775322110 00111111
Q ss_pred ----CCCC---EEEEEECCCcEEEEEccCc
Q 001224 634 ----KDGC---LLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 634 ----~~~~---~l~~~~~dg~i~iwd~~~~ 656 (1120)
-+|. .+++++.+|.+..+|..+|
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCC
Confidence 1333 5667777888888887777
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00016 Score=82.09 Aligned_cols=185 Identities=14% Similarity=0.195 Sum_probs=129.2
Q ss_pred CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224 824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 902 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 902 (1120)
...++|+++ .+++++-|+ +|.|++++.... . .+...|... .. +|.++++|+.||.|.|..+.+.+...
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 455666666 457899998 899999997643 2 333334333 44 79999999999999999999888776
Q ss_pred eecccccceEEEEEccC-----CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe
Q 001224 903 KLKGHSKRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 977 (1120)
Q Consensus 903 ~l~~h~~~V~~l~~s~d-----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~ 977 (1120)
++. ...++.+++++|| .+.+++||.-| +.++.-.=-.......+.. ..++|.++.| .|.++|-+.
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------GEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------CccceEEEEe--cCcEEEEec
Confidence 665 3467999999998 57899999888 7776532111111111222 2257888888 477888899
Q ss_pred CCeEEEEEcCCceeeeccccCCC----CCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 978 ETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
|-.|++||+.+.+.+..+..+.. ..-...+.|.++.++++ | ...+|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 99999999999988877654321 12244678877766544 4 34578888877
No 335
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.04 E-value=5.7e-06 Score=64.28 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=43.5
Q ss_pred cHHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCH
Q 001224 37 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90 (1120)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1120)
++..++++|+.|+|+.|++.+...........+. +.|.|++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence 3678999999999999999999984433333334 9999999999999998764
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=0.00071 Score=75.24 Aligned_cols=282 Identities=11% Similarity=0.149 Sum_probs=141.3
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCC-CCccc-----------cccCceeecCC--------CCCcccccC
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS-SGKAT-----------ASVAPQLWQPP--------SGIMMTNDV 818 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~-----------~~~~~~~w~~~--------~g~~~~~~~ 818 (1120)
.|..+.|+++..-++++...|.+.+|.+...+... ..... ....-.+-|.. .|......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57889999998889999999999999987654332 00000 00011122211 122111222
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee--ecC------CCCCeEEEEEec----CCC---cEEE
Q 001224 819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FMP------PPPAATFLAFHP----QDN---NIIA 882 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~--~~~------~~~~i~~l~~sp----~d~---~~la 882 (1120)
.. ..++|++++.| |--++|+|. +|.+.|.|++....+.. +.. ....|+++.|+. +|+ -.|.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47899999997 555999999 89999999987666544 111 234688888872 122 4788
Q ss_pred EEeCCCcEEEEEeec---ceeeEee----cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccccee--eeccCC
Q 001224 883 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTG 953 (1120)
Q Consensus 883 sg~~dg~v~vwd~~~---~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~~ 953 (1120)
+|+..|.+.+|.+.- +.....+ ..+.++|..+. ..+.++++...... ++....
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcccc
Confidence 899999999998752 2111111 12223332222 22333322211100 000000
Q ss_pred CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEEC-----CCCcEEEEEEcCCcEEEE
Q 001224 954 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCVF 1028 (1120)
Q Consensus 954 ~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~~~Dg~v~iw 1028 (1120)
. .+...+++++.+..++++...+.+...... ...-....+++- ..+..|++-..+|.|++|
T Consensus 222 g------------~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 222 G------------ISIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp T----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred C------------CCcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 0 011235666789999999999887765544 112233344552 356678888999999999
Q ss_pred EcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1029 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1029 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
.+...+.+..+....... ..... ...+++ +|+.++-.+ ...+.++.+
T Consensus 288 SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 288 SLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp ETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEE
T ss_pred ECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEEE
Confidence 999999998877321111 11122 455666 577766665 334444443
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.00 E-value=0.0024 Score=67.37 Aligned_cols=258 Identities=14% Similarity=0.153 Sum_probs=147.6
Q ss_pred eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-----------CCcEEEEEcCCCceeeeecCCCC------
Q 001224 804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP------ 866 (1120)
Q Consensus 804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~------ 866 (1120)
.+.|..+++++... ..+-.-.+.++||++.+.+++ ...|.+||..+......+.-...
T Consensus 20 ~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 20 YVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred EEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 34455555544332 223344578899999998753 12399999999877765432221
Q ss_pred -CeEEEEEecCCCcEEEEEe--CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccc
Q 001224 867 -AATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 943 (1120)
Q Consensus 867 -~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~ 943 (1120)
....++++. |++++.+.. --.+|.|-|+..++.+.++.-.. ...+--+. .+.+.+.|.||.+.-..++...+.
T Consensus 95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCE
Confidence 223457777 677666543 33467788888887777665322 12222222 245778889999999998843333
Q ss_pred cceeeeccCCCCCCCCCCcEEEEccC-CcEEEEEeCCeEEEEEcCCceee--------------eccccCCCCCCeeEEE
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECV--------------KQWVPRESSAPITHAT 1008 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~~~d~~v~i~d~~~~~~~--------------~~~~~~~h~~~v~~l~ 1008 (1120)
.......+..... .....-+++.. +.++.++.+|.|+-.|+...... ..|. .+...-++
T Consensus 171 ~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr----PGG~Q~~A 244 (342)
T PF06433_consen 171 AQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR----PGGWQLIA 244 (342)
T ss_dssp EEEEEEESSTTTS---B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE----E-SSS-EE
T ss_pred eEeeccccCCCCc--ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC----Ccceeeee
Confidence 3222233322211 12233444443 45666778888887777654321 1233 22344567
Q ss_pred ECCCCcEEEEEEc--------C--CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEE-eCCCc
Q 001224 1009 FSCDSQLVYACFL--------D--ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGG 1077 (1120)
Q Consensus 1009 ~s~dg~~l~s~~~--------D--g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~-~~Dg~ 1077 (1120)
+.+....|++--. | ..|.++|+.+++.+.++. +... +. +++.+.++..+|++. ..++.
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTE
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCe
Confidence 7766555544321 1 248888999999999987 2211 33 677777666677665 45899
Q ss_pred EEEEecCCCC
Q 001224 1078 VHVFEPLESE 1087 (1120)
Q Consensus 1078 v~vW~~~~~~ 1087 (1120)
|.|||..+|+
T Consensus 314 l~v~D~~tGk 323 (342)
T PF06433_consen 314 LDVYDAATGK 323 (342)
T ss_dssp EEEEETTT--
T ss_pred EEEEeCcCCc
Confidence 9999999987
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00034 Score=80.03 Aligned_cols=199 Identities=13% Similarity=0.180 Sum_probs=135.7
Q ss_pred EEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCC-eEEEEEecCCCcEEEEEeCCC-----cEEEEEeecc----
Q 001224 830 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD---- 898 (1120)
Q Consensus 830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~---- 898 (1120)
-++++.+..++.|+ +|.|.+.+- +.+.++.+..+... |+.+-... +..+|++-+.|+ .|+||+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45678888999999 899988884 34555777777777 44454443 446777776665 4899999752
Q ss_pred --eee--Eeecc-----cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224 899 --EVK--SKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 899 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd 969 (1120)
.++ ..+.. ...++.+++.|.+-+.+|.|-.||.|..+.=+--..+..+..-...+. .+|+.++|-.+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 233 12222 245788999999999999999999999885443222222222222232 58999999999
Q ss_pred CcE-EEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 970 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 970 g~~-la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
++. +.++....|.+|.+.... ...-..+.|...+.|-+|++-..-+++++ +..+.+|+.+....-
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 987 445678899999998444 33333457788899999887655455554 567999998754443
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.99 E-value=0.00077 Score=75.34 Aligned_cols=291 Identities=13% Similarity=0.109 Sum_probs=147.6
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 679 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1120)
..+.+.+||+.+++....... ...+....|||+|+.++... ++.|.+++..++....-+..+ ...
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~---------- 85 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPG---------- 85 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTT----------
T ss_pred cceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-cee----------
Confidence 356799999999765544332 23578899999999999886 478888877665221111111 000
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224 680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 759 (1120)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1120)
+..|-.| |-..+ .--..
T Consensus 86 -------------------------------------------i~nG~~d-----wvyeE---------------Ev~~~ 102 (353)
T PF00930_consen 86 -------------------------------------------IYNGVPD-----WVYEE---------------EVFDR 102 (353)
T ss_dssp -------------------------------------------EEESB-------HHHHH---------------HTSSS
T ss_pred -------------------------------------------EEcCccc-----eeccc---------------ccccc
Confidence 0000000 00000 00011
Q ss_pred EEEEEEcCCCceEEEeccC-ceEEEeeeccc-------------ccCCCCccccccCceeecCCCCCcccccCC--CCCC
Q 001224 760 ISRLIFTNSGNAILALASN-AIHLLWKWQRT-------------ERNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNP 823 (1120)
Q Consensus 760 i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~-------------~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~--~~~~ 823 (1120)
-.++.|||||+.|+...-| ..+..+.+... .....|.......+.+++..+++....... ....
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~ 182 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ 182 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence 1245667777666655543 33333322111 011122222334556777777765432222 0124
Q ss_pred CCCccEEEEccCCCEEEEE-eC-----CcEEEEEcCCCceeeeecC-CC---CCeEEEEEe-cCCCcEEEEEeCCCcEEE
Q 001224 824 EEAVPCFALSKNDSYVMSA-SG-----GKISLFNMMTFKTMATFMP-PP---PAATFLAFH-PQDNNIIAIGMDDSSIQI 892 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~-sd-----g~i~vwd~~~~~~~~~~~~-~~---~~i~~l~~s-p~d~~~lasg~~dg~v~v 892 (1120)
..-+..+.|+++++.++.. .+ ..+.+.|..++.+...... .. ..-....|. +++..+|.....||.-+|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 5668889999999944443 22 2377778877655333221 11 122355554 656777777778887666
Q ss_pred EEeec-ceeeEeecccccceEE-EEEccCCCEEE-EEeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCC-cEEEE
Q 001224 893 YNVRV-DEVKSKLKGHSKRITG-LAFSHALNVLV-SSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQF 966 (1120)
Q Consensus 893 wd~~~-~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~f 966 (1120)
|-+.. +.....+....-.|+. +.++++++.|. ++..+ +.-.+|.+.........++.... .. ..+.|
T Consensus 263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-------~~~~~~~~ 335 (353)
T PF00930_consen 263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-------GDHYSASF 335 (353)
T ss_dssp EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-------STTEEEEE
T ss_pred EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-------CCceEEEE
Confidence 65543 2334566666667755 67888877665 55442 24445544432111122332222 22 48999
Q ss_pred ccCCcEEEE
Q 001224 967 HQDQIHFLV 975 (1120)
Q Consensus 967 spdg~~la~ 975 (1120)
||+|++++.
T Consensus 336 Spdg~y~v~ 344 (353)
T PF00930_consen 336 SPDGKYYVD 344 (353)
T ss_dssp -TTSSEEEE
T ss_pred CCCCCEEEE
Confidence 999999887
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.99 E-value=0.00015 Score=83.03 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=129.8
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 516 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 516 (1120)
++..++-|+-...+..+|+.+.+..+ ...-..+.|.-|.. +++ ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45567778888889999999877554 22223334665553 456 799999999999999999999999999999
Q ss_pred CeEEEeeccCCCceEEEEEec---------CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
.|..+.. .|+.|+++|. |.-|++||++..+.+..+..+.++ .-+.|.|.-.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------------- 278 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------------- 278 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc---------------
Confidence 9987764 3468888875 456899999987665444333221 1222333221
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-ce-eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSV-QL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
..+++++..|...+-|..+- .+ ......+.....+..+.+|++|..++.|..+|.|.+|.-
T Consensus 279 -----t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 279 -----TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -----ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 45888888999999883321 11 222222222335889999999999999999999999973
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.96 E-value=0.0065 Score=67.93 Aligned_cols=104 Identities=16% Similarity=0.276 Sum_probs=63.4
Q ss_pred ecCCCeEEEEE--------eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 373 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 373 spdg~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68898766522 123678899999876553 22225679999999999999998
Q ss_pred ECCCeEEEEEccCCceeeeeeeecc-------c---------ccCeEEEEEcCCCCceEEEEe-cCCCcEEEEE
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD 501 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~d~~~~~l~s~-s~d~~i~vwd 501 (1120)
. ++.|.+++..++...+. +..| - -+.-..+-|||||++ |+.. -++..|+.+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence 6 57799999888754432 2222 0 112356889999996 4433 3344444443
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.0026 Score=74.31 Aligned_cols=244 Identities=10% Similarity=0.059 Sum_probs=138.4
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeeecCCCCC-----eE-EEEEecCCCcEEEEEe---------CCCcEEEEEeeccee
Q 001224 837 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----AT-FLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV 900 (1120)
Q Consensus 837 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-----i~-~l~~sp~d~~~lasg~---------~dg~v~vwd~~~~~~ 900 (1120)
..++.++ ++.|.-+|.++++.+-.+...... +. +..+. ++ +++.++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4566665 899999999999988776543321 11 22232 33 444454 367899999999988
Q ss_pred eEeeccccc--------------------ceE-EEEEccCCCEEEEEeCCC------------------CEEEEECCCcc
Q 001224 901 KSKLKGHSK--------------------RIT-GLAFSHALNVLVSSGADS------------------QLCVWSSDGWE 941 (1120)
Q Consensus 901 ~~~l~~h~~--------------------~V~-~l~~s~d~~~l~s~s~Dg------------------~v~iWd~~~~~ 941 (1120)
+-.+..... .|. +.++.+.+..++.++.++ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 776643211 111 234444566777776665 68888999887
Q ss_pred cccceeeeccCCCC-CCCCCCcEEEE-ccCCc---EEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE
Q 001224 942 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus 942 ~~~~~~~~~~~~~~-~~~~~i~~~~f-spdg~---~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1015 (1120)
..-........... .......-... .-+|. .+++ +.+|.+..+|..+|+.+-..... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence 65432221111000 00000000000 12343 3444 47899999999999987654321 11233444 33
Q ss_pred EEEE------------------EcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224 1016 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus 1016 l~s~------------------~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
++.+ ..+|.|.-.|+.+|+.+-+............+.....-.++. .+..|++++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence 3322 236789999999999887766321100000000010001222 2578999999999
Q ss_pred EEEEecCCCCCCCCCC
Q 001224 1078 VHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1078 v~vW~~~~~~~~~~~~ 1093 (1120)
|+.+|..+|+..|...
T Consensus 418 l~ald~~tG~~lW~~~ 433 (488)
T cd00216 418 FRAFDATTGKELWKFR 433 (488)
T ss_pred EEEEECCCCceeeEEE
Confidence 9999999999888864
No 343
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.93 E-value=1.5e-05 Score=49.47 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 001224 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1120)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1120)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0026 Score=70.77 Aligned_cols=268 Identities=14% Similarity=0.203 Sum_probs=138.7
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeE------ee------------ceeeeccCCCCc------cccccc
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSM------PLQAAL 421 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~~------~~~~~~ 421 (1120)
.|++|.|+++... |++|...|.|.||.+..++.-. .. +-.+.|+..... -.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999775 8999999999999987654332 00 111223221111 112334
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecc------cccCeEEEEEc---C--CC-CceEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS---H--PN-KQLCVI 489 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s---~--d~-~~~~l~ 489 (1120)
+....++|++++.| |=.++|.|+.+|.+.|.|+++...+.. ..+.. ....|+++.|+ . |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 666999999999999999987765532 22333 23468888886 2 22 114788
Q ss_pred EecCCCcEEEEECC-C--CceeE----EeeccccCeEEEeeccCCC-------------------ceEEEEEecCCeEEE
Q 001224 490 TCGDDKTIKVWDAT-N--GAKQY----IFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA 543 (1120)
Q Consensus 490 s~s~d~~i~vwd~~-~--~~~~~----~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i 543 (1120)
.|...|.+.+|.+. . +.... ....+.++|..++.-...+ -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999875 2 22211 1124566766665321111 012333344678888
Q ss_pred EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623 (1120)
Q Consensus 544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 623 (1120)
+...+.+..............+.+-+- .. ...+..|++-..+|.|+++.+-.-+.+..+.....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~---------------~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPT---------------IS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEE---------------E--EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEee---------------cc-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 877655443322211111111222100 00 11234578888999999999999888888775321
Q ss_pred --CCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 624 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 624 --~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
...+...+++++|..++-.+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 123567888999987665543 35555544
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.0013 Score=73.90 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=92.6
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+...|.--+++..+++ ++.|+.-|.+++|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4455555667778885 99999999999999888776542 1233556788888999999999
Q ss_pred EEECCCeEEEEEccCCceeeeee--ee-cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHL--EI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~--~l-~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
.|+..|.|.++-+..+..-.... .. ..|...|++++|++|+. .+.+|...|.|..-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 99999999999887643222111 11 13778999999999999 599999999999888776
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.88 E-value=0.00074 Score=74.92 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCCccEEEEcc-CCCEEEEE----e-CCc----EEEEEcCCCceeee---ecCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001224 824 EEAVPCFALSK-NDSYVMSA----S-GGK----ISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 890 (1120)
Q Consensus 824 ~~~v~~l~~s~-d~~~l~~~----s-dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 890 (1120)
+....++.||- +...+.+. + +|. ..+|+....+..+. --.....+.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34456777775 33344432 2 333 46677665433211 123567899999999 88899999999999
Q ss_pred EEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCc
Q 001224 891 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 940 (1120)
Q Consensus 891 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~ 940 (1120)
.+||...+.. .+..+.-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876632 23334456788999999999999999999999998764
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.88 E-value=0.041 Score=64.55 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224 845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 907 (1120)
Q Consensus 845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 907 (1120)
|.|.-+|+.+++..-..+.......+... - .+.+++.++.||.++.+|..+|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA-T-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceE-E-CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 45778888888777655432222222212 2 3447777888999999999999998877654
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.0043 Score=63.93 Aligned_cols=217 Identities=10% Similarity=0.085 Sum_probs=117.5
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc-ccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
.+.+-...+..++|.|+++.++++....+.|..++. +|+.++.+.-. .+..-+|++..++.++++--.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455556679999999966778888888899988886 47777765432 3457789998888888877678999999985
Q ss_pred Cccccc-ceeeeccC-C-CCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---ceeee-----ccc-cCCCCCCee
Q 001224 939 GWEKQK-NRFLQIPT-G-RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVK-----QWV-PRESSAPIT 1005 (1120)
Q Consensus 939 ~~~~~~-~~~~~~~~-~-~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~---~~~~~-----~~~-~~~h~~~v~ 1005 (1120)
...... ....+... + .......+..++|++.+..|.++ ...-..+|.+.. ...+. .+. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 432211 11111111 1 11122468999999987766665 444556666543 11111 011 112355689
Q ss_pred EEEECCC-CcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224 1006 HATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1006 ~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
++++.|. |.+++.......|.++| .+|+.+..+......+ |-....-.+-.|+|.+ +| .|...++-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence 9999886 45666666778899999 7788777666322211 1011113466899998 56 55555566655554
No 349
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.81 E-value=3e-05 Score=52.40 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001224 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1120)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1120)
-++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.77 E-value=0.0018 Score=73.10 Aligned_cols=222 Identities=10% Similarity=0.107 Sum_probs=117.2
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
.....+.++|+|+.+++ +.+|...+|..... +- ...+.....+|.+.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSSE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCcc
Confidence 44678999999997777 66667777652100 00 0234456788888666
Q ss_pred EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224 838 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 838 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 917 (1120)
+.+.-..++|.++.--+......+... ..+..+- .|.+|...+.+ .|.+||..+++.+..+... +|..|.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 544444788999743233332333321 1233332 26677776544 8999999999999998844 38999999
Q ss_pred cCCCEEEEEeCCCCEEEEECCCc---------ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224 918 HALNVLVSSGADSQLCVWSSDGW---------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988 (1120)
Q Consensus 918 ~d~~~l~s~s~Dg~v~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~ 988 (1120)
++|.+++-.+.+ .+.|++.+.. -......+.... ..|.+.+|..| .++.+... .++. +-.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiYtT~~-~lkY--l~~ 222 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIYTTSN-HLKY--LVN 222 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TT-EEEE--EET
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEEEcCC-eEEE--EEc
Confidence 999999988865 5888776543 000111121111 36888999887 44444433 6666 333
Q ss_pred cee--eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 989 LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 989 ~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
|+. +..+ ..++.=+.+.+....++....|+.|..+.++...
T Consensus 223 Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 223 GETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp TEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred CCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 332 2222 4567777888877788888888888888776443
No 351
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.77 E-value=0.014 Score=63.03 Aligned_cols=286 Identities=14% Similarity=0.082 Sum_probs=135.4
Q ss_pred EEcCCCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001224 764 IFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 842 (1120)
Q Consensus 764 ~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~ 842 (1120)
+|.++|+.|+.++. +|.-.+|-+ |..+++..+. ..... .......++++.+.++..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg~g-~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDGPG-DNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----SS--B-TTT-EE-TTSSEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccCCC-CCccceEEecCCCeEEEE
Confidence 67888977766555 555555543 4455554442 11111 222346677888887765
Q ss_pred e-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec-CCCcEEEEEeC----------------------CCcEEEEEeecc
Q 001224 843 S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGMD----------------------DSSIQIYNVRVD 898 (1120)
Q Consensus 843 s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~lasg~~----------------------dg~v~vwd~~~~ 898 (1120)
. +..|+-.|+.+.+....+.....-+-...|.. .|+..++-.-. ...|.--|+.+|
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 5 57899999999877666655555554455542 25555442211 123444566666
Q ss_pred eeeEeecccccceEEEEEccCCCEEEEEeC----CCC-EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 973 (1120)
Q Consensus 899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----Dg~-v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l 973 (1120)
+....+. -..-+..+.|||....++.=+. |.. -|||-+++.......+.+... ...+..=-|.|||..|
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTI 252 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-E
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEE
Confidence 6443333 3344677899987655554333 332 378876653322222211111 1345667899999988
Q ss_pred EE-E-----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC----------------cEEEEEcC
Q 001224 974 LV-V-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSAA 1031 (1120)
Q Consensus 974 a~-~-----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----------------~v~iwd~~ 1031 (1120)
.. + .+..|.-+|..+++...... ..+...+.-++||++++-=+.|. .|+++++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 76 3 23357778888876543322 22455677789999887544432 46678887
Q ss_pred CcceeeeeCC-Cccc-CCCCCCCCccceEEEecCCCCCE-EEEEeCCCcEEEEecCC
Q 001224 1032 NLKLRCRINP-SAYL-PAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1032 ~~~~~~~~~~-~~~~-~~g~~~~~v~~~~i~~~p~d~~~-l~s~~~Dg~v~vW~~~~ 1085 (1120)
.+........ ..+. -.|+ .. +.--...|+|+ +++ |.+....|...|+-+.-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPD-gk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPD-GKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTEEEEEEE-------BTTB-SS-TT----EE-TT-SSEEEEEE-TTSS-EEEEEE-
T ss_pred cCceeeeeeccCcceeecCC-Cc-cCCCCCccCCC-CCEEEEECCCCCCccEEEEeC
Confidence 7765432221 0111 1111 11 11124889995 555 56667778777776543
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.017 Score=59.54 Aligned_cols=162 Identities=8% Similarity=0.110 Sum_probs=96.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
-...+..++|+|+...|+++....+.|...+.+ |+.+.+.+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 345699999999988899999999999999974 77766433 233 34678889988888887
Q ss_pred EEECCCeEEEEEccCCce---eee--eeeec---ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC---CceeEEe
Q 001224 443 VAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF 511 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~---~~~~~~~ 511 (1120)
+--.++.+.++++..... ... ...+. .+...+-.++|++.++. |+.+-...-..++.+.. +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 766789999998843221 111 11221 24567999999999886 34445555556666543 2222111
Q ss_pred --------eccccCeEEEeeccCCCceEEEEEecCCeEEEEec
Q 001224 512 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 546 (1120)
Q Consensus 512 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 546 (1120)
......+.++++++. .+++++.......|..+|.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR 200 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence 123345778888765 4577888888888888884
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.74 E-value=1.2e-05 Score=88.31 Aligned_cols=205 Identities=15% Similarity=0.258 Sum_probs=127.2
Q ss_pred CCCCceEEEEecCCC-eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCe
Q 001224 363 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~ 440 (1120)
....+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 446677887766543 58999999999999887643211 1124667889999999999 7888
Q ss_pred EEEEE----CCCeEEEEEccCCcee-eeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeec
Q 001224 441 FGVAY----SRHIVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEG 513 (1120)
Q Consensus 441 las~~----~dg~v~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~ 513 (1120)
||.|- .|..+.|||+.++-.. .....+.+ -.....+++|..+.+ ++.+|...+.++++|++.. .....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88883 4567999999986211 01111222 344667899998877 7889999999999998732 212222
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEe-cCCCCCceeeeCC-C----CceeEEEEcCCCCeEEecccccceeEEE
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-G----RWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-~----~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
.+..+..+.+.|- .+.++++-. ||.|.+|| ....+.......+ . ..+..++|.|...
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------- 256 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------- 256 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc---------------
Confidence 1223334444341 224666655 99999999 4333322211111 1 1345555555432
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECC
Q 001224 588 FDTTKNRFLAAG-DDFSIKFWDMD 610 (1120)
Q Consensus 588 ~~~~~~~l~~~~-~dg~i~iwd~~ 610 (1120)
..+++.. ..++|+.+|+.
T Consensus 257 -----glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 -----GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -----chhhhhccCcceEEEeccc
Confidence 2344444 56788888875
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.017 Score=65.41 Aligned_cols=198 Identities=14% Similarity=0.140 Sum_probs=108.6
Q ss_pred EEEccCCCEEEEEeCC------------cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 830 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 830 l~~s~d~~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
++.+|.|.-+|...|. .|++|+.. |+.+..+.-..+.|.++.|+. +.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 5566666666666543 59999975 566666544448899999997 554 44567899999999862
Q ss_pred ce------eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccc-cceeeeccCCCCC---CCCCCcE-EEE
Q 001224 898 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTP---TAQSDTR-VQF 966 (1120)
Q Consensus 898 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~~~~~~~---~~~~i~~-~~f 966 (1120)
.. .+....-....+....+..+|-.+.+ .++.+.+- ...... ..+.+....+... ....... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 22 11111112222333344445633333 34444333 222211 1011111111000 0001111 234
Q ss_pred ccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 967 HQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 967 spdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+.+....+. ..++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|...+-.+.+..+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 445444443 4455566444332211 1 124689999999999999999999999999877666666665
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.012 Score=66.19 Aligned_cols=208 Identities=13% Similarity=0.124 Sum_probs=145.3
Q ss_pred CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEeecce
Q 001224 825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDE 899 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~~~~ 899 (1120)
.....+++++++..+.+.. ++.|.+.|..+.........- .....++++| +++.+.++.. ++.+.+.|..+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3345788889988666655 689999998776666555422 2678899999 5555544443 6889999988888
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-- 976 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-- 976 (1120)
.+.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... ...............++++|+|.++.+.
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEec
Confidence 77775433344 8899999999665554 78899999977643221 0000001111244789999999977774
Q ss_pred eC--CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-CcEEEEEcCCcceeeeeC
Q 001224 977 HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 977 ~d--~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~~~~~~~~~~~ 1040 (1120)
.+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.|.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 58999999988877663322223 56778999999998888544 889999999988887655
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.67 E-value=0.006 Score=68.94 Aligned_cols=217 Identities=17% Similarity=0.190 Sum_probs=117.1
Q ss_pred CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
...+..+.++|+|++++++++|...++.....+... .+.-...+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 445789999999999999999999999854443322 23456788998 565 55566688999973323333223
Q ss_pred ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 983 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i 983 (1120)
+... ..+..|-. |.+|...+.+ .|.+||+++++. +...+. ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-----i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-----IRRIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E-----EEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce-----eeEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 12333333 8888777655 799999998543 333322 1478999999999999988888888
Q ss_pred EEcCCc--------------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce--eeeeCCCcccCC
Q 001224 984 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1047 (1120)
Q Consensus 984 ~d~~~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~~~~~~~ 1047 (1120)
++.... ..+..+ ...|.+.+|..| -++. .+.. .++- +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiY-tT~~-~lkY--l~~Ge~~~i~~ld------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIY-TTSN-HLKY--LVNGETGIIAHLD------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEE-E-TT-EEEE--EETTEEEEEEE-S-------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEE-EcCC-eEEE--EEcCCcceEEEcC-------
Confidence 876544 222211 457888888665 3333 3333 5665 333332 22222
Q ss_pred CCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1048 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1048 g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
..++ -+.+.|. .+.+.....|+.+..+.+...
T Consensus 233 ----~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 ----KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ----S--E--EEEEETT-TTEEEEE-TT--EEEEE--HH
T ss_pred ----CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHH
Confidence 2244 4556663 578888889999988877543
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.65 E-value=0.00076 Score=74.82 Aligned_cols=129 Identities=11% Similarity=0.094 Sum_probs=90.4
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEE----eCCCc----EEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 427 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 427 (1120)
++...+.-.....++.||-...+.+.+- +.+|. -.+|++..++... ..+ +-.....
T Consensus 197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~s 260 (545)
T PF11768_consen 197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLPS 260 (545)
T ss_pred EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecCC
Confidence 4444444556668888887554444432 22443 4567776544221 111 1234677
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 507 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~ 507 (1120)
.|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|.|+|. ++++|+..|.+.+||+.-...
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCcc
Confidence 9999999999999999999999999999876422 223445688999999999 899999999999999865443
No 358
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00045 Score=72.56 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----------HHHHHHHHhccCHHHHHHHhccc-ccccCcccchhhH
Q 001224 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIF 73 (1120)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~~~~~-~~~~~~~~~~~~~ 73 (1120)
.+.+..+|..++...|..+.+..|-+|+|...+ +.++-++|..|+-.-|++.+..- ..+... ..++.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE 193 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLE 193 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHH
Confidence 344689999999999999999999999999752 77889999999999999999875 222221 12388
Q ss_pred HHHHHHHHHHHHccCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 74 FEIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 74 ~~i~~~~~lEll~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
|.|.++.|++++..|... +|+++.|+.++||........+.|-.+|
T Consensus 194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 999999999999999988 9999999999999775655555544433
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.61 E-value=0.01 Score=69.82 Aligned_cols=205 Identities=13% Similarity=0.092 Sum_probs=112.8
Q ss_pred CCeEEEEEecCCCcEEEEEe------CCCcEEEEEeecceeeEee-cccccceEEEEEccCCCEEEEEeCC-CCEEEE--
Q 001224 866 PAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGAD-SQLCVW-- 935 (1120)
Q Consensus 866 ~~i~~l~~sp~d~~~lasg~------~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iW-- 935 (1120)
..+...+++| +++.+|... .|+.-.||-...+.....+ .+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999 777776554 2444444433322222333 332 37889999999988877533 122222
Q ss_pred ---------ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE---EEcCCceeeec-----cccC
Q 001224 936 ---------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WVPR 998 (1120)
Q Consensus 936 ---------d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i---~d~~~~~~~~~-----~~~~ 998 (1120)
+++.++... .....|..+.|||||+.++...+++|.+ -....|. ... +. .
T Consensus 427 ~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~-~ 493 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG-P 493 (591)
T ss_pred CCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-c
Confidence 333322110 1124699999999999999976788877 4444454 111 11 1
Q ss_pred CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC-cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224 999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus 999 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
+-...+.++.|..++.++ ++..++...+|.+.- |.... . .+.+.....+ ++++-.+ ..++....+|.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-~-----~~~~n~~~~v--~~vaa~~---~~iyv~~~~g~ 561 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-A-----LPSRNLSAPV--VAVAASP---STVYVTDARAV 561 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc-c-----cCCCCccCce--EEEecCC---ceEEEEcCCce
Confidence 223346889999999965 555555555555432 21111 1 1221111112 3666665 24666666774
Q ss_pred EEEEecCCCCCCCCCCCCCCC
Q 001224 1078 VHVFEPLESEGKWGVPPPVDN 1098 (1120)
Q Consensus 1078 v~vW~~~~~~~~~~~~~p~~~ 1098 (1120)
+.+=.-.+++..|...++..+
T Consensus 562 ~~l~~~~~~~~~W~ev~~l~g 582 (591)
T PRK13616 562 LQLPNSDSGDQYWREVPGLMG 582 (591)
T ss_pred EEecCCCCCCCCceECccccC
Confidence 444322333477877665543
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.56 E-value=0.066 Score=62.84 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=86.3
Q ss_pred cEEEEEeecceeeEeecccccceEE---------EEEccCCC---EEEEEeCCCCEEEEECCCcccccceee---ecc--
Q 001224 889 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL---QIP-- 951 (1120)
Q Consensus 889 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~-- 951 (1120)
+|.-.|++||+..-.++.....++. +.+..+|+ .++.+..+|.+.+.|-.+|+....... +..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788888887766542222221 22224665 788999999999999999876311000 000
Q ss_pred --C---CCC--------------------C-CCCC--CcEEEEccCCcEEEE-EeC------------------------
Q 001224 952 --T---GRT--------------------P-TAQS--DTRVQFHQDQIHFLV-VHE------------------------ 978 (1120)
Q Consensus 952 --~---~~~--------------------~-~~~~--i~~~~fspdg~~la~-~~d------------------------ 978 (1120)
. +.. + ..+. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0 000 0 0000 022566676655554 111
Q ss_pred ---------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 979 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 979 ---------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+.|.-+|+.+++..-...... ....+. +.-.+.+++.++.||.++.+|..||+.+.+.+
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357778888887665443211 111111 12255577778889999999999999998877
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0039 Score=70.21 Aligned_cols=169 Identities=16% Similarity=0.150 Sum_probs=99.9
Q ss_pred CcceeeeccCCCCceEEEEecCCCeEEEEEeCCC---cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG---DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
..+...+......+..-+|+|+++.+....-..+ .+.++|+.+++.....+ -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 3344444456677888899999997555543333 49999999887654211 233445
Q ss_pred EEEEcCCCCeEEEEE-CCCe--EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc--EEEEECCCC
Q 001224 431 RVIWSPDGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNG 505 (1120)
Q Consensus 431 ~l~~spdg~~las~~-~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~--i~vwd~~~~ 505 (1120)
.-+|||||++||.+. .||. |.+.|+.++...+ +..-.+.-..-.|+|||+. ++.+.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 678999999988764 4565 5566777766322 4333333347789999997 4444555555 555565544
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEec-CCe--EEEEecCCCC
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLG 550 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~ 550 (1120)
.. ..+....+.-..-. .+++|++++..+. +|. |.+.|+.+..
T Consensus 317 ~~-~riT~~~~~~~~p~--~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 317 QV-TRLTFSGGGNSNPV--WSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ce-eEeeccCCCCcCcc--CCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 43 33322222111223 3567777777664 344 4555554443
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.092 Score=59.17 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=156.5
Q ss_pred CccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
....+.+.+++..+.+.. ...+...+...................+++++.+.+..+....+..|.+.|..+.+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455678888886666554 234555555422211212211134567888884455666666678999999877766655
Q ss_pred ecccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 978 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d 978 (1120)
..--. .-..++++++++.+..+.. ++++.+.|-.+.+... ..+.+.. -..++++|+|..+.+. .+
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~----~~~vG~~-----P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA----TIPVGNT-----PTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE----EEecCCC-----cceEEECCCCCeEEEEecCC
Confidence 43222 4568999999987766555 5777777777654322 2333322 2889999999988875 58
Q ss_pred CeEEEEEcCCceeeecccc---CCCCCCeeEEEECCCCcEEEEEEcC---CcEEEEEcCCcceeeeeCCCcccCCCCCCC
Q 001224 979 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSS 1052 (1120)
Q Consensus 979 ~~v~i~d~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~ 1052 (1120)
+.|.+.|..+....+ ... -.-......+.++|||.++.+.... +.+.+.|..++.......+. ..
T Consensus 182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~ 252 (381)
T COG3391 182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------GS 252 (381)
T ss_pred CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------cc
Confidence 899999987776664 110 0114456788999999987766554 48999999998887652211 11
Q ss_pred CccceEEEecCCCCCEEEEEeC-CCcEEEEecCCCC
Q 001224 1053 NVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESE 1087 (1120)
Q Consensus 1053 ~v~~~~i~~~p~d~~~l~s~~~-Dg~v~vW~~~~~~ 1087 (1120)
. .+..+..+| ++..+.+... .+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 234688999 5777766644 4888888877755
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.2 Score=56.91 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=75.8
Q ss_pred EEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc-c
Q 001224 831 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 908 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~ 908 (1120)
.++.+....+... ++.+.+.+....+. +. ..+++..|++|| ++++||.-..+|.+.|.+..-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555555444 56666555433211 22 246799999999 9999999999999999876555555555433 3
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~ 988 (1120)
.....|.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|+.-.+
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 345566665443222221 22233332111 234444444444445444577776666
Q ss_pred ceeeecc
Q 001224 989 LECVKQW 995 (1120)
Q Consensus 989 ~~~~~~~ 995 (1120)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 6555443
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.49 E-value=0.099 Score=56.62 Aligned_cols=228 Identities=16% Similarity=0.133 Sum_probs=109.3
Q ss_pred EEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCeEEEEECC
Q 001224 371 DFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSR 447 (1120)
Q Consensus 371 ~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d 447 (1120)
+|.+||+.||.++..|| .+.+-|+++++... |.... .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 58999998899888777 46777888887665 22222 223356778988988777667
Q ss_pred CeEEEEEccCCceeeeeeeecccccCeEEEEEc--CCCCceEEEEe----------------------cCCCcEEEEECC
Q 001224 448 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLCVITC----------------------GDDKTIKVWDAT 503 (1120)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s--~d~~~~~l~s~----------------------s~d~~i~vwd~~ 503 (1120)
..|+--|+++.+.. .+ +.-..+-+-...|. .|+. .++.. -..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78988999997643 33 33344445445553 4555 23221 112356666777
Q ss_pred CCceeEEeeccccCeEEEeeccCCCceEEEEEec---CC-eEEEEecCCCCCce-eee--CCCCceeEEEEcCCCCeEEe
Q 001224 504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DG-KIKAWLYDNLGSRV-DYE--APGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg-~i~iwd~~~~~~~~-~~~--~~~~~v~~~~~s~~g~~~~~ 576 (1120)
+|+....+. -...+..+.|+|... ..|+-|-. +. .-|+|-+++.+... .+. .....+..=-|.|||..++
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~- 253 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW- 253 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE-
T ss_pred CCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE-
Confidence 777655544 445666777776543 34444332 22 23677666533222 111 1222334445677776322
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 645 (1120)
.....+. +.+..|.-+|+.+++........ ....+..++||++++-=+.|
T Consensus 254 --------y~~~~~~-------~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 254 --------YDSYTPG-------GQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --------EEEEETT-------T--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred --------EEeecCC-------CCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 2222222 23445666677777654333221 24456667899887654443
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.016 Score=65.26 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=107.7
Q ss_pred cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe---CC-CcEEEEEeecceeeEe--ecccccceEEEEEccC
Q 001224 846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSK--LKGHSKRITGLAFSHA 919 (1120)
Q Consensus 846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~d-g~v~vwd~~~~~~~~~--l~~h~~~V~~l~~s~d 919 (1120)
.+.+-|.+ +.....+......+..-+|+| ++..++.-. .. ..++++++.+++.... +.++. ..-+|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence 35555544 444455554555677788999 666554432 22 3599999998764433 34443 35789999
Q ss_pred CCEEE-EEeCCCCEEEE--ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC----eEEEEEcCCceee
Q 001224 920 LNVLV-SSGADSQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECV 992 (1120)
Q Consensus 920 ~~~l~-s~s~Dg~v~iW--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~----~v~i~d~~~~~~~ 992 (1120)
|+.|+ +...||...|| |+.++. ..+ +....+ .-..-.|+|||++++...|. .|.+++.+.+...
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~--~~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKN--LPR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCc--cee-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 98876 55667765555 555543 222 222222 22466899999999985443 5888888777653
Q ss_pred eccccCCCCCCeeEEEECCCCcEEEEEEcC-Cc--EEEEEcCCcceee
Q 001224 993 KQWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKLRC 1037 (1120)
Q Consensus 993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~--v~iwd~~~~~~~~ 1037 (1120)
+... .+ +.-..-.|||||++++..+.. |. |.+.|+.++....
T Consensus 320 riT~-~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 320 RLTF-SG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred Eeec-cC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 3322 12 112267899999999877643 44 7777777666433
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.37 E-value=0.12 Score=59.51 Aligned_cols=245 Identities=13% Similarity=0.126 Sum_probs=123.3
Q ss_pred ceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 367 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 367 v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+....+||||++++++-+..| +|+|.|+++|+.+.. .+ .. ..-..++|++|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 346789999998666656655 499999999977652 11 11 1122399999998877
Q ss_pred EEECCC-----------eEEEEEccCCceeeeeeeecccccC--eEEEEEcCCCCceEEEEecCC--CcEEEEECCCC--
Q 001224 443 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGDD--KTIKVWDATNG-- 505 (1120)
Q Consensus 443 s~~~dg-----------~v~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~d~~~~~l~s~s~d--~~i~vwd~~~~-- 505 (1120)
....+. .|..|.+.+...- ....+.+.... ...+..++|++.+++.+.+.. ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 665332 3777787766432 11234443333 578899999996333233322 34788888765
Q ss_pred --ceeEEeeccccCeEEEeeccCCCceEEEEEec---CCeEEEEecCCCCCc--e-eeeCCCCceeEEEEcCCCCeEEec
Q 001224 506 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSR--V-DYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 506 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~--~-~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
.....+......+....-+. . +.+++.... .+.|...++...... . .+..+..
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~----------------- 325 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE----------------- 325 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-----------------
T ss_pred CcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-----------------
Confidence 23333333333333222222 2 233333322 345655566554321 1 1111111
Q ss_pred ccccceeEEEEcCCCCEEEEE-eCC--CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC----CCcEEE
Q 001224 578 FRKRSLGVVQFDTTKNRFLAA-GDD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKI 650 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i 650 (1120)
......+...+++|+.. ..+ ..|+++++..+.....+.... ...|..+...+++..+..... -+++..
T Consensus 326 ----~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 326 ----DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYR 400 (414)
T ss_dssp ----SEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred ----ceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 11111222223345543 333 358889998444455544332 223455555555554443322 356777
Q ss_pred EEccCc
Q 001224 651 LATSDG 656 (1120)
Q Consensus 651 wd~~~~ 656 (1120)
||+.++
T Consensus 401 ~d~~t~ 406 (414)
T PF02897_consen 401 YDLATG 406 (414)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 888776
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.36 E-value=0.069 Score=57.57 Aligned_cols=234 Identities=11% Similarity=0.127 Sum_probs=132.5
Q ss_pred CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc
Q 001224 767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 846 (1120)
Q Consensus 767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~ 846 (1120)
..++.|+.|+++| +.++++... ..... ..+...|..+.+.++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~-----i~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR-----ILKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee-----EeecceEEEEEEecccCEEEEEcCCc
Confidence 4567789998888 777775110 00000 00334499999999999999999999
Q ss_pred EEEEEcCCCceeeee--------------cCCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEEeecc-----eeeEeec
Q 001224 847 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 905 (1120)
Q Consensus 847 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~ 905 (1120)
+.++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+.+.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 11223344444 1122445555554 458999888753 3445554
Q ss_pred ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC-----CCCCCCcEEEEccCCcEEEEEeCCe
Q 001224 906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQDQIHFLVVHETQ 980 (1120)
Q Consensus 906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~fspdg~~la~~~d~~ 980 (1120)
- ...+.+++|. ++.|+.|..++ ..+.|+.++.... ......... ........+.--+++.+|++- +..
T Consensus 137 l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~ 209 (275)
T PF00780_consen 137 L-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNI 209 (275)
T ss_pred c-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE--EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cce
Confidence 3 3678899998 55677776555 8889998754321 111111000 000111222223345666543 333
Q ss_pred EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
-...|. .|+..+.... .-...+.++++ ...||++.+. +.|.||++.++++++.+.
T Consensus 210 g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333333 3433321000 11345666666 4457776654 569999999999998876
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.29 E-value=0.012 Score=69.36 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=104.2
Q ss_pred CCccEEEEccCCCEEEEEe-------CC--cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC--------
Q 001224 825 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 887 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------- 887 (1120)
..+.+.+++|||+.++... |. .|.+++... .. ..+.. ....+.-.|+| ||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999888654 32 466666532 22 23321 22478889999 77777666432
Q ss_pred ----CcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEE---EECCCcccccceeeeccCCCCCCCCC
Q 001224 888 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 960 (1120)
Q Consensus 888 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1120)
+.+.+.++..++... ...+.|..+.|||||..++... ++.|.+ -....|+...........+-. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444333222 2345799999999999988766 467776 443444321111111111111 23
Q ss_pred CcEEEEccCCcEEEEEeCCe--EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224 961 DTRVQFHQDQIHFLVVHETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus 961 i~~~~fspdg~~la~~~d~~--v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
+..+.|..++.+++...++. +...++.... ...+.......++.+|+=+++ -++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 57899999999765544333 4444444222 111122123566777776653 344455566333
No 369
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=0.00032 Score=77.48 Aligned_cols=253 Identities=15% Similarity=0.176 Sum_probs=151.8
Q ss_pred CCCccEEEEccCCC--EEEEEe-CCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEe----CCCcEEEEE
Q 001224 824 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN 894 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~--~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~----~dg~v~vwd 894 (1120)
...+.|++..-+.. .+++|. +|.|.+-......- ....+++....++++|++-|...||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34456666554433 566776 79888887764322 2345567788999999998888999884 456899999
Q ss_pred eecc--e--eeEeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-
Q 001224 895 VRVD--E--VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ- 968 (1120)
Q Consensus 895 ~~~~--~--~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp- 968 (1120)
+.++ - ....|.+ -.....+++|-.|.+++.+|...+.+.++|++....... .+++ ..+..+..+|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--------hhcccceecCC
Confidence 9876 1 1122222 334466889998999999999999999999874211111 1111 1356677888
Q ss_pred CCcEEEEEeCCeEEEEEc-CCce-eeeccccCC--CCCCeeEEEECCCCc-EEEEEEcC-CcEEEEEcCCc------cee
Q 001224 969 DQIHFLVVHETQLAIFET-TKLE-CVKQWVPRE--SSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAANL------KLR 1036 (1120)
Q Consensus 969 dg~~la~~~d~~v~i~d~-~~~~-~~~~~~~~~--h~~~v~~l~~s~dg~-~l~s~~~D-g~v~iwd~~~~------~~~ 1036 (1120)
.+.|++...|+.|.+||. .+-+ .+..+.-.. -...+..++|.|-.. .|++...| ++|+.+|+..- +..
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 788999988999999993 3322 222221110 123489999999543 45555544 78999987421 111
Q ss_pred eeeCCCcccCCCCCC--CCccceEEEecCCC-CCEEEEEeCCCcEEEEecCCCC
Q 001224 1037 CRINPSAYLPAGVSS--SNVHPLVIAAHPQE-PNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1037 ~~~~~~~~~~~g~~~--~~v~~~~i~~~p~d-~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
..+......|-.|.+ ..|. ...||+.+ -....++-..-+..-+++.+.-
T Consensus 287 ~~~~~~s~~~~q~~~~~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~e~~ 338 (783)
T KOG1008|consen 287 VFVNYESKYPVQPNSQCSGID--FFTWHTASPTERQILGVINLQPKDFSVHEEV 338 (783)
T ss_pred ceeeeccccccccccccccee--ecCcCcCCccceeEEeeccCChhhccchhhe
Confidence 111112211222222 2233 56667654 2334555555566656655433
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.13 Score=55.30 Aligned_cols=221 Identities=13% Similarity=0.090 Sum_probs=125.6
Q ss_pred EEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec--
Q 001224 830 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-- 905 (1120)
Q Consensus 830 l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-- 905 (1120)
..|.++...|+-.. .+.|.-|+..+++. ..+... ..+.++..-. .+..|+++ +.-+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE--ccccEEEeccCCceeEEeccc
Confidence 34666777666555 68899999876543 333322 2334443333 33344433 2346677766555432221
Q ss_pred --c-cccceEEEEEccCCCEEEEEeC-----C----CCEEEEECCC-cccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224 906 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 906 --~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~v~iWd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
+ ....-+.+...|+|.+.++... . ..-.+|.++. +. ..+...++. ..-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCE
Confidence 1 1244567888899887775444 0 1124555552 21 111222211 13378999999988
Q ss_pred EEEE--eCCeEEEEEcCC--cee---eeccccCCCCCCeeEEEECCCCcEEEEEEcCC-cEEEEEcCCcceeeeeCCCcc
Q 001224 973 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus 973 la~~--~d~~v~i~d~~~--~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
|..+ ..+.|.-|++.. +.. ..........+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---- 251 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---- 251 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence 8775 447788777652 211 11122223356677788888888876555554 89999988 99998888
Q ss_pred cCCCCCCCCccceEEEecCCCCCEEEEEeC
Q 001224 1045 LPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1074 (1120)
Q Consensus 1045 ~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~ 1074 (1120)
+|. ..+..++|--.+.+.|.+.+.
T Consensus 252 lP~------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 252 LPV------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC------CCCccceEeCCCcCEEEEEec
Confidence 442 123367776545566555443
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.07 E-value=0.22 Score=53.66 Aligned_cols=226 Identities=12% Similarity=0.122 Sum_probs=126.1
Q ss_pred ccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee--------
Q 001224 833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-------- 904 (1120)
Q Consensus 833 s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-------- 904 (1120)
...++.|+.|.++.+.+++........... +...|..+...| +-+.|++-+ |+.++++++.........
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 346788999995449999993322222222 223499999999 544554443 599999998764433211
Q ss_pred ------cccccceEEEE--EccCC-CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 905 ------KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 905 ------~~h~~~V~~l~--~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
......+...+ -...+ ..|+.+ ....|.+|.............+...-. ..+..++|. +..+++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp----~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP----DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC----CCcEEEEEe--CCEEEE
Confidence 11122333333 11233 344444 455899998876422110111111111 367888888 667788
Q ss_pred EeCCeEEEEEcCCceeeeccccCCC----------CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee--eeCCCc
Q 001224 976 VHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSA 1043 (1120)
Q Consensus 976 ~~d~~v~i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~--~~~~~~ 1043 (1120)
+..+...+.|+.++.....+..... ..++..+.. +++.+|++- |..-.+.|. .|+..+ .+.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~--- 226 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ--- 226 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE---
Confidence 8788899999997766544322111 223444444 346777643 333333343 444332 222
Q ss_pred ccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.. ..|.++++.. .+|+..+. +.|.||++.+++
T Consensus 227 -W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 -WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred -cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 11 1244677763 46666665 559999999997
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.07 E-value=0.031 Score=66.69 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=98.2
Q ss_pred CCcEEEEE-eCCCcEEEEEeecceeeEeecccccc-eEEEEEcc-----CCCEEEEEeCCCCEEEEECCCcccccceeee
Q 001224 877 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 949 (1120)
Q Consensus 877 d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 949 (1120)
+.++|..- .....|+-.|+..|+.+..+..|... |..++-.. ....-..|-.+..+..||.+-.. ..+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 44444443 35578999999999999999988754 55443321 12234556677889999988632 11121
Q ss_pred ccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 950 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 950 ~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
.............|++-+.+|...+.+.+|.|++||-. |...++.. ++-..+|.+|..+.||+||++.+ +..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 11111112235678888888877777899999999953 43334433 25578999999999999988766 66777777
Q ss_pred c
Q 001224 1030 A 1030 (1120)
Q Consensus 1030 ~ 1030 (1120)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.07 E-value=0.032 Score=61.59 Aligned_cols=179 Identities=12% Similarity=0.147 Sum_probs=102.5
Q ss_pred CCEEEEEeC-----------CcEEEEEcCCC----ceeeee--cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 836 DSYVMSASG-----------GKISLFNMMTF----KTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 836 ~~~l~~~sd-----------g~i~vwd~~~~----~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
..++++|.. |.|.++++... ..+..+ ....++|++++-- +++ |+++. ++.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence 467887731 77999999873 122221 2246778888876 455 44333 579999999987
Q ss_pred e-eeEeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-
Q 001224 899 E-VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 975 (1120)
Q Consensus 899 ~-~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~- 975 (1120)
+ ....-.- ....++++... +++++.|+....+.++..+..........+... ...++++.|-+++..+++
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~-----~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQ-----PRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS------BEEEEEEEE-SSSEEEEE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCC-----CccEEEEEEecCCcEEEEE
Confidence 7 4332221 22245555554 669999999888998866542111111111111 135788888866655555
Q ss_pred EeCCeEEEEEcCCc-----------eeeeccccCCCCCCeeEE---EECCC--Cc------EEEEEEcCCcEEEE
Q 001224 976 VHETQLAIFETTKL-----------ECVKQWVPRESSAPITHA---TFSCD--SQ------LVYACFLDATVCVF 1028 (1120)
Q Consensus 976 ~~d~~v~i~d~~~~-----------~~~~~~~~~~h~~~v~~l---~~s~d--g~------~l~s~~~Dg~v~iw 1028 (1120)
-.+|.+.++..... .....+. ....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 47899999887631 1222222 25678887 55552 22 37778899998844
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.1 Score=52.75 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=134.8
Q ss_pred cEEEEccCCCE-EEEEe-CCc-EEEEEcCCCceeeeecCCCCC--eEEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001224 828 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 897 (1120)
Q Consensus 828 ~~l~~s~d~~~-l~~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 897 (1120)
..++++|.-.. ++.+- -|+ ..++|..+.+...++...++. --.=.||| ||++|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 34677765443 33444 344 678898887776665433322 12236999 89988865443 6899999875
Q ss_pred c-eeeEeecccccceEEEEEccCCCEEEEEeCC------------------CCEEEEECCCcccccceeeeccCCCCCCC
Q 001224 898 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 958 (1120)
Q Consensus 898 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 958 (1120)
+ +.+..+..|.-.-..+.|.+||+.|+.+... -++.+-|..+|+...+..+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 3 4567777787777789999999999876431 1233334333333222222211111
Q ss_pred CCCcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceeeeccccC-----CCCCCeeEEEECCCCcEEEEEEc-CCcEE
Q 001224 959 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL-DATVC 1026 (1120)
Q Consensus 959 ~~i~~~~fspdg~~la~~-~d~-----~v~i~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~ 1026 (1120)
.+|..++..+||..++.+ ..| --.+=-...++.+.-+... .....|-+|+...+..+++..+- .+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 367888888888877763 221 1111111222222221110 12456788888877777665554 45688
Q ss_pred EEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224 1027 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1027 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
|||..+|+.+.... +++- . .++- ...-+++.+.+|.+.++
T Consensus 306 i~da~tG~vv~~a~----l~da------a--Gva~---~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 306 IWDAATGAVVSEAA----LPDA------A--GVAA---AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEcCCCcEEeccc----cccc------c--ccee---ccCceEEecCCceEEec
Confidence 99999999986543 2221 1 1222 23345555567887766
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.05 E-value=0.016 Score=69.18 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=96.7
Q ss_pred CCceEEEEecCCCcEEEEECCCCceeEEeeccccC-eEEEeeccC---CCceEEEEEecCCeEEEEecCCCCCceee-eC
Q 001224 483 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDY-EA 557 (1120)
Q Consensus 483 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~ 557 (1120)
.+.++|........|+-.|+..|+.+..+..|... |..++-... -+..-.+.|-.+..+..||.+-.+..... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34435555566788999999999999999887754 766653211 01234566777899999999864421110 00
Q ss_pred CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
+ ...+...+.|++-+.+| ++|+|+.+|.||+||--..+....+.+-+ .+|..+..+.||+
T Consensus 572 k-----------------~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk 631 (794)
T PF08553_consen 572 K-----------------QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK 631 (794)
T ss_pred c-----------------ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence 0 00112244455444444 59999999999999954333333343333 4799999999999
Q ss_pred EEEEEECCCcEEEEEc
Q 001224 638 LLAVSTNDNGIKILAT 653 (1120)
Q Consensus 638 ~l~~~~~dg~i~iwd~ 653 (1120)
++++.+. ..+.+++.
T Consensus 632 wilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 632 WILATCK-TYLLLIDT 646 (794)
T ss_pred EEEEeec-ceEEEEEE
Confidence 9887664 57777775
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.05 E-value=0.16 Score=58.55 Aligned_cols=239 Identities=12% Similarity=0.100 Sum_probs=125.1
Q ss_pred ccEEEEccCCCEEEEEe--CC----cEEEEEcCCCceeeee-cCCCCCeEEEEEecCCCcEEEEEe-CC----------C
Q 001224 827 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGM-DD----------S 888 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~-~d----------g 888 (1120)
+....+||||+++|.+- .| .|+++|+.+++.+... .. .....+.|.+ |++.|+... .+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 34 4999999998766432 21 1123499999 655554443 22 2
Q ss_pred cEEEEEeeccee--eEeecccccc--eEEEEEccCCCEEEEEeC-C---CCEEEEECCCc--ccccceeeeccCCCCCCC
Q 001224 889 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGA-D---SQLCVWSSDGW--EKQKNRFLQIPTGRTPTA 958 (1120)
Q Consensus 889 ~v~vwd~~~~~~--~~~l~~h~~~--V~~l~~s~d~~~l~s~s~-D---g~v~iWd~~~~--~~~~~~~~~~~~~~~~~~ 958 (1120)
.|+.|.+.+... ...+...... ...+..++|+++|+.... . ..+.+-++..+ ......++.....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~----- 277 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED----- 277 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-----
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-----
Confidence 377777766432 2334443333 567889999999774332 2 23667777764 1112222222111
Q ss_pred CCCcEEEEccCCcEEEEE----eCCeEEEEEcCCcee---eeccccCCCCC--CeeEEEECCCCcEE-EEEEcCC--cEE
Q 001224 959 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVC 1026 (1120)
Q Consensus 959 ~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~l-~s~~~Dg--~v~ 1026 (1120)
.+....-+.++.+++.+ .++.|.-.++..... ...+. .|.. .+..+.. .+.+| +....++ .|+
T Consensus 278 -~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 -GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp -S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred -ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 23333333355444443 345777778776653 11222 3344 3444444 44444 4444554 488
Q ss_pred EEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC---CcEEEEecCCCC
Q 001224 1027 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1087 (1120)
Q Consensus 1027 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D---g~v~vW~~~~~~ 1087 (1120)
++++..+.....+. ++.. ..+. .+...+....+.++.++- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998444444444 2211 1122 344444333444444332 578888888877
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.23 Score=53.42 Aligned_cols=230 Identities=13% Similarity=0.068 Sum_probs=130.7
Q ss_pred EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeE
Q 001224 371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 450 (1120)
Q Consensus 371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v 450 (1120)
.|.|++..|+.+.-..+.|+-|+..+++... +. +.+.+.++..-.++..|+++. .-+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HGV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--ccc
Confidence 4677777778887788999999998775432 11 223445555545555555543 336
Q ss_pred EEEEccCCceeeeeeeec-cc-ccCeEEEEEcCCCCceEEEEecC------C---CcEEEEECC-CCceeEEeeccccCe
Q 001224 451 QIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAPV 518 (1120)
Q Consensus 451 ~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~d~~~~~l~s~s~------d---~~i~vwd~~-~~~~~~~~~~h~~~v 518 (1120)
.+++.+++..+....... +. ...-+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-..-
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 677776665423222221 22 23567888899998 3333222 0 112455544 567777666666666
Q ss_pred EEEeeccCCCceEEEEEe-cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 519 YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
+.++|+++. +.++.+. ..+.|..|++...... .... ... .......+....++.+.+|++.++
T Consensus 166 NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~---------~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 166 NGLAFSPDG--KTLYVADTPANRIHRYDLDPATGP----IGGR-RGF---------VDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred CceEECCCC--CEEEEEeCCCCeEEEEecCcccCc----cCCc-ceE---------EEccCCCCCCCceEEeCCCCEEEe
Confidence 788986654 4555554 4578888877631100 0000 000 111111123334566677776655
Q ss_pred EeCCC-eEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001224 598 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 644 (1120)
Q Consensus 598 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 644 (1120)
+..+| .|.+|+.+ |+.+..+.... ..+++++|-- +.+.|.+.+.
T Consensus 230 a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 44444 99999998 89888887663 3577788854 5555555443
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.03 E-value=0.16 Score=56.07 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=120.6
Q ss_pred CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC----CCeEEEEEC----------CCeEEE
Q 001224 387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS----------RHIVQI 452 (1120)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~las~~~----------dg~v~i 452 (1120)
..|++.|..+.+.+....+.- ..+-..+..+.|..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 467888888888776554431 111123334444433 578888753 289999
Q ss_pred EEccCC----ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeec-cccCeEEEeeccC
Q 001224 453 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEG-HEAPVYSVCPHHK 526 (1120)
Q Consensus 453 wd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~-h~~~v~~~~~~~~ 526 (1120)
+++... ..++.... ....++|++++-- .+. ++++. .+.|.+|++...+ ....-.. ....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 23433322 2357889998866 333 33333 4789999998887 4433221 22356666542
Q ss_pred CCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEE
Q 001224 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 606 (1120)
Q Consensus 527 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 606 (1120)
. ++++.|...+.+.++.++..... ..-++-.... ..+..+.+-++++.++++..+|.+.+
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~---------l~~va~d~~~---------~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNK---------LILVARDYQP---------RWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE----------EEEEEEESS----------BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred c--cEEEEEEcccCEEEEEEEccCCE---------EEEEEecCCC---------ccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 2 48888988888887755442211 1111111111 13344444434457889999999999
Q ss_pred EECCC-------C--ceeEEEecCCCCCCcCeE---EEcC--CC------CEEEEEECCCcEEEEEc
Q 001224 607 WDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 607 wd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iwd~ 653 (1120)
+.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|.+.-.
T Consensus 199 l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 199 LRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 87752 1 22222222222 245555 4445 22 24888889999985433
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.003 Score=70.29 Aligned_cols=94 Identities=18% Similarity=0.434 Sum_probs=71.7
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE-EEEEcCCCCeEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG 442 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~la 442 (1120)
...|.-+.|+|.-. |+|++..+|.|.+..+. .+++ |+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence 45677899999988 79999999999998876 4443 33 222455566 999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 480 (1120)
+|-.||+|++-|++++..+... +..-...|.++-|+
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998766421 12234567777775
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.99 E-value=0.18 Score=56.16 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=61.3
Q ss_pred EEEEcCCCCeEEEEECCCeEEE---EEccC-C----c-eeeeeeeecccc-cCeEEEEEcCC---C------CceEEEEe
Q 001224 431 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G----D-EVRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 491 (1120)
Q Consensus 431 ~l~~spdg~~las~~~dg~v~i---wd~~~-~----~-~~~~~~~l~~h~-~~V~~v~~s~d---~------~~~~l~s~ 491 (1120)
.++.+|++++||.+..+..+.+ |+... + . .+.....+.... ..|+++.+-|= . ...+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988887666 64421 1 1 111112222221 46777666432 1 11289999
Q ss_pred cCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224 492 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 492 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 524 (1120)
..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999999 6888776666688888888653
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.019 Score=62.64 Aligned_cols=207 Identities=12% Similarity=0.131 Sum_probs=117.5
Q ss_pred CCceEEEEEcC-CCCeEEEEECC------CeEEEEEccCCceeee----eeeecccccCeE-EEEEcCCCCceEEEEecC
Q 001224 426 GVSVNRVIWSP-DGSLFGVAYSR------HIVQIYSYHGGDEVRQ----HLEIDAHVGGVN-DIAFSHPNKQLCVITCGD 493 (1120)
Q Consensus 426 ~~~V~~l~~sp-dg~~las~~~d------g~v~iwd~~~~~~~~~----~~~l~~h~~~V~-~v~~s~d~~~~~l~s~s~ 493 (1120)
.+.|.++++.. +..+|+.+... ..|-|+.-+.|-+++. .....+|+-.-. .|-...+ ..+++.++..
T Consensus 276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~d-snlil~~~~~ 354 (644)
T KOG2395|consen 276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRAD-SNLILMDGGE 354 (644)
T ss_pred hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccc-cceEeeCCCC
Confidence 34677788875 56677766542 3333443322222210 001112221111 1222233 3346777888
Q ss_pred CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEE-----EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEc
Q 001224 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 568 (1120)
Q Consensus 494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 568 (1120)
...++--|++.|+.+..+.-|.. |.-+.+.++..+..+ +.|-.|..|.-||.+-...- .+++.
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----------kl~~~ 422 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----------KLAVV 422 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----------eeeee
Confidence 88899999999999999987766 655666555544433 33455788999998743321 00110
Q ss_pred CCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcE
Q 001224 569 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 648 (1120)
Q Consensus 569 ~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 648 (1120)
. + +-| .++....|.+-..+ .++++||.+|.|++||--..+....+++-+. .|..+..+.||+++++.+ +..+
T Consensus 423 q-~-kqy--~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc-~tyL 494 (644)
T KOG2395|consen 423 Q-S-KQY--STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKWILATC-KTYL 494 (644)
T ss_pred e-c-ccc--ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcEEEEec-ccEE
Confidence 0 0 000 01113333333333 3699999999999999833333344444433 789999999999988655 4566
Q ss_pred EEEEc
Q 001224 649 KILAT 653 (1120)
Q Consensus 649 ~iwd~ 653 (1120)
.+.++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 66664
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.15 Score=51.58 Aligned_cols=238 Identities=17% Similarity=0.191 Sum_probs=119.4
Q ss_pred EEEEeCCCe-EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----CcEEEEEccCcchhhhhcccccc
Q 001224 595 FLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDGIRLLRTFENLAY 668 (1120)
Q Consensus 595 l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 668 (1120)
++.+-.-|+ ..++|....+...++....+....-.=.|||||.+|...-+| |.|-+||...+...+-.+..|..
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi 162 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI 162 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc
Confidence 333444443 567888777766666433322222235799999999987543 78999998866554444443322
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCccee--------eecccC
Q 001224 669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV--------WKLTEL 740 (1120)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v--------w~~~~~ 740 (1120)
.. .++...+|+..++.+.. -|.. .+++.+
T Consensus 163 Gp-----------------------------------------Hev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM 199 (366)
T COG3490 163 GP-----------------------------------------HEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM 199 (366)
T ss_pred Cc-----------------------------------------ceeEEecCCcEEEEeCC--ceecccccCccccchhhc
Confidence 21 12333456666655442 1111 122222
Q ss_pred CCC---------ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccC-CCCccccccCceeecCCC
Q 001224 741 SEP---------NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPS 810 (1120)
Q Consensus 741 ~~~---------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~w~~~~ 810 (1120)
+.. ..+....+|...+.-.|..++..+||+.++.+--.|.- .+.. .-+.......++..+...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~-------~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR-------NDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC-------ccCCcceeeccCCCcCcccCCCH
Confidence 211 11122233333355667777887777743332211110 0000 000000000111122111
Q ss_pred CCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001224 811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 888 (1120)
Q Consensus 811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 888 (1120)
.+... ....|-+++.+.+..+++..+ .+...+||..++..+..-.- .....++-.. + =+++.+.+|
T Consensus 273 e~~~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~--~-gf~vssg~G 340 (366)
T COG3490 273 EQTAA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK--G-GFAVSSGQG 340 (366)
T ss_pred HHHHH-------HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc--C-ceEEecCCc
Confidence 11111 235677899988778888777 56789999999987654321 1223333332 2 244455678
Q ss_pred cEEEEE
Q 001224 889 SIQIYN 894 (1120)
Q Consensus 889 ~v~vwd 894 (1120)
.+.++.
T Consensus 341 ~~~~~s 346 (366)
T COG3490 341 RIIFYS 346 (366)
T ss_pred eEEecc
Confidence 888774
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.84 E-value=0.0026 Score=43.81 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.4
Q ss_pred ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 936 (1120)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0053 Score=68.39 Aligned_cols=95 Identities=9% Similarity=0.134 Sum_probs=77.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE-EEEEccCCCEEEEEeCCCCEEEEECCCcccc
Q 001224 865 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 943 (1120)
Q Consensus 865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~ 943 (1120)
...|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34688899999 88899999999999999988 777888887888888 9999999999999999999999999997654
Q ss_pred cceeeeccCCCCCCCCCCcEEEEcc
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
....... ...|.++.|++
T Consensus 98 ~~~~~s~-------e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSV-------ETDISKGIWDR 115 (665)
T ss_pred ecccccc-------ccchheeeccc
Confidence 4331111 13567777763
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.043 Score=65.25 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=70.5
Q ss_pred EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 458 (1120)
Q Consensus 379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~ 458 (1120)
+++.|+..|.|...|+...-... .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 58889988999988886531100 00 1224579999999999999999999999999999998
Q ss_pred ceeeeeeeeccccc---CeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224 459 DEVRQHLEIDAHVG---GVNDIAFSHPNKQLCVITCGDDKTIKVWDA 502 (1120)
Q Consensus 459 ~~~~~~~~l~~h~~---~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~ 502 (1120)
+.++. +..|.. .|..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 87763 333433 344445555555 5788877776 6654
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.043 Score=60.10 Aligned_cols=144 Identities=10% Similarity=0.124 Sum_probs=99.5
Q ss_pred EEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCE--E-----EEEeCCCCEEEEECCCcccccceeeeccC
Q 001224 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIPT 952 (1120)
Q Consensus 880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~ 952 (1120)
+|..+.....++-.|+..|+.+..+.-|.. |+-+.+.|+.+. | +.|=.|..|.-||.+-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 444555566888889999999999998877 888888887532 2 23556788999998743221 222223
Q ss_pred CCCCC-CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224 953 GRTPT-AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 953 ~~~~~-~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
++.=. .....|.+-..+|..++.+.+|.|++||. .+...++..+ +-..+|..|..+.||++|++.+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 32211 12345666666776666679999999998 5655555443 6688999999999999988665 566666664
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.51 E-value=0.15 Score=44.36 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=65.4
Q ss_pred ceEEEEec---CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 367 PMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 367 v~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
|++|++.. ||+.-|++|+.|..|+||+-+ +.+.+ ..-.+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 56666655 565669999999999999854 23321 113457888877766 67999
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc---CCCCceEEEEecCCCcEE
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIK 498 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s---~d~~~~~l~s~s~d~~i~ 498 (1120)
+-.+|+|-+|+-... +. ..+. ...+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976432 21 1222 2235555443 33433 478887787763
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.43 E-value=1.7 Score=48.63 Aligned_cols=83 Identities=7% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE-EEEEecCC----------------Cc-EEEE
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQD----------------NN-IIAI 883 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~d----------------~~-~las 883 (1120)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++.+++-.+.-. -+...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 445688999999998888876 49999999999988887776443211 11111100 11 3344
Q ss_pred EeCCCcEEEEEeecceeeEeec
Q 001224 884 GMDDSSIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 884 g~~dg~v~vwd~~~~~~~~~l~ 905 (1120)
+-.-|.|.||+++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5567889999988877665543
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.42 E-value=3.7 Score=50.25 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=115.4
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeeccccc------CeEEEEEc----------------CCCCceEEEEecCCC
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFS----------------HPNKQLCVITCGDDK 495 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~------~V~~v~~s----------------~d~~~~~l~s~s~d~ 495 (1120)
+..|..++.++.|.-.|.++|+.+-.... ..... .-..+++- ..+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 55677777788888888888886643211 11000 01112221 1233 477788899
Q ss_pred cEEEEECCCCceeEEeeccccCeE-------------EEeeccCCCceEEEEEec----------CCeEEEEecCCCCCc
Q 001224 496 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR 552 (1120)
Q Consensus 496 ~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 552 (1120)
.+.-.|.++|+.+..+.. .+.|. .+.-.+--.+..++.|+. +|.|+-+|..+++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999877642 22221 000000001135555542 588999999999988
Q ss_pred eeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE------------------eCCCeEEEEECCCCce
Q 001224 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQL 614 (1120)
Q Consensus 553 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~ 614 (1120)
..+.......... .+.|. .+.......-...+++++...++.+ ...+.|.-.|.+||+.
T Consensus 350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 8765321111100 01121 1211111111223444443333221 1245677889999998
Q ss_pred eEEEecCCCC-------CCcCeEEEcC-CCC---EEEEEECCCcEEEEEccCcc
Q 001224 615 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 615 ~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~ 657 (1120)
...++...|. ....-+.+.. +|+ .++.++.+|.+.++|..+++
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 8877653221 0011122322 553 78999999999999999994
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.40 E-value=1.3 Score=48.84 Aligned_cols=243 Identities=14% Similarity=0.126 Sum_probs=119.7
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcCCCce---eeee----cCCCCCeEEEEEecC---CCcEEEEEeCC--------
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 887 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d-------- 887 (1120)
..++|+|.|||+.+++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999888876699999999 33333 2222 223456899999992 24444433321
Q ss_pred CcEEEEEeecc-------e-eeEeecc---cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc-CCCC
Q 001224 888 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRT 955 (1120)
Q Consensus 888 g~v~vwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~~~~ 955 (1120)
..|.-|....+ + ++..+.. ....-..|+|.|||.+.++.+..+.- -...........++... .+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GGGCSTTSSTTEEEEEETTSSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--ccccccccccceEEEecccCcC
Confidence 23444444432 1 1112222 12234569999999877777654430 00000000011111111 1110
Q ss_pred ------------C------CCCCCcEEEEccC-CcEEEE--EeCCeEEEEEcCCceee----------------------
Q 001224 956 ------------P------TAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV---------------------- 992 (1120)
Q Consensus 956 ------------~------~~~~i~~~~fspd-g~~la~--~~d~~v~i~d~~~~~~~---------------------- 992 (1120)
. .......++|.|. |.+.++ +.+..=.|..+..|.-.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0 0013467899999 877776 44433233223222110
Q ss_pred -----eccccCCCCCCeeEEEECC-------CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE
Q 001224 993 -----KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus 993 -----~~~~~~~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~ 1060 (1120)
..+.. .+...+..+.|-. .|.++++.-..+.|....+.++..+.... .++ . .....++.++
T Consensus 240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~v~ 312 (331)
T PF07995_consen 240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRDVA 312 (331)
T ss_dssp TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEEEE
T ss_pred CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceEEE
Confidence 00111 1345677777754 45566666556678888876553332211 111 1 1112466899
Q ss_pred ecCCCCCEEEEEeCCCcEE
Q 001224 1061 AHPQEPNEFALGLSDGGVH 1079 (1120)
Q Consensus 1061 ~~p~d~~~l~s~~~Dg~v~ 1079 (1120)
+.| ||.+.++.+.+|.|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 688888888888874
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.33 E-value=0.21 Score=43.52 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=47.4
Q ss_pred eEEEEE---cCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEec
Q 001224 474 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 546 (1120)
Q Consensus 474 V~~v~~---s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 546 (1120)
|++|++ ..||.. -|+.|+.|..||+|+ ..+.+..+. ..+.|.+++-... ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeC
Confidence 455554 445555 799999999999997 346667776 4566777774332 46888888999988864
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.32 E-value=0.31 Score=57.94 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=115.3
Q ss_pred cEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEeecce--eeEeecccccceEEEE
Q 001224 846 KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLA 915 (1120)
Q Consensus 846 ~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~--~~~~l~~h~~~V~~l~ 915 (1120)
.+..||..+.+-. ..+..... -.+++. - ++.++++|+.+ ..+..||..+++ .+..+.........+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-
Confidence 4667777654322 22221111 122333 3 67788888854 247788877653 222232222222222
Q ss_pred EccCCCEEEEEeCCC-----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC-----------
Q 001224 916 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------- 978 (1120)
Q Consensus 916 ~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d----------- 978 (1120)
.-+|+..+.||.++ ++..||..+.+-. .+....... .. .++ ..-+|+..+.| .+
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~---~~~~mp~~r---~~-~~~-~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK---MLPDMPIAL---SS-YGM-CVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEE---ECCCCCccc---cc-ccE-EEECCEEEEEeCCCccccccccccc
Confidence 23677888888764 3778888764321 111111110 01 111 22356666664 22
Q ss_pred ------------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC------CcEEEEEcCC-cceeeee
Q 001224 979 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1039 (1120)
Q Consensus 979 ------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------g~v~iwd~~~-~~~~~~~ 1039 (1120)
..+..||..+.+-...-... ......-+..-+|+..+.|+.+ ..|..||..+ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 24778888776543222111 1111111223367777777654 2467888887 4443211
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCCCC
Q 001224 1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVDNGS 1100 (1120)
Q Consensus 1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg--~v~vW~~~~~~~~~~~~~p~~~~~ 1100 (1120)
. ++.. .....++-. ++.+.++|+.|| ++..+|+.+.+ |..-.|--..+
T Consensus 498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence 1 2211 111123333 578999999998 77788887766 88777654443
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.8 Score=47.13 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=118.4
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
+-...+.++.|+|+.+.|++........|+=. .+|.++....-. .-.....+.+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~--g~~DpE~Ieyig 138 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLT--GFSDPETIEYIG 138 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEeccc--ccCChhHeEEec
Confidence 34556999999999999999888766555421 334433322111 244566788888
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeee----------ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce---e
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMAT----------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V 900 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~----------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~ 900 (1120)
+|+++++-- ++.+.++.+.....+.. ..........++|+| ....|..+-+-.=+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887776 78888887765432211 111245678899999 55555556666677777765332 1
Q ss_pred eEeecccc-------cceEEEEEccC-CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCC---CCCCCcEEEEccC
Q 001224 901 KSKLKGHS-------KRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP---TAQSDTRVQFHQD 969 (1120)
Q Consensus 901 ~~~l~~h~-------~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~fspd 969 (1120)
++....+. ..|.++.|.+. +.+|+-+.+++.+.-.|....-. ..+....|..+ .......++..++
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECCC
Confidence 11112222 34677888754 56777777888887777765432 12222222221 1123467788888
Q ss_pred CcEEEEEeCCeE
Q 001224 970 QIHFLVVHETQL 981 (1120)
Q Consensus 970 g~~la~~~d~~v 981 (1120)
|.+.+++.-+-.
T Consensus 295 g~lYIvSEPnlf 306 (316)
T COG3204 295 GNLYIVSEPNLF 306 (316)
T ss_pred CCEEEEecCCcc
Confidence 876666544433
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.24 E-value=0.52 Score=55.88 Aligned_cols=234 Identities=9% Similarity=0.091 Sum_probs=129.4
Q ss_pred cCCCEEEEEe-C------CcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCC-C-----cEEEEEeecc
Q 001224 834 KNDSYVMSAS-G------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD 898 (1120)
Q Consensus 834 ~d~~~l~~~s-d------g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d-g-----~v~vwd~~~~ 898 (1120)
..+..+++|+ + ..+..+|..++.-. ..+. ....-.++++. ++.+.++|+.| | .+..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3455666665 4 34888888765332 2232 22234455555 56888999988 3 5677887764
Q ss_pred e--eeEeecccccceEEEEEccCCCEEEEEeCCCC-----EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224 899 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 971 (1120)
Q Consensus 899 ~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~ 971 (1120)
+ .+..+...........+ +|...|.||.||. |-.||..+.+-.....+... .-..-+..-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 3 33333333332222222 6888899999974 66777766432211111110 111223334666
Q ss_pred EEEEE-eC------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc-----EEEEEcCCcceeeee
Q 001224 972 HFLVV-HE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRI 1039 (1120)
Q Consensus 972 ~la~~-~d------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~iwd~~~~~~~~~~ 1039 (1120)
..++| .+ ..+..||..++.....-....-... ..++ .-++...+.|+.|+. |..||..+.+-...-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 66663 23 3688999888765443322111111 1122 336788888887763 788888887665431
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCC
Q 001224 1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1095 (1120)
Q Consensus 1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~p 1095 (1120)
. .+.. .....++-. ++.+.++|+.|| +|..||+.+.+ |....+
T Consensus 508 ~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 P----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred c----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1 1111 111122222 578888998887 67778777755 776655
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.23 E-value=0.65 Score=49.60 Aligned_cols=159 Identities=9% Similarity=0.026 Sum_probs=79.5
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224 863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 942 (1120)
Q Consensus 863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~ 942 (1120)
.-.+.+..+..++ |+++++++.......-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+......
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3456788888888 89999887654444566643211111222345789999999998776644 788787766221111
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccc-cCCCCCCeeEEEECCCCcEEEEEEc
Q 001224 943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
.-.... . ........+..++|.+++...|++..|.+. ...+.|+--..-. ...-...++.|.|.++.+-++.| .
T Consensus 220 ~w~~~~--~-~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 220 TWSEPI--I-PIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EE---B----TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccccc--C-CcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 000000 0 001111347899999999999988887553 3444443322211 11225678899998776666655 6
Q ss_pred CCcEEEE
Q 001224 1022 DATVCVF 1028 (1120)
Q Consensus 1022 Dg~v~iw 1028 (1120)
+|.+--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877554
No 396
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.22 E-value=0.0091 Score=40.90 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=32.8
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 856 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
+....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 44566677888999999999 778999999999999996
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.21 E-value=0.79 Score=48.21 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=89.4
Q ss_pred CCccEEEEccCCCEEEEEe--CCc--EEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-eecce
Q 001224 825 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE 899 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-~~~~~ 899 (1120)
..+.+.++++|++.+|... ++. ++++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 544 5555443 3333322 233688889999 677777777677777764 23332
Q ss_pred ee-Eeecc--cccceEEEEEccCCCEEEEEe---CCCCEEEEECCCcccccceeeeccCC-CCCCCCCCcEEEEccCCcE
Q 001224 900 VK-SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 900 ~~-~~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fspdg~~ 972 (1120)
.. ..+.. -...|+++.+||||..+|... .++.|.|=-+..........+..... .......++.+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 21 11211 112899999999999887655 35667766655432221111111111 1111247899999999998
Q ss_pred EEEE
Q 001224 973 FLVV 976 (1120)
Q Consensus 973 la~~ 976 (1120)
++.+
T Consensus 180 ~V~~ 183 (253)
T PF10647_consen 180 VVLG 183 (253)
T ss_pred EEEe
Confidence 8874
No 398
>PRK10115 protease 2; Provisional
Probab=96.20 E-value=2.7 Score=51.35 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=100.8
Q ss_pred CCccEEEEccCCCEEEEEeC--C----cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-C-----CcEEE
Q 001224 825 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQI 892 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sd--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-d-----g~v~v 892 (1120)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+.... + ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998763 3 48999998876432221111 14699999 6655544433 2 36777
Q ss_pred EEeecc--eeeEeecccccceE-EEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224 893 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 966 (1120)
Q Consensus 893 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 966 (1120)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+|+...........+....+ ....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence 888776 33334443333333 3344558887664333 4568888854321111111111111 112222
Q ss_pred ccCCcEEEEEeC----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 967 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 967 spdg~~la~~~d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
+..+.+++.... ..|...++........+....-...|..+.++ .+.++++...+|.-+++-+.
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333321 23444444421112223322113468888887 34566667777776555543
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.045 Score=65.09 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=78.4
Q ss_pred EEEccCCCEEEEEe-CCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224 830 FALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 907 (1120)
Q Consensus 830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 907 (1120)
++..-.+-+++.|+ .|.+-..|+...-. ...-..-.++|++++|+. +|++++.|-.+|.|.+||+..++.++.+..|
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 33333556788887 57888888765311 111122356899999999 9999999999999999999999999999888
Q ss_pred ccceEEEEE---ccCCCEEEEEeCCCCEEEEECCC
Q 001224 908 SKRITGLAF---SHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 908 ~~~V~~l~~---s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
..+.+++-+ ..++..+.++...|. +|.+.-
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 877776654 355667888877775 676543
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.17 E-value=2.3 Score=46.88 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEE-ecCCCC-CCcCeEEEcCCCCEEEEEECCCcEE
Q 001224 592 KNRFLAAGDDFSIKFWDMDSVQLLTSI-DADGGL-PASPRIRFNKDGCLLAVSTNDNGIK 649 (1120)
Q Consensus 592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~ 649 (1120)
+.++++.-..+.|....+..+..+... ..-... ..+..+++.|||.+.++-..+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 445555555678888887654332221 111222 2588999999999988888888764
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.14 E-value=3.1 Score=46.65 Aligned_cols=286 Identities=11% Similarity=0.083 Sum_probs=149.5
Q ss_pred CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-----CCCEEEEEe
Q 001224 769 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS 843 (1120)
Q Consensus 769 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-----d~~~l~~~s 843 (1120)
...|++|+..|.++||+.....+.+....+.. .-..+|..+..-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEec
Confidence 35689999999999998744433332221111 0234444444321 334566655
Q ss_pred CCcEEEEEcCC--Cc-------eeeeecCCC--CCeEEEEEecCC----CcEEEEEeCCCcEEEEEeecceeeEeecccc
Q 001224 844 GGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQD----NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 908 (1120)
Q Consensus 844 dg~i~vwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~d----~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 908 (1120)
-..+.||.+.. +. .+..+..|. .....++.-|-+ ..+|.+-+-||.+.+|+-+.......+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 67777777621 11 111111222 122333333322 36888899999999999766554444443 2
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc----------------ee---eeccCCCCCCCCCCcEEEEccC
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN----------------RF---LQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~----------------~~---~~~~~~~~~~~~~i~~~~fspd 969 (1120)
---..++|.+....+++++.+..+.-|....-..... .. -...-|.. .-.|..+.++..
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~--~l~i~v~~~~~~ 252 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ--ALDIQVVRFSSS 252 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce--eEEEEEEEcCCC
Confidence 2234578888888999999998888887532100000 00 00000000 012233333334
Q ss_pred CcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCe--eEEEECCCCc---EEEEEEcCCcEEEEEcCCcceeeeeCCCcc
Q 001224 970 QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPI--THATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus 970 g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v--~~l~~s~dg~---~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
...+++-.+..+.+.+. +|........+...... ..+....++. .++.++.++++.||.=.+..--+++.
T Consensus 253 ~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~---- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP---- 327 (418)
T ss_pred CceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC----
Confidence 44455545666666665 34444433332211111 1111112222 47888999999999844433333322
Q ss_pred cCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 001224 1045 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus 1045 ~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1090 (1120)
. .+| .+.++..++-...|++-+.+|.+.+-=+-+.-...
T Consensus 328 --~----~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 328 --H----VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred --C----CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 1 112 22333333345789999999999998887765333
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.02 E-value=0.13 Score=57.63 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=90.8
Q ss_pred CCeEEEEEecCCCcEEE-EEe--CCCcEEEEEeecceeeEeecccccceEEEEEccC----CCEEEEEeCCCCEEEEECC
Q 001224 866 PAATFLAFHPQDNNIIA-IGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 866 ~~i~~l~~sp~d~~~la-sg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~v~iWd~~ 938 (1120)
.++..++|. ||+.++ +.- .+|.+++=| .+.+ |....|.++.|+|- ...|...-....|.||.+.
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 467889997 454443 322 233333322 1223 33455899999985 3345556677889999987
Q ss_pred Ccccccceee--eccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE
Q 001224 939 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus 939 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1015 (1120)
.......+.+ +.-.-..+.+.-...+.|+|....|++ .....-.++++......-.... ...+.|.|.+|.+||+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 4322222222 221111111123357899999999988 4444434555543322222122 23778999999999998
Q ss_pred EEEEEc-CCcEEEEEcCCcc
Q 001224 1016 VYACFL-DATVCVFSAANLK 1034 (1120)
Q Consensus 1016 l~s~~~-Dg~v~iwd~~~~~ 1034 (1120)
|+++-. .=.-+|||-....
T Consensus 170 LVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred EEEEeCCeEEEEEecCchhh
Confidence 776642 3347889865543
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.95 E-value=1.5 Score=49.20 Aligned_cols=197 Identities=10% Similarity=0.089 Sum_probs=106.3
Q ss_pred CcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcc--
Q 001224 720 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA-- 797 (1120)
Q Consensus 720 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~-- 797 (1120)
...+.+-+.||.+.+|+-+..........+.+| ..+.|.+....+++++++..+.-|+.+.-....+...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP--------gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP--------GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC--------cCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 577888999999999997754322222222222 2578888888899999998999888753211111100
Q ss_pred --------ccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeE
Q 001224 798 --------TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 869 (1120)
Q Consensus 798 --------~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~ 869 (1120)
....-..-|...-|+. --.+..+.++.....+++-+..++.+.+.. |......+- +....
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~----------~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~ 284 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQ----------ALDIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPS 284 (418)
T ss_pred ccccccccccccccceeEEECCce----------eEEEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEec-CCcee
Confidence 0000111233322221 112333334334445666666677777753 444333332 22222
Q ss_pred EEE-Ee------cCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc---cCCCEEEEEeCCCCEEEEECCC
Q 001224 870 FLA-FH------PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 870 ~l~-~s------p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
|++ |. +..+..+++++.++++.||.= .+++...+....+| ++... .-...|++-+.+|.+.+-=+-|
T Consensus 285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 222 22 111235888999999999963 33444333333333 33332 2345788888899888765555
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.023 Score=55.60 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=72.2
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-cceE
Q 001224 836 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 912 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 912 (1120)
+..+++|. +|.|.+|+.... .....+..-...|.++.-.-+++.+..++..||.||.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44667776 999999988622 22222222233444444444366689999999999999999888888777787 5666
Q ss_pred EEEEccCCCEEEEE--eCCCCEEEEECCC
Q 001224 913 GLAFSHALNVLVSS--GADSQLCVWSSDG 939 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~--s~Dg~v~iWd~~~ 939 (1120)
.+..+..++.|+++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666777777 7777788887765
No 405
>PHA02713 hypothetical protein; Provisional
Probab=95.86 E-value=0.37 Score=57.29 Aligned_cols=188 Identities=11% Similarity=0.087 Sum_probs=97.4
Q ss_pred cCCCEEEEEe-C------CcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecc-
Q 001224 834 KNDSYVMSAS-G------GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD- 898 (1120)
Q Consensus 834 ~d~~~l~~~s-d------g~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~- 898 (1120)
-++...+.|+ + ..+..||..+..- +..+....... +++. - ++++.+.|+.++ .+..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3666666665 3 2377888776532 11121111112 2222 2 788888888764 4788998754
Q ss_pred -eeeEeecccccceEEEEEccCCCEEEEEeCCC-----------------------CEEEEECCCcccccceeeeccCCC
Q 001224 899 -EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR 954 (1120)
Q Consensus 899 -~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~v~iWd~~~~~~~~~~~~~~~~~~ 954 (1120)
..+..+.........++ -+|+..+.||.++ .+..||..+.+-.....+. ..
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~- 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TG- 453 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--cc-
Confidence 33333332222222222 2677888887653 3667777664321111111 11
Q ss_pred CCCCCCCcEEEEccCCcEEEEE-eC------CeEEEEEcCC-ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC--c
Q 001224 955 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1024 (1120)
Q Consensus 955 ~~~~~~i~~~~fspdg~~la~~-~d------~~v~i~d~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg--~ 1024 (1120)
.....+..-+|+..++| .+ ..+..||..+ .+-...-...........+.+ +|+..++|+.|| .
T Consensus 454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 11111223345555554 32 2467899887 443322222122222333333 788889999888 7
Q ss_pred EEEEEcCCccee
Q 001224 1025 VCVFSAANLKLR 1036 (1120)
Q Consensus 1025 v~iwd~~~~~~~ 1036 (1120)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 788887776654
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.84 E-value=2.4 Score=43.75 Aligned_cols=186 Identities=9% Similarity=0.117 Sum_probs=112.9
Q ss_pred CccEEEEccCCCEEEEEe-C--CcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 826 AVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
-...+.|..+|.++-+.+ - ..|+.+|+.+++......-... --..++.. ++++....-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345678877777776665 3 4699999999987765442221 22344554 4566666778999999999999888
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 980 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~ 980 (1120)
.++.-. +.=+.++ .|++.|+..+....+.++|.++.+.... ++......+ ...+.-+-+- +|...|-. ....
T Consensus 124 ~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGRP-VSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTEE----EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCCe
Confidence 888643 5567777 4677777766677799999877554332 222222111 1234455554 56555544 6678
Q ss_pred EEEEEcCCceeeeccccC----------CC---CCCeeEEEECCCCcEEEEEE
Q 001224 981 LAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus 981 v~i~d~~~~~~~~~~~~~----------~h---~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
|...|..+|++...+... .+ ..-...||+.|+.+.|...+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888899999887654211 01 34578999988766555444
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.81 E-value=6.7 Score=47.66 Aligned_cols=112 Identities=11% Similarity=-0.003 Sum_probs=74.1
Q ss_pred EEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEE--EcCCcceeeeeC
Q 001224 963 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF--SAANLKLRCRIN 1040 (1120)
Q Consensus 963 ~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iw--d~~~~~~~~~~~ 1040 (1120)
-.+..|-..++.+|....+++||+...+.++......-...|+.+++ .+..+++|...-.|..+ +-...+++.-..
T Consensus 938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 34566777788888889999999988887777665444667888887 56778888765555544 444444443222
Q ss_pred CCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1041 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1041 ~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+..| -+++++.+. |-..++.+..=|.+.+-++...-
T Consensus 1016 --D~~p-------R~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 --DPVP-------RHVTALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred --CCcc-------ceeeEEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 1122 222244444 46789999988999888876543
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.78 E-value=0.56 Score=49.33 Aligned_cols=150 Identities=16% Similarity=0.058 Sum_probs=88.5
Q ss_pred CeEEEEEecCCCcEEEEEe-CCCcEEEEEeecceeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEE-CCCcccc
Q 001224 867 AATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEKQ 943 (1120)
Q Consensus 867 ~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd-~~~~~~~ 943 (1120)
.+.+.++++ ++..+|... .++.-.+|-...+.....+ .+ ..++.-.|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 676665544 3333344433333333332 33 3688889999987777777677777774 2232221
Q ss_pred cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcC---Cc--eee-ecccc-CCCCCCeeEEEECCC
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFSCD 1012 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~----d~~v~i~d~~---~~--~~~-~~~~~-~~h~~~v~~l~~s~d 1012 (1120)
...+...... ..|..+.+||||..+|.-. ++.|.+--+. .+ ..+ ..... ......+.++.|.++
T Consensus 102 -~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 -PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred -eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1111111110 1689999999999999842 5677766543 22 011 00111 122568999999999
Q ss_pred CcEEEEEEcCCc
Q 001224 1013 SQLVYACFLDAT 1024 (1120)
Q Consensus 1013 g~~l~s~~~Dg~ 1024 (1120)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 998777665443
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.74 E-value=0.024 Score=40.90 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCce
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 399 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~ 399 (1120)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 7999999999999998 5543
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=1.2 Score=45.81 Aligned_cols=170 Identities=7% Similarity=0.046 Sum_probs=112.1
Q ss_pred ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 982 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~ 982 (1120)
+.+-...|.++.|+|+.+.|++......-.||=...|+.....++.... ....+.+..+|+++++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 4455556999999999999999888888888866666665554444432 34678888899888885 778888
Q ss_pred EEEcCCceeeecc-----cc--CCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCC-C--
Q 001224 983 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-S-- 1051 (1120)
Q Consensus 983 i~d~~~~~~~~~~-----~~--~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~-~-- 1051 (1120)
++.+..+..+... .. ..+ +...-.++|.|..+.|..+-+-.-+.||.+..+...-... ....+. .
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 8877665322111 11 122 5567889999999999989888888888776333111111 000110 1
Q ss_pred ---CCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1052 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1052 ---~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
..+. ++.|.+..+.+|+-+.+++.+...+....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0123 67788777788888888888777775543
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.58 E-value=2.3 Score=42.11 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=40.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC
Q 001224 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 635 (1120)
Q Consensus 586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 635 (1120)
++++.+|+..+++-..++|...|..+|+.+..+... +..++|++|-..
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence 345667888888889999999999999999999876 457999999653
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.57 E-value=0.043 Score=39.63 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEEcc
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 456 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~ 456 (1120)
...|.+++|||...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999983
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.45 E-value=0.67 Score=50.82 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=101.2
Q ss_pred CCcEEEEEe-CCCcEEEEEeec----ceeeEeecc---cc----cceEEEEEccCCCEEEEEe--CC----CCEEEEECC
Q 001224 877 DNNIIAIGM-DDSSIQIYNVRV----DEVKSKLKG---HS----KRITGLAFSHALNVLVSSG--AD----SQLCVWSSD 938 (1120)
Q Consensus 877 d~~~lasg~-~dg~v~vwd~~~----~~~~~~l~~---h~----~~V~~l~~s~d~~~l~s~s--~D----g~v~iWd~~ 938 (1120)
+.++|+..+ ..+.|+|+|+.+ -++.+.+.. +. +.-..+-.-|+|+.++|+= .+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 445666555 778999999985 244444432 11 1111223347888888753 22 347777777
Q ss_pred CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe---------------------CCeEEEEEcCCceeeecccc
Q 001224 939 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---------------------ETQLAIFETTKLECVKQWVP 997 (1120)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~---------------------d~~v~i~d~~~~~~~~~~~~ 997 (1120)
+.+... ...........-..+.+.|..+.++++. ..++.+||+.+.+.++++..
T Consensus 166 tf~v~g-----~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 166 TFEVKG-----RWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp T--EEE-----E--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cccccc-----eeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 643321 1111111112346788889888888742 24799999999999999887
Q ss_pred CCCCCCeeEEEECCCC--cE-EEEEEcCCcEEEEEc-CCcceee--eeCCCcccCCCCCCC---------CccceEEEec
Q 001224 998 RESSAPITHATFSCDS--QL-VYACFLDATVCVFSA-ANLKLRC--RINPSAYLPAGVSSS---------NVHPLVIAAH 1062 (1120)
Q Consensus 998 ~~h~~~v~~l~~s~dg--~~-l~s~~~Dg~v~iwd~-~~~~~~~--~~~~~~~~~~g~~~~---------~v~~~~i~~~ 1062 (1120)
......+..|.|..|- .+ ++.+...+.|..|-- +.++-.. .+........+-.-. +-.++.|.-|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 5434467788887653 33 333334445554433 4443221 122111000000000 0123477788
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 001224 1063 PQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1120 (1120)
Q Consensus 1063 p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1120)
.+|..+.++.-.+|.|+.||++.....-..-.-+=+|...+.+.+.+.+..-.-++||
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 8655555677789999999999876211111222344444443333333344444443
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.35 E-value=0.79 Score=45.16 Aligned_cols=89 Identities=9% Similarity=0.116 Sum_probs=65.0
Q ss_pred cEEEEccCCCEEEEEe--CCcEEEEE--cCCCce-----eeeecC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 828 PCFALSKNDSYVMSAS--GGKISLFN--MMTFKT-----MATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 828 ~~l~~s~d~~~l~~~s--dg~i~vwd--~~~~~~-----~~~~~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
..++|+.+.+.+.... +-+|.-|| ..+|.. +..++. .....-.+++.. +|++.++....|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4688888888777665 56777787 445433 222221 111233456666 788888888899999999
Q ss_pred eecceeeEeecccccceEEEEEc
Q 001224 895 VRVDEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 895 ~~~~~~~~~l~~h~~~V~~l~~s 917 (1120)
..+|+.+.++.-....|+++||-
T Consensus 240 p~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEec
Confidence 99999999999899999999996
No 415
>PRK10115 protease 2; Provisional
Probab=95.31 E-value=10 Score=46.48 Aligned_cols=247 Identities=9% Similarity=0.040 Sum_probs=116.4
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
-.+..+.++|||++|+.+...+--.-++ +.+.|..+|..+...+.. .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 4566788999999887765532222222 234455566533322221 114699999998
Q ss_pred EEEEEe-C------CcEEEEEcCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEee--cceeeEe
Q 001224 838 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK 903 (1120)
Q Consensus 838 ~l~~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~--~~~~~~~ 903 (1120)
.|+... + ..|+.+++.++ +....+...........+.+.++++++..+. ++.+.+++.. +++....
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 777664 2 25888888887 3333444333333322233336666655443 3578888842 3332222
Q ss_pred ecccccceEEEEEccCCCEEEEEeCC-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E-eCCe
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQ 980 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~-~d~~ 980 (1120)
+..-.+....+. +..+.+++....+ ...+|..+.-........+..... ...+..+.+. +..|+. . .++.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCCE
Confidence 221112222222 2223333333222 233344332211111122221111 1246677776 334444 3 4554
Q ss_pred --EEEEEcCCceeeeccccCCCCCCeeEEEEC--CCCc-EEEEEEc---CCcEEEEEcCCcce
Q 001224 981 --LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLKL 1035 (1120)
Q Consensus 981 --v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~~---Dg~v~iwd~~~~~~ 1035 (1120)
+.+++..++. +..+.... ...+..+.++ +++. ++++.+. -+.++.+|..+++.
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~ 398 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER 398 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence 5555554333 23222111 2223334455 4444 4444432 36799999988753
No 416
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.20 E-value=0.82 Score=54.24 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=104.8
Q ss_pred ccEEEEccCCCEEEEEe-C-C-----cEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEE
Q 001224 827 VPCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQI 892 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s-d-g-----~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~v 892 (1120)
-.++++. ++...++|+ | | ++..||..+.+-. ..+....... +++.. +|.+.|+|+.|| +|..
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEE
Confidence 3344443 446666666 6 3 4778887765422 2222222212 22222 788999999997 4677
Q ss_pred EEeecce--eeEeecccccceEEEEEccCCCEEEEEeCCC------CEEEEECCCcccccceeeeccCCCCCCCCCCcEE
Q 001224 893 YNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 964 (1120)
Q Consensus 893 wd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 964 (1120)
||..+.+ .+..+.........+.+ +|...+.||.|+ ++..||..+++-.....+...... ..+
T Consensus 401 YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~ 471 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGV 471 (571)
T ss_pred ecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceE
Confidence 7776643 33333222222222233 678888888665 467888877654333333333221 223
Q ss_pred EEccCCcEEEE-EeCC-----eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCc
Q 001224 965 QFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANL 1033 (1120)
Q Consensus 965 ~fspdg~~la~-~~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~ 1033 (1120)
+ .-++...++ |.|+ +|..||..+.+....-........+....+ +++..++|+.|| +|..||..+.
T Consensus 472 a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 472 A-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred E-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 3 335555555 4444 478899888766544222222223322333 677778888775 5777776666
Q ss_pred cee
Q 001224 1034 KLR 1036 (1120)
Q Consensus 1034 ~~~ 1036 (1120)
+-.
T Consensus 549 ~W~ 551 (571)
T KOG4441|consen 549 TWT 551 (571)
T ss_pred cee
Confidence 554
No 417
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.19 E-value=11 Score=46.02 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=64.6
Q ss_pred EEEccCCCEEEEEeCCcEEEEEcCCCceeeeec--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeecc
Q 001224 830 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG 906 (1120)
Q Consensus 830 l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~ 906 (1120)
.|+.|...++.+|-...+++||+...+.++... .....|+.+.+. +..+++|+..-.|.++..+. +..+..+.+
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 456677778888888999999998777665532 234567777774 45677777666666544432 223333432
Q ss_pred --cccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 907 --HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 907 --h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
-..-|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22336665554 44567777666666555543
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.09 E-value=5.3 Score=48.99 Aligned_cols=210 Identities=13% Similarity=0.124 Sum_probs=114.4
Q ss_pred EEEEEeCCCcEEEEEeecceeeEeecccccc--------eEEEEEc----------------cCCCEEEEEeCCCCEEEE
Q 001224 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCVW 935 (1120)
Q Consensus 880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~l~s~s~Dg~v~iW 935 (1120)
.|..++.++.|.-.|..+|+.+-++...... ...+++. .++..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5555677888888888888877666432210 1123332 134578888899999999
Q ss_pred ECCCccccccee------eeccCCCCCCCCCCcEEEEcc---CCcEEEEEe----------CCeEEEEEcCCceeeeccc
Q 001224 936 SSDGWEKQKNRF------LQIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQWV 996 (1120)
Q Consensus 936 d~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~fsp---dg~~la~~~----------d~~v~i~d~~~~~~~~~~~ 996 (1120)
|.++|+.....- ++...+... ..-..+.-+| ++..++.+. +|.|+-+|+.+|+.+-.+.
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~--~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTP--PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCC--CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999887542110 110000000 0000111122 343333221 4789999999999876654
Q ss_pred cCC--------------C-CCCe-eEEEECCCCcEEEEEE------------------cCCcEEEEEcCCcceeeeeCCC
Q 001224 997 PRE--------------S-SAPI-THATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus 997 ~~~--------------h-~~~v-~~l~~s~dg~~l~s~~------------------~Dg~v~iwd~~~~~~~~~~~~~ 1042 (1120)
... + ...+ ..+++.++..+++.+. ..+.|.-.|++||+.+-.++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 310 0 0111 2345555544444322 1356777789999998777621
Q ss_pred cccCCCCCCCCccceEEEecCCCCC---EEEEEeCCCcEEEEecCCCCCCCCC
Q 001224 1043 AYLPAGVSSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFEPLESEGKWGV 1092 (1120)
Q Consensus 1043 ~~~~~g~~~~~v~~~~i~~~p~d~~---~l~s~~~Dg~v~vW~~~~~~~~~~~ 1092 (1120)
.+-.-.. +..-.++-+.+...+++ .++.++.+|.+++.|-.+|+..|..
T Consensus 434 ~hD~WD~-D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDM-DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccc-cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 1000000 01011222223221453 7999999999999999999977764
No 419
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=95.02 E-value=0.055 Score=50.17 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=56.9
Q ss_pred CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224 65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1120)
Q Consensus 65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1120)
..++.. ++|+++-+.|||++..|...+|..++.+.-.-+...+.+.++.|+.+....++.+++....+
T Consensus 23 k~EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~ 90 (133)
T cd08044 23 KYELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLF 90 (133)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHH
Confidence 446666 99999999999999999999999999977666666678899999999888888776665544
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.94 E-value=4.4 Score=49.18 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCCCccEEEEccCCCEEEEEeCCcEEEEEcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
....|..+.++++|++++..+...|.|..+-. +.....+.+....|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 45678999999999999998877777777642 111122332233343333332 222221
Q ss_pred EeecccccceEEEEEccC---CCEEEEEeCCCCEEEEECCC
Q 001224 902 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123445777888876 47888888899999999865
No 421
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=94.90 E-value=0.057 Score=50.68 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=50.5
Q ss_pred cccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224 66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1120)
Q Consensus 66 ~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1120)
.++.. ++|+|+-+.||+|+..|+.++|..++.+.-.-+.....+.+++|..+....++...+....+
T Consensus 35 ~EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~ 101 (142)
T PF04494_consen 35 PELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLF 101 (142)
T ss_dssp HHHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHH
Confidence 35666 99999999999999999999999999987776666677888888877776666644444333
No 422
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=0.083 Score=51.86 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=60.8
Q ss_pred EEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE-EEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224 380 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSPDGSLFGVAYSRHIVQIYSYHGG 458 (1120)
Q Consensus 380 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~las~~~dg~v~iwd~~~~ 458 (1120)
+++|+.+|.|.+|++........ ....-...|.+ |.--.++.+..+++.||.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 88999999999999862111110 01111122222 333346678889999999999999988
Q ss_pred ceeeeeeeecccc-cCeEEEEEcCCCCceEEEEe--cCCCcEEEEECC
Q 001224 459 DEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITC--GDDKTIKVWDAT 503 (1120)
Q Consensus 459 ~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~--s~d~~i~vwd~~ 503 (1120)
+.+. ....|. .++.....+..++ +++.+ |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 7665 233455 4444444444444 34444 666666666654
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.61 E-value=11 Score=43.14 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=83.4
Q ss_pred cCeEEEEEcCCCCceEEEEec--CCCcEEEEECCCCceeEEeeccccCeEEEeeccCC--CceEEEEEecCCeEEEEecC
Q 001224 472 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD 547 (1120)
Q Consensus 472 ~~V~~v~~s~d~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~ 547 (1120)
.+|..++|. ||++ +++|.- ..|.+++=| ...+..| ..|..++|.|.. +...+.+....+.|.+|-+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 378999995 7776 455542 222222222 2223333 457888887642 22356677778999999875
Q ss_pred CCCCc--eeeeCCCCce-eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEEecCC
Q 001224 548 NLGSR--VDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADG 622 (1120)
Q Consensus 548 ~~~~~--~~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~ 622 (1120)
..... .-+......+ ..+..-|+| +.|+|....|++-.....=.++++... +....++..
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 32111 0000000000 011112222 457777776666554444345555433 333334333
Q ss_pred CCCCcCeEEEcCCCCEEEEEECC-CcEEEEEc
Q 001224 623 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT 653 (1120)
Q Consensus 623 ~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~ 653 (1120)
+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 359999999999988877543 24567874
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.47 E-value=4.5 Score=44.63 Aligned_cols=191 Identities=14% Similarity=0.176 Sum_probs=94.0
Q ss_pred EEEEccCCCEEEEEe---C----CcEEEEEcCCCceeeeecCCCC---CeEEEEEecCCCcEEEEEe-------------
Q 001224 829 CFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM------------- 885 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s---d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~------------- 885 (1120)
.+..-|+|+.++++- + |.+.+.|-++.+.......... --..+-+.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 344557898888752 2 4588999888887776654322 245566777 666666653
Q ss_pred -------CCCcEEEEEeecceeeEeecccc--cceEEEEEccC--CCE-EEEEeCCCCEEEE-ECCCcccccceeeeccC
Q 001224 886 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVW-SSDGWEKQKNRFLQIPT 952 (1120)
Q Consensus 886 -------~dg~v~vwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~v~iW-d~~~~~~~~~~~~~~~~ 952 (1120)
...++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-..+|..| .-+.++-.....+....
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 13579999999999998886433 23556777644 333 3333334444444 33444433344444432
Q ss_pred CCC-----C--------CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc---eeeeccccCC--------------C
Q 001224 953 GRT-----P--------TAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRE--------------S 1000 (1120)
Q Consensus 953 ~~~-----~--------~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~---~~~~~~~~~~--------------h 1000 (1120)
... + ...-|+.+..|.|.++|.++ ..|.|+.||+..- +++.+....+ -
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 210 0 02457999999999999985 7999999999652 3333322221 1
Q ss_pred CCCeeEEEECCCCcEEEEEE
Q 001224 1001 SAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus 1001 ~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
.+...-|..|-||++|+..+
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 23346788999999988765
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.42 E-value=8.9 Score=43.09 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=77.9
Q ss_pred CCccEEEEccCCCEEEEEe------------CC-cEEEEEcCC--Cce--eeeecCCCCCeEEEEEecCCCcEEEEEeCC
Q 001224 825 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD 887 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s------------dg-~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 887 (1120)
.....|+|.++|+.+++-. .+ .|.+++-.+ ++. ...+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999887742 23 677776532 322 233433344568899998 77 444 3444
Q ss_pred CcEEEE-Eeec-------ce-eeEeecc----cccceEEEEEccCCCEEEEEeCC-------------------CCEEEE
Q 001224 888 SSIQIY-NVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVW 935 (1120)
Q Consensus 888 g~v~vw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------g~v~iW 935 (1120)
.|..| |... .+ ++..+.. +......++|.|||.+.++.+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34433 4321 11 1222322 23447789999999887765521 334444
Q ss_pred ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 936 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
+.++++. .. ...+. .....++|+++|+++++
T Consensus 170 ~pdg~~~---e~--~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 170 NPDGGKL---RV--VAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ecCCCeE---EE--EecCc----CCCccceECCCCCEEEE
Confidence 4444321 11 11222 23578999999999877
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.39 E-value=7.6 Score=40.58 Aligned_cols=231 Identities=14% Similarity=0.205 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCC----ceeeeeeeecc-----cccCeEEEEEcCCCCc----------eEE
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------LCV 488 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~-----h~~~V~~v~~s~d~~~----------~~l 488 (1120)
.-+.|+|+|.+.+-++....+...+||.... .......++.. .....+.+.|+..... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4578999999988888888899999999711 11111112221 2346777888754331 136
Q ss_pred EEecCCCcEEEEECCCCce-----eEEee-ccccCe-EEEeeccCCCceEEEEEe-cCCeEEEEecCCCCCce--eeeCC
Q 001224 489 ITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYEAP 558 (1120)
Q Consensus 489 ~s~s~d~~i~vwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~~~ 558 (1120)
+.+++||+|.-|...-+.. ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-..... .+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998543222 12222 112333 345554444445666654 47889998755322111 01111
Q ss_pred CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC----
Q 001224 559 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---- 634 (1120)
Q Consensus 559 ~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 634 (1120)
. + -.-+.|-+-..+. ..-.+....-++++..=+.+..-|.|-++|. .|+.++.+...+....-..++..|
T Consensus 184 ~--i-PagyAPFnIqnig--~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 184 A--L-PAGYAPFNVQNLG--GTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred C--C-CCCCCCcceEEEC--CeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 0 0 0011111110000 0001111222334444455666789999998 678888886555555667777765
Q ss_pred --CCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224 635 --DGCLLAVSTNDNGIKILATSDGIRLLRTFEN 665 (1120)
Q Consensus 635 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 665 (1120)
.|.+|+---.||+|..+|..++ +.+-.+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4677887778999999999888 44444433
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=94.34 E-value=10 Score=41.85 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=88.6
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEE-EeecceeeEe-ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224 865 PPAATFLAFHPQDNNIIAIGMDDSSIQIY-NVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 942 (1120)
Q Consensus 865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vw-d~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~ 942 (1120)
...+..+.+.| ++.++++|. .|.+..- + ..++.-.. -..-...++++.+.++++.++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776654 5555432 2 11221111 12334678999999998877654 467554322333321
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEEEc
Q 001224 943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
.......... ....+..+++.+++..++++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111111000 11246789999999888888877665 34444443332221 1113467888888777776655 5
Q ss_pred CCcEEEEE
Q 001224 1022 DATVCVFS 1029 (1120)
Q Consensus 1022 Dg~v~iwd 1029 (1120)
.|.|-.|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887776
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.30 E-value=4.4 Score=41.29 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=125.3
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce
Q 001224 867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 946 (1120)
Q Consensus 867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 946 (1120)
.-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt--- 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT--- 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence 345677788 88888888888888888888888766655555566678888888766654333 3444454443321
Q ss_pred eeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC----------eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE
Q 001224 947 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus 947 ~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~----------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
.......+.. .......|.++|++-.++..| .|++|+.. .....+.|+..|||..-
T Consensus 138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence 2222222222 467888999999998885432 35555543 24456778999999988
Q ss_pred EEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC-CCCCCC
Q 001224 1017 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVP 1093 (1120)
Q Consensus 1017 ~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~ 1093 (1120)
++.-.+..|-..|-.++.. ..+....-+..+ .. .+--+| -+..-++....+.++.+|.+... ..|.+|
T Consensus 204 yaslagnaiaridp~~~~a-ev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 204 YASLAGNAIARIDPFAGHA-EVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred EEeccccceEEcccccCCc-ceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 8777777777777777632 233322222222 11 233344 46777777778888888877765 444444
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.22 E-value=0.039 Score=64.09 Aligned_cols=178 Identities=13% Similarity=0.190 Sum_probs=103.5
Q ss_pred CcEEEEEcC--CCceeee-----ecCCCCCeEEEEE---ecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224 845 GKISLFNMM--TFKTMAT-----FMPPPPAATFLAF---HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 914 (1120)
Q Consensus 845 g~i~vwd~~--~~~~~~~-----~~~~~~~i~~l~~---sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 914 (1120)
|.+.||+++ .|+.... .......+.-+.| .+ +.-++..+..++.|++....+.. ...+.+|+..++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccH
Confidence 678888875 3333222 1222223344444 44 55677788889999988776543 25566688777666
Q ss_pred E-----------EccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-------Cc--EEE
Q 001224 915 A-----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFL 974 (1120)
Q Consensus 915 ~-----------~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-------g~--~la 974 (1120)
+ .||||..+|.++.||.++.|.+.-..+...+|+.....|.. .+-.|..|..+ +. +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 5 48999999999999999999876544444555554444432 12233334332 22 223
Q ss_pred EE--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE------------EEEEEcCCcEEEEEcC
Q 001224 975 VV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL------------VYACFLDATVCVFSAA 1031 (1120)
Q Consensus 975 ~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~------------l~s~~~Dg~v~iwd~~ 1031 (1120)
++ .+..+++|.-...+|...+. ...|..+. -+||+. +++-+-|++|.+|.=.
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 33 34578888887777763322 22333343 333331 3345567888888643
No 430
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.21 E-value=2.2 Score=44.07 Aligned_cols=158 Identities=12% Similarity=0.050 Sum_probs=105.3
Q ss_pred ceEEEEEccCCCEEEEEeCCC--CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224 910 RITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 987 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~ 987 (1120)
-..++.|..+|.++-|.|.-| .|+.+|+.+++......+ .... --..++...|.-+..+-.++...+||..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~-----FgEGit~~~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRY-----FGEGITILGDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT-------EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--Cccc-----cceeEEEECCEEEEEEecCCeEEEEccc
Confidence 345788878888888888776 699999999765432222 2111 1245666666666666689999999999
Q ss_pred CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCc-cceEEEecCCCC
Q 001224 988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV-HPLVIAAHPQEP 1066 (1120)
Q Consensus 988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~i~~~p~d~ 1066 (1120)
+.+.+.++... +.=+.++ .||+.|+.......++++|..+.+....+.... + +..+ ..--+.|. +|
T Consensus 119 tl~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~----~--g~pv~~LNELE~i--~G 185 (264)
T PF05096_consen 119 TLKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD----N--GRPVSNLNELEYI--NG 185 (264)
T ss_dssp TTEEEEEEE-S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE----T--TEE---EEEEEEE--TT
T ss_pred cceEEEEEecC---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE----C--CEECCCcEeEEEE--cC
Confidence 99999988754 4566777 577878777667789999999998888876321 1 1112 11156666 47
Q ss_pred CEEEEEeCCCcEEEEecCCCC
Q 001224 1067 NEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1067 ~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.+.|-.=....|..-|+.+|+
T Consensus 186 ~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-B
T ss_pred EEEEEeCCCCeEEEEeCCCCe
Confidence 788888778888888888888
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.98 E-value=8.1 Score=46.98 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=38.3
Q ss_pred CCcEEEEecCCCceeEeeceeeeccCCCC---cccccccc-cCCCCceEEEEEcCCCCeEEEEECCCeEEE
Q 001224 386 VGDIGLWEVGSRERLVLRNFKVWDLGACS---MPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 452 (1120)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-~~h~~~V~~l~~spdg~~las~~~dg~v~i 452 (1120)
|+.+.+||-..... ...+++..+-.... ..++.... ..-.-.|..|.+||+|++||..|..|.+.+
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 57888888765443 33344332221111 12221111 223457999999999999999998775443
No 432
>PHA03098 kelch-like protein; Provisional
Probab=93.86 E-value=2.1 Score=51.28 Aligned_cols=188 Identities=8% Similarity=-0.006 Sum_probs=92.0
Q ss_pred cCCCEEEEEe-C------CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecce
Q 001224 834 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 899 (1120)
Q Consensus 834 ~d~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~ 899 (1120)
.++..++.|+ + ..+..||..+.+-... +.........+ .- ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VF-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EE-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3455555554 3 2477888776543221 11111122222 23 678888888653 57778876643
Q ss_pred --eeEeecccccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224 900 --VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 971 (1120)
Q Consensus 900 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~ 971 (1120)
....+....... +++ .-+++..+.||.+ ..+..||..+.+-.. +...... ..-.+ +..-+++
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~----r~~~~-~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPIS----HYGGC-AIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCcc----ccCce-EEEECCE
Confidence 222222111111 112 2356777777742 357888887643221 1111100 01122 2334556
Q ss_pred EEEEEe-C--------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCccee
Q 001224 972 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1036 (1120)
Q Consensus 972 ~la~~~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~ 1036 (1120)
..+.|+ + ..+.+||..+++....-...........+.+ +++.++.|+.+ ..|.+||..+.+-.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 555542 1 2388999887754432211111111122222 77777777754 46888888776544
No 433
>PHA03098 kelch-like protein; Provisional
Probab=93.63 E-value=4.1 Score=48.76 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=92.7
Q ss_pred CCcEEEEEeCCC------cEEEEEeecceee--EeecccccceEEEEEccCCCEEEEEeCCC-----CEEEEECCCcccc
Q 001224 877 DNNIIAIGMDDS------SIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 943 (1120)
Q Consensus 877 d~~~lasg~~dg------~v~vwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~ 943 (1120)
++.+++.|+.++ .+..||..+.+-. ..+.........+. -+++..+.||.++ .+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 445555555432 4667776664422 11221111122222 3677778888663 4667887764322
Q ss_pred cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe---C----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~---d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
....+. ... .-.++ ..-+++..+.|+ + ..+..||..+++-...-........ .+ +...+++..
T Consensus 372 ~~~~lp--~~r-----~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~-~~~~~~~iy 441 (534)
T PHA03098 372 EEPPLI--FPR-----YNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC-AIYHDGKIY 441 (534)
T ss_pred eCCCcC--cCC-----ccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce-EEEECCEEE
Confidence 111111 110 11122 233566666542 1 3588999887654332111110111 12 223366776
Q ss_pred EEEEcC--------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEec
Q 001224 1017 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1083 (1120)
Q Consensus 1017 ~s~~~D--------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~ 1083 (1120)
+.|+.+ ..+.+||..+++-...-. ...+.. . .. .+.+ ++.+++.|+.+ +.+.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~--~--~~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNFPRI--N--AS--LCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC--CCcccc--c--ce--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 767643 238889988876543211 001111 1 11 2222 46788888765 46788887
Q ss_pred CCCCCCCCCCC
Q 001224 1084 LESEGKWGVPP 1094 (1120)
Q Consensus 1084 ~~~~~~~~~~~ 1094 (1120)
.+.+ |...+
T Consensus 511 ~~~~--W~~~~ 519 (534)
T PHA03098 511 KTNT--WTLFC 519 (534)
T ss_pred CCCE--EEecC
Confidence 7655 65443
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=93.59 E-value=3 Score=48.76 Aligned_cols=183 Identities=11% Similarity=-0.022 Sum_probs=90.4
Q ss_pred CCCEEEEEe-C-----CcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecc--eeeE
Q 001224 835 NDSYVMSAS-G-----GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVKS 902 (1120)
Q Consensus 835 d~~~l~~~s-d-----g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~--~~~~ 902 (1120)
++..+++|+ + ..+..||..+.+-. ..+....... +++ .- ++.+.++|+.++ .+..||..++ ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 3 24677887764432 2222111112 222 23 778888888643 5778887653 3333
Q ss_pred eecccccceEEEEEccCCCEEEEEeCCC---CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224 903 KLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 979 (1120)
Q Consensus 903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~ 979 (1120)
.+.........+ .-+|+..+.||.++ .+..||..+.+-.....+... .-...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--------r~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--------HYKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--------cccceEEEECCEEEEEC--C
Confidence 333222212222 23677778887654 467788766432111111111 01122224456666665 4
Q ss_pred eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcc
Q 001224 980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1034 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~ 1034 (1120)
.+.+||..+++-...-...........+. -+|+..+.|+.+ ..|.+||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57789887765443221111111222222 377777777754 346666666554
No 435
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.51 E-value=14 Score=40.65 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=91.1
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCc------EEEEEeec--c-----ee--eEeeccccc--------ceEEEEEccCCC
Q 001224 865 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D-----EV--KSKLKGHSK--------RITGLAFSHALN 921 (1120)
Q Consensus 865 ~~~i~~l~~sp~d~~~lasg~~dg~------v~vwd~~~--~-----~~--~~~l~~h~~--------~V~~l~~s~d~~ 921 (1120)
-+.+..+.+.+.++.+++ -+++|. ++.+++.. + +. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999873555554 566666 66555543 1 00 111222222 233788888888
Q ss_pred EEEEEeCC------CCEEEEECCCcccccceeeeccC-------CCCCCCCCCcEEEEccCCcEEEEE------eCC--e
Q 001224 922 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVV------HET--Q 980 (1120)
Q Consensus 922 ~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~fspdg~~la~~------~d~--~ 980 (1120)
++++.=.+ ..|+.++.+ |.......+...- ...........++++|||+.|.++ .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88876666 667777766 3332221111100 112233578999999999955542 232 1
Q ss_pred -------EEE--EEcCC-ceeeeccccCC-------CCCCeeEEEECCCCcEEEEEE-----cCCcEEEEEcC
Q 001224 981 -------LAI--FETTK-LECVKQWVPRE-------SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1031 (1120)
Q Consensus 981 -------v~i--~d~~~-~~~~~~~~~~~-------h~~~v~~l~~s~dg~~l~s~~-----~Dg~v~iwd~~ 1031 (1120)
+++ ||..+ ++....+...- ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 55544 32333333221 357899999999999877422 23456666544
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.45 E-value=1.5 Score=51.40 Aligned_cols=118 Identities=10% Similarity=0.154 Sum_probs=73.3
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE--eecccccceEEEEEc--cCCCEEEEEeCCCCEEEEECCCc-
Q 001224 866 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGW- 940 (1120)
Q Consensus 866 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s--~d~~~l~s~s~Dg~v~iWd~~~~- 940 (1120)
..++-+.-|. -++..++-+....+.|||...+.+.. .+ ...+.|.++.|. |||+.+++.|..+.|.+|.-...
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3444454554 34444444445589999998876332 23 346789999986 78999999999999999964211
Q ss_pred ---ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEc
Q 001224 941 ---EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 986 (1120)
Q Consensus 941 ---~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~ 986 (1120)
.......++...-..-...+|.+..|.++|.+++. ..+.+.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECC
Confidence 11111122222111111247889999999976554 4677888764
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=11 Score=44.25 Aligned_cols=182 Identities=11% Similarity=0.099 Sum_probs=96.5
Q ss_pred cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe--e--cccccceEEEEEccCCC
Q 001224 846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALN 921 (1120)
Q Consensus 846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~ 921 (1120)
.|+||++. |+.+..+.-..+.+..+.|+. +. -|++-..+|+++||++.. +.+.. . ......|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 48888875 566666554455899999996 44 455568999999999763 32222 1 22233455555555664
Q ss_pred EEEEEeCCCCEEEE-ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--EeC--CeEEEEEcCCceee-ecc
Q 001224 922 VLVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE--TQLAIFETTKLECV-KQW 995 (1120)
Q Consensus 922 ~l~s~s~Dg~v~iW-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~d--~~v~i~d~~~~~~~-~~~ 995 (1120)
.+.+ .+|.+.+- +...... ..+...++.. ..-.+...-+++..... .-+ -...++-...+... ..+
T Consensus 141 avlt--~~g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 4333 34444332 3222111 1111111111 11123333333221111 111 00111212111111 111
Q ss_pred ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCC
Q 001224 996 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1041 (1120)
Q Consensus 996 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 1041 (1120)
. .-.+.+..+..||+.++|+-=..+|.|.+-+.+..+..+.+..
T Consensus 213 ~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 213 S--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred C--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1 1146788899999999999999999999999998888887763
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.86 E-value=16 Score=39.29 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=108.2
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-cee-
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV- 900 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~- 900 (1120)
...++.|..+ .-+++|..+ +.+...+.++.-..+. .-.+....+.... ++..++ ++..|.|+. ... |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~--T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYR--TTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEE--ESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEE--eCCCCCCe
Confidence 3556777543 445555554 3333334343322221 1122333444433 344444 344555443 222 221
Q ss_pred eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCe
Q 001224 901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 980 (1120)
Q Consensus 901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~ 980 (1120)
......-.+.+..+..++||++++++.......-||--.. ......... ...|..+.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 1223344577888999999999988876666667774431 111222211 14789999999999888888888
Q ss_pred EEEEE-cCCceeeec-cc-cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224 981 LAIFE-TTKLECVKQ-WV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus 981 v~i~d-~~~~~~~~~-~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
|+.=+ ....+.... .. .....-.+..++|.+++...++|+ .|.+. ...+.|+.=.+-......| .+.+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~-----~n~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVP-----SNLY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSS-----S-----
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCC-----CceE--
Confidence 88776 222222211 11 111234489999999988888665 45444 3555665544433112222 2244
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEE
Q 001224 1058 VIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1058 ~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
.+.|.+ ++.-.+.+.+|.|.=|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 788876 3455555568877654
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=92.82 E-value=18 Score=39.91 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=87.3
Q ss_pred ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224 908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 987 (1120)
Q Consensus 908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~ 987 (1120)
...+.++.+.+++.+++++. .|.+.. ..+.+.. ........ ....+..+.+.+++..++++..|.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~-tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQT-AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCC-eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 45688999999987766554 554432 1111111 11112111 1146789999999998888877766532344
Q ss_pred CceeeeccccC--CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 988 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 988 ~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
.+..-.....+ .....+.++.+.++++.++++ .+|.|. ...+.|+.-..+......+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44332221111 113457889999988866644 577665 34555554333321111111 133 566664
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001224 1066 PNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1066 ~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
++....++..|.|..|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3455556678999888744
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=4.5 Score=39.44 Aligned_cols=173 Identities=11% Similarity=0.061 Sum_probs=93.2
Q ss_pred CCCEEEEEe---CCcEEEEEcCCCceeeeecCCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc
Q 001224 835 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 906 (1120)
Q Consensus 835 d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 906 (1120)
+|.++.+.+ ...|++||+.+++.+..-+-.. ..|+.+ +..+.+..-.+|.-.++|..+.+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccccc
Confidence 445555554 3569999999988876543221 122222 233444456788999999999888777653
Q ss_pred cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001224 907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 985 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d 985 (1120)
.+.=++++- |++.|+.++...+++.-|.++...... ..-..++..- ..+.-+.|- ||...|- -.+..|...+
T Consensus 130 -~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~-v~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 -EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT-VQVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred -CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcce-EEEEECCeec--ccccceeee-ccEEEEeeeeecceEEEc
Confidence 233455544 666677666566676666655333221 1112222110 111222221 3443333 2444555556
Q ss_pred cCCceeeeccccC----------CCCCCeeEEEECCCC-cEEEEE
Q 001224 986 TTKLECVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1019 (1120)
Q Consensus 986 ~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg-~~l~s~ 1019 (1120)
.++|+.+.-+... .|..-...|++.|++ +++++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6666654433221 234456789999987 455555
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.56 E-value=11 Score=37.55 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=84.6
Q ss_pred EEEEEeCCCcEEEEEeec--ceeeEeecccccceEEEEEccCCCEEEEEeCCC------CEEEE-ECCCcccccceeeec
Q 001224 880 IIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVW-SSDGWEKQKNRFLQI 950 (1120)
Q Consensus 880 ~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iW-d~~~~~~~~~~~~~~ 950 (1120)
.|..+.....|.+|++.. .+.+..|..- +.|..+.++..|++|+|-=.+. .+|+| |.+.......+....
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 443445667899999983 4555666544 7899999999999999864322 46665 222211111111101
Q ss_pred cCCC------------------CCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee-eec-----cc---cCCC-CC
Q 001224 951 PTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VKQ-----WV---PRES-SA 1002 (1120)
Q Consensus 951 ~~~~------------------~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~-~~~-----~~---~~~h-~~ 1002 (1120)
..|| .+...++.+++..|-.--|++|.++.+.+|.+..... ... +. ...| .-
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~ 188 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNF 188 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCc
Confidence 1110 0112356788888876667788889999998865544 111 10 0111 22
Q ss_pred CeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224 1003 PITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 1003 ~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
.+..++| .+.|+|..+ +-.++|+.+
T Consensus 189 ~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 189 KPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred eEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 2455555 577888765 566777654
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.50 E-value=3.4 Score=48.60 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC
Q 001224 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 551 (1120)
Q Consensus 473 ~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 551 (1120)
...-+.-|.-++ +.+.-+....+.|||...+.....-. ...+.|.++.|...++++.+++.|..+.|.++.-.....
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555566 34444455679999999887654332 357889999999999999999999999999984321000
Q ss_pred ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224 552 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 609 (1120)
Q Consensus 552 ~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 609 (1120)
... ...-..+..+. +..++..+|....|.++|..++.+ ++.+.|+|-
T Consensus 109 ~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 000 00001222222 223344466667777777644443 356777764
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.30 E-value=0.14 Score=59.76 Aligned_cols=108 Identities=19% Similarity=0.359 Sum_probs=67.4
Q ss_pred ccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEE-----------EecCCCcEEEEEeCCCcEEEEEeec-c-
Q 001224 833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA-----------FHPQDNNIIAIGMDDSSIQIYNVRV-D- 898 (1120)
Q Consensus 833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~-----------~sp~d~~~lasg~~dg~v~vwd~~~-~- 898 (1120)
-++.-++..+. +++|++.++.+... ..+.+|...++.++ +|| ||+.+|+++.||.+++|.+.- |
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeecc
Confidence 34556666666 68888877664332 44555765554433 789 999999999999999987642 2
Q ss_pred ---eeeEeeccccc-ceEEEEEccC-------CC--EEEEE-eCCCCEEEEECCCccc
Q 001224 899 ---EVKSKLKGHSK-RITGLAFSHA-------LN--VLVSS-GADSQLCVWSSDGWEK 942 (1120)
Q Consensus 899 ---~~~~~l~~h~~-~V~~l~~s~d-------~~--~l~s~-s~Dg~v~iWd~~~~~~ 942 (1120)
.|++.++.|.+ +-.|.-+... +. +++++ .....+++|.-..+++
T Consensus 270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 45566777773 3333324322 11 33443 4456689998777554
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.20 E-value=0.021 Score=61.86 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=98.7
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
......+-+.+..++.++.+..+..||-... .... .........++|..++..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq----------------------~~le-----~n~tg~aldm~wDkegdv 88 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ----------------------VILE-----LNPTGKALDMAWDKEGDV 88 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcc----------------------eecc-----cCCchhHhhhhhccccch
Confidence 3344566777777888888877777763211 1111 113445566778777777
Q ss_pred EEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEE
Q 001224 839 VMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 916 (1120)
Q Consensus 839 l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 916 (1120)
+++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++
T Consensus 89 lavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred hhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 76654 68899999976432211111111122278999 8899999999999999998877766666569999999999
Q ss_pred ccCCCEEEEEeCCCCEEEEE
Q 001224 917 SHALNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 917 s~d~~~l~s~s~Dg~v~iWd 936 (1120)
.+.+ +.+.++.|..+.+-.
T Consensus 168 ~lEd-~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 168 TLED-YVILCDCDNTLSVTT 186 (615)
T ss_pred cccc-eeeecCcHHHHHHhh
Confidence 9875 556666666554433
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.13 E-value=5.9 Score=43.91 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=89.7
Q ss_pred CCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC------CceEEEEEecCCeEEEEecCCCCCceee
Q 001224 482 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSRVDY 555 (1120)
Q Consensus 482 d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 555 (1120)
+...+++..|+....++--|++.|+.+..+..|...| +.+.|.. +.+.|+- -.+..|.-.|.+..+.....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEe-ecccceEEecccccCCceee
Confidence 3344466777788889999999999999998777654 4444332 1233443 34555555565543322211
Q ss_pred eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC
Q 001224 556 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 635 (1120)
Q Consensus 556 ~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 635 (1120)
.......+.-.|+..+ .....++++++..|.|++||.-..+....+++-+. .|..+..+.+
T Consensus 554 ~esKdY~tKn~Fss~~-----------------tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~ 614 (776)
T COG5167 554 VESKDYKTKNKFSSGM-----------------TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTAN 614 (776)
T ss_pred eeehhccccccccccc-----------------cccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecC
Confidence 1111111111111111 12235799999999999999755444444444433 6888999999
Q ss_pred CCEEEEEECCCcEEEEEcc
Q 001224 636 GCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 636 ~~~l~~~~~dg~i~iwd~~ 654 (1120)
|+++++.+. ..+.+-|+.
T Consensus 615 Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 615 GKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CcEEEEeec-ceEEEEecc
Confidence 999887775 466666654
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.91 E-value=5.5 Score=44.80 Aligned_cols=148 Identities=10% Similarity=0.105 Sum_probs=77.6
Q ss_pred cceEEEEEccCCCEEEEEe-----------CCC-CEEEEECCCc--ccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 909 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGW--EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s-----------~Dg-~v~iWd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
....+|+|.++|+++++-. ..+ .|.+++-..+ +......+. .+. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EEL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCC----CCccceeEecCC-EEE
Confidence 3456788988888877643 223 5666654332 211111221 111 235789999999 444
Q ss_pred EEeCCeEEEE-EcCCc-------e-eeeccccCC--CCCCeeEEEECCCCcEEEEEEcC-------------------Cc
Q 001224 975 VVHETQLAIF-ETTKL-------E-CVKQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------AT 1024 (1120)
Q Consensus 975 ~~~d~~v~i~-d~~~~-------~-~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~D-------------------g~ 1024 (1120)
+. ...|..| |.... + .+..+.... +......++|.|||.+.++-+.. |.
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 43 3445444 44321 1 112222210 23457889999999876655421 34
Q ss_pred EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224 1025 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus 1025 v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
|.-++.++++.. .+ ..| ..++..++|+| +++++++-..++
T Consensus 166 i~r~~pdg~~~e-~~------a~G----~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLR-VV------AHG----FQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEE-EE------ecC----cCCCccceECC-CCCEEEEccCCC
Confidence 444555544432 11 112 13455799999 588877654333
No 447
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.57 E-value=0.5 Score=33.01 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.2
Q ss_pred CCceEEEEecCCC--eEEEEEeCCCcEEEEecCCC
Q 001224 365 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGSR 397 (1120)
Q Consensus 365 ~~v~~v~~spdg~--~lla~g~~dg~i~iwd~~~~ 397 (1120)
+.|.+++|||... .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998544 57888888899999999853
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=91.41 E-value=8.5 Score=45.04 Aligned_cols=185 Identities=8% Similarity=-0.015 Sum_probs=93.3
Q ss_pred CCcEEEEEeCCC-----cEEEEEeecce--eeEeecccccceEEEEEccCCCEEEEEeCCC--CEEEEECCCccccccee
Q 001224 877 DNNIIAIGMDDS-----SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRF 947 (1120)
Q Consensus 877 d~~~lasg~~dg-----~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~ 947 (1120)
++.++++|+.++ .+..||..+++ .+..+.........+ .-++...+.||.++ ++..||..+++- ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W---~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW---VN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE---EE
Confidence 567777787553 46678876643 222332222222222 23677778887643 577787655321 11
Q ss_pred eeccCCCCCCCCCCcEEEEccCCcEEEEE-eC---CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC
Q 001224 948 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1023 (1120)
Q Consensus 948 ~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1023 (1120)
+.... .+ .....+..-+|+..++| .+ ..+..||..+.+-...-......... ++ ..-+|+..+.| |
T Consensus 346 ~~~l~--~~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 346 MPSLL--KP---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCCC--CC---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---C
Confidence 11111 10 11122233466666664 33 35778888776544322211111111 22 23467666666 4
Q ss_pred cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEecCCCC
Q 001224 1024 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1087 (1120)
Q Consensus 1024 ~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1087 (1120)
.+.+||..+++-...-. .+...... +++.. ++++.+.|+.+ .++..+|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~~~----m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDD----PIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCC----CCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57889988775543211 12111011 23333 47888888865 357788887765
No 449
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=2.2 Score=51.84 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=94.2
Q ss_pred CCCccEEEEccCCCEEEEEe--C-CcEEEEEcCCCceee-----eecCC------CCCeEEEEEecCCCcEEEEEeCCCc
Q 001224 824 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS 889 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~ 889 (1120)
...+..+.+.+|+...++.. + ..|..||+.+...-+ .+..| ..-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788877666554 3 358999987543221 12212 2235678888843345566778999
Q ss_pred EEEEEeecc-eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 890 IQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 890 v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
|+|..+.-. ..+..+. ....+++++|+|-|+.++.|-..|++.-|...-..+. .+..+... ....|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~--e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVE--ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcC--CCcceeEEEEec
Confidence 998876532 2222222 4567899999999999999999999998876542211 11111111 136899999998
Q ss_pred CCcEEEE
Q 001224 969 DQIHFLV 975 (1120)
Q Consensus 969 dg~~la~ 975 (1120)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888877
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.76 E-value=53 Score=41.05 Aligned_cols=174 Identities=11% Similarity=0.150 Sum_probs=104.4
Q ss_pred CCCCccEEEEc---c----CCCEEEEEeCCcEEEEEcCCC---------------ceeeeecC---CCCCeEEEEEecCC
Q 001224 823 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD 877 (1120)
Q Consensus 823 ~~~~v~~l~~s---~----d~~~l~~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d 877 (1120)
...+|..|+|+ . ..++|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46778888887 2 235777777777888772211 11222221 12356678888877
Q ss_pred CcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCC
Q 001224 878 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 957 (1120)
Q Consensus 878 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 957 (1120)
.+.||+-+..|...||++...... +. .. +-+.....|.| +.|.+.-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~----------~~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SN----------LRLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-cc----------eeeccCCCccc-cCCCccc-----------------
Confidence 778888888888888887211100 00 11 11112222333 2222210
Q ss_pred CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC--CcEEEEEEcCCcEEEEEcCCc
Q 001224 958 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 958 ~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++ +..++-. ...|...++.+.
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 133578899998899999999999999998876442333344678999999887 3333332 367888888763
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.60 E-value=34 Score=38.56 Aligned_cols=152 Identities=9% Similarity=0.046 Sum_probs=84.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEE-EEEeeccee--eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc
Q 001224 868 ATFLAFHPQDNNIIAIGMDDSSIQ-IYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 944 (1120)
Q Consensus 868 i~~l~~sp~d~~~lasg~~dg~v~-vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~ 944 (1120)
...+..++ |+.+++.|.. |.+. -||- |.. ...-......++++.|.+++..++.+ .+|.+ +|..+.++.-.
T Consensus 241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcC-CCCEEEEECC-ccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 34456667 7777776653 4433 3432 221 11112234568999999998887765 55654 44444432110
Q ss_pred ceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccc-cCCCCCCeeEEEECCCCcEEEEEEcCC
Q 001224 945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDA 1023 (1120)
Q Consensus 945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1023 (1120)
...+...... .....+..+.|.+++..+++|..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|
T Consensus 315 ~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 315 DFDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred ccceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 0011111100 011357889999999999999888766653 3343322211 11224578899998887777755 578
Q ss_pred cEEEE
Q 001224 1024 TVCVF 1028 (1120)
Q Consensus 1024 ~v~iw 1028 (1120)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77654
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.37 E-value=26 Score=36.85 Aligned_cols=210 Identities=9% Similarity=0.056 Sum_probs=123.1
Q ss_pred CccEEEEccCCCEEEEEe-CCcEEEEEcC------CC-ceeeeecC-----CCCCeEEEEEecCCCc------------E
Q 001224 826 AVPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNN------------I 880 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s-dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~------------~ 880 (1120)
..+.|+++|.+.+-++.. .+...+||.. .. .++.++.. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 457899999987777665 6889999986 11 22333332 234577888875 222 2
Q ss_pred EEEEeCCCcEEEEEeeccee-----eEeec-ccccce-EEEEEccC--CCEEEE-EeCCCCEEEEECCCcccccceeeec
Q 001224 881 IAIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVS-SGADSQLCVWSSDGWEKQKNRFLQI 950 (1120)
Q Consensus 881 lasg~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~ 950 (1120)
++.+++||+|.-|...-+.. ...+. +..+.| ..+++... +.+|.. --..++|.|+|-.-.+.... -..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~--g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP--GSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC--CCc
Confidence 46678999999998532221 12222 112333 35666533 455544 34578899998554221100 000
Q ss_pred cCCCCCCCCCCcEEEEccCCcEEEE-E-------------eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC-----
Q 001224 951 PTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC----- 1011 (1120)
Q Consensus 951 ~~~~~~~~~~i~~~~fspdg~~la~-~-------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~----- 1011 (1120)
.+...+.......+.-- .+++.++ + .-|.|-+||+. |..++.+...+.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 00000100111122111 2333333 2 22579999985 66777676666677788888866
Q ss_pred -CCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 1012 -DSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1012 -dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
.|.+|+----||+|-+||..+++.+..+.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 56777766679999999999999998877
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.13 E-value=13 Score=44.40 Aligned_cols=116 Identities=8% Similarity=0.058 Sum_probs=76.3
Q ss_pred ceEEEEEcC--CCCeEEEEECCCeEEEEEccC-------C----------ceeeeeeeecccccCeEEEEEc--CCCCce
Q 001224 428 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL 486 (1120)
Q Consensus 428 ~V~~l~~sp--dg~~las~~~dg~v~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~d~~~~ 486 (1120)
.|+.|.... +...|+.|..||.|.+|.+++ . ..+++.+.+. -...++++++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 577776655 677899999999999997632 0 0112223333 23478999997 5555
Q ss_pred EEEEecCCCcEEEEECCCC--ceeE-EeeccccCeEEEeeccCC---Cce-EEEEEecCCeEEEEec
Q 001224 487 CVITCGDDKTIKVWDATNG--AKQY-IFEGHEAPVYSVCPHHKE---NIQ-FIFSTALDGKIKAWLY 546 (1120)
Q Consensus 487 ~l~s~s~d~~i~vwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~---~~~-~l~s~~~dg~i~iwd~ 546 (1120)
+||.++....|.||-.... +... .-..|...|.+|+|.... +|. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765442 1111 111256678888887655 233 7778888999988877
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.10 E-value=25 Score=36.18 Aligned_cols=242 Identities=11% Similarity=0.071 Sum_probs=140.5
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
.......++-+|||..-.++. .+.|--.|-.+++....--+....-..+..-| |+..-++-+.. -|.-.|-++.+.
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev- 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV- 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-
Confidence 345566788899998888877 67788888888887666555566677788888 55444432222 455556555442
Q ss_pred Eee----cccccceEEEEEccCCCEEEEEeCC---------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 902 SKL----KGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 902 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~D---------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
.+| +.-........|.++|.+-.++... +.|++|+... | .....++..|
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G-----~gpyGi~atp 198 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------G-----GGPYGICATP 198 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------C-----CCCcceEECC
Confidence 222 2233456778899999888877532 3455555433 2 2457899999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCC
Q 001224 969 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1047 (1120)
Q Consensus 969 dg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 1047 (1120)
||..-+++ .+..|...|..++.........+-...-..+--+|.|+.-++....+.+.-||-.+..-+ ... +|.
T Consensus 199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eyp----LPg 273 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYP----LPG 273 (353)
T ss_pred CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eee----CCC
Confidence 99987774 556666667665522211111121223344555777888787777777888876654422 222 232
Q ss_pred CCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC-CCCCCCCC
Q 001224 1048 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1095 (1120)
Q Consensus 1048 g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~p 1095 (1120)
. +..-+ ++.-.- .+..-.+--..|.|.-+|..+.. ..+..++|
T Consensus 274 s--~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 274 S--KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred C--CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 1 11112 222222 12333333445677777776655 55555555
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.06 E-value=18 Score=36.13 Aligned_cols=156 Identities=13% Similarity=0.192 Sum_probs=84.3
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEE---E
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 894 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vw---d 894 (1120)
....++.++.+..+++.+.+.|.+|++. ..+...+|..- +.|..++++. .|.+|++--.+. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3445555553445455557889999988 34555666644 7799999999 899999864332 56665 2
Q ss_pred ee--cceee-Eeeccc---------------------ccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc--ceee
Q 001224 895 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--NRFL 948 (1120)
Q Consensus 895 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~ 948 (1120)
.. ..+.+ ..+-|| +.++.+++-.|-..-|+.|+ ++++.+|.+....... ...+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 21 11111 122222 23456666666543444444 4569999877643311 1111
Q ss_pred eccCC---CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224 949 QIPTG---RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 987 (1120)
Q Consensus 949 ~~~~~---~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~ 987 (1120)
..... +.. ...+..++| -+.|+|..++..++++.+.
T Consensus 176 DFe~~l~~~~~-~~~p~~v~i--c~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 176 DFERSLIDHID-NFKPTQVAI--CEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred echhhhhheec-CceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence 11100 000 011122222 3567788788888877653
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.86 E-value=1 Score=31.54 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.5
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEEeec
Q 001224 866 PAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 866 ~~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~ 897 (1120)
+.|.++.|||..+ .+|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999999999999999985
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.42 E-value=28 Score=37.37 Aligned_cols=194 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred ccEEEEccCCCEEEEEeCC-------------cEEEEEcCCCceeeeecCC------CCCeEEEEEecCCC----cEEEE
Q 001224 827 VPCFALSKNDSYVMSASGG-------------KISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI 883 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~sdg-------------~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las 883 (1120)
|..+...+++++-+.-+.. +|.+||+.+.+.++++.-. ......+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Q ss_pred EeCC-CcEEEEEeecceeeEeecccc-------------------cceEEEEEcc---CCCEEEEEeCCCCEEEEECCCc
Q 001224 884 GMDD-SSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW 940 (1120)
Q Consensus 884 g~~d-g~v~vwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~~ 940 (1120)
.... +-|.|+|+.+++..+.+..+. +.+.+++.+| |+++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Q ss_pred ccccceeeecc------CCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC----ceeeeccccCCCCCCeeEEEE
Q 001224 941 EKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK----LECVKQWVPRESSAPITHATF 1009 (1120)
Q Consensus 941 ~~~~~~~~~~~------~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~----~~~~~~~~~~~h~~~v~~l~~ 1009 (1120)
-.......... ..-.........++++++|.+..+ ...+.|..|+..+ ........-...-..+.++.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Q ss_pred CC--CCcEEEEEEc
Q 001224 1010 SC--DSQLVYACFL 1021 (1120)
Q Consensus 1010 s~--dg~~l~s~~~ 1021 (1120)
.+ +|.+.+..+.
T Consensus 242 ~~~~~g~L~v~snr 255 (287)
T PF03022_consen 242 DPEGDGYLWVLSNR 255 (287)
T ss_dssp -T--TS-EEEEE-S
T ss_pred ccccCceEEEEECc
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.24 E-value=1.3 Score=30.61 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.7
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCC--CcEEEE
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 392 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iw 392 (1120)
.......-.+.+|||||++|+.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778899999999988888887 777766
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.76 E-value=46 Score=37.46 Aligned_cols=200 Identities=10% Similarity=-0.030 Sum_probs=102.6
Q ss_pred ccCCCEEEEEeCCcEEEEEcCCCceeeeecCCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-c
Q 001224 833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-K 909 (1120)
Q Consensus 833 s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~ 909 (1120)
..+++.++...+|.|.-.|..++..+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+....... -
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 345655555458888888888777554332221 2233333333 565 6668889989999988898887766555 1
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEEEcC
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETT 987 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--d~~v~i~d~~ 987 (1120)
.+..-..-.++ .+..++.|+.+...+..+++.......... .. ..+..-....++..++... ++.+.-+|..
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP---LS--LSIYGSPAIASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc---cc--cccccCceeecceEEEecCCCcceEEEEEcc
Confidence 12222222233 222333566666666666554322111110 00 0111111133344444333 4567777777
Q ss_pred CceeeeccccCC--CCCCeeEEEECCC-----CcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 988 KLECVKQWVPRE--SSAPITHATFSCD-----SQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 988 ~~~~~~~~~~~~--h~~~v~~l~~s~d-----g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+|...-...... -...+........ +.-+..++.++.+...|..+|+.+-+..
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 776655422100 0111100111111 1223566778889999999999998877
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.41 E-value=0.073 Score=57.85 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=88.7
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
.++...+...+....++|.-+|..+++.+-..+.+.+||+.+..... ...-..|.... +.|
T Consensus 65 gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-----------------LE~gg~~s~sl--l~w 125 (615)
T KOG2247|consen 65 GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-----------------LESGGTSSKSL--LAW 125 (615)
T ss_pred cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-----------------HhccCcchHHH--Hhh
Confidence 34444455667788899999998777777888999999997643211 00111233333 789
Q ss_pred cCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 435 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 435 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
++.+..++.+-..|.+.|++..+.+.+. .+..|..++++++|.+.+. .+.++.|..+.+-.
T Consensus 126 sKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 126 SKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred ccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 9999999999999999999998866443 3444999999999999986 77787777665544
No 461
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.99 E-value=69 Score=41.87 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=85.7
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
|...++.|.-+|+|+++=+ +|+.++.||..... |... -..-..+++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5567777888888875322 57888888876543 2210 011233555565556666655
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC------ceeE--Eeecc
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AKQY--IFEGH 514 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~------~~~~--~~~~h 514 (1120)
.++. .|-|+..+..-. ..-..|.+...+++|.- .+.++-+...+.+|++... ++.. .+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133444433111 12346777888899983 4677777777899998754 1112 22332
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
.....+|.++ .+ .|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 3345556553 32 688888899987776654
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.71 E-value=2.6 Score=45.69 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred CCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCcee-eeecCC-CC----CeE-EEEEecCCCcEEEEEeCCCcEEEE-E
Q 001224 823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATFMPP-PP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 894 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~-~~~~~~-~~----~i~-~l~~sp~d~~~lasg~~dg~v~vw-d 894 (1120)
....+..+-..|||+++.+-+..++.++++.+.... +.+-.. .+ .|+ .+..-. ++.-|.++..||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456788899999999999988888999988754332 111111 11 122 222223 66677788899988877 5
Q ss_pred eecce-----eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224 895 VRVDE-----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 895 ~~~~~-----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd 969 (1120)
+..+. .++.++-...+|..+.--.+.+-+++-+..|++.++.....+. .+.... ...+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~----lL~~~~-----~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL----LLFERA-----YQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc----eehhhh-----hcCcceeeeCcc
Confidence 44321 2223333334454444444456678888889888776444221 111111 124678999999
Q ss_pred CcEEEEEeCCeEEEEEcCCceee
Q 001224 970 QIHFLVVHETQLAIFETTKLECV 992 (1120)
Q Consensus 970 g~~la~~~d~~v~i~d~~~~~~~ 992 (1120)
+.++++-..|+++++.+++....
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred cchheeecCCceEEEEecCCCCC
Confidence 99999988899999988765543
No 463
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.53 E-value=5.4 Score=48.81 Aligned_cols=148 Identities=7% Similarity=-0.019 Sum_probs=85.0
Q ss_pred cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-----EEeec------cccCeEEEeeccCCCceEEEEEecCCe
Q 001224 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-----YIFEG------HEAPVYSVCPHHKENIQFIFSTALDGK 540 (1120)
Q Consensus 472 ~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-----~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~dg~ 540 (1120)
-+|..+...+|+....++..+.+-.|..||+++-..- .-+.. ......++.|.+... ...+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccc
Confidence 3566777778877545666666667899998753221 11111 122334555665543 23455566888
Q ss_pred EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224 541 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 541 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
|++..+........--.-. ...++++|+|.|.++++|...|++.-|... ++....+..
T Consensus 180 l~V~~~~~~~~~v~s~p~t---------------------~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~ 237 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVT---------------------NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE 237 (1405)
T ss_pred hhhhhhhhhhhhhcccCcc---------------------cceeeEEeccccceeeEecCCCeEEEeecc-cceeecccC
Confidence 8777554322211111111 144566677777789999999999988763 333333321
Q ss_pred CC--CCCCcCeEEEcCCCCEEEEE
Q 001224 621 DG--GLPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 621 ~~--~~~~v~~~~~s~~~~~l~~~ 642 (1120)
.. ....|.+++|-....++++-
T Consensus 238 Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 238 PPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CCcCCCcceeEEEEecceeEEEEe
Confidence 11 12468899998776666654
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=9.7 Score=48.34 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=44.7
Q ss_pred CcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 961 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 961 i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
+.+..+......+.....+.+-+|+.........+...++.. +.++..++++-.||.+..||...+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~~ 269 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKLQ 269 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCcee
Confidence 344444444444444455566666665555544444332222 889999999999999999999998663
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.44 E-value=23 Score=32.36 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred ceEEEEecCCCeEEEEEeCCCcEEEEecC--------CCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--
Q 001224 367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVG--------SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-- 436 (1120)
Q Consensus 367 v~~v~~spdg~~lla~g~~dg~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-- 436 (1120)
|+.-+|.....- |++++.-|.|.|.+.. ....+. +-.-...|++++-.+
T Consensus 1 VaiGkfDG~~pc-L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~--------------------~LNin~~italaaG~l~ 59 (136)
T PF14781_consen 1 VAIGKFDGVHPC-LACATTGGKVFIHNPHERGQRTGRQDSDIS--------------------FLNINQEITALAAGRLK 59 (136)
T ss_pred CeEEEeCCCcee-EEEEecCCEEEEECCCccccccccccCcee--------------------EEECCCceEEEEEEecC
Q ss_pred ---CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEE----cCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 437 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 437 ---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~----s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
+...|+.|+... +..||+.....+- .+.-.+.|+++.+ ..+.. ++..+.+..|.-+|.+-.+...
T Consensus 60 ~~~~~D~LliGt~t~-llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~---l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 60 PDDGRDCLLIGTQTS-LLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP---LVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred CCCCcCEEEEeccce-EEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc---EEEECceEEEEEeCCCCcEEEE
Q ss_pred Eeec
Q 001224 510 IFEG 513 (1120)
Q Consensus 510 ~~~~ 513 (1120)
+..+
T Consensus 132 tVtg 135 (136)
T PF14781_consen 132 TVTG 135 (136)
T ss_pred Eecc
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.30 E-value=5.9 Score=43.17 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=91.5
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-Eee-ccccc----ceE-EEEEccCCCEEEEEeC
Q 001224 856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGA 928 (1120)
Q Consensus 856 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~s~ 928 (1120)
+.++.+......+..+-..| |++.|..-+. ..+.|+++.+...- +++ ....+ .|+ ++..-..|..|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555566788889999 8988876654 68889988764321 111 11111 222 2222235667888999
Q ss_pred CCCEEEE-ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeE
Q 001224 929 DSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH 1006 (1120)
Q Consensus 929 Dg~v~iW-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~ 1006 (1120)
||.|.-| |+..+....-.....+.-. ..++..+.-..+-+-++. ...|++.++.....+.+..-. --..+.-
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcce
Confidence 9999877 5544332211111111110 011221111111222222 355666666544333322111 1236677
Q ss_pred EEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224 1007 ATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
++|||.+.+|++- ..|.++++.+++...
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCCCC
Confidence 8999999999865 357899998876543
No 467
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.26 E-value=21 Score=41.65 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=64.6
Q ss_pred EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--------------CC
Q 001224 914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--------------ET 979 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--------------d~ 979 (1120)
+..-++|.+++..+ ..++.+|+... .... .....+.. ..=..+..-|+|++|+.+. +.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence 56678888887655 66777777642 1111 11111100 0014677889999888754 23
Q ss_pred eEEEEEcCCceeeeccccCCCC-------------------------CCeeEEEECC-CCcEEEEEEcCCcEEEEEcCCc
Q 001224 980 QLAIFETTKLECVKQWVPRESS-------------------------APITHATFSC-DSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~~~h~-------------------------~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
.|..+| .+|+.+..|....|- -.+.++.+.+ ++.+|+++-.-..|...|..++
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 466667 777776665443321 2477899988 6666666655568999999999
Q ss_pred ceeeeeCCCc
Q 001224 1034 KLRCRINPSA 1043 (1120)
Q Consensus 1034 ~~~~~~~~~~ 1043 (1120)
+....+-...
T Consensus 304 ~i~Wilg~~~ 313 (477)
T PF05935_consen 304 KIKWILGPPG 313 (477)
T ss_dssp -EEEEES-ST
T ss_pred cEEEEeCCCC
Confidence 9988877543
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.10 E-value=14 Score=42.80 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 505 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~ 505 (1120)
..-++++.-+|.|+-++.+..||.|++|+......-+ +.....+-..+.|...| +++...|..+.-|. ++|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence 3467888888999999999999999999987654321 22233455667776555 56677788888887 556
Q ss_pred ceeEEee
Q 001224 506 AKQYIFE 512 (1120)
Q Consensus 506 ~~~~~~~ 512 (1120)
-..+.|.
T Consensus 85 vvqqqfd 91 (1636)
T KOG3616|consen 85 VVQQQFD 91 (1636)
T ss_pred cchhhcc
Confidence 5544443
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=87.09 E-value=97 Score=39.29 Aligned_cols=419 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVA 444 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~ 444 (1120)
...+++.-|||. |.+|..+-.=+|.--..-..+.. +-.....-=+.+|.+| ||.+-++-
T Consensus 366 aPvala~a~DGS--l~VGDfNyIRRI~~dg~v~tIl~------------------L~~t~~sh~Yy~AvsPvdgtlyvSd 425 (1899)
T KOG4659|consen 366 APVALAYAPDGS--LIVGDFNYIRRISQDGQVSTILT------------------LGLTDTSHSYYIAVSPVDGTLYVSD 425 (1899)
T ss_pred ceeeEEEcCCCc--EEEccchheeeecCCCceEEEEE------------------ecCCCccceeEEEecCcCceEEecC
Q ss_pred ECCCeEEEEEccCCceeeeeeeecccccCeEE----------------------EEEcCCCCceEEEEecCCCcEEEEEC
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND----------------------IAFSHPNKQLCVITCGDDKTIKVWDA 502 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~----------------------v~~s~d~~~~~l~s~s~d~~i~vwd~ 502 (1120)
-....|.--.--.++..+...+.-...+.+.. ++|+.+|.- |++-|. .||+-|
T Consensus 426 p~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~l-YfaD~t---~IR~iD- 500 (1899)
T KOG4659|consen 426 PLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNL-YFADGT---RIRVID- 500 (1899)
T ss_pred CCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcE-EEeccc---EEEEec-
Q ss_pred CCCceeEEeeccccCeEEEee------------ccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224 503 TNGAKQYIFEGHEAPVYSVCP------------HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570 (1120)
Q Consensus 503 ~~~~~~~~~~~h~~~v~~~~~------------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 570 (1120)
.+|-.-..+..|.....-+.. +|.. |+.--.|+++.+.|
T Consensus 501 ~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~----LaV~Pmdnsl~Vld------------------------- 551 (1899)
T KOG4659|consen 501 TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTS----LAVDPMDNSLLVLD------------------------- 551 (1899)
T ss_pred cCceEEEeccCCCCccCccccccccchhheeeecccc----eeecCCCCeEEEee-------------------------
Q ss_pred CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 650 (1120)
.-..+.++++++..+..+.--...+=++..... .+..|.......+++++++|.+.++-++...|.-
T Consensus 552 -----------~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s--kla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNr 618 (1899)
T KOG4659|consen 552 -----------TNVVLRITVVHRVRIILGRPTHCDLANATSSAS--KLADHRTLLIQRDIAVGTDGALYVAESDGRRINR 618 (1899)
T ss_pred -----------cceEEEEccCccEEEEcCCccccccCCCchhhh--hhhhhhhhhhhhceeecCCceEEEEeccchhhhh
Q ss_pred EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 730 (1120)
Q Consensus 651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 730 (1120)
...-+. ++.+......+.-..+..++
T Consensus 619 vr~~~t------------------------------------------------------dg~i~ilaGa~S~C~C~~~~ 644 (1899)
T KOG4659|consen 619 VRKLST------------------------------------------------------DGTISILAGAKSPCSCDVAA 644 (1899)
T ss_pred eEEecc------------------------------------------------------CceEEEecCCCCCCCccccc
Q ss_pred cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224 731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810 (1120)
Q Consensus 731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 810 (1120)
....+..+..-.. .++-..+.+++.+|||..+++-..+-.|+--.-+....+.....-..
T Consensus 645 ~cdcfs~~~~~At----------~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~---------- 704 (1899)
T KOG4659|consen 645 CCDCFSLRDVAAT----------QAKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEIT---------- 704 (1899)
T ss_pred CCccccccchhhh----------ccccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeecc----------
Q ss_pred CCcccccCCCCCCCCCccEEEEccCCCEEEEEe---CCcEEEEEc---CCCceeeeecCCCCCeEEEEEecCCCcEEEEE
Q 001224 811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNM---MTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 884 (1120)
Q Consensus 811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 884 (1120)
....-.--.|+.+|...-+.+ ..++..|.. .+...+..+....+.+..+-=.. ++.....-
T Consensus 705 ------------~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~l~ilrd~-~s~~~~~~ 771 (1899)
T KOG4659|consen 705 ------------DPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITDASGNVLRVLRDN-DSLFDLET 771 (1899)
T ss_pred ------------CcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhhcCCcEEEEEecC-CCCcceee
Q ss_pred eCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCC-CCEEEEECC
Q 001224 885 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSD 938 (1120)
Q Consensus 885 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~ 938 (1120)
..+|.+..--......++.+......-..+.+.-....|++-..| |.-.+|+.+
T Consensus 772 ~~~~q~~~l~~~~~g~L~~vSt~d~~~~~~ty~g~tglL~Tk~d~tg~~~~yeYD 826 (1899)
T KOG4659|consen 772 TLGGQTTLLMSAYDGTLEQVSTRDATSRDATYLGYTGLLLTKRDDTGTAVVYEYD 826 (1899)
T ss_pred cCCCcEEEEEEecCCceeEeccCCCccceeeeeccccceeeeecccceEEEEccc
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.69 E-value=36 Score=37.46 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=94.3
Q ss_pred ccccEEEEEEcCCCceEEEeccCce------EEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 756 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
.-+.+.++.+.+++..+++.+.+|. +...++..... ..........+.+-+.. |..... ......+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~~------~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFPK------NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCCc------CCCChhH
Confidence 3466788999976666777777776 55444433111 01111111111222221 221110 2236678
Q ss_pred EEEccCCCEEEEEe-C------CcEEEEEcCCCceeeeec---------------CCCCCeEEEEEecCCCcEEEEEeC-
Q 001224 830 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMD- 886 (1120)
Q Consensus 830 l~~s~d~~~l~~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~lasg~~- 886 (1120)
|++.++|.++++.- + ..|+.++.. ++....+. .......+|+++| |++.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888777765 5 668888866 55544431 1234588999999 7885555442
Q ss_pred ----CC--c-------EEEEEee--c-cee----eEeecc-----cccceEEEEEccCCCEEEEE-----eCCCCEEEEE
Q 001224 887 ----DS--S-------IQIYNVR--V-DEV----KSKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS 936 (1120)
Q Consensus 887 ----dg--~-------v~vwd~~--~-~~~----~~~l~~-----h~~~V~~l~~s~d~~~l~s~-----s~Dg~v~iWd 936 (1120)
|+ . ++++... + ++. ...+.. ....|+.+.+-+++++|+-= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 5555443 3 222 222332 34668888888888877632 1234455555
Q ss_pred CCC
Q 001224 937 SDG 939 (1120)
Q Consensus 937 ~~~ 939 (1120)
+..
T Consensus 248 v~l 250 (326)
T PF13449_consen 248 VDL 250 (326)
T ss_pred EEc
Confidence 443
No 471
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.53 E-value=62 Score=36.45 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=104.5
Q ss_pred EecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEE
Q 001224 372 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ 451 (1120)
Q Consensus 372 ~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~ 451 (1120)
..-||+ +.++..+|.|.-.|.++++.+-...+ . +....+..-.+..+|+ |..++.++.+.
T Consensus 65 ~~~dg~--v~~~~~~G~i~A~d~~~g~~~W~~~~----------------~-~~~~~~~~~~~~~~G~-i~~g~~~g~~y 124 (370)
T COG1520 65 ADGDGT--VYVGTRDGNIFALNPDTGLVKWSYPL----------------L-GAVAQLSGPILGSDGK-IYVGSWDGKLY 124 (370)
T ss_pred EeeCCe--EEEecCCCcEEEEeCCCCcEEecccC----------------c-CcceeccCceEEeCCe-EEEecccceEE
Confidence 344554 66667888888888888876532111 0 0011122222222666 77788888888
Q ss_pred EEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc---CeEEEeeccCCC
Q 001224 452 IYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKEN 528 (1120)
Q Consensus 452 iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~ 528 (1120)
.+|..+|+.+... ...+. -.+..-....++. +..++.++.+.-.|..+|+.+.....-.. .+..--. ..+
T Consensus 125 ~ld~~~G~~~W~~-~~~~~-~~~~~~~v~~~~~---v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~~ 197 (370)
T COG1520 125 ALDASTGTLVWSR-NVGGS-PYYASPPVVGDGT---VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IAS 197 (370)
T ss_pred EEECCCCcEEEEE-ecCCC-eEEecCcEEcCcE---EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce--eec
Confidence 9999888765422 22220 1222223334443 44454788888888888888766543221 1110000 112
Q ss_pred ceEEEEEec--CCeEEEEecCCCCCceeeeCC----CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224 529 IQFIFSTAL--DGKIKAWLYDNLGSRVDYEAP----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602 (1120)
Q Consensus 529 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 602 (1120)
..++.+.. ++.+.-.|..++......... ...+........+ .++ . + ..+..++.++
T Consensus 198 -~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~-~v~------------v--~-~~~~~~~~~g 260 (370)
T COG1520 198 -GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG-PVY------------V--D-GGVYAGSYGG 260 (370)
T ss_pred -ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCc-eEE------------E--C-CcEEEEecCC
Confidence 23444444 444555555554444332110 0000000000000 000 0 1 1246677788
Q ss_pred eEEEEECCCCceeEEEecC
Q 001224 603 SIKFWDMDSVQLLTSIDAD 621 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~~~ 621 (1120)
.+...|..+++.+..+...
T Consensus 261 ~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 261 KLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eEEEEEcCCCceEEEEecc
Confidence 8999999999998888753
No 472
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.12 E-value=21 Score=40.08 Aligned_cols=93 Identities=10% Similarity=0.102 Sum_probs=63.2
Q ss_pred CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC---CEEEEEeCCC
Q 001224 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDDF 602 (1120)
Q Consensus 526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg 602 (1120)
++.|..++-.|.+|.+.++-.+.-+....+......|.+-.++-+ .+++.....-.+..++|+|+. ..|+.-+.|.
T Consensus 112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn 190 (741)
T KOG4460|consen 112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN 190 (741)
T ss_pred cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence 456678888888888877654433444444444444555554443 356666666677788999975 6788889999
Q ss_pred eEEEEECCCCceeEEEe
Q 001224 603 SIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~ 619 (1120)
.|++||+.....+....
T Consensus 191 viRiy~lS~~telylqp 207 (741)
T KOG4460|consen 191 VIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEEEEecCCcchhhccC
Confidence 99999998877664443
No 473
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.01 E-value=24 Score=41.60 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=57.0
Q ss_pred CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 966 (1120)
Q Consensus 887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 966 (1120)
--.|+||++. |.++..+.-....+-.+.|+.+ ..|+....||++.||++-......... |.......|..+.|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEE
Confidence 3468888854 6666555444447889999966 466677899999999987643322111 11111124666666
Q ss_pred ccCCcEEEEEeCCeEEEEEcC
Q 001224 967 HQDQIHFLVVHETQLAIFETT 987 (1120)
Q Consensus 967 spdg~~la~~~d~~v~i~d~~ 987 (1120)
..+|..+.+.++..+.+.+..
T Consensus 136 f~~GVavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQVILINGVE 156 (829)
T ss_pred ecCceEEEecCCcEEEEcCCC
Confidence 667766665544445554443
No 474
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.93 E-value=3.5 Score=40.45 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.6
Q ss_pred CceEEEEEcCCC------CeEEEEECCCeEEEEEccC
Q 001224 427 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG 457 (1120)
Q Consensus 427 ~~V~~l~~spdg------~~las~~~dg~v~iwd~~~ 457 (1120)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999943 4788899999999998664
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.53 E-value=4.7 Score=41.15 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=52.0
Q ss_pred EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCccccccccc-------CCCCceEEEEEcCCCCeEEE
Q 001224 371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l~~spdg~~las 443 (1120)
.+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++
T Consensus 17 ~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 17 FLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred EEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 35667886 777788999999999998877631 1111 1222 46678999999988888777
Q ss_pred EECCCeEEEEEccCC
Q 001224 444 AYSRHIVQIYSYHGG 458 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~ 458 (1120)
-+ +|....|+.+-+
T Consensus 84 ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 84 LS-NGDSYSYSPDLG 97 (219)
T ss_pred Ee-CCCEEEeccccc
Confidence 65 467888877644
No 476
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.43 E-value=63 Score=35.53 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=36.4
Q ss_pred CCcEEEEEe------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC----cEEEEEcCCccee
Q 001224 969 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKLR 1036 (1120)
Q Consensus 969 dg~~la~~~------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----~v~iwd~~~~~~~ 1036 (1120)
+++..+.|. ...+..||..+.+-...-.... .......+...++++.+.|+.++ .+.+||..+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 555555542 1368889988765433211111 11222233344677777787664 3568888876643
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.90 E-value=6.2 Score=43.10 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
..++|.++.||+|.+ ++|+--.|++|.+.+....+...... ...+.-+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 456999999999999 79999999999999985443322100 012223446899999876 6677
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 505 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~ 505 (1120)
..+..| +-+|.+...+ +.....+.|...|.--.|+++..-.+++|+-..+++.=+-++++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 766666 7777665432 12224556888999999999988533344434444444444443
No 478
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.85 E-value=80 Score=36.27 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=61.5
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
.+.....|.++.+.-.|. +-+|+.|| +..||..+++.+....- ....+|.++.-+-.|+
T Consensus 160 ~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~ 218 (671)
T COG3292 160 PLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR 218 (671)
T ss_pred ccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc
Confidence 334678899999999997 55566655 45677777776653110 1113566666555554
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
|.+|+.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +-.|+..|..
T Consensus 219 -LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~ 269 (671)
T COG3292 219 -LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLW 269 (671)
T ss_pred -EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccce
Confidence 56677777 777776663211100 001234455555444454 5555555543
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.49 E-value=8.8 Score=48.05 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=98.3
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc--------cCCCEEEEEeCCCCEEEEECCCcc
Q 001224 870 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWE 941 (1120)
Q Consensus 870 ~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~v~iWd~~~~~ 941 (1120)
.+-+-|.=++.-+ +.|..+.+|+.+++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+
T Consensus 83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 3334442344333 458899999999988788888888888887653 222344444444557777554332
Q ss_pred cccc--eeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE--EEEcCCc----eee-------------ec-ccc-C
Q 001224 942 KQKN--RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL----ECV-------------KQ-WVP-R 998 (1120)
Q Consensus 942 ~~~~--~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~--i~d~~~~----~~~-------------~~-~~~-~ 998 (1120)
.... .....+. .......|.++....+|+.+.+|.||.|. +|....+ +|. .. +.. .
T Consensus 161 ~~~~~~~f~~~~~-i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 161 FTGELSIFNTSFK-ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ccCccccccccee-eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 2111 1111100 00112467888988999999999888444 2222221 111 00 111 2
Q ss_pred CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 999 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
.+..+|..++.......|.+=++-|+|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4577999999988888899999999999999976
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.69 E-value=77 Score=35.15 Aligned_cols=199 Identities=8% Similarity=0.095 Sum_probs=107.6
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec---CCCcE--EEEEe-CC---CcEEEEEeec--ceee
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP---QDNNI--IAIGM-DD---SSIQIYNVRV--DEVK 901 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp---~d~~~--lasg~-~d---g~v~vwd~~~--~~~~ 901 (1120)
|...+++... .+.+.+||+.. +.+..+. .+..+.+..-. -+++. ||.++ .+ ..|++|.+.. +. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 3444555555 68899999974 5555554 23455444332 02332 34443 32 4699998873 43 3
Q ss_pred Eeecc-------cccceEEEEEc--c-CCC-EEEEEeCCCCEEEEECCCccc--ccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 902 SKLKG-------HSKRITGLAFS--H-ALN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 902 ~~l~~-------h~~~V~~l~~s--~-d~~-~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
..+.. -...+..+|+- + +|. +++..+.+|.+..|.+..... .....++.+... ..+..|+...
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDD 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDD 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEET
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEec
Confidence 33321 12346778774 3 454 556778889999888863221 222334433332 2578888888
Q ss_pred CCcEEEEE-eCCeEEEEEcCCc-----eeeeccccCCCCCCeeEEEEC--CCCc-EEEEEE-cCCcEEEEEcCC-cceee
Q 001224 969 DQIHFLVV-HETQLAIFETTKL-----ECVKQWVPRESSAPITHATFS--CDSQ-LVYACF-LDATVCVFSAAN-LKLRC 1037 (1120)
Q Consensus 969 dg~~la~~-~d~~v~i~d~~~~-----~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~-~Dg~v~iwd~~~-~~~~~ 1037 (1120)
...+|.++ .+..|.-|+.+.. +.+......+....|-.|++- .+++ ||++.+ .+++..||+... ...+.
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 88888887 5567888887522 222222222336678888874 3443 555554 467899999875 45555
Q ss_pred eeC
Q 001224 1038 RIN 1040 (1120)
Q Consensus 1038 ~~~ 1040 (1120)
.+.
T Consensus 298 ~f~ 300 (381)
T PF02333_consen 298 SFR 300 (381)
T ss_dssp EEE
T ss_pred eEE
Confidence 554
No 481
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.37 E-value=79 Score=39.18 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=114.4
Q ss_pred EEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001224 763 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 842 (1120)
Q Consensus 763 l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~ 842 (1120)
.++..-|+.+..|+.+|.+.+|.+........... .. ....... .-+..+|..+...+.-..+.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~---------~~~~~~~----~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT---------ETVKFEK----EFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc---------chhHHhh----hhccchhHHHhhcchhcchhee
Confidence 34455677899999999999998754322111000 00 0000000 1135677777777777778888
Q ss_pred eCCcEEEEEcCCCceeeeecCCCCCeEEEEEe--cCC-C--cEEEEEe-CCCcE-EEEEeecceeeEeecccccceEEEE
Q 001224 843 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQD-N--NIIAIGM-DDSSI-QIYNVRVDEVKSKLKGHSKRITGLA 915 (1120)
Q Consensus 843 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--p~d-~--~~lasg~-~dg~v-~vwd~~~~~~~~~l~~h~~~V~~l~ 915 (1120)
+|+.|.++++.+.+... ...+-.++...++. +.. + .+.+... ....+ ..|+-+.+-.+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~-~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVP-SGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCcccccc-cccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 89999999987765521 11111111111111 000 1 1222222 11111 1222222211111111111222233
Q ss_pred EccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeec-
Q 001224 916 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ- 994 (1120)
Q Consensus 916 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~- 994 (1120)
| .+..+.++-.+....+|.-.++......+...... ..-..+.--+++..++.+.|+...+-|.......+.
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34444444443444455444432211111111100 112344555667677777777766666432221111
Q ss_pred cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee
Q 001224 995 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus 995 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
+.. .....++.+ +.-|+++- .++.|.||+..++.+++.+
T Consensus 238 l~w---s~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhcc
Confidence 000 111222222 45566655 4669999999999888776
No 482
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.04 E-value=4.9 Score=47.82 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=78.6
Q ss_pred CceEEEEecC-CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCC---CCcccccccccCCCCceEEEEEc--CCCC
Q 001224 366 SPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALVKDPGVSVNRVIWS--PDGS 439 (1120)
Q Consensus 366 ~v~~v~~spd-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~h~~~V~~l~~s--pdg~ 439 (1120)
.|+.|....= ++.+|+.+..||.|.+|.+++=-...... .-+... .....+. ....-...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCC-eEeecCCceeEEEEEecCcce
Confidence 3455544432 23478999999999999874310000000 000000 0000011 122234589999999 8889
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCC----ceEEEEecCCCcEEEEEC
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA 502 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~----~~~l~s~s~d~~i~vwd~ 502 (1120)
+||+++....|.||-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999999899886654211111101113566899999987651 136888999999999887
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.30 E-value=80 Score=39.33 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=53.8
Q ss_pred CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee----CCCc----ccCCCCCCCCc-cceEEEecCCCCCEEEE
Q 001224 1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSA----YLPAGVSSSNV-HPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~----~~~~----~~~~g~~~~~v-~~~~i~~~p~d~~~l~s 1071 (1120)
.+.|.+++...-+.+++.+..||+|.++|-.+.+.+... .... ....|-+-..+ .++.++|||+ +..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt-~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT-MCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcc-cceEEE
Confidence 567889998888889999999999999999888776554 2111 11111100000 2345899995 778888
Q ss_pred EeCCCcEE
Q 001224 1072 GLSDGGVH 1079 (1120)
Q Consensus 1072 ~~~Dg~v~ 1079 (1120)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.29 E-value=31 Score=39.35 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=61.0
Q ss_pred cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC-CCCCCCcEEEEccCC------cEEEEE--e
Q 001224 907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQDQ------IHFLVV--H 977 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fspdg------~~la~~--~ 977 (1120)
.-..-+.|+|.|||++|++--..|.|++++-.++.... ......-.. ........++|+|+- .+|.++ .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~--~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV--VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee--eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 34557899999999888876556999999765543211 111110000 013567899999885 234332 1
Q ss_pred ---------CCeEEEEEcCCc-------ee-eeccccCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224 978 ---------ETQLAIFETTKL-------EC-VKQWVPRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus 978 ---------d~~v~i~d~~~~-------~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
...|.-|.+... +. +..+.. .....-..|+|.|||.+.++.+..
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~-~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA-GNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCC-CCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 11 111111 111224567899999877765543
No 485
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.12 E-value=69 Score=33.48 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeEeecccccce
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI 911 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V 911 (1120)
++++..+. +..+++.|+.+......+..-...-.+-.+.- .|++..++..|.-+-+.|+.+ -.+..........-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee
Q 001224 912 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 991 (1120)
Q Consensus 912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~ 991 (1120)
..++.| |++-..+..|+-+.|-|+.. ..-..+.++......+..+..+++-.+++.. +..+.+-|..+-..
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvlivd~s~~ss 245 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPSS 245 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEEEecCCCCC
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
...+-......++.--.|.--+++...+..+.-+-+-|+++
T Consensus 246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ceEeeccccCCcccccceecccceeeeeccccCceeEeccC
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.05 E-value=39 Score=43.11 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=28.6
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCcee
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL 400 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~ 400 (1120)
.....++|+|... ++|.|+..|.|.++-...-+..
T Consensus 36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 4667889999998 7999999999999987654433
No 487
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.99 E-value=81 Score=34.20 Aligned_cols=210 Identities=10% Similarity=-0.024 Sum_probs=101.7
Q ss_pred CCCCccEEEEccCCCEEEEEeCCc--EEEEEcCCCce---------------eeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224 823 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKT---------------MATFMPPPPAATFLAFHPQDNNIIAIGM 885 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~sdg~--i~vwd~~~~~~---------------~~~~~~~~~~i~~l~~sp~d~~~lasg~ 885 (1120)
+...|+++.+.+..+.+++-+|.. ++++++..... ....-++......++........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888665 99999853221 0111233333444444431122333344
Q ss_pred CCCcEEEEEeecc--e--eeEee---c-ccccceEEEEEccC--CCEEEEEeCCCCEEEEECCC--cccccceeeeccCC
Q 001224 886 DDSSIQIYNVRVD--E--VKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG 953 (1120)
Q Consensus 886 ~dg~v~vwd~~~~--~--~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~~ 953 (1120)
...+|.++..... + ....+ . .-..++..+..+++ ...|+.|+..+...++++.. ...... .+....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~- 198 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLS- 198 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-cccccc-
Confidence 4556766544321 1 11110 0 01123333333333 45677776643345555543 111000 000000
Q ss_pred CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224 954 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 954 ~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
... .....++..-+++.+|++ .|.....-|.......+.... .-...+.++++. ..||++-. +..|.|+++.++
T Consensus 199 ~~~-~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 199 EET-SLKPISVVQVPRDEFLLC-YDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccc-ccCceEEEEECCCeEEEE-ECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 000 001233433445544444 444444555442122111111 114456677775 46666554 566999999999
Q ss_pred ceeeeeC
Q 001224 1034 KLRCRIN 1040 (1120)
Q Consensus 1034 ~~~~~~~ 1040 (1120)
+++..+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9988776
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.70 E-value=8.8 Score=39.21 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=49.2
Q ss_pred EcCCCCeEEEEECCCeEEEEEccCCceeeeeee----ec-------ccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----ID-------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 502 (1120)
Q Consensus 434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~----l~-------~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~ 502 (1120)
+..++.+|++.+.+|.+++||+.+++.+..... +. .....|..+.++.+|. -+++-+ +|....||.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 456799999999999999999999876532211 22 2456788888887777 355544 467788875
Q ss_pred CCCce
Q 001224 503 TNGAK 507 (1120)
Q Consensus 503 ~~~~~ 507 (1120)
.-+.-
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 54443
No 489
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.66 E-value=18 Score=35.51 Aligned_cols=151 Identities=12% Similarity=-0.021 Sum_probs=91.8
Q ss_pred CCCEEEEEeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccc
Q 001224 919 ALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996 (1120)
Q Consensus 919 d~~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~ 996 (1120)
+|.++.+.+.- ..|++||+.+++......+.. +... -..+.-..|.-+..+-.++.-..||.++.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~F-----gEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVF-----GEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-cccc-----ccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 45667776654 359999999887655544441 1100 012223344556666789999999999999998876
Q ss_pred cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224 997 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus 997 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
.. +.=+.++ .|++.|..+....+++.-|-.+.....++........ -...+ -+.|- ||...+-.-.+.
T Consensus 129 y~---GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p---v~~LN--ELE~V--dG~lyANVw~t~ 196 (262)
T COG3823 129 YE---GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP---VSKLN--ELEWV--DGELYANVWQTT 196 (262)
T ss_pred cC---Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee---ccccc--ceeee--ccEEEEeeeeec
Confidence 53 3445555 3666677665556677777777666655441111100 01122 34555 477777777777
Q ss_pred cEEEEecCCCC
Q 001224 1077 GVHVFEPLESE 1087 (1120)
Q Consensus 1077 ~v~vW~~~~~~ 1087 (1120)
.|..-++.+|+
T Consensus 197 ~I~rI~p~sGr 207 (262)
T COG3823 197 RIARIDPDSGR 207 (262)
T ss_pred ceEEEcCCCCc
Confidence 77777777777
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.45 E-value=20 Score=45.11 Aligned_cols=170 Identities=13% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 431 (1120)
Q Consensus 352 ~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 431 (1120)
..|..+..-++|...=+.+-+-|.=.+.-+ +.|+.+.+|+.+++..... +.+-...|..
T Consensus 66 ~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~ 124 (1311)
T KOG1900|consen 66 NIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILK 124 (1311)
T ss_pred cCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhee
Confidence 345555555555555555555554332333 4679999999998654442 3344445555
Q ss_pred EEE--------cCCCCeEEEEECCCeEEEEEccCCcee------eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 432 VIW--------SPDGSLFGVAYSRHIVQIYSYHGGDEV------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 432 l~~--------spdg~~las~~~dg~v~iwd~~~~~~~------~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
|.. -|.=++|..-+.--.|.|+-+.-.+.. .....+.-....|+|++...+|+ ++-+|.||
T Consensus 125 V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg-- 199 (1311)
T KOG1900|consen 125 VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG-- 199 (1311)
T ss_pred eeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--
Confidence 543 334456665555566777654322111 11112222345789999888888 55555566
Q ss_pred EEEEC----CCC---c-e----------------eEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224 498 KVWDA----TNG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 549 (1120)
Q Consensus 498 ~vwd~----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 549 (1120)
.+|.+ .+| + | +-.+. .+..+|..+.+.. ....+++-+..|+|.+||+...
T Consensus 200 ~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 200 NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccCC
Confidence 44543 221 1 1 11122 4677898888743 4468999999999999999763
No 491
>PRK13613 lipoprotein LpqB; Provisional
Probab=80.31 E-value=1.3e+02 Score=36.16 Aligned_cols=191 Identities=9% Similarity=-0.026 Sum_probs=99.3
Q ss_pred CccEEEEccCCCEEEEEe-CC-cEEEEEcCCCce----e-eeecCCCCCeEEEEEecCCCcEEEEEeC--CCc--EEEEE
Q 001224 826 AVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKT----M-ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSS--IQIYN 894 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s-dg-~i~vwd~~~~~~----~-~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~--v~vwd 894 (1120)
.+.+.+.++++..+|... ++ .+++..+..+.. . ..+. ....+.-.|.+ ++ .+-+... ++. +++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence 678899999999888776 44 466665533322 1 1122 23466667777 44 3333322 222 55554
Q ss_pred eecceee--Eeecccc-cceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 895 VRVDEVK--SKLKGHS-KRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 895 ~~~~~~~--~~l~~h~-~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
- +++.. ... ... ..|+.+..|+||-.++.... .+.|.|=-+.....-. ..+..+..-......+..++|..
T Consensus 440 ~-~G~~~~V~~~-~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~ 516 (599)
T PRK13613 440 G-DGEPVEVRTP-ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAG 516 (599)
T ss_pred C-CCcEEEeecc-ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcC
Confidence 2 34332 111 222 37999999999988775443 3556555444322211 11111111111123589999999
Q ss_pred CCcEEEEE--eC--CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEEcCCcE
Q 001224 969 DQIHFLVV--HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATV 1025 (1120)
Q Consensus 969 dg~~la~~--~d--~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v 1025 (1120)
++.+++.+ .. ..+....+......... .+.-..+..|+-..+.+ .|+.+..++.|
T Consensus 517 ~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 517 DSQLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCEEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 99988754 23 33444444422221111 12244566677776666 44443455554
No 492
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.17 E-value=1.1e+02 Score=34.56 Aligned_cols=151 Identities=9% Similarity=-0.017 Sum_probs=82.6
Q ss_pred eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce
Q 001224 911 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 990 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~ 990 (1120)
...+..++||.+++.+..-..++-||--. . ....+.... ...+..+.|.+++..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~-~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--P-YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--c-ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 44456678887777665443333344321 0 001122111 13678999999999998887777544 333332
Q ss_pred -----eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 991 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 991 -----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
.........-...+.++.|.+|+..+++| .+|.+.... +.|+.=.+....... ..+.+ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-----~~~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-----AANLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-----Cccee--EEEEcC--
Confidence 11211111113458999999888876655 578777654 445443332211111 12255 788876
Q ss_pred CCEEEEEeCCCcEEEE
Q 001224 1066 PNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1066 ~~~l~s~~~Dg~v~vW 1081 (1120)
.+.....+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3455555568887655
No 493
>PRK13615 lipoprotein LpqB; Provisional
Probab=79.97 E-value=1.3e+02 Score=35.45 Aligned_cols=154 Identities=9% Similarity=-0.020 Sum_probs=88.0
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC-cccccce
Q 001224 868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR 946 (1120)
Q Consensus 868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~ 946 (1120)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-++..+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 88888888778877777654 22222222 2245666777777 555554444445444332 2211
Q ss_pred eeeccCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcC--Cc--eee-ec-cccCCCCCCeeEEEECCCCcEE
Q 001224 947 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT--KL--ECV-KQ-WVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus 947 ~~~~~~~~~~~~~~i~~~~fspdg~~la~~~----d~~v~i~d~~--~~--~~~-~~-~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
.... +.. ....|..+..|+||..++.-. .++|.|--+. .+ ..+ .. .........+.++.|..++.++
T Consensus 408 ~v~v-~~~--~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 408 PVAV-SWT--ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred Eeec-ccc--CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 1111 111 124799999999999988732 3556653332 22 122 11 1111124489999999999986
Q ss_pred EEEE---cCCcEEEEEcCC
Q 001224 1017 YACF---LDATVCVFSAAN 1032 (1120)
Q Consensus 1017 ~s~~---~Dg~v~iwd~~~ 1032 (1120)
+.+. .+..+++..+..
T Consensus 485 Vl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEeccCCCCceEEEEECCC
Confidence 6552 335566666653
No 494
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.78 E-value=26 Score=39.13 Aligned_cols=144 Identities=8% Similarity=0.048 Sum_probs=83.1
Q ss_pred CCcEEE-EEeCCCcEEEEEeecceeeEeecccccceEEEEEccCC--------CEEEEEeCCCCEEEEECCC-cccccce
Q 001224 877 DNNIIA-IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL--------NVLVSSGADSQLCVWSSDG-WEKQKNR 946 (1120)
Q Consensus 877 d~~~la-sg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~--------~~l~s~s~Dg~v~iWd~~~-~~~~~~~ 946 (1120)
|..+|. .|..-..++--|+..|+.+..+.-|..- -+.|.|+. +.|+-.+ |..|.--|.+- |.+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 555554 4455567888899999999999988775 46777753 3455444 44443334332 1111111
Q ss_pred eeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcE
Q 001224 947 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025 (1120)
Q Consensus 947 ~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v 1025 (1120)
-.+...+.. ...+..- ...-++|+ +..|-|++||.-.-+....+ ++-..+|..+..+.+|+++++.+. .++
T Consensus 555 esKdY~tKn----~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtal--P~lG~aIk~idvta~Gk~ilaTCk-~yl 626 (776)
T COG5167 555 ESKDYKTKN----KFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTAL--PGLGDAIKHIDVTANGKHILATCK-NYL 626 (776)
T ss_pred eehhccccc----ccccccc-ccCceEEEecCCCceeeehhhcchhhhcC--cccccceeeeEeecCCcEEEEeec-ceE
Confidence 111111111 1122222 23446666 57789999996543332222 255789999999999999887764 466
Q ss_pred EEEEcC
Q 001224 1026 CVFSAA 1031 (1120)
Q Consensus 1026 ~iwd~~ 1031 (1120)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666653
No 495
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=32 Score=37.91 Aligned_cols=127 Identities=6% Similarity=0.050 Sum_probs=78.0
Q ss_pred EeCCCcEEEEEeecc--eeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCC
Q 001224 884 GMDDSSIQIYNVRVD--EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 960 (1120)
Q Consensus 884 g~~dg~v~vwd~~~~--~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1120)
+...|.+.=|.+... .....+ ....++|.++.||+|.+.||.--.|.+|.+.+....+..... ...+......
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~----~~~ck~k~~~ 114 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY----TQECKTKNAN 114 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH----HHHhccCcce
Confidence 334455555554431 111122 224568999999999999999999999999998543221111 1111111235
Q ss_pred CcEEEEccCCcEEEEEeCCeEEEEEcCCce-eeeccccCCCCCCeeEEEECCCCcEEE
Q 001224 961 DTRVQFHQDQIHFLVVHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVY 1017 (1120)
Q Consensus 961 i~~~~fspdg~~la~~~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1017 (1120)
|...+|+.. .-+|.-.+..+.+|-..... .++... .|...|.-..|.++-+.++
T Consensus 115 IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 115 ILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred eEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh--hcccCccEEEEccccceEe
Confidence 788888877 56666677777777654332 222222 5677788888888877543
No 496
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.13 E-value=30 Score=41.45 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCCeEEEEECCCeEEEEEccC----Cceeeeeeeecc--------------------cccCeEEEEEcC----CCCceE
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHG----GDEVRQHLEIDA--------------------HVGGVNDIAFSH----PNKQLC 487 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~----~~~~~~~~~l~~--------------------h~~~V~~v~~s~----d~~~~~ 487 (1120)
++...++.+..||.+....... +...... .+.. -.+.+..++++. +.. +
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT--F 232 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT--E
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC--E
Confidence 4778899999999888877664 2211110 0111 123455666666 444 7
Q ss_pred EEEecCCCcEEEEECCCCceeEEeecc
Q 001224 488 VITCGDDKTIKVWDATNGAKQYIFEGH 514 (1120)
Q Consensus 488 l~s~s~d~~i~vwd~~~~~~~~~~~~h 514 (1120)
+++.+.|+++|+||+.++.++.+..-.
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999999998776543
No 497
>PRK13614 lipoprotein LpqB; Provisional
Probab=78.99 E-value=1.5e+02 Score=35.32 Aligned_cols=157 Identities=12% Similarity=0.139 Sum_probs=87.0
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE-eecccccceEEEEEccCCCEEEEEeCCC--CEEEEECCC-ccc
Q 001224 867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDG-WEK 942 (1120)
Q Consensus 867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~-~~~ 942 (1120)
.+.+++.++ ++..+|....++. .+|-...+.... .+.+ ..++.-.|.++| ++-++..+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888776662 344322233222 2333 236677788777 555554433 444443221 111
Q ss_pred ccce--e--eeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCe--EEEEEc---CCce--eeeccccCCCCCCeeEEEE
Q 001224 943 QKNR--F--LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ--LAIFET---TKLE--CVKQWVPRESSAPITHATF 1009 (1120)
Q Consensus 943 ~~~~--~--~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~--v~i~d~---~~~~--~~~~~~~~~h~~~v~~l~~ 1009 (1120)
.... . .....+ ..|..+..|+||..++.- .++. |.|--+ ..|. .+.....-++...+.++.|
T Consensus 419 ~~~~~~~v~~~~l~g-----~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W 493 (573)
T PRK13614 419 AQAPTVTLTADWLAG-----RTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAW 493 (573)
T ss_pred ccccceeecccccCC-----CeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEE
Confidence 0000 0 111111 249999999999998872 4665 665433 2343 1111111122468899999
Q ss_pred CCCCcEEEEEE---cCCcEEEEEcCCc
Q 001224 1010 SCDSQLVYACF---LDATVCVFSAANL 1033 (1120)
Q Consensus 1010 s~dg~~l~s~~---~Dg~v~iwd~~~~ 1033 (1120)
..++.+++.+. .+..+++..+..+
T Consensus 494 ~~~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 494 VGDSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred cCCCEEEEEeccCCCcceEEEEEeCCC
Confidence 99999877654 2345667676444
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.81 E-value=1.1e+02 Score=33.90 Aligned_cols=198 Identities=18% Similarity=0.303 Sum_probs=103.6
Q ss_pred CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEE----cCCCCceEEEEecC--C--CcEEEEECC--CC
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCGD--D--KTIKVWDAT--NG 505 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~----s~d~~~~~l~s~s~--d--~~i~vwd~~--~~ 505 (1120)
|...+++....++-+.+||++... +. .+. .+.++.|.. .-.|+..-|+.++. + .+|++|.+. ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq---~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQ---SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EE---EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EE---eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 456677778888889999999764 32 122 234444432 12344422444442 2 469999775 34
Q ss_pred ceeEEeec-------cccCeEEEeeccCC-Cc-eEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEE
Q 001224 506 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 506 ~~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
. +..+.. ....+..+|+..++ +| -+.+....+|.+..|.+...+. .... ..|..+..
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~-------- 206 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV-------- 206 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence 3 333321 12347788875443 33 4667778899999887753221 1100 01111111
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-----CceeEEEecCCCCCCcCeEEEc--CCC-CEEEEE-ECCC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFN--KDG-CLLAVS-TNDN 646 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s--~~~-~~l~~~-~~dg 646 (1120)
...+-.+..+.....|..+-++.-|+-|+.+. ++.+....+..-...+-.+++- .++ .||+++ -.++
T Consensus 207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 11344556666667888888888888887752 1222222222223345566663 333 244444 4477
Q ss_pred cEEEEEccCc
Q 001224 647 GIKILATSDG 656 (1120)
Q Consensus 647 ~i~iwd~~~~ 656 (1120)
+..+|+....
T Consensus 283 sf~Vy~r~~~ 292 (381)
T PF02333_consen 283 SFAVYDREGP 292 (381)
T ss_dssp EEEEEESSTT
T ss_pred eEEEEecCCC
Confidence 8999997654
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=78.46 E-value=1.1e+02 Score=33.34 Aligned_cols=233 Identities=8% Similarity=-0.005 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCcEEEEEcCC--CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-----------
Q 001224 835 NDSYVMSASGGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK----------- 901 (1120)
Q Consensus 835 d~~~l~~~sdg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~----------- 901 (1120)
++++++.|++..+.+.++.. .+..+.+ +...|+++...+.-+.+++.++....++++++..-...
T Consensus 12 ~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 34689999977788888764 2333333 45689999999844444444544455999998543210
Q ss_pred ----EeecccccceEEEEEccCC-CEEEEEeCCCCEEEEECCCcccccceeeecc-CCCCCCCCCCcEEEEccC--CcEE
Q 001224 902 ----SKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQD--QIHF 973 (1120)
Q Consensus 902 ----~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspd--g~~l 973 (1120)
...-+|.......+..... ..++.++...+|.++........ ....+.. .-......++..+..+++ ...+
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~-f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKK-FKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhh-hhhhcccccccCCCCccceEeeecccccceEE
Confidence 0112333333333333222 22334444566777654432111 1111110 000001123344444443 4566
Q ss_pred EEEeCC-eEEEEEcCC--ceeee---ccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee--eeCCCccc
Q 001224 974 LVVHET-QLAIFETTK--LECVK---QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSAYL 1045 (1120)
Q Consensus 974 a~~~d~-~v~i~d~~~--~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~--~~~~~~~~ 1045 (1120)
.+|.+. ...++++.. ..... .+..........++..-+++.+|++- |....+-|....+... .+. .
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~----w 242 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPILH----W 242 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--CcEEEEEeCCCCccccceEEE----c
Confidence 666553 566666543 11100 00000111023333334456666643 4444445554311111 111 0
Q ss_pred CCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1046 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
. -.|.++++.. .+|+.-+ +..|.|+++.+++
T Consensus 243 ~-------~~p~~~~~~~---pyll~~~-~~~ievr~l~~~~ 273 (302)
T smart00036 243 E-------FMPESFAYHS---PYLLAFH-DNGIEIRSIKTGE 273 (302)
T ss_pred C-------CcccEEEEEC---CEEEEEc-CCcEEEEECCCCc
Confidence 0 2244778874 4655555 5569999999987
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.20 E-value=1e+02 Score=36.84 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=51.4
Q ss_pred EEEccCCCEEEEEeCCCC-----EEEEECCCccccccee-eeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224 914 LAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 987 (1120)
Q Consensus 914 l~~s~d~~~l~s~s~Dg~-----v~iWd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~ 987 (1120)
+.|-|.|..++|-+.||. |+.+.-+. ...... +..... ..+..++|.-....++++..+.+++|-..
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNG--LrHGef~lr~~~d-----Ek~~~~~wn~~s~vlav~~~n~~~lwttk 324 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNG--LRHGEFDLRVGCD-----EKAFLENWNLLSTVLAVAEGNLLKLWTTK 324 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCC--cccCCccccCCch-----hhhhhhhhhHHHHHHHHhhcceEEEEEcc
Confidence 789999999999886653 55554433 111111 111111 13456677777777777778899999876
Q ss_pred CceeeeccccCCCCCCeeEEEECCC
Q 001224 988 KLECVKQWVPRESSAPITHATFSCD 1012 (1120)
Q Consensus 988 ~~~~~~~~~~~~h~~~v~~l~~s~d 1012 (1120)
+-....... -....+.-+.|.|.
T Consensus 325 NyhWYLK~e--~~ip~~s~vkwhpe 347 (1243)
T COG5290 325 NYHWYLKVE--RQIPGISYVKWHPE 347 (1243)
T ss_pred ceEEEEEEe--ecCCCcceeeeccc
Confidence 643322211 11334555666664
Done!